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*.npy | ||
*.csv | ||
old/ | ||
experiments/ | ||
results/ | ||
res/ | ||
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test/ | ||
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*.ipynb | ||
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*.cover | ||
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# Translations | ||
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# Django stuff: | ||
*.log | ||
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# Flask stuff: | ||
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# Scrapy stuff: | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
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# Jupyter Notebook | ||
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# IPython | ||
profile_default/ | ||
ipython_config.py | ||
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# pyenv | ||
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# pipenv | ||
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. | ||
# However, in case of collaboration, if having platform-specific dependencies or dependencies | ||
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# install all needed dependencies. | ||
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow | ||
__pypackages__/ | ||
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# Celery stuff | ||
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# Spyder project settings | ||
.spyderproject | ||
.spyproject | ||
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# Rope project settings | ||
.ropeproject | ||
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# mkdocs documentation | ||
/site | ||
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# mypy | ||
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kernels/ |
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# LCODEC_Deep_Unlearning_CVPR22 | ||
Code for CVPR22 paper "Deep Unlearning via Randomized Conditionally Independent Hessians" | ||
# Deep Unlearning via Randomized Conditionally Independent Hessians (CVPR 2022) | ||
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All experiments are run within the specified folders, and call out to 'codec'. | ||
Navigate to each folder for example scripts and directions on how to run in __expname__/README.md. |
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To run Bullseye comparisons, navigate to model-augmented-mutual-information and run `roc_gen.sh'. | ||
For feature mappings, uncomment line 75 in roc_gen.py to enable training mapping. | ||
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Note: We have adapted code for the paper: [Model-Augmented Conditional Mutual Information Estimation for Feature Selection (UAI 2020)](https://github.com/syanga/model-augmented-mutual-information) and also [pycit](https://github.com/syanga/pycit). Hence, we have added the modified sources here. |
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bullseye/model-augmented-mutual-information-master/.gitignore
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# Byte-compiled / optimized / DLL files | ||
__pycache__/ | ||
*.py[cod] | ||
*$py.class | ||
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.vscode/ | ||
data/ | ||
.DS_Store | ||
saved/ | ||
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# C extensions | ||
*.so | ||
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# Distribution / packaging | ||
.Python | ||
build/ | ||
develop-eggs/ | ||
dist/ | ||
downloads/ | ||
eggs/ | ||
.eggs/ | ||
lib/ | ||
lib64/ | ||
parts/ | ||
sdist/ | ||
var/ | ||
wheels/ | ||
pip-wheel-metadata/ | ||
share/python-wheels/ | ||
*.egg-info/ | ||
.installed.cfg | ||
*.egg | ||
MANIFEST | ||
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||
# PyInstaller | ||
# Usually these files are written by a python script from a template | ||
# before PyInstaller builds the exe, so as to inject date/other infos into it. | ||
*.manifest | ||
*.spec | ||
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# Installer logs | ||
pip-log.txt | ||
pip-delete-this-directory.txt | ||
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# Unit test / coverage reports | ||
htmlcov/ | ||
.tox/ | ||
.nox/ | ||
.coverage | ||
.coverage.* | ||
.cache | ||
nosetests.xml | ||
coverage.xml | ||
*.cover | ||
*.py,cover | ||
.hypothesis/ | ||
.pytest_cache/ | ||
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# Translations | ||
*.mo | ||
*.pot | ||
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# Django stuff: | ||
*.log | ||
local_settings.py | ||
db.sqlite3 | ||
db.sqlite3-journal | ||
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# Flask stuff: | ||
instance/ | ||
.webassets-cache | ||
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# Scrapy stuff: | ||
.scrapy | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
target/ | ||
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||
# Jupyter Notebook | ||
.ipynb_checkpoints | ||
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||
# IPython | ||
profile_default/ | ||
ipython_config.py | ||
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# pyenv | ||
.python-version | ||
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||
# pipenv | ||
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. | ||
# However, in case of collaboration, if having platform-specific dependencies or dependencies | ||
# having no cross-platform support, pipenv may install dependencies that don't work, or not | ||
# install all needed dependencies. | ||
#Pipfile.lock | ||
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow | ||
__pypackages__/ | ||
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# Celery stuff | ||
celerybeat-schedule | ||
celerybeat.pid | ||
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||
# SageMath parsed files | ||
*.sage.py | ||
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||
# Environments | ||
.env | ||
.venv | ||
env/ | ||
venv/ | ||
ENV/ | ||
env.bak/ | ||
venv.bak/ | ||
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||
# Spyder project settings | ||
.spyderproject | ||
.spyproject | ||
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# Rope project settings | ||
.ropeproject | ||
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# mkdocs documentation | ||
/site | ||
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# mypy | ||
.mypy_cache/ | ||
.dmypy.json | ||
dmypy.json | ||
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# Pyre type checker | ||
.pyre/ |
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bullseye/model-augmented-mutual-information-master/LICENSE
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MIT License | ||
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Copyright (c) 2020 Alan Yang | ||
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Permission is hereby granted, free of charge, to any person obtaining a copy | ||
of this software and associated documentation files (the "Software"), to deal | ||
in the Software without restriction, including without limitation the rights | ||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
copies of the Software, and to permit persons to whom the Software is | ||
furnished to do so, subject to the following conditions: | ||
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The above copyright notice and this permission notice shall be included in all | ||
copies or substantial portions of the Software. | ||
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
SOFTWARE. |
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bullseye/model-augmented-mutual-information-master/README.md
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# model-augmented-mutual-information | ||
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This repository contains code related to the paper "Model-Augmented Conditional Mutual Information Estimation for Feature Selection," which appeared at the 2020 Conference on Uncertainty in Artificial Intelligence (UAI) [[Link]](https://arxiv.org/abs/1911.04628). | ||
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The code in this repository depends on [```pycit```](https://github.com/syanga/pycit), which can be installed using pip: | ||
``` | ||
pip install pycit | ||
``` | ||
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# Experiments | ||
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## 1. Improving the Performance of k-NN Mutual Information Estimator | ||
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This experiment shows how a learned mapping can improve the performance of the k-NN mutual information (MI) estimator. We have a random variable X which is sampled uniformly on two concentric rings; a scatterplot of 500 samples is shown below: | ||
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<img src="assets/bullseye.png" width="200"> | ||
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Let Y be the magnitude of X plus noise. The goal is to estimate I(X;Y), the MI between X and Y. The samples of X are spread across two rings instead of just along a single axis, which makes k-NN MI estimation more difficult. Therefore, before using the k-NN estimator, we would like to learn a mapping of X that looks more like: | ||
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<img src="assets/mapping_regularized.png" width="200"> | ||
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as opposed to: | ||
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<img src="assets/mapping_nominal.png" width="200"> | ||
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We learn this mapping with a regularization term that maps values of X with similar information about Y (in this case, similar magnitudes) close together. This is done in the IPython notebook [```bullseye2d_experiment.ipynb```](bullseye2d_experiment.ipynb). | ||
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## 2. Conditional Independence Testing | ||
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In this experiment, we evaluate the performance of the k-NN based conditional independence test (CIT) on a 3D version of the Bullseye data, where the variables' distribution is faithful to the DAG structure: | ||
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<img src="assets/dag7.png" width="200"> | ||
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Here, the features are 3-dimensional, and the target variable Y is a scalar. The Markov blanket of Y is highlighted in blue. We find that the k-NN test is not able to correctly find the Markov blanket (parents, children, and co-parents of Y) using a PC-type algorithm (see [```pycit```](https://github.com/syanga/pycit) documentation, and Algorithm 2 in our [paper](https://arxiv.org/abs/1911.04628)). However, using samples of a learned feature mapping allowed the k-NN method to succeed. The code for this experiment is in the IPython notebook [```bullseye3d_experiment.ipynb```](bullseye3d_experiment.ipynb). | ||
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bullseye/model-augmented-mutual-information-master/bullseye/__init__.py
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""" Generate bullseye data """ | ||
from .bullseye import * | ||
from .bullseye_network import * |
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