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ScanNeo2 v0.2.7
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@riasc riasc released this 25 Jun 05:06
· 23 commits to main since this release
v0.2.7
7dcdff8
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Learn about vigilant mode.

Fix

  • Separated samtools, bcftools and realign environments to avoid conflicts
  • Changed order of genotyping rules to catch errors when no alleles can be found
    • Alleles are merged according to nartype (e.g., DNA, RNA) and then combined
  • Force concat of VCF files in genotyping to avoid errors when no variants are found
  • Added optitype wrapper to avoid errors when empty BAM files are provided / no HLA reads
Assets 3
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