jaspar 2024

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KellisLab · Apr 12, 2024 · 16d7512 · 16d7512
1 parent aa6a03f
commit 16d7512
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/benj/integration.py b/benj/integration.py
@@ -11,7 +11,7 @@ def integrate_atac(adata, output=None, batch=None, use_harmony:bool=False, use_b
                    min_n_cells_by_counts:int=2, cor_cutoff:float=0.8,
                    max_iter_harmony:int=50,
                    leiden_n_iterations:int=-1,
-                   genome:str=None, release:str="JASPAR2022", species:int=-1,
+                   genome:str=None, release:str="JASPAR2024", species:int=-1,
                    plot=[], save_data:bool=False,
                    qc_cols=["log1p_total_counts"], sw=None, **kwargs):
     import os

diff --git a/scripts/integrate_atac.py b/scripts/integrate_atac.py
@@ -14,7 +14,7 @@
     ap.add_argument("--prefix", default="C")
     ap.add_argument("--genome", required=True)
     ap.add_argument("-c", "--min-cells-per-peak", type=int, default=10, dest="min_n_cells_by_counts")
-    ap.add_argument("-j", "--jaspar", default="JASPAR2022")
+    ap.add_argument("-j", "--jaspar", default="JASPAR2024")
     ap.add_argument("-s", "--species", type=int, required=True)
     ap.add_argument("--cor-cutoff", type=float, default=0.8)
     ap.add_argument("--no-use-harmony", dest="use_harmony", action="store_false")