Skip to content

Commit

Permalink
Docs for running on Truwl
Browse files Browse the repository at this point in the history
  • Loading branch information
ksebby authored and ottojolanki committed Jul 15, 2021
1 parent 75bbaf8 commit f60fa59
Showing 1 changed file with 7 additions and 1 deletion.
8 changes: 7 additions & 1 deletion docs/howto.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,8 @@ Note that the files used in these exampled are first restricted to reads from ch

# CONTENTS

[Google Cloud](howto.md#google-cloud)
[Google Cloud](howto.md#google-cloud)
[Truwl](howto.md#truwl)
[Local with Docker](howto.md#local-with-docker)
[Local with Singularity](howto.md#local-with-singularity)
[Other Platforms](howto.md#other-platforms)
Expand Down Expand Up @@ -95,6 +96,11 @@ Replace `[YOUR_BUCKET_NAME]` with the name of the bucket you created.

This command will output into the bucket an HTML table, that shows the locations of the outputs nicely organized. Note that if your output bucket is not public, you need to be logged into your google account to be able to follow the links.

## Truwl

You can run this pipeline on [truwl.com](https://truwl.com/). This provides a web interface that allows you to define inputs and parameters, run the job on GCP, and monitor progress in a ready-to-go environment. To run it you will need to create an account on the platform then request early access by emailing [info@truwl.com](mailto:info@truwl.com) to get the right permissions. You can see the paired-end stranded example case from this repo [here](https://truwl.com/workflows/library/RNA-seq%20pipeline/v1.2.1/instances/WF_0741dc.ac.1e10). The example job (or other jobs) can be forked to pre-populate the inputs for your own job.

If you do not run the pipeline on Truwl, you can still share your use-case/job on the platform by getting in touch at [info@truwl.com](mailto:info@truwl.com) and providing your inputs.json file.

## Local with Docker

Expand Down

0 comments on commit f60fa59

Please sign in to comment.