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Update README and index.html with improved clarity and new features
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valearna committed Feb 12, 2025
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13 changes: 6 additions & 7 deletions README.md
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Expand Up @@ -37,30 +37,29 @@ robust and efficient user experience.

### Main Updates
- Multiple authors can now submit data for the same paper. Each author is recognized as a contributor on the WormBase paper page
- The author curation interface now works even for authors behind stringent firewalls and proxies
- The author curation interface now works also for authors behind stringent firewalls and proxies
- PDFs and related bibliographic data are now accessed from the Alliance of Genome Resources (AGR) central repository
- PDF to text conversion is now performed through GROBID, a machine learning library for converting structured PDFs into TEI, a standard XML format specifically designed for scientific articles
- Curators can now identify sentences of interest for curation in articles using machine learning models integrated into the curator dashboard
- Curators can now identify sentences of interest for curation -- gene expression and protein kinase activity -- in articles using machine learning models integrated into the curator dashboard
- Reminder emails are now sent every two weeks to increase the response rate
- ACKnowledge can now extract data for multiple organisms
- ACKnowledge is now integrated into Caltech AWS infrastructure, with improved security and performance
- ACKnowledge is now listed on the International Society for Biocuration (ISB) [curate page](https://www.biocuration.org/curate-now/)

### User Updates
- Non-curated transgenes are not automatically extracted from the text anymore
- Authors can now indicate if they contributed for the paper through other community curation initiatives
- Improved email exclusion list to consider preferences for receiving emails expressed by users on WormBase
- Improved email exclusion list to consider user preferences from WormBase
- Removed images from all emails to improve accessibility and compatibility with email clients
- Added FAQ section for the 'new species' field

### Bug Fixes
- Fixed links to PubMed using the new URL format
- The author portal login is now case-insensitive
- Fixed various issues with the author curation form
- Fixed other UI issues with the author curation form

### Curator Dashboard Updates
- Added a new page to view the sentences of interest identified by the machine learning models
- New button to download the sentences of interest in a CSV format
- Added a new page to view sentences of interest identified by machine learning
- Added a new button to download sentences of interest in CSV format

## Version 4.0

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13 changes: 6 additions & 7 deletions index.html
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Expand Up @@ -51,33 +51,32 @@ <h3>Introduction</h3>
<h3>Main Updates</h3>
<ul>
<li>Multiple authors can now submit data for the same paper. Each author is recognized as a contributor on the WormBase paper page</li>
<li>The author curation interface now works even for authors behind stringent firewalls and proxies</li>
<li>The author curation interface now works also for authors behind stringent firewalls and proxies</li>
<li>PDFs and related bibliographic data are now accessed from the Alliance of Genome Resources central repository</li>
<li>PDF to text conversion is now performed through GROBID, a machine learning library for converting structured PDFs into TEI, a standard XML format specifically designed for scientific articles</li>
<li>Curators can now identify sentences of interest for curation in articles using machine learning models integrated into the curator dashboard</li>
<li>Curators can now identify sentences of interest for curation -- gene expression and protein kinase activity -- in articles using machine learning models integrated into the curator dashboard</li>
<li>Reminder emails are now sent every two weeks to increase the response rate</li>
<li>ACKnowledge can now extract data for multiple organisms</li>
<li>ACKnowledge is now integrated into Caltech AWS infrastructure, with improved security and performance</li>
<li>ACKnowledge is now listed on the International Society for Biocuration (ISB) <a href="https://www.biocuration.org/curate-now/">curate page</a></li>
</ul>
<h4><strong>User Updates</strong></h4>
<ul>
<li>Non-curated transgenes are not automatically extracted from the text anymore</li>
<li>Authors can now indicate if they contributed for the paper through other community curation initiatives</li>
<li>Improved email exclusion list to consider preferences for receiving emails expressed by users on WormBase</li>
<li>Improved email exclusion list to consider user preferences from WormBase</li>
<li>Removed images from all emails to improve accessibility and compatibility with email clients</li>
<li>Added FAQ section for the 'new species' field</li>
</ul>
<h4><strong>Bug Fixes</strong></h4>
<ul>
<li>Fixed links to PubMed using the new URL format</li>
<li>The author portal login is now case-insensitive</li>
<li>Fixed various issues with the author curation form</li>
<li>Fixed other UI issues with the author curation form</li>
</ul>
<h4><strong>Curator Dashboard Updates</strong></h4>
<ul>
<li>Added a new page to view the sentences of interest identified by the machine learning models</li>
<li>New button to download the sentences of interest in a CSV format</li>
<li>Added a new page to view sentences of interest identified by machine learning</li>
<li>Added a new button to download sentences of interest in CSV format</li>
</ul>

<h2>Version 4.0</h2>
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