fix env variable

PolusAI · Dec 11, 2024 · b8b69c0 · b8b69c0
1 parent 711453e
commit b8b69c0
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/transforms/tabular-thresholding-tool/Dockerfile b/transforms/tabular-thresholding-tool/Dockerfile
@@ -3,7 +3,7 @@ FROM polusai/bfio:2.4.5
 # environment variables defined in polusai/bfio
 ENV EXEC_DIR="/opt/executables"
 ENV POLUS_IMG_EXT=".ome.tif"
-ENV POLUS_TAB_EXT=".csv"
+ENV POLUS_TAB_EXT=".arrow"
 ENV POLUS_LOG="INFO"
 
 # Work directory defined in the base container

diff --git a/...resholding-tool/src/polus/tabular/transforms/tabular_thresholding/tabular_thresholding.py b/...resholding-tool/src/polus/tabular/transforms/tabular_thresholding/tabular_thresholding.py
@@ -16,7 +16,7 @@
 
 logger = logging.getLogger(__name__)
 
-POLUS_TAB_EXT = os.environ.get("POLUS_TAB_EXT", ".csv")
+POLUS_TAB_EXT = os.environ.get("POLUS_TAB_EXT", ".arrow")
 
 
 class Methods(str, enum.Enum):