Missing juicebox.sh | YaHS

[RozimovAkbarjon]

After producing 01.cluster, 02.reassign, and 03.sort; I'm facing to run juicebox.sh. The error indicating the missing juicebox.sh.

(haphic) [Akbarjon@snailfish 6.Pkau-haphic]$ cat haphic.err3
sed: can't read juicebox.sh: No such file or directory
sed: can't read juicebox.sh: No such file or directory
bash: juicebox.sh: No such file or directory

How can I resolve this issue?

Script:

(4) Juicebox Curation

if [ -f "${WORKDIR}/04.build/out_JBAT.hic" ]; then
echo "Juicebox curation already completed. Skipping Juicebox step."
else
echo "Step 4: Running Juicebox curation..."
cd ${WORKDIR}/04.build
mkdir -p ${WORKDIR}/04.build/tempdir
sed -i 's/-Xmx32G/-Xmx500G/' juicebox.sh
sed -i "s#java#java -Djava.io.tmpdir=${WORKDIR}/04.build/tempdir#" juicebox.sh

Run Juicebox

bash juicebox.sh
if [ $? -ne 0 ]; then
    echo "Error during Juicebox curation."
    exit 1
fi

[zengxiaofei]

Hi @RozimovAkbarjon;

Which version of HapHiC did you use? Was the 04.build directory generated correctly? If you can provide the log output from HapHiC, it will help me to figure out what happened.