added tests for decoy file in conjunction to --aggregate

wfondrie · Jul 20, 2021 · 0542a5f · 0542a5f
1 parent d69167f
commit 0542a5f
Showing 1 changed file with 8 additions and 0 deletions.
diff --git a/tests/system_tests/test_cli.py b/tests/system_tests/test_cli.py
@@ -114,6 +114,14 @@ def test_cli_aggregate(tmp_path, scope_files):
     subprocess.run(cmd, check=True)
     assert Path(tmp_path, "blah.mokapot.psms.txt").exists()
     assert Path(tmp_path, "blah.mokapot.peptides.txt").exists()
+    assert not Path(tmp_path, "blah.mokapot.decoy.psms.txt").exists()
+    assert not Path(tmp_path, "blah.mokapot.decoy.peptides.txt").exists()
+
+    # Test that decoys are also in the output when --keep_decoys is used
+    cmd += ["--keep_decoys"]
+    subprocess.run(cmd, check=True)
+    assert Path(tmp_path, "blah.mokapot.decoy.psms.txt").exists()
+    assert Path(tmp_path, "blah.mokapot.decoy.peptides.txt").exists()
 
 
 def test_cli_fasta(tmp_path, phospho_files):