forked from respec/HSPsquared
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Showing
2 changed files
with
53 additions
and
60 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,45 +1,42 @@ | ||
| name: hsp2_py38 | ||
| channels: | ||
| - conda-forge | ||
| - nodefaults | ||
|
|
||
| dependencies: | ||
| # Aligned with Anaconda 2021.05 (May 13, 2021) | ||
| # package management | ||
| - conda | ||
| - conda-build | ||
| - pip | ||
|
|
||
| # Running HSP2 | ||
| - python =3.8* | ||
| - scipy # Scipy also installs numpy | ||
| - pandas # Pandas installs most scientific Python modules, such as Numpy, etc. | ||
| - numba | ||
| - pytables >=3.6.1 # Installs HDF5 v1.10.6 | ||
| - h5py >=3.1 # Installs HDF5 v1.10.6 | ||
| - dask | ||
| - networkx # used in HSP2tools/graph.py. | ||
| - scipy # Scipy also installs numpy | ||
| - pandas =1.2.* # Pandas installs most scientific Python modules, such as Numpy, etc. | ||
| - numba =0.53.1 | ||
| - numpy =1.20.* # for compatibility with numba version <0.53 | ||
| - hdf5 =1.10.6 # latest compatible with both versions of PyTables & h5py below | ||
| - pytables =3.6.1 | ||
| - h5py >=3.1 | ||
| - hdf5plugin # HDF5 compression filters for h5py & jupyterlab_hdf | ||
|
|
||
| # Interactivity & Visualization | ||
| - jupyterlab >=3.0.12 | ||
| - ipywidgets | ||
| # - texlive-core # to export notebooks to PDF. https://nbconvert.readthedocs.io/en/latest/install.html#installing-tex | ||
| - matplotlib | ||
| # Interactivity & Visualization via Jupyter Notebooks (optional, but required for tutorials) | ||
| - jupyterlab >=3.0.14 # also installs classic Jupyter notbook | ||
| - nodejs # required for many JupyterLab extensions | ||
| - nb_conda # Conda environment & package access extension from within Jupyter | ||
| # HoloViz, https://holoviz.org | ||
| - hvplot # hvPlot installs most HoloViz libs, including matplotlib | ||
| - ipywidgets # Required for HoloViz interactivity in Jupyter notebooks | ||
|
|
||
| # Dev tools (optional) | ||
| # - python-language-server | ||
| - python-language-server | ||
| - jupyter-lsp-python # Includes both the server extension (jupyter-lsp) and pyls third-party server (python-language-server) | ||
| - jupyterlab-lsp # Docs at https://github.com/krassowski/jupyterlab-lsp | ||
|
|
||
| # package management | ||
| - conda | ||
| - conda-build | ||
|
|
||
| # Optional extension dependencies for JupyterLab | ||
| # - nodejs # required for many extensions | ||
| # - ipympl # jupyter-matplotlib, https://github.com/matplotlib/ipympl | ||
| # - qgrid # https://github.com/quantopian/qgrid | ||
|
|
||
| # PIP install requirements only if it is not possible with conda | ||
| # PIP install requirements only if it is not possible with conda | ||
| # https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#using-pip-in-an-environment | ||
| - pip | ||
| - pip: | ||
| # Optional, but recommended for tutorials | ||
| - lckr-jupyterlab-variableinspector # https://github.com/lckr/jupyterlab-variableInspector | ||
| # jupyterlab_hdf is not yet compatible with jupyterlab >3.0, but it will soon. | ||
| # See https://github.com/jupyterlab/jupyterlab-hdf5/issues/42#issuecomment-801786628 | ||
| # - jupyterlab_hdf # https://github.com/jupyterlab/jupyterlab-hdf5 | ||
| # - hdf5plugin # https://github.com/jupyterlab/jupyterlab-hdf5#compression-filters | ||
| - jupyterlab_hdf # Explore HDF5 files in JupyterLab. https://github.com/jupyterlab/jupyterlab-hdf5 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,49 +1,45 @@ | ||
| name: hsp2_py38_dev | ||
| name: hsp2_py39_dev | ||
| channels: | ||
| - conda-forge | ||
| - nodefaults | ||
| # - nodefaults | ||
|
|
||
| dependencies: | ||
| # Aligned with Anaconda 2021.11 (Nov 17, 2021); exception with HDF5 & PyTables | ||
| # package management | ||
| - conda | ||
| - conda-build | ||
| - pip | ||
|
|
||
| # Running HSP2 | ||
| - python =3.8.* | ||
| - scipy # Scipy also installs numpy | ||
| - pandas # Pandas installs most scientific Python modules, such as Numpy, etc. | ||
| - numba | ||
| - pytables >=3.6.1 # Installs HDF5 v1.10.6 | ||
| - h5py >=3.1 # Installs HDF5 v1.10.6 | ||
| - python =3.9* | ||
| - scipy # Scipy also installs numpy | ||
| - pandas =1.3.* # Pandas installs most scientific Python modules, such as Numpy, etc. | ||
| - numba =0.54.* | ||
| - numpy =1.20.* # for compatibility with numba version <0.54 | ||
| - hdf5 =1.12.* # latest compatible with both versions of pytables & h5py below | ||
| # - pytables =3.7.* # 3.7 not yet on conda-forge | ||
| - h5py >=3.3 | ||
| - hdf5plugin # HDF5 compression filters for h5py & jupyterlab_hdf | ||
| - dask | ||
| - networkx # used in HSP2tools/graph.py. | ||
|
|
||
| # Interactivity & Visualization via Jupyter Notebooks | ||
| - jupyterlab >=3.0.12 | ||
| # Interactivity & Visualization via Jupyter Notebooks (optional, but required for tutorials) | ||
| - jupyterlab >=3.2.* # also installs classic Jupyter notbook | ||
| - nodejs # required for many JupyterLab extensions | ||
| - nb_conda # Conda environment & package access extension from within Jupyter | ||
| - ipywidgets | ||
| # - texlive-core # to export notebooks to PDF. https://nbconvert.readthedocs.io/en/latest/install.html#installing-tex | ||
| - matplotlib | ||
|
|
||
| # HoloViz (optional), https://holoviz.org | ||
| - hvplot # hvPlot installs most HoloViz libs | ||
| # HoloViz, https://holoviz.org | ||
| - hvplot # hvPlot installs most HoloViz libs, including matplotlib | ||
| - ipywidgets # Required for HoloViz interactivity in Jupyter notebooks | ||
|
|
||
| # Dev tools (optional) | ||
| # - python-language-server | ||
| - python-language-server | ||
| - jupyter-lsp-python # Includes both the server extension (jupyter-lsp) and pyls third-party server (python-language-server) | ||
| - jupyterlab-lsp # Docs at https://github.com/krassowski/jupyterlab-lsp | ||
|
|
||
| # package management | ||
| - conda | ||
| - conda-build | ||
|
|
||
| # Optional extension dependencies for JupyterLab | ||
| # - nodejs # required for many extensions | ||
| # - ipympl # jupyter-matplotlib, https://github.com/matplotlib/ipympl | ||
| # - qgrid # https://github.com/quantopian/qgrid | ||
|
|
||
| # PIP install requirements only if it is not possible with conda | ||
| # PIP install requirements only if it is not possible with conda | ||
| # https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#using-pip-in-an-environment | ||
| - pip | ||
| - pip: | ||
| - tables ==3.7.* # pytables 3.7 not yet on conda-forge | ||
| # Optional, but recommended for tutorials | ||
| - lckr-jupyterlab-variableinspector # https://github.com/lckr/jupyterlab-variableInspector | ||
| # jupyterlab_hdf is not yet compatible with jupyterlab >3.0, but it will soon. | ||
| # See https://github.com/jupyterlab/jupyterlab-hdf5/issues/42#issuecomment-801786628 | ||
| # - jupyterlab_hdf # https://github.com/jupyterlab/jupyterlab-hdf5 | ||
| # - hdf5plugin # https://github.com/jupyterlab/jupyterlab-hdf5#compression-filters | ||
| - jupyterlab_hdf # Explore HDF5 files in JupyterLab. https://github.com/jupyterlab/jupyterlab-hdf5 |