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Fixed implementation guide QA issues #13

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Dec 4, 2024
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Fixed implementation guide QA issues #13

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61 changes: 0 additions & 61 deletions input/fsh/CodingSystem.fsh
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10 changes: 5 additions & 5 deletions input/fsh/OpenELISDiagnosticReport.fsh
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Expand Up @@ -8,8 +8,8 @@ Description: "DiagnosticReport resource created by a LIS"
* identifier ^slicing.discriminator.path = "system"
* identifier ^slicing.rules = #open
* identifier contains uuid 1..1
* identifier[uuid].system = "http://openelis-global.org/analysisResult_uuid"
* status from OpenElisDiagnosticReportStatusVs
* identifier[uuid].system = "https://demo.openelis-global.org/analysisResult_uuid"
* status 1..1
* code.coding 1..*
* basedOn 1..1
* basedOn only Reference(OpenELISServiceRequest)
Expand All @@ -25,12 +25,12 @@ InstanceOf: OpenELISDiagnosticReport
Usage: #example
Title: "OpenElis DiagnosticReport Example"
Description: "OpenElis DiagnosticReport Example Resource"
* identifier[uuid].system = "http://openelis-global.org/analysisResult_uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/analysisResult_uuid"
* identifier[uuid].value = "f3c9cf5e-7d41-4a7d-a77b-8c0f4323a0bd"
* status = DiagnosticReportStatusCodeSystem#final
* status = #final
* code.coding[0].system = "http://loinc.org"
* code.coding[0].code = #58410-2
* code.coding[0].display = "Complete blood count (hemogram) panel - Blood by Automated count"
* code.coding[0].display = "CBC panel - Blood by Automated count"
* basedOn = Reference(OpenElisServiceRequestExample)
* specimen = Reference(OpenElisSpecimenExample)
* subject = Reference(example-openelis-patient)
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10 changes: 6 additions & 4 deletions input/fsh/OpenELISObservation.fsh
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Expand Up @@ -3,14 +3,16 @@ Parent: Observation
Id: open-elis-observation
Title: "OpenELIS Observation"
Description: "A Observation Resource used for FHIR Exchange"
* identifier 1..*
* identifier 0..*
* identifier ^slicing.discriminator.type = #value
* identifier ^slicing.discriminator.path = "system"
* identifier ^slicing.rules = #open
* identifier contains uuid 1..1
* identifier[uuid] ^sliceName = "uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/result_uuid"
* status 1..1
* code 1..1
* status from OpenELISObservationVS
* status 1..1
* value[x] 1..1
* basedOn 1..1
* basedOn only Reference(OpenELISServiceRequest)
Expand Down Expand Up @@ -41,9 +43,9 @@ InstanceOf: OpenELISObservation
Usage: #example
Title: "OpenElis Observation Example"
Description: "OpenElis Observation Example Resource"
* identifier[uuid].system = "http://openelis-global.org/result_uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/result_uuid"
* identifier[uuid].value = "158999b0-b295-4dfd-a5b0-81ed58733b5f"
* status = ObsStatusCS#final
* status = #final
* valueQuantity.value = 55
* valueQuantity.unit = "UI/L"
* basedOn = Reference(OpenElisServiceRequestExample)
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16 changes: 8 additions & 8 deletions input/fsh/OpenELISOrganization.fsh
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Expand Up @@ -8,10 +8,10 @@ Description: "A Organization Resource used for FHIR Exchange"
* identifier ^slicing.discriminator.path = "system"
* identifier ^slicing.rules = #open
* identifier contains cliaNum 1..1 and shortName 1..1 and code 1..1 and uuid 1..1
* identifier[cliaNum].system = "http://openelis-global.org/org_cliaNum"
* identifier[shortName].system = "http://openelis-global.org/org_shortName"
* identifier[code].system = "http://openelis-global.org/org_code"
* identifier[uuid].system = "http://openelis-global.org/org_uuid"
* identifier[cliaNum].system = "https://demo.openelis-global.org/org_cliaNum"
* identifier[shortName].system = "https://demo.openelis-global.org/org_shortName"
* identifier[code].system = "https://demo.openelis-global.org/org_code"
* identifier[uuid].system = "https://demo.openelis-global.org/org_uuid"
* name 1..1
* address 1..1
* type 1..*
Expand All @@ -22,13 +22,13 @@ Usage: #example
Title: "OpenELIS Organization Example"
Description: "OpenELIS Organization Example"
* id = "bc8479a5-b34b-4578-9d38-a351bc92e614"
* identifier[cliaNum].system = "http://openelis-global.org/org_cliaNum"
* identifier[cliaNum].system = "https://demo.openelis-global.org/org_cliaNum"
* identifier[cliaNum].value = "DEPT"
* identifier[shortName].system = "http://openelis-global.org/org_shortName"
* identifier[shortName].system = "https://demo.openelis-global.org/org_shortName"
* identifier[shortName].value = "EID ICAP"
* identifier[code].system = "http://openelis-global.org/org_code"
* identifier[code].system = "https://demo.openelis-global.org/org_code"
* identifier[code].value = "UG1001"
* identifier[uuid].system = "http://openelis-global.org/org_uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/org_uuid"
* identifier[uuid].value = "a1313f63-29b4-498d-ba12-0e960c683ec0"
* name = "Minity Of Health"
* address[+].line = "KING"
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1 change: 1 addition & 0 deletions input/fsh/OpenELISPractioner.fsh
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Expand Up @@ -17,6 +17,7 @@ Description: "OpenELIS Practitioner Example"
* name.family = "Mutesasira"
* name.given = "Moses"
* telecom[0].value = "+256-83434121"
* telecom[0].system = #phone


Mapping: OpenELISPractitionerMapping
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27 changes: 13 additions & 14 deletions input/fsh/OpenELISServiceRequest.fsh
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Expand Up @@ -8,17 +8,16 @@ Description: "OpenELIS service request"
* identifier ^slicing.discriminator.path = "system"
* identifier ^slicing.rules = #open
* identifier contains uuid 1..1 and labNo 1..1
* identifier[uuid].system = "http://openelis-global.org/analysis_uuid"
* identifier[labNo].system = "http://openelis-global.org/samp_labNo"
* intent from OpenElisServiceRequestIntentVs
* status from OpenElisServiceRequestStatusVs
* identifier[uuid].system = "https://demo.openelis-global.org/analysis_uuid"
* identifier[labNo].system = "https://demo.openelis-global.org/samp_labNo"
* intent 1..1
* status 1..1
* code 1..1
* code.coding 1..*
* subject only Reference(OpenELISPatient)
* encounter only Reference(Encounter)
* locationReference 1..1
* locationReference 0..*
* locationReference only Reference(Location)
* priority from OpenElisServiceRequestIntentVs
* priority 1..1
* category 0..1
* authoredOn 0..1
* note 0..1
Expand All @@ -34,19 +33,19 @@ InstanceOf: OpenELISServiceRequest
Usage: #example
Title: "OpenElis Service Request Example"
Description: "OpenElis ServiceRequest Example Resource"
* identifier[uuid].system = "http://openelis-global.org/analysis_uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/analysis_uuid"
* identifier[uuid].value = "0a65ab46-179e-4506-9fa3-09d342268576"
* identifier[labNo].system = "http://openelis-global.org/samp_labNo"
* identifier[labNo].system = "https://demo.openelis-global.org/samp_labNo"
* identifier[labNo].value = "TESTA230000000001749"
* intent = TaskIntentCodeSystem#original-order
* status = ServiceRequestStatusCodeSystem#active
* intent = #original-order
* status = #active
* specimen = Reference(OpenElisSpecimenExample)
* code.coding[0].system = "http://loinc.org"
* code.coding[0].code = #24627-2
* subject = Reference(example-openelis-patient)
* locationReference = Reference(Location)
* priority = ServiceRequestPriorityCodeSystem#routine
* category[0].coding.system = "http://openelis-global.org/sample_program"
* locationReference = Reference(LocationExample)
* priority = #routine
// * category[0].coding.system = "https://demo.openelis-global.org/sample_program"
* authoredOn = 2023-02-03
* requester = Reference(OpenELISPractitionerExample)

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15 changes: 15 additions & 0 deletions input/fsh/OpenElisLocation.fsh
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@@ -0,0 +1,15 @@
Profile: OpenELISLocation
Parent: Location
Id: open-elis-location
Title: "OpenELIS Facility Location"
Description: "A Location Resource used for FHIR Exchange"
* name 0..1
* description 0..1

Instance: LocationExample
InstanceOf: OpenELISLocation
Usage: #example
Title: "Location Example"
Description: "Health Facility Location example resource"
* name = "Outpatient Clinic"
* description = "Outpatient Clinic"
20 changes: 10 additions & 10 deletions input/fsh/OpenElisPatient.fsh
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Expand Up @@ -9,11 +9,11 @@ Description: "A patient used for OpenELIS FHIR Exchange"
* identifier ^slicing.discriminator.path = "system"
* identifier ^slicing.rules = #open
* identifier contains nationalid 1..1 and subjectnumber 1..1 and stnumber 1..1 and guid 1..1 and uuid 1..1
* identifier[nationalid].system = "http://openelis-global.org/pat_nationalId"
* identifier[subjectnumber].system = "http://openelis-global.org/pat_subjectNumber"
* identifier[stnumber].system = "http://openelis-global.org/pat_stNumber"
* identifier[guid].system = "http://openelis-global.org/pat_guid"
* identifier[uuid].system = "http://openelis-global.org/pat_uuid"
* identifier[nationalid].system = "https://demo.openelis-global.org/pat_nationalId"
* identifier[subjectnumber].system = "https://demo.openelis-global.org/pat_subjectNumber"
* identifier[stnumber].system = "https://demo.openelis-global.org/pat_stNumber"
* identifier[guid].system = "https://demo.openelis-global.org/pat_guid"
* identifier[uuid].system = "https://demo.openelis-global.org/pat_uuid"
* name 1..1
* gender 1..1
* birthDate 1..1
Expand All @@ -26,15 +26,15 @@ Usage: #example
Description: "OpenELIS Patient Example"
Title: "OpenELIS Patient Example Resource"
* id = "329f09da-0fc9-419d-9575-ace68954426A"
* identifier[nationalid].system = "http://openelis-global.org/pat_nationalId"
* identifier[nationalid].system = "https://demo.openelis-global.org/pat_nationalId"
* identifier[nationalid].value = "NA121212"
* identifier[subjectnumber].system = "http://openelis-global.org/pat_subjectNumber"
* identifier[subjectnumber].system = "https://demo.openelis-global.org/pat_subjectNumber"
* identifier[subjectnumber].value = "121213"
* identifier[stnumber].system = "http://openelis-global.org/pat_stNumber"
* identifier[stnumber].system = "https://demo.openelis-global.org/pat_stNumber"
* identifier[stnumber].value = "121214"
* identifier[guid].system = "http://openelis-global.org/pat_guid"
* identifier[guid].system = "https://demo.openelis-global.org/pat_guid"
* identifier[guid].value = "329f09da-0fc9-419d-9575-ace689544229"
* identifier[uuid].system = "http://openelis-global.org/pat_uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/pat_uuid"
* identifier[uuid].value = "329f09da-0fc9-419d-9575-ace689544269"
* birthDate = "1988-03-02"
* gender = #male
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12 changes: 6 additions & 6 deletions input/fsh/OpenElisSpecimen.fsh
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Expand Up @@ -8,11 +8,11 @@ Description: "A Specimen Resource used for FHIR Exchange"
* identifier ^slicing.discriminator.path = "system"
* identifier ^slicing.rules = #open
* identifier contains uuid 1..1
* identifier[uuid].system = "http://openelis-global.org/sampleItem_uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/sampleItem_uuid"
* accessionIdentifier 1..1
* type 1..1
* status 1..1
* status from OpenElisSpecimenStatusVS
* status 1..1
* receivedTime 1..1
* collection 1..1
* collection.collectedDateTime 1..1
Expand Down Expand Up @@ -42,13 +42,13 @@ InstanceOf: OpenElisSpecimen
Usage: #example
Title: "OpenElis Specimen Example"
Description: "OpenElis Specimen Example Resource"
* accessionIdentifier[0].system = "http://openelis-global.org/sampleItem_labNo"
* accessionIdentifier[0].system = "https://demo.openelis-global.org/sampleItem_labNo"
* accessionIdentifier[0].value = "TESTA230000000001751"
* identifier[uuid].system = "http://openelis-global.org/sampleItem_uuid"
* identifier[uuid].system = "https://demo.openelis-global.org/sampleItem_uuid"
* identifier[uuid].value = "9df49e2d-57f7-4e7b-abb1-54d0a1933253"
* type.coding.system = "http://openelis-global.org/sampleType"
* type.coding.system = "http://loinc.org"
* type.coding.display = "Plasma"
* status = SpecimenStatusCodeSystem#available
* status = #available
* receivedTime = "2023-03-03T07:03:00Z"
* collection.collectedDateTime = 2023-02-03
* request = Reference(OpenElisServiceRequestExample)
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8 changes: 4 additions & 4 deletions input/fsh/OpenElisTask.fsh
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Expand Up @@ -10,8 +10,8 @@ Description: "A Task resource for tracking order state"
* encounter only Reference(Encounter)
* owner only Reference(Practitioner or Organization or HealthcareService)
* authoredOn 1..1
* status from OpenELISTaskStatusVS
* intent from OpenELISTaskIntentVS
* status 1..1
* intent 1..1
* output.type.text = "DiagnosticReport"
* output.value[x] only Reference(OpenELISDiagnosticReport)

Expand All @@ -37,8 +37,8 @@ Usage: #example
Title: "OpenElis Task Example"
Description: "OpenElis Task Example Resource"
* id = "49ef249a-3a8b-49e3-9e16-7e56e92d0c77"
* intent = TaskIntentCodeSystem#order
* status = TaskStatusCodeSystem#in-progress
* intent = #order
* status = #in-progress
* basedOn = Reference(OpenElisServiceRequestExample)
* for = Reference(example-openelis-patient)
* owner = Reference(OpenELISPractitionerExample)
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57 changes: 0 additions & 57 deletions input/fsh/ValueSet.fsh
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10 changes: 5 additions & 5 deletions sushi-config.yaml
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Expand Up @@ -5,11 +5,11 @@ name: OpenELISImplementationGuide
title: OpenELIS GLOBAL2 Implementation Guide
status: draft
publisher: I-TECH-UW
contact:
- name: I-TECH-UW
telecom:
- system: url
value: www.github.com/i-tech-uw
# contact:
# - name: I-TECH-UW
# telecom:
# - system: url
# value: https://i-tech-uw.github.io/openelis-global2-fhir-ig
description: An Implementation Guide covering the OpenELIS GLOBAL2 implementation of FHIR
license: CC-BY-SA-4.0
fhirVersion: 4.0.1
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