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WIP: updating installation instructions/environments.
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| Conda Environments | ||
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| See the official documentation for the [installation instructions](). | ||
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| OSL only environments: | ||
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| - `linux-generic.yml`: most generic environment for linux computers. | ||
| - `bmrc.yml`: for the Oxford BMRC cluster. | ||
| - `hbaws.yml`: for the OHBA workstation. Comes with Spyder. | ||
| - `m1-mac.yml`: for M1 Macs. Comes with Spyder. | ||
| - `m2-mac.yml`: for M2 Macs. Comes with Spyder. | ||
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| OSL + osl-dynamics environments: | ||
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| - **`linux.yml`: recommended environment for linux computers.** | ||
| - **`mac.yml`: recommended environment for Mac computers.** | ||
| - `osl-workshop-23.yml`: used in the [2023 OSL Workshop](https://osf.io/zxb6c/). | ||
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| All environments come with Jupyter Notebook. |
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| name: osl | ||
| channels: | ||
| - conda-forge | ||
| dependencies: | ||
| - python=3.8.16 | ||
| - pip=23.0.1 | ||
| - vtk=9.1.0=*osmesa* | ||
| - pyvista=0.38.5 | ||
| - pip: | ||
| - jupyter==1.0.0 | ||
| - ipympl==0.9.3 | ||
| - ipywidgets==8.0.5 | ||
| - ipyevents==2.0.1 | ||
| - ipyvtklink==0.2.2 | ||
| - jupyter-client==8.1.0 | ||
| - numpy==1.23.5 | ||
| - scipy==1.10.1 | ||
| - matplotlib==3.7.1 | ||
| - mne==1.3.1 | ||
| - scikit-learn==1.2.2 | ||
| - fslpy==3.11.3 | ||
| - sails==1.4.0 | ||
| - tabulate==0.9.0 | ||
| - pyyaml==6.0 | ||
| - neurokit2==0.2.3 | ||
| - jinja2==3.1.2 | ||
| - glmtools==0.2.1 | ||
| - numba==0.56.4 | ||
| - nilearn==0.10.2 | ||
| - dask==2023.3.2 | ||
| - distributed==2023.3.2 | ||
| - parse==1.19.0 | ||
| - opencv-python==4.7.0.72 | ||
| - h5io==0.1.7 | ||
| - mat73==0.60 | ||
| - nibabel==5.0.1 | ||
| - pandas==1.5.3 | ||
| - panel==1.2.3 | ||
| - pqdm==0.2.0 | ||
| - seaborn==0.12.2 | ||
| - tensorflow-macos==2.9.1 | ||
| - tensorflow_probability==0.17.0 | ||
| - tqdm==4.65.0 | ||
| - osfclient==0.0.5 | ||
| - osl | ||
| - osl-dynamics |