restructure file to work with setup-miniconda #728
billbrodtests.yml
on: push
test_models
8m 7s
test_snakefile
8m 5s
run_Freeman_check_notebook
11m 51s
test_mcmc
12m 50s
Annotations
4 errors and 30 warnings
|
test_snakefile
Process completed with exit code 127.
|
|
test_models
Process completed with exit code 127.
|
|
run_Freeman_check_notebook
Process completed with exit code 1.
|
|
test_mcmc
Process completed with exit code 1.
|
|
test_snakefile
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
test_snakefile
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
test_snakefile
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
test_snakefile
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_snakefile
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_snakefile
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_snakefile
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
|
|
test_snakefile
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
|
|
test_models
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
test_models
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
test_models
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
test_models
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_models
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_models
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_models
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
|
|
test_models
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
|
|
run_Freeman_check_notebook
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
run_Freeman_check_notebook
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
run_Freeman_check_notebook
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
run_Freeman_check_notebook
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
run_Freeman_check_notebook
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
run_Freeman_check_notebook
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
|
|
run_Freeman_check_notebook
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
|
|
test_mcmc
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
test_mcmc
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
test_mcmc
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
test_mcmc
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_mcmc
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
|
|
test_mcmc
warning libmamba [mkl-2024.2.2-ha957f24_16] The following files were already present in the environment:
- share/doc/mkl/licensing/third-party-programs-IntelMPI.txt
- share/doc/mkl/licensing/third-party-programs-benchmarks.txt
- share/doc/mkl/licensing/third-party-programs-level-zero.txt
- share/doc/mkl/licensing/third-party-programs-oneMKL-Interfaces.txt
- share/doc/mkl/licensing/third-party-programs-oneTBB.txt
- share/doc/mkl/licensing/third-party-programs-openmp.txt
- share/doc/mkl/licensing/third-party-programs-safestring.txt
- share/doc/mkl/licensing/third-party-programs.txt
|
|
test_mcmc
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
|