GitHub - zlye/NF_smoove: nextflow pipeline for calling structural variants using smoove (Lumpy for groups)

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nextflow pipeline for calling structural variants using smoove (Lumpy for groups)

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Name		Name	Last commit message	Last commit date
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README		README
smoove.config		smoove.config
smoove.nf		smoove.nf

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This is a nextflow pipeline for calling SVs using the SMOOVE implementation of Lumpy:

https://github.com/brentp/smoove

Pedersen, B. S., Layer, R., & Quinlan, A. R. (2020).
smoove: structural-variant calling and genotyping with existing tools (Version 0.2.8) [Computer software]