Genetorch

Get information from large number of vcf files annotated via SnpEff.
Get candidate from a big scale (usually 100 per group) suppressor screening of C.elegans or other model animals with next generation sequencing and without mapping.
Summary of multiple mutation spots on one protein via analyzing the distance between each spot.

Name		Name	Last commit message	Last commit date
Latest commit History 73 Commits
.idea		.idea
Gangler		Gangler
dumpy		dumpy
genetorch		genetorch
tbb-4		tbb-4
A_distribution.svg		A_distribution.svg
A_mut.svg		A_mut.svg
CELE_LASSO_prepare.py		CELE_LASSO_prepare.py
CELE_genome.py		CELE_genome.py
CELE_gff.py		CELE_gff.py
CELE_gtt.py		CELE_gtt.py
CELE_proteome.py		CELE_proteome.py
CELE_transcriptome.py		CELE_transcriptome.py
C_distribution.svg		C_distribution.svg
C_mut.svg		C_mut.svg
EMS_mutation.csv		EMS_mutation.csv
G_distribution.svg		G_distribution.svg
G_mut.svg		G_mut.svg
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Paper findal edition.docx		Paper findal edition.docx
README.md		README.md
T_distribution.svg		T_distribution.svg
T_mut.svg		T_mut.svg
WBcel235_cds.fa		WBcel235_cds.fa
align.py		align.py
code_slide.py		code_slide.py
codon_mutation		codon_mutation
codon_usage		codon_usage
crisp2csv.py		crisp2csv.py
cross_val.py		cross_val.py
cross_val_score.py		cross_val_score.py
data.txt		data.txt
discussion.pptx		discussion.pptx
gene_range		gene_range
genome		genome
outliers_remove.py		outliers_remove.py
paper.docx		paper.docx
plotly_test.py		plotly_test.py
random forest script.py		random forest script.py
random_froest_outlier.py		random_froest_outlier.py
rfr_cal_and_plot.py		rfr_cal_and_plot.py
setup.py		setup.py
smaller script.py		smaller script.py
stock_script_windows.py		stock_script_windows.py
tbb_v.jpg		tbb_v.jpg
tbb_x.jpg		tbb_x.jpg
vcf2csv.py		vcf2csv.py
vcf_filter.py		vcf_filter.py
wbid		wbid
~$per findal edition.docx		~$per findal edition.docx

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