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Merge pull request #716 from EBISPOT/v2-api-numeric-inconsistencies
V2 api numeric inconsistencies
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,57 @@ | ||
| { | ||
| "name": "OBO Foundry", | ||
| "title": "The OBO Foundry", | ||
| "markdown": "kramdown", | ||
| "highlighter": "rouge", | ||
| "baseurl": "/", | ||
| "imgurl": "/images", | ||
| "repo": "https://github.com/OBOFoundry/OBOFoundry.github.io/", | ||
| "repo_src": "https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/", | ||
| "author": { | ||
| "name": "OBO Technical WG" | ||
| }, | ||
| "ontologies": [ | ||
| { | ||
| "activity_status": "active", | ||
| "build": { | ||
| "checkout": "git clone https://github.com/Superraptor/GSSO.git", | ||
| "path": ".", | ||
| "system": "git" | ||
| }, | ||
| "contact": { | ||
| "email": "kronkcj@mail.uc.edu", | ||
| "github": "Superraptor", | ||
| "label": "Clair Kronk", | ||
| "orcid": "0000-0001-8397-8810" | ||
| }, | ||
| "description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences.", | ||
| "domain": "organisms", | ||
| "homepage": "https://gsso.research.cchmc.org/", | ||
| "id": "gsso", | ||
| "layout": "ontology_detail", | ||
| "license": { | ||
| "label": "Apache 2.0 License", | ||
| "url": "http://www.apache.org/licenses/LICENSE-2.0" | ||
| }, | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/gsso.owl", | ||
| "preferredPrefix": "GSSO", | ||
| "products": [ | ||
| { | ||
| "id": "gsso.owl", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/gsso.owl" | ||
| }, | ||
| { | ||
| "id": "gsso.obo", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/gsso.obo" | ||
| }, | ||
| { | ||
| "id": "gsso.json", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/gsso.json" | ||
| } | ||
| ], | ||
| "repository": "https://github.com/Superraptor/GSSO", | ||
| "title": "Gender, Sex, and Sexual Orientation (GSSO) ontology", | ||
| "tracker": "https://github.com/Superraptor/GSSO/issues" | ||
| } | ||
| ] | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,110 @@ | ||
| { | ||
| "name": "OBO Foundry", | ||
| "title": "The OBO Foundry", | ||
| "markdown": "kramdown", | ||
| "highlighter": "rouge", | ||
| "baseurl": "/", | ||
| "imgurl": "/images", | ||
| "repo": "https://github.com/OBOFoundry/OBOFoundry.github.io/", | ||
| "repo_src": "https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/", | ||
| "author": { | ||
| "name": "OBO Technical WG" | ||
| }, | ||
| "ontologies": [ | ||
| { | ||
| "activity_status": "active", | ||
| "browsers": [ | ||
| { | ||
| "label": "HPO", | ||
| "title": "JAX HPO Browser", | ||
| "url": "https://hpo.jax.org/app/" | ||
| }, | ||
| { | ||
| "label": "Monarch", | ||
| "title": "Monarch Phenotype Page", | ||
| "url": "http://monarchinitiative.org/phenotype/HP:0000118" | ||
| } | ||
| ], | ||
| "build": { | ||
| "infallible": 1, | ||
| "method": "archive", | ||
| "path": "archive/hp", | ||
| "source_url": "http://compbio.charite.de/hudson/job/hpo/lastSuccessfulBuild/artifact/*zip*/archive.zip" | ||
| }, | ||
| "contact": { | ||
| "email": "dr.sebastian.koehler@gmail.com", | ||
| "github": "drseb", | ||
| "label": "Sebastian Koehler", | ||
| "orcid": "0000-0002-5316-1399" | ||
| }, | ||
| "depicted_by": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/logo/HPO-logo-black_small.png", | ||
| "description": "A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.", | ||
| "domain": "phenotype", | ||
| "homepage": "http://www.human-phenotype-ontology.org/", | ||
| "id": "hp", | ||
| "jobs": [ | ||
| { | ||
| "id": "https://travis-ci.org/obophenotype/human-phenotype-ontology", | ||
| "type": "travis-ci" | ||
| } | ||
| ], | ||
| "layout": "ontology_detail", | ||
| "license": { | ||
| "label": "hpo", | ||
| "url": "https://hpo.jax.org/app/license" | ||
| }, | ||
| "mailing_list": "https://groups.io/g/human-phenotype-ontology", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/hp.owl", | ||
| "preferredPrefix": "HP", | ||
| "products": [ | ||
| { | ||
| "id": "hp.owl", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/hp.owl" | ||
| }, | ||
| { | ||
| "id": "hp.obo", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/hp.obo" | ||
| } | ||
| ], | ||
| "publications": [ | ||
| { | ||
| "id": "https://www.ncbi.nlm.nih.gov/pubmed/18950739", | ||
| "title": "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." | ||
| }, | ||
| { | ||
| "id": "https://www.ncbi.nlm.nih.gov/pubmed/26119816", | ||
| "title": "The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease." | ||
| }, | ||
| { | ||
| "id": "https://www.ncbi.nlm.nih.gov/pubmed/24217912", | ||
| "title": "The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data." | ||
| }, | ||
| { | ||
| "id": "https://www.ncbi.nlm.nih.gov/pubmed/30476213", | ||
| "title": "Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources." | ||
| } | ||
| ], | ||
| "repository": "https://github.com/obophenotype/human-phenotype-ontology", | ||
| "taxon": { | ||
| "id": "NCBITaxon:9606", | ||
| "label": "Homo sapiens" | ||
| }, | ||
| "title": "Human Phenotype Ontology", | ||
| "tracker": "https://github.com/obophenotype/human-phenotype-ontology/issues/", | ||
| "twitter": "hp_ontology", | ||
| "usages": [ | ||
| { | ||
| "description": "HPO is used by the Monarch Initiative for phenotype annotations.", | ||
| "examples": [ | ||
| { | ||
| "url": "https://monarchinitiative.org/phenotype/HP:0001300" | ||
| } | ||
| ], | ||
| "reference": "https://academic.oup.com/nar/article/45/D1/D712/2605791", | ||
| "type": "annotation", | ||
| "user": "https://monarchinitiative.org/" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,96 @@ | ||
| { | ||
| "name": "OBO Foundry", | ||
| "title": "The OBO Foundry", | ||
| "markdown": "kramdown", | ||
| "highlighter": "rouge", | ||
| "baseurl": "/", | ||
| "imgurl": "/images", | ||
| "repo": "https://github.com/OBOFoundry/OBOFoundry.github.io/", | ||
| "repo_src": "https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/", | ||
| "author": { | ||
| "name": "OBO Technical WG" | ||
| }, | ||
| "ontologies": [ | ||
| { | ||
| "activity_status": "active", | ||
| "browsers": [ | ||
| { | ||
| "label": "OLS", | ||
| "title": "Ontology Lookup Service", | ||
| "url": "https://www.ebi.ac.uk/ols/ontologies/kisao" | ||
| }, | ||
| { | ||
| "label": "BioPortal", | ||
| "title": "BioPortal", | ||
| "url": "https://bioportal.bioontology.org/ontologies/KISAO" | ||
| }, | ||
| { | ||
| "label": "OntoBee", | ||
| "title": "OntoBee", | ||
| "url": "https://www.ontobee.org/ontology/KISAO" | ||
| } | ||
| ], | ||
| "build": { | ||
| "method": "owl2obo", | ||
| "source_url": "https://raw.githubusercontent.com/SED-ML/KiSAO/deploy/kisao.owl" | ||
| }, | ||
| "contact": { | ||
| "email": "jonrkarr@gmail.com", | ||
| "github": "jonrkarr", | ||
| "label": "Jonathan Karr", | ||
| "orcid": "0000-0002-2605-5080" | ||
| }, | ||
| "description": "A classification of algorithms for simulating biology, their parameters, and their outputs", | ||
| "domain": "simulation", | ||
| "funded_by": [ | ||
| "NIH P41EB023912", | ||
| "NIH R35GM119771" | ||
| ], | ||
| "homepage": "https://github.com/SED-ML/KiSAO", | ||
| "id": "kisao", | ||
| "layout": "ontology_detail", | ||
| "license": { | ||
| "label": "Artistic License 2.0", | ||
| "url": "http://opensource.org/licenses/Artistic-2.0" | ||
| }, | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/kisao.owl", | ||
| "preferredPrefix": "KISAO", | ||
| "products": [ | ||
| { | ||
| "id": "kisao.owl", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/kisao.owl" | ||
| } | ||
| ], | ||
| "publications": [ | ||
| { | ||
| "id": "https://www.ncbi.nlm.nih.gov/pubmed/22027554", | ||
| "title": "Controlled vocabularies and semantics in systems biology" | ||
| } | ||
| ], | ||
| "releases": "https://github.com/SED-ML/KiSAO/releases", | ||
| "repository": "https://github.com/SED-ML/KiSAO", | ||
| "tags": [ | ||
| "systems biology", | ||
| "computational biology", | ||
| "mathematical modeling", | ||
| "numerical simulation", | ||
| "simulation algorithms" | ||
| ], | ||
| "title": "Kinetic Simulation Algorithm Ontology", | ||
| "tracker": "https://github.com/SED-ML/KiSAO/issues", | ||
| "usages": [ | ||
| { | ||
| "description": "The Simulation Experiment Description Markup Language (SED-ML) is a language for describing simulations and visualizations of their results.", | ||
| "examples": [ | ||
| { | ||
| "description": "Several examples of simulations encoded in SED-ML", | ||
| "url": "https://sed-ml.org/examples.html" | ||
| } | ||
| ], | ||
| "type": "annotation", | ||
| "user": "https://sed-ml.org/" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| { | ||
| "name": "OBO Foundry", | ||
| "title": "The OBO Foundry", | ||
| "markdown": "kramdown", | ||
| "highlighter": "rouge", | ||
| "baseurl": "/", | ||
| "imgurl": "/images", | ||
| "repo": "https://github.com/OBOFoundry/OBOFoundry.github.io/", | ||
| "repo_src": "https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/", | ||
| "author": { | ||
| "name": "OBO Technical WG" | ||
| }, | ||
| "ontologies": [ | ||
| { | ||
| "activity_status": "active", | ||
| "build": { | ||
| "insert_ontology_id": true, | ||
| "method": "obo2owl", | ||
| "source_url": "http://www.ebi.ac.uk/sbo/exports/Main/SBO_OBO.obo" | ||
| }, | ||
| "contact": { | ||
| "email": "sheriff@ebi.ac.uk", | ||
| "github": "rsmsheriff", | ||
| "label": "Rahuman Sheriff", | ||
| "orcid": "0000-0003-0705-9809" | ||
| }, | ||
| "description": "Terms commonly used in Systems Biology, and in particular in computational modeling.", | ||
| "domain": "chemistry and biochemistry", | ||
| "homepage": "http://www.ebi.ac.uk/sbo/", | ||
| "id": "sbo", | ||
| "layout": "ontology_detail", | ||
| "license": { | ||
| "label": "Artistic License 2.0", | ||
| "url": "http://opensource.org/licenses/Artistic-2.0" | ||
| }, | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/sbo.owl", | ||
| "preferredPrefix": "SBO", | ||
| "products": [ | ||
| { | ||
| "id": "sbo.owl", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/sbo.owl" | ||
| } | ||
| ], | ||
| "repository": "https://github.com/EBI-BioModels/SBO", | ||
| "title": "Systems Biology Ontology", | ||
| "tracker": "https://github.com/EBI-BioModels/SBO/issues" | ||
| } | ||
| ] | ||
| } |
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