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typo found in "P|R"
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ChristinaSchmidt1 authored Jan 16, 2025
1 parent 898d059 commit c0781d5
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion R/sircleRCM.R
Original file line number Diff line number Diff line change
Expand Up @@ -566,7 +566,7 @@ sircleRCM_RP <- function(rnaFile, protFile, geneID, rnaValueCol="Log2FC", rnaPad
dplyr::mutate_at(c("proteinDF_Cutoff_Specific"), ~tidyr::replace_na(.,"Not Detected"))

#Apply Background filter (label genes that will be removed based on choosen background)
if(backgroundMethod == "P|R)"){# P|R = Protein OR RNA
if(backgroundMethod == "P|R"){# P|R = Protein OR RNA
MergeDF <- MergeDF%>%
dplyr::mutate(BG_Method = dplyr::case_when(rnaDF_Detected=="TRUE" & proteinDF_Detected=="TRUE" ~ 'TRUE', # RNA & Protein
rnaDF_Detected=="TRUE" & proteinDF_Detected=="FALSE" ~ 'TRUE', # Just RNA
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