updated for tox

COSC-Lab · Jun 19, 2024 · 4e1fd06 · 4e1fd06
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diff --git a/...apari_fast4dreg/_tests/Rotation-Drift.svg → example_files/Rotation-Drift.svg b/...apari_fast4dreg/_tests/Rotation-Drift.svg → example_files/Rotation-Drift.svg
diff --git a/src/napari_fast4dreg/_tests/XY-Drfit.svg → example_files/XY-Drfit.svg b/src/napari_fast4dreg/_tests/XY-Drfit.svg → example_files/XY-Drfit.svg
diff --git a/src/napari_fast4dreg/_tests/Z-Drift.svg → example_files/Z-Drift.svg b/src/napari_fast4dreg/_tests/Z-Drift.svg → example_files/Z-Drift.svg
diff --git a/src/napari_fast4dreg/_tests/drifts.csv → example_files/drifts.csv b/src/napari_fast4dreg/_tests/drifts.csv → example_files/drifts.csv
diff --git a/src/napari_fast4dreg/_tests/registered.tif → example_files/registered.tif b/src/napari_fast4dreg/_tests/registered.tif → example_files/registered.tif
diff --git a/src/napari_fast4dreg/_tests/tmp_data/0.npy → example_files/tmp_data/0.npy b/src/napari_fast4dreg/_tests/tmp_data/0.npy → example_files/tmp_data/0.npy
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diff --git a/src/napari_fast4dreg/_tests/tmp_data/14.npy → example_files/tmp_data/14.npy b/src/napari_fast4dreg/_tests/tmp_data/14.npy → example_files/tmp_data/14.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/15.npy → example_files/tmp_data/15.npy b/src/napari_fast4dreg/_tests/tmp_data/15.npy → example_files/tmp_data/15.npy
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diff --git a/src/napari_fast4dreg/_tests/tmp_data/19.npy → example_files/tmp_data/19.npy b/src/napari_fast4dreg/_tests/tmp_data/19.npy → example_files/tmp_data/19.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/2.npy → example_files/tmp_data/2.npy b/src/napari_fast4dreg/_tests/tmp_data/2.npy → example_files/tmp_data/2.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/20.npy → example_files/tmp_data/20.npy b/src/napari_fast4dreg/_tests/tmp_data/20.npy → example_files/tmp_data/20.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/3.npy → example_files/tmp_data/3.npy b/src/napari_fast4dreg/_tests/tmp_data/3.npy → example_files/tmp_data/3.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/4.npy → example_files/tmp_data/4.npy b/src/napari_fast4dreg/_tests/tmp_data/4.npy → example_files/tmp_data/4.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/5.npy → example_files/tmp_data/5.npy b/src/napari_fast4dreg/_tests/tmp_data/5.npy → example_files/tmp_data/5.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/6.npy → example_files/tmp_data/6.npy b/src/napari_fast4dreg/_tests/tmp_data/6.npy → example_files/tmp_data/6.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/7.npy → example_files/tmp_data/7.npy b/src/napari_fast4dreg/_tests/tmp_data/7.npy → example_files/tmp_data/7.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/8.npy → example_files/tmp_data/8.npy b/src/napari_fast4dreg/_tests/tmp_data/8.npy → example_files/tmp_data/8.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/9.npy → example_files/tmp_data/9.npy b/src/napari_fast4dreg/_tests/tmp_data/9.npy → example_files/tmp_data/9.npy
diff --git a/src/napari_fast4dreg/_tests/tmp_data/info → example_files/tmp_data/info b/src/napari_fast4dreg/_tests/tmp_data/info → example_files/tmp_data/info
diff --git a/...noid_timelapse_ch0_cytosol_ch1_nuclei.tif → ...noid_timelapse_ch0_cytosol_ch1_nuclei.tif b/...noid_timelapse_ch0_cytosol_ch1_nuclei.tif → ...noid_timelapse_ch0_cytosol_ch1_nuclei.tif
diff --git a/src/napari_fast4dreg/_tests/test_input.tif b/src/napari_fast4dreg/_tests/test_input.tif
diff --git a/src/napari_fast4dreg/_tests/test_widget.py b/src/napari_fast4dreg/_tests/test_widget.py
@@ -4,15 +4,20 @@
 from napari_fast4dreg._widget import Fast4DReg_widget
 
 def test_Fast4DReg_widget():
-    test_image = tifffile.imread('test_input.tif')
-    reference_registered_image = tifffile.imread('registered.tif')
+    # working path is napari-fast4dreg/napari-fast4dreg/
+    # 
+
+    test_image = tifffile.imread('example_files/xtitched_organoid_timelapse_ch0_cytosol_ch1_nuclei.tif')
+    reference_registered_image = tifffile.imread('example_files/registered.tif')
+    out_folder = 'example_files/'
     resgistered_image = Fast4DReg_widget(image = test_image,
                                         axes = 1, 
-                                        output_path = r"E:\Data_Leuven\Fast4DReg_Dask\plugin_output_trial", 
+                                        output_path = out_folder, 
                                         ref_channel = r"1", 
                                         correct_xy = True,
                                         correct_z = True,
                                         correct_center_rotation = True,
                                         crop_output = True, 
                                         export_csv = True )
+
     assert resgistered_image == reference_registered_image