ficx issue with --truth-sensitivity_filter_level parameeter in ApplyVQSR

TRON-Bioinformatics · Dec 12, 2021 · 5f8ed2c · 5f8ed2c
1 parent a0b00c7
commit 5f8ed2c
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diff --git a/modules/02_vqsr.nf b/modules/02_vqsr.nf
@@ -80,7 +80,7 @@ process VQSR {
    --reference ${params.reference} \
    --variant ${vcf} \
    --output ${name}.hc.vcf \
-   --ts_filter_level 99.0 \
+   --truth-sensitivity_filter_level 99.0 \
    --tranches-file ${tranches_file} \
    --recal-file ${recalibration_file} \
    --mode BOTH

diff --git a/nextflow.config b/nextflow.config
@@ -33,7 +33,7 @@ env {
 // Capture exit codes from upstream processes when piping
 process.shell = ['/bin/bash', '-euo', 'pipefail']
 
-VERSION = '0.1.1'
+VERSION = '0.1.2'
 DOI = 'bla'
 
 manifest {