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Work on simulator packages #6

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merged 30 commits into from
Aug 23, 2024
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a1656c8
Initial commit for simulator qmd.
astamm Aug 19, 2024
994c637
Added simpr.
astamm Aug 20, 2024
e564d11
conflits !
Aug 20, 2024
49f9677
update table
pneuvial Aug 20, 2024
04d2e48
add chunk names
pneuvial Aug 20, 2024
9a72730
minor changes
pneuvial Aug 20, 2024
441b86c
update site
pneuvial Aug 20, 2024
39051b5
Added simulator section.
astamm Aug 20, 2024
8ebf965
clean and build
CedricMidoux Aug 20, 2024
295d915
minor update
pneuvial Aug 20, 2024
af2281b
minor updates
pneuvial Aug 20, 2024
640daa4
add DeclareDesign
pneuvial Aug 20, 2024
7d4e44a
Add SimEngine
julieaubert Aug 20, 2024
168a108
add SimChef
Latortuga96 Aug 20, 2024
0d10596
typo simpr to simulator
Aug 20, 2024
ed70930
add equaltiy test with simulator
Aug 20, 2024
59d4305
Update simulator files.
astamm Aug 22, 2024
077d295
Cleaned version of simulator.qmd
astamm Aug 22, 2024
84b9f32
Done merging master in branch.
astamm Aug 22, 2024
17a701e
Added packages useful to compile simulator.qmd.
astamm Aug 22, 2024
3cd5bad
Fix typo in SimEngine package name.
astamm Aug 22, 2024
4431ba1
Add setup R and pandoc to GHA.
astamm Aug 22, 2024
d152e62
Merge modifications to _quarto.yml.
astamm Aug 22, 2024
617092f
Update version of called GHA.
astamm Aug 22, 2024
d3e5abf
Fix PAT auth in GHA.
astamm Aug 22, 2024
05ec453
Continue fix for PAT access.
astamm Aug 22, 2024
84c99f2
Further fixing.
astamm Aug 22, 2024
149af8c
Update GHA to use new docker container and remove _site folder.
astamm Aug 22, 2024
cc57642
Back to using checkout v2.
astamm Aug 22, 2024
a7eee79
Merge main in branch.
astamm Aug 23, 2024
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3 changes: 2 additions & 1 deletion .github/workflows/pr_actions.yml
Original file line number Diff line number Diff line change
Expand Up @@ -11,14 +11,15 @@ jobs:
build:
name: Build website with rmarkdown
runs-on: ubuntu-latest
container: stateofther/r-finistr2024:0.1
container: stateofther/r-finistr2024:0.2

steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: Additional R packages
run: |
Rscript -e "install.packages(c('tictoc', 'nimble', 'ggmcmc', 'compareMCMCs', 'nimbleHMC', 'mvtnorm'))"
Rscript -e "install.packages(c('ggplot2', 'dplyr', 'simulator', 'simpr', 'SimEngine', 'DT', 'withr', 'bench'))"
- name: Additional Python packages
run: |
pip install torch torch_geometric
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2 changes: 2 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -56,3 +56,5 @@ _site/
*_cache/
01_nimble.html
local_nimble*.R

_site
3 changes: 2 additions & 1 deletion _quarto.yml
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,8 @@ website:
href: python_practice.qmd
- text: C++ depuis Python
href: c_python.qmd
- text: Simulations
href: simulator.qmd
- text: Développement
menu:
- text: Pre-commit avec R
Expand All @@ -31,7 +33,6 @@ website:
menu:
- text: Déploiement Shiny
href: shiny-deployment.qmd

aria-label: GitHub
format:
html:
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