more fixes for miniconda? #729
billbrodtests.yml
on: push
test_models
2m 3s
test_snakefile
2m 7s
run_Freeman_check_notebook
2m 23s
test_mcmc
2m 14s
Annotations
4 errors and 16 warnings
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test_models
Process completed with exit code 2.
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test_snakefile
Process completed with exit code 1.
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test_mcmc
Process completed with exit code 1.
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run_Freeman_check_notebook
Process completed with exit code 1.
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test_models
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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test_models
CondaKeyError: 'channels': value 'defaults' not present in config
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test_models
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
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test_models
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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test_snakefile
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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test_snakefile
CondaKeyError: 'channels': value 'defaults' not present in config
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test_snakefile
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
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test_snakefile
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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test_mcmc
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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test_mcmc
CondaKeyError: 'channels': value 'defaults' not present in config
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test_mcmc
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
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test_mcmc
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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run_Freeman_check_notebook
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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run_Freeman_check_notebook
CondaKeyError: 'channels': value 'defaults' not present in config
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run_Freeman_check_notebook
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
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run_Freeman_check_notebook
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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