uPDATE

.snakemake/log/2024-04-24T121911.788172.snakemake.log

@@ -0,0 +1,3 @@
+NameError in line 4 of /home/rendrick27/Documents/GitHub/Assignment_01/Snakefile:
+name 'glob' is not defined
+  File "/home/rendrick27/Documents/GitHub/Assignment_01/Snakefile", line 4, in <module>

.snakemake/log/2024-04-24T122022.710613.snakemake.log

@@ -0,0 +1,3 @@
+NameError in line 18 of /home/rendrick27/Documents/GitHub/Assignment_01/Snakefile:
+name 'nuccore' is not defined
+  File "/home/rendrick27/Documents/GitHub/Assignment_01/Snakefile", line 18, in <module>

.snakemake/log/2024-04-24T122042.601136.snakemake.log

@@ -0,0 +1,72 @@
+Building DAG of jobs...
+Using shell: /usr/bin/bash
+Provided cores: 8
+Rules claiming more threads will be scaled down.
+Job stats:
+job              count    min threads    max threads
+-------------  -------  -------------  -------------
+ASCN_Download        4              1              1
+all                  1              1              1
+total                5              1              1
+
+Select jobs to execute...
+
+[Wed Apr 24 12:20:42 2024]
+rule ASCN_Download:
+    input: ASCN/18S_rRNA.txt
+    output: fasta/18S_rRNA.fasta
+    jobid: 3
+    wildcards: sample=18S_rRNA
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:20:42 2024]
+rule ASCN_Download:
+    input: ASCN/ITS–2.txt
+    output: fasta/ITS–2.fasta
+    jobid: 4
+    wildcards: sample=ITS–2
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:20:42 2024]
+rule ASCN_Download:
+    input: ASCN/28S_rRNA.txt
+    output: fasta/28S_rRNA.fasta
+    jobid: 1
+    wildcards: sample=28S_rRNA
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:20:42 2024]
+rule ASCN_Download:
+    input: ASCN/COI.txt
+    output: fasta/COI.fasta
+    jobid: 2
+    wildcards: sample=COI
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:20:44 2024]
+Finished job 1.
+1 of 5 steps (20%) done
+[Wed Apr 24 12:20:44 2024]
+Finished job 4.
+2 of 5 steps (40%) done
+[Wed Apr 24 12:20:44 2024]
+Finished job 3.
+3 of 5 steps (60%) done
+[Wed Apr 24 12:20:45 2024]
+Finished job 2.
+4 of 5 steps (80%) done
+Select jobs to execute...
+
+[Wed Apr 24 12:20:45 2024]
+localrule all:
+    input: fasta/28S_rRNA.fasta, fasta/COI.fasta, fasta/18S_rRNA.fasta, fasta/ITS–2.fasta
+    jobid: 0
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:20:45 2024]
+Finished job 0.
+5 of 5 steps (100%) done
+Complete log: /home/rendrick27/Documents/GitHub/Assignment_01/.snakemake/log/2024-04-24T122042.601136.snakemake.log

.snakemake/log/2024-04-24T122108.327711.snakemake.log

@@ -0,0 +1,72 @@
+Building DAG of jobs...
+Using shell: /usr/bin/bash
+Provided cores: 8
+Rules claiming more threads will be scaled down.
+Job stats:
+job              count    min threads    max threads
+-------------  -------  -------------  -------------
+ASCN_Download        4              1              1
+all                  1              1              1
+total                5              1              1
+
+Select jobs to execute...
+
+[Wed Apr 24 12:21:08 2024]
+rule ASCN_Download:
+    input: ASCN/18S_rRNA.txt
+    output: fasta/18S_rRNA.fasta
+    jobid: 3
+    wildcards: sample=18S_rRNA
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:21:08 2024]
+rule ASCN_Download:
+    input: ASCN/ITS–2.txt
+    output: fasta/ITS–2.fasta
+    jobid: 4
+    wildcards: sample=ITS–2
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:21:08 2024]
+rule ASCN_Download:
+    input: ASCN/28S_rRNA.txt
+    output: fasta/28S_rRNA.fasta
+    jobid: 1
+    wildcards: sample=28S_rRNA
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:21:08 2024]
+rule ASCN_Download:
+    input: ASCN/COI.txt
+    output: fasta/COI.fasta
+    jobid: 2
+    wildcards: sample=COI
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:21:09 2024]
+Finished job 3.
+1 of 5 steps (20%) done
+[Wed Apr 24 12:21:09 2024]
+Finished job 4.
+2 of 5 steps (40%) done
+[Wed Apr 24 12:21:09 2024]
+Finished job 1.
+3 of 5 steps (60%) done
+[Wed Apr 24 12:21:09 2024]
+Finished job 2.
+4 of 5 steps (80%) done
+Select jobs to execute...
+
+[Wed Apr 24 12:21:09 2024]
+localrule all:
+    input: fasta/28S_rRNA.fasta, fasta/COI.fasta, fasta/18S_rRNA.fasta, fasta/ITS–2.fasta
+    jobid: 0
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:21:09 2024]
+Finished job 0.
+5 of 5 steps (100%) done
+Complete log: /home/rendrick27/Documents/GitHub/Assignment_01/.snakemake/log/2024-04-24T122108.327711.snakemake.log

.snakemake/log/2024-04-24T122610.459511.snakemake.log

@@ -0,0 +1,7 @@
+Building DAG of jobs...
+MissingInputException in line 8 of /home/rendrick27/Documents/GitHub/Assignment_01/Snakefile:
+Missing input files for rule all:
+ffasta/COI_align.fasta
+ffasta/28S_rRNA_align.fasta
+ffasta/ITS–2_align.fasta
+ffasta/18S_rRNA_align.fasta

.snakemake/log/2024-04-24T122632.070978.snakemake.log

@@ -0,0 +1,6 @@
+Building DAG of jobs...
+WorkflowError:
+MissingInputException: Missing input files for rule Alignment:
+fasta/28S_rRNA.fasa
+MissingInputException: Missing input files for rule ASCN_Download:
+ASCN/28S_rRNA_align.txt

.snakemake/log/2024-04-24T122659.186295.snakemake.log

@@ -0,0 +1,125 @@
+Building DAG of jobs...
+Using shell: /usr/bin/bash
+Provided cores: 8
+Rules claiming more threads will be scaled down.
+Job stats:
+job              count    min threads    max threads
+-------------  -------  -------------  -------------
+ASCN_Download        4              1              1
+Alignment            4              1              1
+all                  1              1              1
+total                9              1              1
+
+Select jobs to execute...
+
+[Wed Apr 24 12:26:59 2024]
+rule ASCN_Download:
+    input: ASCN/28S_rRNA.txt
+    output: fasta/28S_rRNA.fasta
+    jobid: 2
+    wildcards: sample=28S_rRNA
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:26:59 2024]
+rule ASCN_Download:
+    input: ASCN/COI.txt
+    output: fasta/COI.fasta
+    jobid: 4
+    wildcards: sample=COI
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:26:59 2024]
+rule ASCN_Download:
+    input: ASCN/ITS–2.txt
+    output: fasta/ITS–2.fasta
+    jobid: 8
+    wildcards: sample=ITS–2
+    resources: tmpdir=/tmp
+
+
+[Wed Apr 24 12:26:59 2024]
+rule ASCN_Download:
+    input: ASCN/18S_rRNA.txt
+    output: fasta/18S_rRNA.fasta
+    jobid: 6
+    wildcards: sample=18S_rRNA
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:27:00 2024]
+Finished job 8.
+1 of 9 steps (11%) done
+Select jobs to execute...
+
+[Wed Apr 24 12:27:00 2024]
+rule Alignment:
+    input: fasta/ITS–2.fasta
+    output: fasta/ITS–2_align.fasta
+    jobid: 7
+    wildcards: sample=ITS–2
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:27:00 2024]
+Finished job 2.
+2 of 9 steps (22%) done
+Select jobs to execute...
+
+[Wed Apr 24 12:27:00 2024]
+rule Alignment:
+    input: fasta/28S_rRNA.fasta
+    output: fasta/28S_rRNA_align.fasta
+    jobid: 1
+    wildcards: sample=28S_rRNA
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:27:00 2024]
+Finished job 6.
+3 of 9 steps (33%) done
+Select jobs to execute...
+
+[Wed Apr 24 12:27:00 2024]
+rule Alignment:
+    input: fasta/18S_rRNA.fasta
+    output: fasta/18S_rRNA_align.fasta
+    jobid: 5
+    wildcards: sample=18S_rRNA
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:27:01 2024]
+Finished job 4.
+4 of 9 steps (44%) done
+Select jobs to execute...
+
+[Wed Apr 24 12:27:01 2024]
+rule Alignment:
+    input: fasta/COI.fasta
+    output: fasta/COI_align.fasta
+    jobid: 3
+    wildcards: sample=COI
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:27:02 2024]
+Finished job 7.
+5 of 9 steps (56%) done
+[Wed Apr 24 12:27:04 2024]
+Finished job 1.
+6 of 9 steps (67%) done
+[Wed Apr 24 12:27:04 2024]
+Finished job 3.
+7 of 9 steps (78%) done
+[Wed Apr 24 12:27:05 2024]
+Finished job 5.
+8 of 9 steps (89%) done
+Select jobs to execute...
+
+[Wed Apr 24 12:27:05 2024]
+localrule all:
+    input: fasta/28S_rRNA_align.fasta, fasta/COI_align.fasta, fasta/18S_rRNA_align.fasta, fasta/ITS–2_align.fasta
+    jobid: 0
+    resources: tmpdir=/tmp
+
+[Wed Apr 24 12:27:05 2024]
+Finished job 0.
+9 of 9 steps (100%) done
+Complete log: /home/rendrick27/Documents/GitHub/Assignment_01/.snakemake/log/2024-04-24T122659.186295.snakemake.log

.snakemake/metadata/ZmFzdGEvMThTX3JSTkEuZmFzdGE=

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+{"version": null, "code": "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", "rule": "ASCN_Download", "input": ["ASCN/18S_rRNA.txt"], "log": [], "params": ["'nuccore'"], "shellcmd": "\n        python3 ASCN_Download.py nuccore ASCN/18S_rRNA.txt > fasta/18S_rRNA.fasta\n        ", "incomplete": false, "starttime": 1713958019.4812913, "endtime": 1713958020.9613116, "job_hash": 8755909404404, "conda_env": null, "container_img_url": null}

.snakemake/metadata/ZmFzdGEvMThTX3JSTkFfYWxpZ24uZmFzdGE=

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+{"version": null, "code": "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", "rule": "Alignment", "input": ["fasta/18S_rRNA.fasta"], "log": [], "params": ["8"], "shellcmd": "\n        mafft --auto --thread -8 fasta/18S_rRNA.fasta > fasta/18S_rRNA_align.fasta\n        ", "incomplete": false, "starttime": 1713958020.9653115, "endtime": 1713958025.3453736, "job_hash": 8755909404388, "conda_env": null, "container_img_url": null}

.snakemake/metadata/ZmFzdGEvMjhTX3JSTkEuZmFzdGE=

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+{"version": null, "code": "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", "rule": "ASCN_Download", "input": ["ASCN/28S_rRNA.txt"], "log": [], "params": ["'nuccore'"], "shellcmd": "\n        python3 ASCN_Download.py nuccore ASCN/28S_rRNA.txt > fasta/28S_rRNA.fasta\n        ", "incomplete": false, "starttime": 1713958019.477291, "endtime": 1713958020.9373112, "job_hash": 8755909404308, "conda_env": null, "container_img_url": null}

.snakemake/metadata/ZmFzdGEvMjhTX3JSTkFfYWxpZ24uZmFzdGE=

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+{"version": null, "code": "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", "rule": "Alignment", "input": ["fasta/28S_rRNA.fasta"], "log": [], "params": ["8"], "shellcmd": "\n        mafft --auto --thread -8 fasta/28S_rRNA.fasta > fasta/28S_rRNA_align.fasta\n        ", "incomplete": false, "starttime": 1713958020.9373112, "endtime": 1713958024.0813553, "job_hash": 8755909404292, "conda_env": null, "container_img_url": null}

.snakemake/metadata/ZmFzdGEvQ09JLmZhc3Rh

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+{"version": null, "code": "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", "rule": "ASCN_Download", "input": ["ASCN/COI.txt"], "log": [], "params": ["'nuccore'"], "shellcmd": "\n        python3 ASCN_Download.py nuccore ASCN/COI.txt > fasta/COI.fasta\n        ", "incomplete": false, "starttime": 1713958019.477291, "endtime": 1713958021.9533253, "job_hash": 8755909404356, "conda_env": null, "container_img_url": null}

.snakemake/metadata/ZmFzdGEvQ09JX2FsaWduLmZhc3Rh

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+{"version": null, "code": "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", "rule": "Alignment", "input": ["fasta/COI.fasta"], "log": [], "params": ["8"], "shellcmd": "\n        mafft --auto --thread -8 fasta/COI.fasta > fasta/COI_align.fasta\n        ", "incomplete": false, "starttime": 1713958021.9533253, "endtime": 1713958024.753365, "job_hash": 8755909404340, "conda_env": null, "container_img_url": null}

.snakemake/metadata/ZmFzdGEvSVRT4oCTMi5mYXN0YQ==

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+{"version": null, "code": "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", "rule": "ASCN_Download", "input": ["ASCN/ITS\u20132.txt"], "log": [], "params": ["'nuccore'"], "shellcmd": "\n        python3 ASCN_Download.py nuccore ASCN/ITS\u20132.txt > fasta/ITS\u20132.fasta\n        ", "incomplete": false, "starttime": 1713958019.477291, "endtime": 1713958020.7573087, "job_hash": 8755909404452, "conda_env": null, "container_img_url": null}

.snakemake/metadata/ZmFzdGEvSVRT4oCTMl9hbGlnbi5mYXN0YQ==

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+{"version": null, "code": "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", "rule": "Alignment", "input": ["fasta/ITS\u20132.fasta"], "log": [], "params": ["8"], "shellcmd": "\n        mafft --auto --thread -8 fasta/ITS\u20132.fasta > fasta/ITS\u20132_align.fasta\n        ", "incomplete": false, "starttime": 1713958020.7573087, "endtime": 1713958022.557334, "job_hash": 8755909404436, "conda_env": null, "container_img_url": null}