Continuing on the refactoring of apex going slower than expected

FAIRmat-NFDI · Sep 3, 2024 · 8142fd2 · 8142fd2
1 parent 8a98ea7
commit 8142fd2
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Showing 7 changed files with 371 additions and 788 deletions.
diff --git a/.vscode/launch.json b/.vscode/launch.json
@@ -6,11 +6,11 @@
     "configurations": [
         {
             "name": "pynx-em debug",
-            "type": "debugpy",
+            "type": "python",
             "request": "launch",
             "cwd": "${workspaceFolder}",
             "program": "../.py3.12.4/bin/dataconverter",
-            "args": ["convert",
+            "args": [//"convert",
                      // eln_data/oasis_specific
                      //"examples/em.conventions.yaml",
                      //"examples/eln_data.yaml",
@@ -39,7 +39,7 @@
                      //"../apex/InGaN_nanowires_map.edaxh5",
                      //"../apex/InGaN_nanowires_spectra.edaxh5",
                      //"tests/data/2023-08-16_Ni_NFDI.edaxh5",
-                     "tests/data/173_0057.h5oina",
+                     "tests/data/hfive_oxford/173_0057.h5oina",
                      "--reader",
                      "em",
                      "--nxdl",
@@ -57,7 +57,7 @@
                      //"--output=pynxtools_em/dbg/zeiss.nxs",
                      //"--output=pynxtools_em/dbg/tfs.nxs",
                      //"--output=dbg/apex.nxs"
-                     "--output=dbg/hfive_oxford.nxs",
+                     "--output=dbg/hfive_oxford.nxs"]
                      //"--output=dbg/hfive_apex.nxs"],
         }
     ]

diff --git a/src/pynxtools_em/concepts/nxs_em_eds_indexing.py b/src/pynxtools_em/concepts/nxs_em_eds_indexing.py
diff --git a/src/pynxtools_em/concepts/nxs_image_set.py b/src/pynxtools_em/concepts/nxs_image_set.py
diff --git a/src/pynxtools_em/concepts/nxs_object.py b/src/pynxtools_em/concepts/nxs_object.py
diff --git a/src/pynxtools_em/concepts/nxs_spectrum_set.py b/src/pynxtools_em/concepts/nxs_spectrum_set.py