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introduction to deep learning, basic biomolecular representations, benchmark models and datasets, etc. Web pages available: https://mingyixue.github.io/deep-learning-for-bioinformatics-101/

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The research field of chem/bio-informatics with deep learning is quickly evolving, highly competitive and comprehensively interdiscplined, which is the major motivation to wrap up this tutorial.

Document WebPage

The tutorial document is still under development. A stable (but not complete) version built upon source/ is available here, supported by sphinx.

Quick Notebook Preview

Preview of executed notebooks under code/ is available here, supported by nbviewer.

Quick Notebook Execution

Jupyter notebooks are runnable interactively, supported by Binder. It may take some time to build the environment.

Topic Plans

  • Quick start
    • Tutorials
    • Notebooks
  • Dataset
  • Data representations
  • Discriminative models
    • Tutorials
    • Notebooks
  • Generative models
    • Tutorials
    • Notebooks
  • Useful packages
  • Resources
  • Set up notebooks in Colab, Binder and nbviewer

Compiling Document Environment

The web pages are available here, but you can also compile this documentation locally:

conda create -n sphinx python=3.10
conda activate sphinx
python -m pip install -U sphinx
pip install nbsphinx furo
pip install nbconvert nbformat
pip install pandoc
pip install sphinx-design
make html

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introduction to deep learning, basic biomolecular representations, benchmark models and datasets, etc. Web pages available: https://mingyixue.github.io/deep-learning-for-bioinformatics-101/

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