update test-coverage

waldronlab · Feb 7, 2025 · 5c9cbd7 · 5c9cbd7
1 parent 7b7a2d0
commit 5c9cbd7
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Showing 2 changed files with 9 additions and 6 deletions.
diff --git a/.github/workflows/pr_check.yml b/.github/workflows/pr_check.yml
@@ -25,7 +25,7 @@ jobs:
           echo "CRAN=https://packagemanager.posit.co/cran/__linux__/${CODENAME}/latest" >> "$GITHUB_ENV"
 
       - name: Checkout Repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Query dependencies
         run: |

diff --git a/.github/workflows/test-coverage.yml b/.github/workflows/test-coverage.yml
@@ -15,16 +15,19 @@ jobs:
   test-coverage:
     runs-on: ubuntu-latest
     container: bioconductor/bioconductor_docker:devel
+
     env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v4
+      - name: Get Ubuntu Codename and Set CRAN URL
+        run: |
+          CODENAME=$(lsb_release -cs)
+          echo "CRAN=https://packagemanager.posit.co/cran/__linux__/${CODENAME}/latest" >> "$GITHUB_ENV"
 
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-          r-version: devel
+      - name: Checkout Repository
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with: