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Prediction of AAV capsid fitness from VP1 protein sequence; written in Jax with PyTorch dataloaders

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
models		models
.gitignore		.gitignore
README.md		README.md
dataloader.py		dataloader.py
likelihood_fns.py		likelihood_fns.py
loss_fns.py		loss_fns.py
utils.py		utils.py

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To Do

(DONE) dataloaders
- (DONE) supportive utils
(DONE) loss functions
basic models
- NEW: mamba
NEW: model initializers
train_one_batch
eval_one_batch
training wrapper
eval wrapper
NEW: CLI + JSON interface

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Prediction of AAV capsid fitness from VP1 protein sequence; written in Jax with PyTorch dataloaders

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