diff --git a/test_data/example_1_output/.DS_Store b/test_data/example_1_output/.DS_Store deleted file mode 100644 index 5008ddf..0000000 Binary files a/test_data/example_1_output/.DS_Store and /dev/null differ diff --git a/test_data/example_1_output/LAVA_plots.html b/test_data/example_1_output/LAVA_plots.html deleted file mode 100644 index cf60ff0..0000000 --- a/test_data/example_1_output/LAVA_plots.html +++ /dev/null @@ -1,86 +0,0 @@ - - - - - - - - - - - fml - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - \ No newline at end of file diff --git a/test_data/example_1_output/final.csv b/test_data/example_1_output/final.csv deleted file mode 100644 index 46b36d0..0000000 --- a/test_data/example_1_output/final.csv +++ /dev/null @@ -1,2075 +0,0 @@ -Sample,Amino Acid Change,Position,AF,Change,Protein,NucleotideChange,LetterChange,Syn,Depth,Passage -1.fastq,gag_protein S6S,227,99.94,S6S,gag_protein,A18G,A to G,synonymous SNV,7931,0 -1.fastq,gag_protein R9S,236,99.98,R9S,gag_protein,G27C,G to C,nonsynonymous SNV,7599,0 -1.fastq,gag_protein G10G,239,3.89,G10G,gag_protein,G30A,G to A,synonymous SNV,7590,0 -1.fastq,gag_protein E11G,241,99.99,E11G,gag_protein,A32G,A to G,nonsynonymous SNV,7619,0 -1.fastq,gag_protein Q12E,243,100,Q12E,gag_protein,C34G,C to G,nonsynonymous SNV,7636,0 -1.fastq,gag_protein E14D,251,99.99,E14D,gag_protein,A42T,A to T,nonsynonymous SNV,7960,0 -1.fastq,gag_protein R20R,267,99.97,R20R,gag_protein,A58C,A to C,synonymous SNV,7941,0 -1.fastq,gag_protein R22R,273,99.99,R22R,gag_protein,C64A,C to A,complex,7439,0 -1.fastq,gag_protein R22R,275,99.41,R22R,gag_protein,G66A,G to A,complex,7433,0 -1.fastq,gag_protein Q28K,291,99.99,Q28K,gag_protein,C82A,C to A,nonsynonymous SNV,7578,0 -1.fastq,gag_protein R30K,298,99.94,R30K,gag_protein,G89A,G to A,complex,5140,0 -1.fastq,gag_protein R30R,299,99.98,R30R,gag_protein,G90A,G to A,complex,5134,0 -1.fastq,gag_protein L31L,300,99.96,L31L,gag_protein,C91T,C to T,synonymous SNV,5189,0 -1.fastq,gag_protein H33H,308,100,H33H,gag_protein,C99T,C to T,synonymous SNV,5459,0 -1.fastq,gag_protein L34I,309,99.96,L34I,gag_protein,C100A,C to A,nonsynonymous SNV,5466,0 -1.fastq,gag_protein L41L,330,99.88,L41L,gag_protein,C121T,C to T,complex,6499,0 -1.fastq,gag_protein L41L,332,99.46,L41L,gag_protein,G123A,G to A,complex,6515,0 -1.fastq,gag_protein R43R,336,79.84,R43R,gag_protein,A127C,A to C,synonymous SNV,6939,0 -1.fastq,gag_protein F44Y,340,99.93,F44Y,gag_protein,T131A,T to A,complex,6949,0 -1.fastq,gag_protein F44F,341,99.93,F44F,gag_protein,T132C,T to C,complex,7022,0 -1.fastq,gag_protein L46V,345,99.94,L46V,gag_protein,C136G,C to G,nonsynonymous SNV,7322,0 -1.fastq,gag_protein G49G,356,97.28,G49G,gag_protein,C147T,C to T,synonymous SNV,7594,0 -1.fastq,gag_protein L50L,359,99.94,L50L,gag_protein,T150G,T to G,synonymous SNV,7791,0 -1.fastq,gag_protein K58R,382,99.92,K58R,gag_protein,A173G,A to G,nonsynonymous SNV,7838,0 -1.fastq,gag_protein L61L,390,99.97,L61L,gag_protein,C181T,C to T,synonymous SNV,7092,0 -1.fastq,gag_protein D62G,394,99.89,D62G,gag_protein,A185G,A to G,complex,7092,0 -1.fastq,gag_protein D62E,395,100,D62E,gag_protein,C186A,C to A,complex,7107,0 -1.fastq,gag_protein I64L,399,100,I64L,gag_protein,A190C,A to C,nonsynonymous SNV,7136,0 -1.fastq,gag_protein A67A,410,99.89,A67A,gag_protein,T201C,T to C,synonymous SNV,7000,0 -1.fastq,gag_protein I68L,411,99.89,I68L,gag_protein,A202C,A to C,nonsynonymous SNV,7025,0 -1.fastq,gag_protein Q69P,415,97.84,Q69P,gag_protein,A206C,A to C,nonsynonymous SNV,7031,0 -1.fastq,gag_protein T72S,423,99.87,T72S,gag_protein,A214T,A to T,nonsynonymous SNV,6938,0 -1.fastq,gag_protein L75F,432,99.87,L75F,gag_protein,C223T,C to T,nonsynonymous SNV,6410,0 -1.fastq,gag_protein F79Y,445,100,F79Y,gag_protein,T236A,T to A,nonsynonymous SNV,4463,0 -1.fastq,gag_protein T81A,450,99.83,T81A,gag_protein,A241G,A to G,nonsynonymous SNV,4266,0 -1.fastq,gag_protein T84A,459,98.13,T84A,gag_protein,A250G,A to G,complex,384,0 -1.fastq,gag_protein T84I,460,96.8,T84I,gag_protein,C251T,C to T,complex,378,0 -1.fastq,gag_protein T84T,461,98.38,T84T,gag_protein,T252C,T to C,complex,374,0 -1.fastq,gag_protein Y86Y,467,1.66,Y86Y,gag_protein,T258C,T to C,synonymous SNV,363,0 -1.fastq,gag_protein V88V,473,95.67,V88V,gag_protein,A264G,A to G,synonymous SNV,236,0 -1.fastq,gag_protein E90Q,477,95.36,E90Q,gag_protein,G268C,G to C,nonsynonymous SNV,160,0 -1.fastq,gag_protein K91R,481,99.29,K91R,gag_protein,A272G,A to G,complex,142,0 -1.fastq,gag_protein K91K,482,95.04,K91K,gag_protein,G273A,G to A,complex,142,0 -1.fastq,gag_protein E93D,488,93.64,E93D,gag_protein,G279T,G to T,nonsynonymous SNV,116,0 -1.fastq,gag_protein V94I,489,4.5,V94I,gag_protein,G280A,G to A,nonsynonymous SNV,116,0 -1.fastq,gag_protein R95R,492,93.15,R95R,gag_protein,C283A,C to A,complex,80,0 -1.fastq,gag_protein R95Q,493,92.86,R95Q,gag_protein,G284A,G to A,complex,80,0 -1.fastq,gag_protein K98K,503,27.78,K98K,gag_protein,G294A,G to A,synonymous SNV,18,0 -1.fastq,gag_protein D102E,515,25,D102E,gag_protein,C306G,C to G,nonsynonymous SNV,4,0 -1.fastq,gag_protein K103K,518,25,K103K,gag_protein,G309A,G to A,synonymous SNV,4,0 -1.fastq,gag_protein E119K,564,100,E119K,gag_protein,G355A,G to A,nonsynonymous SNV,2,0 -1.fastq,gag_protein M120V,567,100,M120V,gag_protein,A358G,A to G,complex,2,0 -1.fastq,gag_protein M120T,568,100,M120T,gag_protein,T359C,T to C,complex,2,0 -1.fastq,gag_protein Y130Y,599,100,Y130Y,gag_protein,T390C,T to C,synonymous SNV,85,0 -1.fastq,gag_protein P131P,602,96.51,P131P,gag_protein,T393C,T to C,synonymous SNV,86,0 -1.fastq,gag_protein V133V,608,98.89,V133V,gag_protein,A399G,A to G,synonymous SNV,90,0 -1.fastq,gag_protein Q134Q,611,96.67,Q134Q,gag_protein,G402A,G to A,synonymous SNV,90,0 -1.fastq,gag_protein N135N,614,98.88,N135N,gag_protein,T405C,T to C,synonymous SNV,89,0 -1.fastq,gag_protein L136V,615,100,L136V,gag_protein,C406G,C to G,complex,89,0 -1.fastq,gag_protein L136P,616,97.75,L136P,gag_protein,T407C,T to C,complex,89,0 -1.fastq,gag_protein V141I,630,99.3,V141I,gag_protein,G421A,G to A,complex,1157,0 -1.fastq,gag_protein V141V,632,99.66,V141V,gag_protein,A423G,A to G,complex,1170,0 -1.fastq,gag_protein H142H,635,99.83,H142H,gag_protein,C426T,C to T,synonymous SNV,1246,0 -1.fastq,gag_protein P144A,639,100,P144A,gag_protein,C430G,C to G,complex,1503,0 -1.fastq,gag_protein P144P,641,99.45,P144P,gag_protein,C432T,C to T,complex,1508,0 -1.fastq,gag_protein L145M,642,100,L145M,gag_protein,C433A,C to A,complex,1507,0 -1.fastq,gag_protein L145L,644,99.73,L145L,gag_protein,G435A,G to A,complex,1628,0 -1.fastq,gag_protein P147P,650,100,P147P,gag_protein,A441T,A to T,synonymous SNV,7974,0 -1.fastq,gag_protein L150L,659,99.99,L150L,gag_protein,G450A,G to A,synonymous SNV,7993,0 -1.fastq,gag_protein I157V,678,99.9,I157V,gag_protein,A469G,A to G,nonsynonymous SNV,8018,0 -1.fastq,gag_protein E158E,683,99.95,E158E,gag_protein,G474A,G to A,synonymous SNV,8010,0 -1.fastq,gag_protein K160K,689,99.94,K160K,gag_protein,A480G,A to G,synonymous SNV,7998,0 -1.fastq,gag_protein G161A,691,100,G161A,gag_protein,G482C,G to C,nonsynonymous SNV,8000,0 -1.fastq,gag_protein N163S,697,99.91,N163S,gag_protein,A488G,A to G,nonsynonymous SNV,8017,0 -1.fastq,gag_protein E165E,704,99.98,E165E,gag_protein,G495A,G to A,synonymous SNV,8018,0 -1.fastq,gag_protein T171S,720,99.96,T171S,gag_protein,A511T,A to T,nonsynonymous SNV,8040,0 -1.fastq,gag_protein P179P,746,99.87,P179P,gag_protein,A537G,A to G,synonymous SNV,7043,0 -1.fastq,gag_protein L186L,765,99.92,L186L,gag_protein,T556C,T to C,synonymous SNV,6441,0 -1.fastq,gag_protein N187N,770,99.92,N187N,gag_protein,T561C,T to C,synonymous SNV,6532,0 -1.fastq,gag_protein H192H,785,99.94,H192H,gag_protein,T576C,T to C,synonymous SNV,6747,0 -1.fastq,gag_protein A195A,794,99.9,A195A,gag_protein,C585T,C to T,synonymous SNV,7195,0 -1.fastq,gag_protein D201E,812,99.96,D201E,gag_protein,T603G,T to G,nonsynonymous SNV,7946,0 -1.fastq,gag_protein I203I,818,18.41,I203I,gag_protein,C609T,C to T,synonymous SNV,7980,0 -1.fastq,gag_protein E206E,827,99.86,E206E,gag_protein,G618A,G to A,synonymous SNV,7967,0 -1.fastq,gag_protein V216V,857,81.47,V216V,gag_protein,A648G,A to G,synonymous SNV,7968,0 -1.fastq,gag_protein I221V,870,99.99,I221V,gag_protein,A661G,A to G,nonsynonymous SNV,7970,0 -1.fastq,gag_protein Q225Q,884,85.36,Q225Q,gag_protein,A675G,A to G,synonymous SNV,7970,0 -1.fastq,gag_protein D233D,908,2.41,D233D,gag_protein,C699T,C to T,synonymous SNV,7862,0 -1.fastq,gag_protein N240T,928,99.93,N240T,gag_protein,A719C,A to C,nonsynonymous SNV,4374,0 -1.fastq,gag_protein V245I,942,99.84,V245I,gag_protein,G733A,G to A,nonsynonymous SNV,2509,0 -1.fastq,gag_protein A246G,946,100,A246G,gag_protein,C737G,C to G,nonsynonymous SNV,2841,0 -1.fastq,gag_protein G250S,957,100,G250S,gag_protein,G748A,G to A,complex,3494,0 -1.fastq,gag_protein G250D,958,100,G250D,gag_protein,G749A,G to A,complex,3490,0 -1.fastq,gag_protein G250G,959,100,G250G,gag_protein,C750T,C to T,complex,3608,0 -1.fastq,gag_protein N251N,962,99.89,N251N,gag_protein,C753T,C to T,synonymous SNV,3633,0 -1.fastq,gag_protein A253P,966,100,A253P,gag_protein,G757C,G to C,nonsynonymous SNV,4223,0 -1.fastq,gag_protein I254I,971,12.17,I254I,gag_protein,C762T,C to T,synonymous SNV,7540,0 -1.fastq,gag_protein V256V,977,99.95,V256V,gag_protein,G768A,G to A,synonymous SNV,7970,0 -1.fastq,gag_protein D258E,983,99.99,D258E,gag_protein,C774A,C to A,nonsynonymous SNV,7984,0 -1.fastq,gag_protein Y260Y,989,99.95,Y260Y,gag_protein,T780C,T to C,synonymous SNV,7982,0 -1.fastq,gag_protein I265I,1004,99.99,I265I,gag_protein,T795C,T to C,synonymous SNV,7976,0 -1.fastq,gag_protein L266M,1005,99.99,L266M,gag_protein,T796A,T to A,nonsynonymous SNV,7980,0 -1.fastq,gag_protein G267G,1010,99.92,G267G,gag_protein,G801A,G to A,synonymous SNV,7956,0 -1.fastq,gag_protein L268L,1011,99.99,L268L,gag_protein,C802T,C to T,synonymous SNV,7971,0 -1.fastq,gag_protein R273R,1028,99.97,R273R,gag_protein,A819G,A to G,synonymous SNV,7961,0 -1.fastq,gag_protein S276N,1036,1.17,S276N,gag_protein,G827A,G to A,complex,7964,0 -1.fastq,gag_protein S276S,1037,99.88,S276S,gag_protein,C828T,C to T,complex,7018,0 -1.fastq,gag_protein V278I,1041,99.47,V278I,gag_protein,G832A,G to A,complex,7220,0 -1.fastq,gag_protein V278A,1042,99.93,V278A,gag_protein,T833C,T to C,complex,7115,0 -1.fastq,gag_protein V278V,1043,99.96,V278V,gag_protein,T834C,T to C,complex,7159,0 -1.fastq,gag_protein L281L,1050,99.93,L281L,gag_protein,T841C,T to C,synonymous SNV,7277,0 -1.fastq,gag_protein I283I,1058,99.96,I283I,gag_protein,A849T,A to T,synonymous SNV,7656,0 -1.fastq,gag_protein G286G,1067,99.67,G286G,gag_protein,G858A,G to A,synonymous SNV,7916,0 -1.fastq,gag_protein P290P,1079,3.51,P290P,gag_protein,C870T,C to T,synonymous SNV,7969,0 -1.fastq,gag_protein D293D,1088,3.24,D293D,gag_protein,C879T,C to T,synonymous SNV,7782,0 -1.fastq,gag_protein D296D,1097,99.92,D296D,gag_protein,T888C,T to C,synonymous SNV,6638,0 -1.fastq,gag_protein F299Y,1105,99.94,F299Y,gag_protein,T896A,T to A,nonsynonymous SNV,7015,0 -1.fastq,gag_protein L302L,1113,100,L302L,gag_protein,T904C,T to C,synonymous SNV,6940,0 -1.fastq,gag_protein A304A,1121,99.95,A304A,gag_protein,T912C,T to C,synonymous SNV,7315,0 -1.fastq,gag_protein E305E,1124,99.95,E305E,gag_protein,A915G,A to G,synonymous SNV,7510,0 -1.fastq,gag_protein T308S,1131,99.99,T308S,gag_protein,A922T,A to T,nonsynonymous SNV,7974,0 -1.fastq,gag_protein Q309Q,1136,99.97,Q309Q,gag_protein,A927G,A to G,synonymous SNV,7992,0 -1.fastq,gag_protein D317E,1160,100,D317E,gag_protein,C951A,C to A,nonsynonymous SNV,7987,0 -1.fastq,gag_protein L320L,1169,99.96,L320L,gag_protein,A960G,A to G,synonymous SNV,7950,0 -1.fastq,gag_protein A324A,1181,99.95,A324A,gag_protein,G972A,G to A,synonymous SNV,7935,0 -1.fastq,gag_protein K329K,1196,99.94,K329K,gag_protein,G987A,G to A,synonymous SNV,7276,0 -1.fastq,gag_protein T330T,1199,99.97,T330T,gag_protein,C990T,C to T,synonymous SNV,7462,0 -1.fastq,gag_protein R333K,1207,99.92,R333K,gag_protein,G998A,G to A,complex,7528,0 -1.fastq,gag_protein R333R,1208,81.12,R333R,gag_protein,A999G,A to G,complex,7572,0 -1.fastq,gag_protein L335L,1214,92.8,L335L,gag_protein,A1005G,A to G,synonymous SNV,7956,0 -1.fastq,gag_protein G338G,1223,99.7,G338G,gag_protein,G1014A,G to A,synonymous SNV,6957,0 -1.fastq,gag_protein S340T,1227,100,S340T,gag_protein,T1018A,T to A,complex,7036,0 -1.fastq,gag_protein S340S,1229,99.96,S340S,gag_protein,A1020C,A to C,complex,7072,0 -1.fastq,gag_protein L341L,1230,99.91,L341L,gag_protein,T1021C,T to C,synonymous SNV,7066,0 -1.fastq,gag_protein E342E,1235,99.97,E342E,gag_protein,G1026A,G to A,synonymous SNV,7867,0 -1.fastq,gag_protein E343D,1238,1.29,E343D,gag_protein,A1029C,A to C,nonsynonymous SNV,7862,0 -1.fastq,gag_protein G353G,1268,99.77,G353G,gag_protein,A1059G,A to G,synonymous SNV,3984,0 -1.fastq,gag_protein P354P,1271,99.82,P354P,gag_protein,T1062C,T to C,synonymous SNV,3983,0 -1.fastq,gag_protein H356H,1277,99.9,H356H,gag_protein,C1068T,C to T,synonymous SNV,4004,0 -1.fastq,gag_protein R359R,1286,99.93,R359R,gag_protein,G1077A,G to A,synonymous SNV,4008,0 -1.fastq,gag_protein V360V,1289,100,V360V,gag_protein,A1080C,A to C,synonymous SNV,3990,0 -1.fastq,gag_protein A364A,1301,100,A364A,gag_protein,C1092A,C to A,synonymous SNV,3968,0 -1.fastq,gag_protein S366S,1307,95.59,S366S,gag_protein,T1098C,T to C,synonymous SNV,137,0 -1.fastq,gag_protein A368V,1312,92.39,A368V,gag_protein,C1103T,C to T,nonsynonymous SNV,97,0 -1.fastq,gag_protein N369T,1315,92.63,N369T,gag_protein,A1106C,A to C,complex,103,0 -1.fastq,gag_protein N369K,1316,85.44,N369K,gag_protein,C1107A,C to A,complex,108,0 -1.fastq,gag_protein S370N,1318,2.06,S370N,gag_protein,G1109A,G to A,nonsynonymous SNV,102,0 -1.fastq,gag_protein A371S,1320,25,A371S,gag_protein,G1111T,G to T,nonsynonymous SNV,4,0 -1.fastq,gag_protein N372N,1325,100,N372N,gag_protein,C1116T,C to T,synonymous SNV,4,0 -1.fastq,gag_protein V373I,1326,2.29,V373I,gag_protein,G1117A,G to A,nonsynonymous SNV,140,0 -1.fastq,gag_protein L374M,1329,97.89,L374M,gag_protein,C1120A,C to A,nonsynonymous SNV,142,0 -1.fastq,gag_protein S378G,1341,98.73,S378G,gag_protein,A1132G,A to G,nonsynonymous SNV,239,0 -1.fastq,gag_protein F380F,1349,83.33,F380F,gag_protein,C1140T,C to T,synonymous SNV,6,0 -1.fastq,gag_protein K381K,1352,14.29,K381K,gag_protein,A1143G,A to G,synonymous SNV,18,0 -1.fastq,gag_protein P383S,1356,71.43,P383S,gag_protein,C1147T,C to T,complex,7,0 -1.fastq,gag_protein P383P,1358,16.67,P383P,gag_protein,T1149A,T to A,complex,7,0 -1.fastq,gag_protein A386G,1366,100,A386G,gag_protein,C1157G,C to G,nonsynonymous SNV,1243,0 -1.fastq,gag_protein V387V,1370,100,V387V,gag_protein,G1161T,G to T,synonymous SNV,1277,0 -1.fastq,gag_protein K388K,1373,99.62,K388K,gag_protein,A1164G,A to G,synonymous SNV,1611,0 -1.fastq,gag_protein N391N,1382,94.65,N391N,gag_protein,C1173T,C to T,synonymous SNV,7969,0 -1.fastq,gag_protein K394K,1391,99.9,K394K,gag_protein,G1182A,G to A,synonymous SNV,7984,0 -1.fastq,gag_protein A399A,1406,99.99,A399A,gag_protein,T1197C,T to C,synonymous SNV,8003,0 -1.fastq,gag_protein C402C,1415,93.83,C402C,gag_protein,T1206C,T to C,synonymous SNV,8006,0 -1.fastq,gag_protein K403R,1417,43.98,K403R,gag_protein,A1208G,A to G,nonsynonymous SNV,8020,0 -1.fastq,gag_protein R406R,1427,7.48,R406R,gag_protein,G1218A,G to A,synonymous SNV,7994,0 -1.fastq,gag_protein K408K,1433,94.71,K408K,gag_protein,A1224G,A to G,synonymous SNV,7980,0 -1.fastq,gag_protein G414G,1451,99.92,G414G,gag_protein,A1242C,A to C,synonymous SNV,7916,0 -1.fastq,gag_protein E425E,1484,99.97,E425E,gag_protein,A1275G,A to G,synonymous SNV,6803,0 -1.fastq,gag_protein R426R,1487,99.76,R426R,gag_protein,G1278A,G to A,synonymous SNV,6581,0 -1.fastq,gag_protein K433R,1507,1.9,K433R,gag_protein,A1298G,A to G,nonsynonymous SNV,5913,0 -1.fastq,pol_protein N5D,1508,97.51,N5D,pol_protein,A13G,A to G,nonsynonymous SNV,4516,0 -1.fastq,pol_protein G11R,1526,2.07,G11R,pol_protein,G31A,G to A,nonsynonymous SNV,2515,0 -1.fastq,pol_protein E12K,1529,99.76,E12K,pol_protein,G34A,G to A,nonsynonymous SNV,2497,0 -1.fastq,pol_protein P17S,1544,99.96,P17S,pol_protein,C49T,C to T,nonsynonymous SNV,2491,0 -1.fastq,gag_protein S448N,1552,80.34,S448N,gag_protein,G1343A,G to A,nonsynonymous SNV,2480,0 -1.fastq,pol_protein A21T,1556,99.84,A21T,pol_protein,G61A,G to A,nonsynonymous SNV,2470,0 -1.fastq,pol_protein T23A,1562,100,T23A,pol_protein,A67G,A to G,nonsynonymous SNV,2470,0 -1.fastq,pol_protein T26P,1571,100,T26P,pol_protein,A76C,A to C,nonsynonymous SNV,2390,0 -1.fastq,pol_protein C39R,1610,100,C39R,pol_protein,T115C,T to C,nonsynonymous SNV,2,0 -1.fastq,pol_protein S40A,1613,100,S40A,pol_protein,T118G,T to G,nonsynonymous SNV,3,0 -1.fastq,gag_protein Q473L,1627,100,Q473L,gag_protein,A1418T,A to T,nonsynonymous SNV,4,0 -1.fastq,pol_protein R46G,1631,66.67,R46G,pol_protein,A136G,A to G,nonsynonymous SNV,6,0 -1.fastq,gag_protein R476K,1636,76.19,R476K,gag_protein,G1427A,G to A,nonsynonymous SNV,26,0 -1.fastq,pol_protein A49T,1640,100,A49T,pol_protein,G145A,G to A,nonsynonymous SNV,13,0 -1.fastq,pol_protein L50F,1643,82.61,L50F,pol_protein,C148T,C to T,nonsynonymous SNV,67,0 -1.fastq,gag_protein K483R,1657,67.51,K483R,gag_protein,A1448G,A to G,nonsynonymous SNV,7472,0 -1.fastq,gag_protein L491S,1681,99.9,L491S,gag_protein,T1472C,T to C,nonsynonymous SNV,7816,0 -1.fastq,pol_protein I65V,1688,99.87,I65V,pol_protein,A193G,A to G,nonsynonymous SNV,7840,0 -1.fastq,pol_protein V67I,1694,99.95,V67I,pol_protein,G199A,G to A,nonsynonymous SNV,7665,0 -1.fastq,pol_protein G69G,1702,100,G69G,pol_protein,C207G,C to G,synonymous SNV,7080,0 -1.fastq,pol_protein I71L,1706,99.91,I71L,pol_protein,A211C,A to C,nonsynonymous SNV,6972,0 -1.fastq,pol_protein A74A,1717,13.95,A74A,pol_protein,T222C,T to C,synonymous SNV,7035,0 -1.fastq,pol_protein L75L,1720,99.91,L75L,pol_protein,C225A,C to A,synonymous SNV,6545,0 -1.fastq,pol_protein L76L,1721,99.95,L76L,pol_protein,C226T,C to T,synonymous SNV,6567,0 -1.fastq,pol_protein G79G,1732,2.07,G79G,pol_protein,A237G,A to G,synonymous SNV,7086,0 -1.fastq,pol_protein L85I,1748,99.88,L85I,pol_protein,T253A,T to A,nonsynonymous SNV,6559,0 -1.fastq,pol_protein I88M,1759,99.97,I88M,pol_protein,A264G,A to G,nonsynonymous SNV,6484,0 -1.fastq,pol_protein N89S,1761,5.71,N89S,pol_protein,A266G,A to G,nonsynonymous SNV,6775,0 -1.fastq,pol_protein P91S,1766,99.67,P91S,pol_protein,C271T,C to T,nonsynonymous SNV,6432,0 -1.fastq,pol_protein K93R,1773,99.92,K93R,pol_protein,A278G,A to G,nonsynonymous SNV,6360,0 -1.fastq,pol_protein G100G,1795,94.99,G100G,pol_protein,A300G,A to G,synonymous SNV,6276,0 -1.fastq,pol_protein Q110Q,1825,100,Q110Q,pol_protein,A330G,A to G,synonymous SNV,6468,0 -1.fastq,pol_protein E112D,1831,99.39,E112D,pol_protein,G336T,G to T,nonsynonymous SNV,4252,0 -1.fastq,pol_protein D113H,1832,99.83,D113H,pol_protein,G337C,G to C,complex,4249,0 -1.fastq,pol_protein D113E,1834,99.56,D113E,pol_protein,C339A,C to A,complex,4248,0 -1.fastq,pol_protein I114V,1835,99.88,I114V,pol_protein,A340G,A to G,nonsynonymous SNV,4242,0 -1.fastq,pol_protein T115P,1838,99.24,T115P,pol_protein,A343C,A to C,complex,4244,0 -1.fastq,pol_protein T115T,1840,98.14,T115T,pol_protein,T345C,T to C,complex,4306,0 -1.fastq,pol_protein I116V,1841,99.88,I116V,pol_protein,A346G,A to G,nonsynonymous SNV,4342,0 -1.fastq,pol_protein I118I,1849,99.93,I118I,pol_protein,T354C,T to C,synonymous SNV,4616,0 -1.fastq,pol_protein K121Q,1856,99.96,K121Q,pol_protein,A361C,A to C,complex,4728,0 -1.fastq,pol_protein K121N,1858,99.96,K121N,pol_protein,A363T,A to T,complex,4728,0 -1.fastq,pol_protein K122K,1861,99.77,K122K,pol_protein,G366A,G to A,synonymous SNV,4724,0 -1.fastq,pol_protein A126T,1871,100,A126T,pol_protein,G376A,G to A,nonsynonymous SNV,6990,0 -1.fastq,pol_protein V129V,1882,99.93,V129V,pol_protein,G387A,G to A,synonymous SNV,7368,0 -1.fastq,pol_protein M141L,1916,100,M141L,pol_protein,A421C,A to C,nonsynonymous SNV,7455,0 -1.fastq,pol_protein T143T,1924,99.99,T143T,pol_protein,A429T,A to T,synonymous SNV,6871,0 -1.fastq,pol_protein L145I,1928,99.99,L145I,pol_protein,C433A,C to A,nonsynonymous SNV,6929,0 -1.fastq,pol_protein G146G,1933,99.95,G146G,pol_protein,A438G,A to G,synonymous SNV,6665,0 -1.fastq,pol_protein T148T,1939,100,T148T,pol_protein,A444T,A to T,synonymous SNV,6615,0 -1.fastq,pol_protein L149L,1940,73.77,L149L,pol_protein,C445T,C to T,synonymous SNV,6667,0 -1.fastq,pol_protein P152P,1951,100,P152P,pol_protein,A456T,A to T,synonymous SNV,7213,0 -1.fastq,pol_protein P155P,1960,100,P155P,pol_protein,C465T,C to T,synonymous SNV,7123,0 -1.fastq,pol_protein L163L,1982,29.08,L163L,pol_protein,T487C,T to C,synonymous SNV,7598,0 -1.fastq,pol_protein K171K,2008,99.97,K171K,pol_protein,G513A,G to A,synonymous SNV,7452,0 -1.fastq,pol_protein E180E,2035,21.84,E180E,pol_protein,A540G,A to G,synonymous SNV,7737,0 -1.fastq,pol_protein L185L,2048,18.55,L185L,pol_protein,T553C,T to C,synonymous SNV,7321,0 -1.fastq,pol_protein T186A,2051,99.87,T186A,pol_protein,A556G,A to G,complex,6092,0 -1.fastq,pol_protein T186I,2052,99.97,T186I,pol_protein,C557T,C to T,complex,6090,0 -1.fastq,pol_protein A187E,2055,99.95,A187E,pol_protein,C560A,C to A,nonsynonymous SNV,6122,0 -1.fastq,pol_protein E190K,2063,99.87,E190K,pol_protein,G568A,G to A,complex,6078,0 -1.fastq,pol_protein E190A,2064,99.95,E190A,pol_protein,A569C,A to C,complex,6103,0 -1.fastq,pol_protein E193E,2074,99.87,E193E,pol_protein,A579G,A to G,synonymous SNV,6994,0 -1.fastq,pol_protein E195E,2080,99.5,E195E,pol_protein,A585G,A to G,synonymous SNV,6706,0 -1.fastq,pol_protein G196G,2083,99.66,G196G,pol_protein,A588G,A to G,synonymous SNV,6613,0 -1.fastq,pol_protein T199S,2090,99.93,T199S,pol_protein,A595T,A to T,nonsynonymous SNV,7153,0 -1.fastq,pol_protein K200R,2094,99.88,K200R,pol_protein,A599G,A to G,nonsynonymous SNV,7294,0 -1.fastq,pol_protein Y207Y,2116,100,Y207Y,pol_protein,T621C,T to C,synonymous SNV,7115,0 -1.fastq,pol_protein N208N,2119,99.9,N208N,pol_protein,C624T,C to T,synonymous SNV,7109,0 -1.fastq,pol_protein A213A,2134,68.89,A213A,pol_protein,C639T,C to T,synonymous SNV,7540,0 -1.fastq,pol_protein K215K,2140,99.85,K215K,pol_protein,A645G,A to G,synonymous SNV,6771,0 -1.fastq,pol_protein K216K,2143,99.81,K216K,pol_protein,G648A,G to A,synonymous SNV,6718,0 -1.fastq,pol_protein K217K,2146,99.85,K217K,pol_protein,G651A,G to A,synonymous SNV,6772,0 -1.fastq,pol_protein K221K,2158,99.93,K221K,pol_protein,G663A,G to A,synonymous SNV,7520,0 -1.fastq,pol_protein R229R,2182,99.9,R229R,pol_protein,G687A,G to A,synonymous SNV,6715,0 -1.fastq,pol_protein K233K,2194,99.92,K233K,pol_protein,A699G,A to G,synonymous SNV,6271,0 -1.fastq,pol_protein F238F,2209,99.87,F238F,pol_protein,T714C,T to C,synonymous SNV,6288,0 -1.fastq,pol_protein V241V,2218,69.3,V241V,pol_protein,T723C,T to C,synonymous SNV,6388,0 -1.fastq,pol_protein G244G,2227,99.86,G244G,pol_protein,A732G,A to G,synonymous SNV,6240,0 -1.fastq,pol_protein H247H,2236,99.46,H247H,pol_protein,C741T,C to T,synonymous SNV,5789,0 -1.fastq,pol_protein P248P,2239,99.9,P248P,pol_protein,A744C,A to C,synonymous SNV,5771,0 -1.fastq,pol_protein G250G,2245,99.9,G250G,pol_protein,G750A,G to A,synonymous SNV,6038,0 -1.fastq,pol_protein K255R,2259,42.66,K255R,pol_protein,A764G,A to G,nonsynonymous SNV,6141,0 -1.fastq,pol_protein V257M,2264,99.88,V257M,pol_protein,G769A,G to A,complex,5819,0 -1.fastq,pol_protein V257V,2266,99.98,V257V,pol_protein,G771A,G to A,complex,5839,0 -1.fastq,pol_protein G263G,2284,99.97,G263G,pol_protein,G789T,G to T,synonymous SNV,6120,0 -1.fastq,pol_protein V269V,2302,100,V269V,pol_protein,G807T,G to T,synonymous SNV,5902,0 -1.fastq,pol_protein P270P,2305,74.87,P270P,pol_protein,T810C,T to C,synonymous SNV,5873,0 -1.fastq,pol_protein E273K,2312,99.23,E273K,pol_protein,G817A,G to A,complex,6034,0 -1.fastq,pol_protein E273G,2313,23.12,E273G,pol_protein,A818G,A to G,complex,6038,0 -1.fastq,pol_protein G274D,2316,99.97,G274D,pol_protein,G821A,G to A,complex,6076,0 -1.fastq,pol_protein G274G,2317,99.93,G274G,pol_protein,C822A,C to A,complex,6078,0 -1.fastq,pol_protein F281F,2338,99.95,F281F,pol_protein,C843T,C to T,synonymous SNV,7474,0 -1.fastq,pol_protein E289E,2362,99.97,E289E,pol_protein,A867G,A to G,synonymous SNV,7633,0 -1.fastq,pol_protein Q296Q,2383,100,Q296Q,pol_protein,A888G,A to G,synonymous SNV,7409,0 -1.fastq,pol_protein Y297Y,2386,99.99,Y297Y,pol_protein,T891C,T to C,synonymous SNV,7424,0 -1.fastq,pol_protein L300L,2395,99.99,L300L,pol_protein,G900T,G to T,synonymous SNV,7635,0 -1.fastq,pol_protein Q312Q,2431,100,Q312Q,pol_protein,G936A,G to A,synonymous SNV,7306,0 -1.fastq,pol_protein E320D,2455,99.97,E320D,pol_protein,G960T,G to T,nonsynonymous SNV,5836,0 -1.fastq,pol_protein P321P,2458,99.98,P321P,pol_protein,A963T,A to T,synonymous SNV,5805,0 -1.fastq,pol_protein R323R,2464,99.71,R323R,pol_protein,G969A,G to A,synonymous SNV,5553,0 -1.fastq,pol_protein I324K,2466,100,I324K,pol_protein,T971A,T to A,nonsynonymous SNV,5520,0 -1.fastq,pol_protein K325Q,2468,99.98,K325Q,pol_protein,A973C,A to C,nonsynonymous SNV,5559,0 -1.fastq,pol_protein N326N,2473,100,N326N,pol_protein,C978T,C to T,synonymous SNV,5726,0 -1.fastq,pol_protein D328D,2479,99.95,D328D,pol_protein,C984T,C to T,synonymous SNV,5629,0 -1.fastq,pol_protein I329L,2480,99.95,I329L,pol_protein,A985T,A to T,nonsynonymous SNV,5608,0 -1.fastq,pol_protein V330V,2485,99.96,V330V,pol_protein,T990G,T to G,synonymous SNV,5750,0 -1.fastq,pol_protein D337D,2506,99.95,D337D,pol_protein,C1011T,C to T,synonymous SNV,6416,0 -1.fastq,pol_protein G341G,2518,99.88,G341G,pol_protein,A1023G,A to G,synonymous SNV,5945,0 -1.fastq,pol_protein D347G,2535,99.98,D347G,pol_protein,A1040G,A to G,complex,5049,0 -1.fastq,pol_protein D347E,2536,100,D347E,pol_protein,T1041G,T to G,complex,5035,0 -1.fastq,pol_protein Q348Q,2539,99.86,Q348Q,pol_protein,A1044G,A to G,synonymous SNV,5127,0 -1.fastq,pol_protein H349H,2542,26.93,H349H,pol_protein,T1047C,T to C,synonymous SNV,5298,0 -1.fastq,pol_protein E354E,2557,99.87,E354E,pol_protein,G1062A,G to A,synonymous SNV,2366,0 -1.fastq,pol_protein E355E,2560,99.87,E355E,pol_protein,G1065A,G to A,synonymous SNV,2309,0 -1.fastq,pol_protein L356L,2561,99.87,L356L,pol_protein,T1066C,T to C,complex,2317,0 -1.fastq,pol_protein L356L,2563,99.74,L356L,pol_protein,A1068G,A to G,complex,2336,0 -1.fastq,pol_protein L360L,2573,99.07,L360L,pol_protein,T1078C,T to C,complex,2256,0 -1.fastq,pol_protein L360L,2575,98.93,L360L,pol_protein,A1080G,A to G,complex,2252,0 -1.fastq,pol_protein L361L,2578,99.96,L361L,pol_protein,G1083A,G to A,synonymous SNV,2235,0 -1.fastq,pol_protein R362K,2580,100,R362K,pol_protein,G1085A,G to A,complex,2236,0 -1.fastq,pol_protein R362R,2581,100,R362R,pol_protein,A1086G,A to G,complex,2267,0 -1.fastq,pol_protein F365L,2588,99.88,F365L,pol_protein,T1093C,T to C,complex,2587,0 -1.fastq,pol_protein F365F,2590,99.85,F365F,pol_protein,C1095T,C to T,complex,2608,0 -1.fastq,pol_protein T367T,2596,99.92,T367T,pol_protein,A1101C,A to C,synonymous SNV,4812,0 -1.fastq,pol_protein K370K,2605,99.9,K370K,pol_protein,G1110A,G to A,synonymous SNV,5027,0 -1.fastq,pol_protein K371K,2608,99.88,K371K,pol_protein,A1113G,A to G,synonymous SNV,5071,0 -1.fastq,pol_protein P376P,2623,99.78,P376P,pol_protein,C1128T,C to T,synonymous SNV,5550,0 -1.fastq,pol_protein F378F,2629,99.93,F378F,pol_protein,T1134C,T to C,synonymous SNV,5677,0 -1.fastq,pol_protein G382G,2641,99.9,G382G,pol_protein,G1146T,G to T,synonymous SNV,6135,0 -1.fastq,pol_protein E384E,2647,99.97,E384E,pol_protein,G1152A,G to A,synonymous SNV,6538,0 -1.fastq,pol_protein P394P,2677,44.12,P394P,pol_protein,T1182C,T to C,synonymous SNV,7231,0 -1.fastq,pol_protein Q396K,2681,99.75,Q396K,pol_protein,C1186A,C to A,complex,6843,0 -1.fastq,pol_protein Q396L,2682,99.93,Q396L,pol_protein,A1187T,A to T,complex,6854,0 -1.fastq,pol_protein Q396Q,2683,21.84,Q396Q,pol_protein,G1188A,G to A,complex,7175,0 -1.fastq,pol_protein K400K,2695,99.89,K400K,pol_protein,G1200A,G to A,synonymous SNV,7062,0 -1.fastq,pol_protein D401D,2698,99.92,D401D,pol_protein,T1203C,T to C,synonymous SNV,7124,0 -1.fastq,pol_protein D407D,2716,99.92,D407D,pol_protein,T1221C,T to C,synonymous SNV,7204,0 -1.fastq,pol_protein L415L,2740,99.89,L415L,pol_protein,A1245G,A to G,synonymous SNV,6272,0 -1.fastq,pol_protein N416N,2743,100,N416N,pol_protein,C1248T,C to T,synonymous SNV,6296,0 -1.fastq,pol_protein Q420Q,2755,100,Q420Q,pol_protein,A1260G,A to G,synonymous SNV,6333,0 -1.fastq,pol_protein P423A,2762,99.93,P423A,pol_protein,C1267G,C to G,nonsynonymous SNV,6131,0 -1.fastq,pol_protein R426K,2772,100,R426K,pol_protein,G1277A,G to A,nonsynonymous SNV,5812,0 -1.fastq,pol_protein R428K,2778,99.75,R428K,pol_protein,G1283A,G to A,complex,4913,0 -1.fastq,pol_protein R428R,2779,99.98,R428R,pol_protein,A1284G,A to G,complex,4898,0 -1.fastq,pol_protein Q429Q,2782,100,Q429Q,pol_protein,G1287A,G to A,synonymous SNV,4932,0 -1.fastq,pol_protein L430L,2785,100,L430L,pol_protein,G1290A,G to A,synonymous SNV,5095,0 -1.fastq,pol_protein L433L,2794,28.2,L433L,pol_protein,C1299T,C to T,synonymous SNV,6312,0 -1.fastq,pol_protein R435R,2800,99.98,R435R,pol_protein,A1305G,A to G,synonymous SNV,6041,0 -1.fastq,pol_protein A437T,2804,99.93,A437T,pol_protein,G1309A,G to A,complex,6021,0 -1.fastq,pol_protein A437A,2806,22.79,A437A,pol_protein,C1311T,C to T,complex,6370,0 -1.fastq,pol_protein D442E,2821,99.98,D442E,pol_protein,C1326A,C to A,nonsynonymous SNV,5746,0 -1.fastq,pol_protein I443V,2822,99.96,I443V,pol_protein,A1327G,A to G,nonsynonymous SNV,5738,0 -1.fastq,pol_protein V444I,2825,99.2,V444I,pol_protein,G1330A,G to A,nonsynonymous SNV,5805,0 -1.fastq,pol_protein T447T,2836,99.97,T447T,pol_protein,T1341A,T to A,synonymous SNV,6414,0 -1.fastq,pol_protein A450A,2845,100,A450A,pol_protein,T1350A,T to A,synonymous SNV,6439,0 -1.fastq,pol_protein L452L,2849,99.95,L452L,pol_protein,T1354C,T to C,synonymous SNV,6465,0 -1.fastq,pol_protein L454L,2855,99.93,L454L,pol_protein,T1360C,T to C,synonymous SNV,6767,0 -1.fastq,pol_protein E456E,2863,99.96,E456E,pol_protein,G1368A,G to A,synonymous SNV,6699,0 -1.fastq,pol_protein R458R,2869,100,R458R,pol_protein,A1374G,A to G,synonymous SNV,6738,0 -1.fastq,pol_protein E459E,2872,52.5,E459E,pol_protein,A1377G,A to G,synonymous SNV,6928,0 -1.fastq,pol_protein G467G,2896,99.89,G467G,pol_protein,A1401G,A to G,synonymous SNV,7279,0 -1.fastq,pol_protein V468V,2899,99.93,V468V,pol_protein,A1404G,A to G,synonymous SNV,7372,0 -1.fastq,pol_protein L476L,2923,99.4,L476L,pol_protein,G1428A,G to A,synonymous SNV,5196,0 -1.fastq,pol_protein I477V,2924,99.88,I477V,pol_protein,A1429G,A to G,nonsynonymous SNV,5169,0 -1.fastq,pol_protein A478A,2929,99.9,A478A,pol_protein,T1434A,T to A,synonymous SNV,5214,0 -1.fastq,pol_protein I480L,2933,99.88,I480L,pol_protein,A1438T,A to T,nonsynonymous SNV,5176,0 -1.fastq,pol_protein K482K,2941,99.88,K482K,pol_protein,A1446G,A to G,synonymous SNV,5215,0 -1.fastq,pol_protein H485D,2948,99.13,H485D,pol_protein,C1453G,C to G,complex,5087,0 -1.fastq,pol_protein H485Q,2950,100,H485Q,pol_protein,T1455A,T to A,complex,5079,0 -1.fastq,pol_protein D486G,2952,99.78,D486G,pol_protein,A1457G,A to G,complex,5043,0 -1.fastq,pol_protein D486D,2953,99.78,D486D,pol_protein,T1458C,T to C,complex,5079,0 -1.fastq,pol_protein Q491Q,2968,99.84,Q491Q,pol_protein,A1473G,A to G,synonymous SNV,6400,0 -1.fastq,pol_protein I492I,2971,100,I492I,pol_protein,C1476T,C to T,synonymous SNV,6424,0 -1.fastq,pol_protein Y493Y,2974,99.87,Y493Y,pol_protein,C1479T,C to T,synonymous SNV,6465,0 -1.fastq,pol_protein E495E,2980,99.91,E495E,pol_protein,A1485G,A to G,synonymous SNV,6834,0 -1.fastq,pol_protein F497F,2986,99.91,F497F,pol_protein,C1491T,C to T,synonymous SNV,6984,0 -1.fastq,pol_protein G503G,3004,100,G503G,pol_protein,G1509A,G to A,synonymous SNV,6662,0 -1.fastq,pol_protein K504K,3007,99.9,K504K,pol_protein,G1512A,G to A,synonymous SNV,6693,0 -1.fastq,pol_protein K507R,3015,99.93,K507R,pol_protein,A1520G,A to G,nonsynonymous SNV,6020,0 -1.fastq,pol_protein M508T,3018,99.84,M508T,pol_protein,T1523C,T to C,nonsynonymous SNV,6159,0 -1.fastq,pol_protein T510A,3023,99.98,T510A,pol_protein,A1528G,A to G,complex,6081,0 -1.fastq,pol_protein T510S,3024,99.97,T510S,pol_protein,C1529G,C to G,complex,6080,0 -1.fastq,pol_protein V516V,3043,41.44,V516V,pol_protein,A1548G,A to G,synonymous SNV,7186,0 -1.fastq,pol_protein Q518Q,3049,99.96,Q518Q,pol_protein,G1554A,G to A,synonymous SNV,7003,0 -1.fastq,pol_protein A527T,3074,99.94,A527T,pol_protein,G1579A,G to A,nonsynonymous SNV,6663,0 -1.fastq,pol_protein T528P,3077,99.59,T528P,pol_protein,A1582C,A to C,complex,6625,0 -1.fastq,pol_protein T528I,3078,99.92,T528I,pol_protein,C1583T,C to T,complex,6681,0 -1.fastq,pol_protein T537I,3105,99.97,T537I,pol_protein,C1610T,C to T,nonsynonymous SNV,7303,0 -1.fastq,pol_protein R541K,3117,99.89,R541K,pol_protein,G1622A,G to A,nonsynonymous SNV,7316,0 -1.fastq,pol_protein I544I,3127,99.93,I544I,pol_protein,C1632A,C to A,synonymous SNV,7307,0 -1.fastq,pol_protein D547E,3136,100,D547E,pol_protein,C1641G,C to G,nonsynonymous SNV,7263,0 -1.fastq,pol_protein E550E,3145,99.93,E550E,pol_protein,G1650A,G to A,synonymous SNV,7351,0 -1.fastq,pol_protein D555E,3160,99.95,D555E,pol_protein,C1665A,C to A,nonsynonymous SNV,7434,0 -1.fastq,pol_protein Y561C,3177,100,Y561C,pol_protein,A1682G,A to G,nonsynonymous SNV,7124,0 -1.fastq,pol_protein V568V,3199,99.97,V568V,pol_protein,T1704C,T to C,synonymous SNV,6865,0 -1.fastq,pol_protein L573L,3212,99.92,L573L,pol_protein,C1717T,C to T,synonymous SNV,6074,0 -1.fastq,pol_protein V574V,3217,99.81,V574V,pol_protein,A1722G,A to G,synonymous SNV,5932,0 -1.fastq,pol_protein L580L,3233,99.81,L580L,pol_protein,C1738T,C to T,complex,3096,0 -1.fastq,pol_protein L580L,3235,99.83,L580L,pol_protein,G1740A,G to A,complex,2967,0 -1.fastq,pol_protein E581E,3238,97.95,E581E,pol_protein,G1743A,G to A,synonymous SNV,2962,0 -1.fastq,pol_protein P584P,3247,99.51,P584P,pol_protein,C1752T,C to T,synonymous SNV,2460,0 -1.fastq,pol_protein L585M,3248,99.96,L585M,pol_protein,C1753A,C to A,complex,2462,0 -1.fastq,pol_protein L585L,3250,99.11,L585L,pol_protein,G1755A,G to A,complex,2482,0 -1.fastq,pol_protein E586K,3251,99.06,E586K,pol_protein,G1756A,G to A,complex,2474,0 -1.fastq,pol_protein E586V,3252,99.51,E586V,pol_protein,A1757T,A to T,complex,2483,0 -1.fastq,pol_protein V588A,3258,99.88,V588A,pol_protein,T1763C,T to C,nonsynonymous SNV,2442,0 -1.fastq,pol_protein V593V,3274,100,V593V,pol_protein,G1779A,G to A,synonymous SNV,2028,0 -1.fastq,pol_protein G595G,3280,100,G595G,pol_protein,A1785G,A to G,synonymous SNV,1670,0 -1.fastq,pol_protein A596A,3283,99.88,A596A,pol_protein,G1788A,G to A,synonymous SNV,1673,0 -1.fastq,pol_protein N598N,3289,99.61,N598N,pol_protein,T1794C,T to C,synonymous SNV,1554,0 -1.fastq,pol_protein E600E,3295,99.64,E600E,pol_protein,A1800G,A to G,synonymous SNV,1403,0 -1.fastq,pol_protein V603L,3302,99.92,V603L,pol_protein,G1807T,G to T,nonsynonymous SNV,1227,0 -1.fastq,pol_protein G607G,3316,98.9,G607G,pol_protein,G1821A,G to A,synonymous SNV,548,0 -1.fastq,pol_protein R612K,3330,53.33,R612K,pol_protein,G1835A,G to A,complex,15,0 -1.fastq,pol_protein R612R,3331,6.67,R612R,pol_protein,A1836G,A to G,complex,15,0 -1.fastq,pol_protein R614R,3337,92.86,R614R,pol_protein,G1842A,G to A,synonymous SNV,14,0 -1.fastq,pol_protein Q615Q,3340,100,Q615Q,pol_protein,G1845A,G to A,synonymous SNV,12,0 -1.fastq,pol_protein K616K,3343,15.38,K616K,pol_protein,A1848G,A to G,synonymous SNV,13,0 -1.fastq,pol_protein V617I,3344,15.38,V617I,pol_protein,G1849A,G to A,nonsynonymous SNV,13,0 -1.fastq,pol_protein I618V,3347,91.67,I618V,pol_protein,A1852G,A to G,complex,13,0 -1.fastq,pol_protein I618I,3349,60,I618I,pol_protein,T1854C,T to C,complex,12,0 -1.fastq,pol_protein T619S,3350,100,T619S,pol_protein,A1855T,A to T,complex,11,0 -1.fastq,pol_protein T619T,3352,23.08,T619T,pol_protein,T1857C,T to C,complex,13,0 -1.fastq,pol_protein E622D,3361,81.25,E622D,pol_protein,A1866C,A to C,nonsynonymous SNV,16,0 -1.fastq,pol_protein T624T,3367,5.88,T624T,pol_protein,A1872T,A to T,synonymous SNV,17,0 -1.fastq,pol_protein K627K,3376,6.67,K627K,pol_protein,G1881A,G to A,synonymous SNV,15,0 -1.fastq,pol_protein A628T,3377,84.62,A628T,pol_protein,G1882A,G to A,nonsynonymous SNV,14,0 -1.fastq,pol_protein E629E,3382,68.75,E629E,pol_protein,A1887G,A to G,synonymous SNV,16,0 -1.fastq,pol_protein I633I,3394,100,I633I,pol_protein,C1899T,C to T,synonymous SNV,16,0 -1.fastq,pol_protein Q634K,3395,60,Q634K,pol_protein,C1900A,C to A,complex,16,0 -1.fastq,pol_protein Q634H,3397,71.43,Q634H,pol_protein,G1902T,G to T,complex,15,0 -1.fastq,pol_protein Q638Q,3409,31.25,Q638Q,pol_protein,G1914A,G to A,synonymous SNV,17,0 -1.fastq,pol_protein S640S,3415,40,S640S,pol_protein,A1920G,A to G,synonymous SNV,15,0 -1.fastq,pol_protein S642L,3420,64.29,S642L,pol_protein,C1925T,C to T,nonsynonymous SNV,15,0 -1.fastq,pol_protein E643E,3424,100,E643E,pol_protein,G1929A,G to A,synonymous SNV,14,0 -1.fastq,pol_protein N645N,3430,35.71,N645N,pol_protein,C1935T,C to T,synonymous SNV,14,0 -1.fastq,pol_protein V647V,3436,100,V647V,pol_protein,G1941A,G to A,synonymous SNV,27,0 -1.fastq,pol_protein Q651Q,3448,99.25,Q651Q,pol_protein,G1953A,G to A,synonymous SNV,537,0 -1.fastq,pol_protein A653A,3454,100,A653A,pol_protein,C1959A,C to A,synonymous SNV,835,0 -1.fastq,pol_protein L654I,3455,16.25,L654I,pol_protein,T1960A,T to A,nonsynonymous SNV,1017,0 -1.fastq,pol_protein Q658Q,3469,99.65,Q658Q,pol_protein,A1974G,A to G,synonymous SNV,1725,0 -1.fastq,pol_protein K663K,3484,99.8,K663K,pol_protein,G1989A,G to A,synonymous SNV,2506,0 -1.fastq,pol_protein E667E,3496,99.93,E667E,pol_protein,A2001G,A to G,synonymous SNV,2979,0 -1.fastq,pol_protein L668L,3499,99.97,L668L,pol_protein,G2004A,G to A,synonymous SNV,3006,0 -1.fastq,pol_protein V669V,3502,100,V669V,pol_protein,T2007C,T to C,synonymous SNV,3079,0 -1.fastq,pol_protein E674E,3517,99.95,E674E,pol_protein,A2022G,A to G,synonymous SNV,4082,0 -1.fastq,pol_protein L676L,3521,99.9,L676L,pol_protein,T2026C,T to C,synonymous SNV,4204,0 -1.fastq,pol_protein N678K,3529,100,N678K,pol_protein,C2034A,C to A,nonsynonymous SNV,4704,0 -1.fastq,pol_protein I682V,3539,99.98,I682V,pol_protein,A2044G,A to G,nonsynonymous SNV,5186,0 -1.fastq,pol_protein L684L,3547,99.98,L684L,pol_protein,G2052T,G to T,synonymous SNV,5398,0 -1.fastq,pol_protein S685A,3548,99.89,S685A,pol_protein,T2053G,T to G,nonsynonymous SNV,5423,0 -1.fastq,pol_protein H690H,3565,100,H690H,pol_protein,T2070C,T to C,synonymous SNV,6491,0 -1.fastq,pol_protein D700D,3595,100,D700D,pol_protein,C2100T,C to T,synonymous SNV,7306,0 -1.fastq,pol_protein V703V,3604,99.93,V703V,pol_protein,A2109C,A to C,synonymous SNV,6923,0 -1.fastq,pol_protein S705G,3608,27.96,S705G,pol_protein,A2113G,A to G,complex,7010,0 -1.fastq,pol_protein S705T,3609,74.21,S705T,pol_protein,G2114C,G to C,complex,7009,0 -1.fastq,pol_protein K709R,3621,99.89,K709R,pol_protein,A2126G,A to G,nonsynonymous SNV,6160,0 -1.fastq,pol_protein V710V,3625,99.85,V710V,pol_protein,G2130A,G to A,synonymous SNV,6178,0 -1.fastq,pol_protein L711L,3628,99.92,L711L,pol_protein,G2133A,G to A,synonymous SNV,6065,0 -1.fastq,pol_protein F712F,3631,99.97,F712F,pol_protein,C2136T,C to T,synonymous SNV,6048,0 -1.fastq,pol_protein L713L,3632,99.97,L713L,pol_protein,C2137T,C to T,synonymous SNV,6053,0 -1.fastq,pol_protein I716L,3641,1.06,I716L,pol_protein,A2146C,A to C,nonsynonymous SNV,7316,0 -1.fastq,pol_protein A719A,3652,99.94,A719A,pol_protein,T2157C,T to C,synonymous SNV,7035,0 -1.fastq,pol_protein E721E,3658,99.89,E721E,pol_protein,A2163G,A to G,synonymous SNV,6196,0 -1.fastq,pol_protein E722D,3661,99.93,E722D,pol_protein,G2166C,G to C,nonsynonymous SNV,6200,0 -1.fastq,pol_protein E724E,3667,99.41,E724E,pol_protein,A2172G,A to G,synonymous SNV,6297,0 -1.fastq,pol_protein K725K,3670,99.97,K725K,pol_protein,G2175A,G to A,synonymous SNV,6300,0 -1.fastq,pol_protein N728S,3678,100,N728S,pol_protein,A2183G,A to G,complex,6173,0 -1.fastq,pol_protein N728N,3679,99.97,N728N,pol_protein,C2184T,C to T,complex,6183,0 -1.fastq,pol_protein N738N,3709,99.97,N738N,pol_protein,T2214C,T to C,synonymous SNV,6978,0 -1.fastq,pol_protein P741P,3718,99.94,P741P,pol_protein,C2223T,C to T,synonymous SNV,6951,0 -1.fastq,pol_protein A749A,3742,99.92,A749A,pol_protein,T2247C,T to C,synonymous SNV,6512,0 -1.fastq,pol_protein S750C,3743,99.94,S750C,pol_protein,A2248T,A to T,nonsynonymous SNV,6511,0 -1.fastq,pol_protein K753K,3754,100,K753K,pol_protein,G2259A,G to A,synonymous SNV,6523,0 -1.fastq,pol_protein L756Q,3762,99.94,L756Q,pol_protein,T2267A,T to A,nonsynonymous SNV,6381,0 -1.fastq,pol_protein G758G,3769,99.92,G758G,pol_protein,G2274A,G to A,synonymous SNV,6330,0 -1.fastq,pol_protein I761M,3778,99.92,I761M,pol_protein,A2283G,A to G,nonsynonymous SNV,6299,0 -1.fastq,pol_protein D766D,3793,99.97,D766D,pol_protein,T2298C,T to C,synonymous SNV,6129,0 -1.fastq,pol_protein G770G,3805,99.95,G770G,pol_protein,G2310A,G to A,synonymous SNV,5911,0 -1.fastq,pol_protein Q773Q,3814,88.29,Q773Q,pol_protein,A2319G,A to G,synonymous SNV,5536,0 -1.fastq,pol_protein L774L,3815,99.91,L774L,pol_protein,T2320C,T to C,synonymous SNV,5477,0 -1.fastq,pol_protein L779L,3830,7.28,L779L,pol_protein,T2335C,T to C,synonymous SNV,5675,0 -1.fastq,pol_protein V783I,3842,41.86,V783I,pol_protein,G2347A,G to A,complex,4955,0 -1.fastq,pol_protein V783V,3844,99.98,V783V,pol_protein,C2349T,C to T,complex,4833,0 -1.fastq,pol_protein V788V,3859,99.9,V788V,pol_protein,C2364T,C to T,synonymous SNV,4181,0 -1.fastq,pol_protein G793G,3874,99.94,G793G,pol_protein,C2379A,C to A,synonymous SNV,3366,0 -1.fastq,pol_protein Y794Y,3877,99.88,Y794Y,pol_protein,C2382T,C to T,synonymous SNV,3347,0 -1.fastq,pol_protein I800I,3895,99.89,I800I,pol_protein,C2400T,C to T,synonymous SNV,2716,0 -1.fastq,pol_protein E803E,3904,99.92,E803E,pol_protein,A2409G,A to G,synonymous SNV,2375,0 -1.fastq,pol_protein G805G,3910,99.95,G805G,pol_protein,A2415G,A to G,synonymous SNV,1970,0 -1.fastq,pol_protein Q806Q,3913,99.9,Q806Q,pol_protein,A2418G,A to G,synonymous SNV,1951,0 -1.fastq,pol_protein I812L,3929,100,I812L,pol_protein,A2434C,A to C,complex,1301,0 -1.fastq,pol_protein I812I,3931,99.92,I812I,pol_protein,A2436C,A to C,complex,1301,0 -1.fastq,pol_protein A817G,3945,100,A817G,pol_protein,C2450G,C to G,nonsynonymous SNV,925,0 -1.fastq,pol_protein I821V,3956,100,I821V,pol_protein,A2461G,A to G,complex,199,0 -1.fastq,pol_protein I821I,3958,98.81,I821I,pol_protein,C2463A,C to A,complex,209,0 -1.fastq,pol_protein K822K,3961,41.43,K822K,pol_protein,A2466G,A to G,synonymous SNV,263,0 -1.fastq,pol_protein V823I,3962,92.39,V823I,pol_protein,G2467A,G to A,complex,261,0 -1.fastq,pol_protein V823A,3963,97.96,V823A,pol_protein,T2468C,T to C,complex,203,0 -1.fastq,pol_protein G829G,3982,98.36,G829G,pol_protein,C2487T,C to T,synonymous SNV,915,0 -1.fastq,pol_protein S830R,3983,99.44,S830R,pol_protein,A2488C,A to C,complex,895,0 -1.fastq,pol_protein S830T,3984,96.26,S830T,pol_protein,G2489C,G to C,complex,955,0 -1.fastq,pol_protein S830S,3985,99.67,S830S,pol_protein,T2490C,T to C,complex,964,0 -1.fastq,pol_protein T833I,3993,99.66,T833I,pol_protein,C2498T,C to T,nonsynonymous SNV,1805,0 -1.fastq,pol_protein A835T,3998,99.89,A835T,pol_protein,G2503A,G to A,nonsynonymous SNV,1911,0 -1.fastq,pol_protein A839A,4012,99.92,A839A,pol_protein,A2517C,A to C,synonymous SNV,2659,0 -1.fastq,pol_protein A844A,4027,99.97,A844A,pol_protein,G2532A,G to A,synonymous SNV,3103,0 -1.fastq,pol_protein G845G,4030,99.94,G845G,pol_protein,T2535G,T to G,synonymous SNV,3100,0 -1.fastq,pol_protein I846I,4033,99.87,I846I,pol_protein,C2538T,C to T,synonymous SNV,3103,0 -1.fastq,pol_protein Q847K,4034,99.94,Q847K,pol_protein,C2539A,C to A,complex,3104,0 -1.fastq,pol_protein Q847Q,4036,99.87,Q847Q,pol_protein,A2541G,A to G,complex,3137,0 -1.fastq,pol_protein G851G,4048,99.98,G851G,pol_protein,A2553C,A to C,synonymous SNV,4728,0 -1.fastq,pol_protein P853S,4052,2.33,P853S,pol_protein,C2557T,C to T,nonsynonymous SNV,5057,0 -1.fastq,pol_protein P856P,4063,100,P856P,pol_protein,T2568C,T to C,synonymous SNV,5419,0 -1.fastq,pol_protein Q857Q,4066,22.14,Q857Q,pol_protein,A2571G,A to G,synonymous SNV,5835,0 -1.fastq,pol_protein Q859Q,4072,99.98,Q859Q,pol_protein,G2577A,G to A,synonymous SNV,6078,0 -1.fastq,pol_protein S864S,4087,99.91,S864S,pol_protein,C2592T,C to T,synonymous SNV,7030,0 -1.fastq,pol_protein I872I,4111,99.96,I872I,pol_protein,C2616T,C to T,synonymous SNV,7478,0 -1.fastq,pol_protein G874G,4117,99.93,G874G,pol_protein,G2622A,G to A,synonymous SNV,7609,0 -1.fastq,pol_protein E878D,4129,99.99,E878D,pol_protein,G2634T,G to T,nonsynonymous SNV,7043,0 -1.fastq,pol_protein Q879Q,4132,99.96,Q879Q,pol_protein,A2637G,A to G,synonymous SNV,7102,0 -1.fastq,pol_protein E881E,4138,99.96,E881E,pol_protein,G2643A,G to A,synonymous SNV,7014,0 -1.fastq,pol_protein H882H,4141,98.52,H882H,pol_protein,C2646T,C to T,synonymous SNV,6939,0 -1.fastq,pol_protein I893I,4174,99.96,I893I,pol_protein,T2679C,T to C,synonymous SNV,7263,0 -1.fastq,pol_protein D913D,4234,100,D913D,pol_protein,T2739C,T to C,synonymous SNV,5517,0 -1.fastq,pol_protein E923E,4264,2.04,E923E,pol_protein,A2769G,A to G,synonymous SNV,4527,0 -1.fastq,pol_protein L924L,4265,99.79,L924L,pol_protein,T2770C,T to C,synonymous SNV,4357,0 -1.fastq,pol_protein K926K,4273,99.97,K926K,pol_protein,G2778A,G to A,synonymous SNV,3935,0 -1.fastq,pol_protein I929T,4281,99.8,I929T,pol_protein,T2786C,T to C,nonsynonymous SNV,3578,0 -1.fastq,pol_protein V936V,4303,99.54,V936V,pol_protein,T2808C,T to C,synonymous SNV,2678,0 -1.fastq,pol_protein R939R,4312,99.89,R939R,pol_protein,A2817G,A to G,synonymous SNV,7613,0 -1.fastq,pol_protein D943D,4324,99.72,D943D,pol_protein,C2829T,C to T,synonymous SNV,6600,0 -1.fastq,pol_protein P944P,4327,99.89,P944P,pol_protein,T2832A,T to A,synonymous SNV,6567,0 -1.fastq,pol_protein I945L,4328,99.81,I945L,pol_protein,A2833C,A to C,nonsynonymous SNV,6498,0 -1.fastq,pol_protein A950A,4345,99.97,A950A,pol_protein,C2850A,C to A,synonymous SNV,6033,0 -1.fastq,pol_protein K951K,4348,99.97,K951K,pol_protein,A2853G,A to G,synonymous SNV,6010,0 -1.fastq,pol_protein L952L,4351,99.97,L952L,pol_protein,A2856T,A to T,synonymous SNV,5932,0 -1.fastq,pol_protein D967D,4396,68.92,D967D,pol_protein,C2901T,C to T,synonymous SNV,5483,0 -1.fastq,pol_protein K969K,4402,100,K969K,pol_protein,G2907A,G to A,synonymous SNV,5436,0 -1.fastq,pol_protein V971V,4408,99.93,V971V,pol_protein,A2913G,A to G,synonymous SNV,5419,0 -1.fastq,pol_protein R973R,4414,99.93,R973R,pol_protein,G2919A,G to A,synonymous SNV,5407,0 -1.fastq,pol_protein R974R,4417,99.91,R974R,pol_protein,G2922A,G to A,synonymous SNV,5404,0 -1.fastq,pol_protein K977K,4426,99.89,K977K,pol_protein,A2931G,A to G,synonymous SNV,5404,0 -1.fastq,pol_protein D981D,4438,81.46,D981D,pol_protein,T2943C,T to C,synonymous SNV,5387,0 -1.fastq,vif_protein V7E,4459,25,V7E,vif_protein,T20A,T to A,nonsynonymous SNV,4,0 -1.fastq,vif_protein R17K,4489,75,R17K,vif_protein,G50A,G to A,nonsynonymous SNV,4,0 -1.fastq,pol_protein D999N,4490,75,D999N,pol_protein,G2995A,G to A,nonsynonymous SNV,4,0 -1.fastq,vif_protein R19K,4495,25,R19K,vif_protein,G56A,G to A,nonsynonymous SNV,4,0 -1.fastq,vif_protein K26K,4517,100,K26K,vif_protein,G78A,G to A,synonymous SNV,3,0 -1.fastq,vif_protein Y30Y,4529,100,Y30Y,vif_protein,T90C,T to C,synonymous SNV,2,0 -1.fastq,vif_protein R31R,4530,100,R31R,vif_protein,C91A,C to A,complex,2,0 -1.fastq,vif_protein R31P,4531,100,R31P,vif_protein,G92C,G to C,complex,2,0 -1.fastq,vif_protein G33E,4537,100,G33E,vif_protein,G98A,G to A,nonsynonymous SNV,2,0 -1.fastq,vif_protein K34R,4540,100,K34R,vif_protein,A101G,A to G,nonsynonymous SNV,2,0 -1.fastq,vif_protein Q36K,4545,100,Q36K,vif_protein,C106A,C to A,complex,2,0 -1.fastq,vif_protein Q36H,4547,100,Q36H,vif_protein,G108T,G to T,complex,2,0 -1.fastq,vif_protein K67T,4639,100,K67T,vif_protein,A200C,A to C,nonsynonymous SNV,2,0 -1.fastq,vif_protein G71G,4652,75,G71G,vif_protein,G213T,G to T,synonymous SNV,4,0 -1.fastq,vif_protein Q73Q,4658,100,Q73Q,vif_protein,G219A,G to A,synonymous SNV,4,0 -1.fastq,vif_protein R77R,4670,100,R77R,vif_protein,G231A,G to A,synonymous SNV,5,0 -1.fastq,vif_protein E78E,4673,100,E78E,vif_protein,G234A,G to A,synonymous SNV,5,0 -1.fastq,vif_protein L81L,4682,100,L81L,vif_protein,A243G,A to G,synonymous SNV,5,0 -1.fastq,vif_protein H83Q,4688,40,H83Q,vif_protein,T249G,T to G,nonsynonymous SNV,5,0 -1.fastq,vif_protein R90R,4709,40,R90R,vif_protein,A270G,A to G,synonymous SNV,5,0 -1.fastq,vif_protein L91L,4710,100,L91L,vif_protein,C271T,C to T,complex,5,0 -1.fastq,vif_protein L91Q,4711,40,L91Q,vif_protein,T272A,T to A,complex,5,0 -1.fastq,vif_protein L91L,4712,40,L91L,vif_protein,G273A,G to A,complex,5,0 -1.fastq,vif_protein R92R,4715,33.33,R92R,vif_protein,A276G,A to G,synonymous SNV,6,0 -1.fastq,vif_protein R93R,4718,16.67,R93R,vif_protein,A279G,A to G,synonymous SNV,6,0 -1.fastq,vif_protein V98I,4731,20,V98I,vif_protein,G292A,G to A,nonsynonymous SNV,5,0 -1.fastq,vif_protein D99D,4736,16.67,D99D,vif_protein,C297T,C to T,synonymous SNV,6,0 -1.fastq,vif_protein G101S,4740,33.33,G101S,vif_protein,G301A,G to A,complex,6,0 -1.fastq,vif_protein G101D,4741,50,G101D,vif_protein,G302A,G to A,complex,6,0 -1.fastq,vif_protein L102L,4743,25,L102L,vif_protein,C304T,C to T,complex,4,0 -1.fastq,vif_protein L102L,4745,40,L102L,vif_protein,G306A,G to A,complex,5,0 -1.fastq,vif_protein Q105Q,4754,40,Q105Q,vif_protein,G315A,G to A,synonymous SNV,5,0 -1.fastq,vif_protein L106L,4757,20,L106L,vif_protein,A318G,A to G,synonymous SNV,5,0 -1.fastq,vif_protein I107I,4760,50,I107I,vif_protein,T321C,T to C,synonymous SNV,4,0 -1.fastq,vif_protein H108H,4763,25,H108H,vif_protein,T324C,T to C,synonymous SNV,4,0 -1.fastq,vif_protein M109L,4764,50,M109L,vif_protein,A325C,A to C,nonsynonymous SNV,4,0 -1.fastq,vif_protein Y111Y,4772,25,Y111Y,vif_protein,T333C,T to C,synonymous SNV,4,0 -1.fastq,vif_protein D113D,4778,25,D113D,vif_protein,T339C,T to C,synonymous SNV,4,0 -1.fastq,vif_protein A116T,4785,100,A116T,vif_protein,G346A,G to A,nonsynonymous SNV,4,0 -1.fastq,vif_protein D117E,4790,50,D117E,vif_protein,C351A,C to A,nonsynonymous SNV,4,0 -1.fastq,vif_protein R121R,4802,66.67,R121R,vif_protein,A363G,A to G,synonymous SNV,3,0 -1.fastq,vif_protein T130S,4828,100,T130S,vif_protein,C389G,C to G,nonsynonymous SNV,2,0 -1.fastq,vif_protein S144S,4871,100,S144S,vif_protein,A432T,A to T,synonymous SNV,2,0 -1.fastq,vif_protein L145L,4872,100,L145L,vif_protein,T433C,T to C,synonymous SNV,2,0 -1.fastq,vif_protein L153L,4898,66.67,L153L,vif_protein,A459G,A to G,synonymous SNV,3,0 -1.fastq,vif_protein Q158K,4911,100,Q158K,vif_protein,C472A,C to A,nonsynonymous SNV,2,0 -1.fastq,vif_protein P161P,4922,25,P161P,vif_protein,A483G,A to G,synonymous SNV,4,0 -1.fastq,vif_protein L163L,4926,25,L163L,vif_protein,C487T,C to T,synonymous SNV,4,0 -1.fastq,vif_protein K168K,4943,25,K168K,vif_protein,G504A,G to A,synonymous SNV,4,0 -1.fastq,vif_protein L169L,4944,25,L169L,vif_protein,T505C,T to C,synonymous SNV,4,0 -1.fastq,vif_protein V170I,4947,25,V170I,vif_protein,G508A,G to A,complex,4,0 -1.fastq,vif_protein V170A,4948,25,V170A,vif_protein,T509C,T to C,complex,4,0 -1.fastq,vif_protein R181K,4981,16.67,R181K,vif_protein,G542A,G to A,nonsynonymous SNV,6,0 -1.fastq,vif_protein G182D,4984,83.33,G182D,vif_protein,G545A,G to A,nonsynonymous SNV,6,0 -1.fastq,vif_protein R183H,4987,16.67,R183H,vif_protein,G548A,G to A,nonsynonymous SNV,6,0 -1.fastq,vif_protein G185E,4993,14.29,G185E,vif_protein,G554A,G to A,nonsynonymous SNV,7,0 -1.fastq,vif_protein N186S,4996,14.29,N186S,vif_protein,A557G,A to G,nonsynonymous SNV,7,0 -1.fastq,vif_protein I188T,5002,100,I188T,vif_protein,T563C,T to C,nonsynonymous SNV,5,0 -1.fastq,vpr_protein Q16K,5003,100,Q16K,vpr_protein,C46A,C to A,complex,5,0 -1.fastq,vpr_protein I22L,5021,100,I22L,vpr_protein,A64C,A to C,nonsynonymous SNV,7,0 -1.fastq,vpr_protein L23L,5024,100,L23L,vpr_protein,C67T,C to T,synonymous SNV,7,0 -1.fastq,vpr_protein E24E,5029,100,E24E,vpr_protein,A72G,A to G,synonymous SNV,7,0 -1.fastq,vpr_protein K27K,5038,12.5,K27K,vpr_protein,G81A,G to A,synonymous SNV,8,0 -1.fastq,vpr_protein Q28Q,5041,100,Q28Q,vpr_protein,A84G,A to G,synonymous SNV,8,0 -1.fastq,vpr_protein P37L,5067,14.29,P37L,vpr_protein,C110T,C to T,nonsynonymous SNV,7,0 -1.fastq,vpr_protein H40L,5076,83.33,H40L,vpr_protein,A119T,A to T,nonsynonymous SNV,6,0 -1.fastq,vpr_protein L42L,5081,100,L42L,vpr_protein,C124T,C to T,synonymous SNV,6,0 -1.fastq,vpr_protein D48E,5101,100,D48E,vpr_protein,C144A,C to A,nonsynonymous SNV,5,0 -1.fastq,vpr_protein V59A,5133,100,V59A,vpr_protein,T176C,T to C,complex,3,0 -1.fastq,vpr_protein V59V,5134,100,V59V,vpr_protein,A177T,A to T,complex,3,0 -1.fastq,vpr_protein I60I,5137,20,I60I,vpr_protein,A180C,A to C,synonymous SNV,5,0 -1.fastq,vpr_protein I63T,5145,20,I63T,vpr_protein,T188C,T to C,complex,5,0 -1.fastq,vpr_protein I63I,5146,100,I63I,vpr_protein,A189T,A to T,complex,5,0 -1.fastq,vpr_protein Q66Q,5155,20,Q66Q,vpr_protein,A198G,A to G,synonymous SNV,5,0 -1.fastq,vpr_protein L67L,5158,40,L67L,vpr_protein,A201G,A to G,synonymous SNV,5,0 -1.fastq,vpr_protein I70I,5167,50,I70I,vpr_protein,T210A,T to A,synonymous SNV,4,0 -1.fastq,vpr_protein C76C,5185,20,C76C,vpr_protein,C228T,C to T,synonymous SNV,5,0 -1.fastq,vpr_protein Q77Q,5188,60,Q77Q,vpr_protein,A231G,A to G,synonymous SNV,5,0 -1.fastq,vpr_protein S79S,5194,100,S79S,vpr_protein,T237C,T to C,synonymous SNV,6,0 -1.fastq,vpr_protein I83I,5206,100,I83I,vpr_protein,T249C,T to C,synonymous SNV,5,0 -1.fastq,vpr_protein L84S,5208,66.67,L84S,vpr_protein,T251C,T to C,nonsynonymous SNV,5,0 -1.fastq,vpr_protein R85Q,5211,20,R85Q,vpr_protein,G254A,G to A,nonsynonymous SNV,5,0 -1.fastq,vpr_protein R87R,5218,33.33,R87R,vpr_protein,A261G,A to G,synonymous SNV,6,0 -1.fastq,tat_protein N7S,5248,33.33,N7S,tat_protein,A20G,A to G,complex,6,0 -1.fastq,tat_protein N7K,5249,100,N7K,tat_protein,C21A,C to A,complex,6,0 -1.fastq,tat_protein N12K,5264,16.67,N12K,tat_protein,C36G,C to G,nonsynonymous SNV,6,0 -1.fastq,tat_protein S16S,5276,83.33,S16S,tat_protein,T48C,T to C,synonymous SNV,6,0 -1.fastq,tat_protein Q17Q,5279,100,Q17Q,tat_protein,G51A,G to A,synonymous SNV,5,0 -1.fastq,tat_protein A21A,5291,100,A21A,tat_protein,C63T,C to T,synonymous SNV,2,0 -1.fastq,tat_protein C22C,5294,100,C22C,tat_protein,C66T,C to T,synonymous SNV,2,0 -1.fastq,tat_protein T23N,5296,100,T23N,tat_protein,C68A,C to A,nonsynonymous SNV,2,0 -1.fastq,tat_protein A24T,5298,100,A24T,tat_protein,G70A,G to A,complex,2,0 -1.fastq,tat_protein A24E,5299,100,A24E,tat_protein,C71A,C to A,complex,2,0 -1.fastq,tat_protein C25C,5303,100,C25C,tat_protein,T75C,T to C,synonymous SNV,2,0 -1.fastq,tat_protein C27C,5309,100,C27C,tat_protein,C81T,C to T,synonymous SNV,2,0 -1.fastq,tat_protein L35Q,5332,100,L35Q,tat_protein,T104A,T to A,nonsynonymous SNV,3,0 -1.fastq,tat_protein Q39L,5344,100,Q39L,tat_protein,A116T,A to T,nonsynonymous SNV,4,0 -1.fastq,tat_protein A58T,5400,100,A58T,tat_protein,G172A,G to A,nonsynonymous SNV,4,0 -1.fastq,rev_protein R20K,5426,100,R20K,rev_protein,G59A,G to A,nonsynonymous SNV,4,0 -1.fastq,vpu_protein G7R,5486,100,G7R,vpu_protein,G19A,G to A,complex,2,0 -1.fastq,vpu_protein G7E,5487,100,G7E,vpu_protein,G20A,G to A,complex,2,0 -1.fastq,vpu_protein G13G,5506,100,G13G,vpu_protein,G39A,G to A,synonymous SNV,3,0 -1.fastq,vpu_protein I14V,5507,100,I14V,vpu_protein,A40G,A to G,nonsynonymous SNV,3,0 -1.fastq,vpu_protein L17L,5518,100,L17L,vpu_protein,A51G,A to G,synonymous SNV,4,0 -1.fastq,vpu_protein V19I,5522,100,V19I,vpu_protein,G55A,G to A,nonsynonymous SNV,4,0 -1.fastq,vpu_protein I21L,5528,100,I21L,vpu_protein,A61T,A to T,complex,4,0 -1.fastq,vpu_protein I21I,5530,25,I21I,vpu_protein,A63C,A to C,complex,4,0 -1.fastq,vpu_protein I22I,5533,100,I22I,vpu_protein,C66T,C to T,synonymous SNV,4,0 -1.fastq,vpu_protein I26V,5543,100,I26V,vpu_protein,A76G,A to G,nonsynonymous SNV,4,0 -1.fastq,vpu_protein K37K,5578,100,K37K,vpu_protein,G111A,G to A,synonymous SNV,2,0 -1.fastq,vpu_protein W38L,5580,100,W38L,vpu_protein,G113T,G to T,complex,2,0 -1.fastq,vpu_protein W38C,5581,100,W38C,vpu_protein,G114C,G to C,complex,2,0 -1.fastq,vpu_protein R40R,5587,100,R40R,vpu_protein,G120A,G to A,synonymous SNV,2,0 -1.fastq,vpu_protein H42N,5591,4.65,H42N,vpu_protein,C124A,C to A,complex,44,0 -1.fastq,vpu_protein H42Q,5593,100,H42Q,vpu_protein,T126G,T to G,complex,44,0 -1.fastq,vpu_protein D45D,5602,8.29,D45D,vpu_protein,C135T,C to T,synonymous SNV,425,0 -1.fastq,vpu_protein C46S,5603,100,C46S,vpu_protein,T136A,T to A,nonsynonymous SNV,424,0 -1.fastq,vpu_protein V48I,5609,100,V48I,vpu_protein,G142A,G to A,nonsynonymous SNV,513,0 -1.fastq,vpu_protein K49E,5612,98.84,K49E,vpu_protein,A145G,A to G,complex,531,0 -1.fastq,vpu_protein K49N,5614,99.03,K49N,vpu_protein,A147T,A to T,complex,551,0 -1.fastq,vpu_protein I51I,5620,99.39,I51I,vpu_protein,T153A,T to A,synonymous SNV,990,0 -1.fastq,vpu_protein R52R,5623,98.46,R52R,vpu_protein,G156A,G to A,synonymous SNV,1060,0 -1.fastq,vpu_protein G59G,5644,54.69,G59G,vpu_protein,C177T,C to T,synonymous SNV,3676,0 -1.fastq,envelope_glycoprotein R8K,5668,99.79,R8K,envelope_glycoprotein,G23A,G to A,nonsynonymous SNV,3285,0 -1.fastq,envelope_glycoprotein P11Q,5677,99.88,P11Q,envelope_glycoprotein,C32A,C to A,nonsynonymous SNV,3273,0 -1.fastq,vpu_protein T71A,5678,99.75,T71A,vpu_protein,A211G,A to G,nonsynonymous SNV,3271,0 -1.fastq,vpu_protein R79G,5702,14.29,R79G,vpu_protein,A235G,A to G,nonsynonymous SNV,8,0 -1.fastq,envelope_glycoprotein Y27C,5725,100,Y27C,envelope_glycoprotein,A80G,A to G,nonsynonymous SNV,3,0 -1.fastq,envelope_glycoprotein N28S,5728,100,N28S,envelope_glycoprotein,A83G,A to G,nonsynonymous SNV,3,0 -1.fastq,envelope_glycoprotein V29V,5732,100,V29V,envelope_glycoprotein,G87A,G to A,synonymous SNV,3,0 -1.fastq,envelope_glycoprotein M30L,5733,100,M30L,envelope_glycoprotein,A88T,A to T,nonsynonymous SNV,3,0 -1.fastq,envelope_glycoprotein V36V,5753,100,V36V,envelope_glycoprotein,A108C,A to C,synonymous SNV,4490,0 -1.fastq,envelope_glycoprotein Y37Y,5756,99.89,Y37Y,envelope_glycoprotein,C111T,C to T,synonymous SNV,4509,0 -1.fastq,envelope_glycoprotein V40V,5765,99.76,V40V,envelope_glycoprotein,A120G,A to G,synonymous SNV,5006,0 -1.fastq,envelope_glycoprotein K47T,5785,99.88,K47T,envelope_glycoprotein,A140C,A to C,complex,4121,0 -1.fastq,envelope_glycoprotein K47N,5786,99.81,K47N,envelope_glycoprotein,A141C,A to C,complex,4120,0 -1.fastq,envelope_glycoprotein V48I,5787,100,V48I,envelope_glycoprotein,G142A,G to A,complex,4125,0 -1.fastq,envelope_glycoprotein V48A,5788,99.76,V48A,envelope_glycoprotein,T143C,T to C,complex,4135,0 -1.fastq,envelope_glycoprotein V48V,5789,99.71,V48V,envelope_glycoprotein,T144C,T to C,complex,4138,0 -1.fastq,envelope_glycoprotein L50L,5793,99.81,L50L,envelope_glycoprotein,C148T,C to T,synonymous SNV,4251,0 -1.fastq,envelope_glycoprotein F51F,5798,99.91,F51F,envelope_glycoprotein,C153T,C to T,synonymous SNV,4430,0 -1.fastq,envelope_glycoprotein E60D,5825,99.88,E60D,envelope_glycoprotein,G180T,G to T,nonsynonymous SNV,4187,0 -1.fastq,envelope_glycoprotein K61T,5827,100,K61T,envelope_glycoprotein,A182C,A to C,nonsynonymous SNV,4181,0 -1.fastq,envelope_glycoprotein E62E,5831,99.86,E62E,envelope_glycoprotein,A186G,A to G,synonymous SNV,4298,0 -1.fastq,envelope_glycoprotein V63V,5834,100,V63V,envelope_glycoprotein,C189A,C to A,synonymous SNV,4326,0 -1.fastq,envelope_glycoprotein I66V,5841,100,I66V,envelope_glycoprotein,A196G,A to G,complex,4316,0 -1.fastq,envelope_glycoprotein I66I,5843,99.86,I66I,envelope_glycoprotein,C198T,C to T,complex,4301,0 -1.fastq,envelope_glycoprotein A68A,5849,99.86,A68A,envelope_glycoprotein,T204C,T to C,synonymous SNV,4287,0 -1.fastq,envelope_glycoprotein T69T,5852,99.81,T69T,envelope_glycoprotein,A207T,A to T,synonymous SNV,4332,0 -1.fastq,envelope_glycoprotein V73V,5864,99.86,V73V,envelope_glycoprotein,G219A,G to A,synonymous SNV,5033,0 -1.fastq,envelope_glycoprotein V83I,5892,66.67,V83I,envelope_glycoprotein,G247A,G to A,complex,3486,0 -1.fastq,envelope_glycoprotein V83D,5893,44.44,V83D,envelope_glycoprotein,T248A,T to A,complex,34,0 -1.fastq,envelope_glycoprotein V83V,5894,50,V83V,envelope_glycoprotein,T249A,T to A,complex,33,0 -1.fastq,envelope_glycoprotein L84M,5895,50,L84M,envelope_glycoprotein,T250A,T to A,nonsynonymous SNV,34,0 -1.fastq,envelope_glycoprotein K85E,5898,84.38,K85E,envelope_glycoprotein,A253G,A to G,nonsynonymous SNV,58,0 -1.fastq,envelope_glycoprotein V87V,5906,99.76,V87V,envelope_glycoprotein,A261G,A to G,synonymous SNV,4152,0 -1.fastq,envelope_glycoprotein N90Y,5913,99.93,N90Y,envelope_glycoprotein,A268T,A to T,nonsynonymous SNV,4293,0 -1.fastq,envelope_glycoprotein F91F,5918,31.91,F91F,envelope_glycoprotein,T273C,T to C,synonymous SNV,4435,0 -1.fastq,envelope_glycoprotein V99V,5942,99.88,V99V,envelope_glycoprotein,G297A,G to A,synonymous SNV,4304,0 -1.fastq,envelope_glycoprotein D100E,5945,99.91,D100E,envelope_glycoprotein,T300A,T to A,nonsynonymous SNV,4317,0 -1.fastq,envelope_glycoprotein I107I,5966,99.95,I107I,envelope_glycoprotein,T321C,T to C,synonymous SNV,4282,0 -1.fastq,envelope_glycoprotein P116P,5993,100,P116P,envelope_glycoprotein,C348A,C to A,synonymous SNV,3726,0 -1.fastq,envelope_glycoprotein K119E,6000,99.91,K119E,envelope_glycoprotein,A355G,A to G,complex,3353,0 -1.fastq,envelope_glycoprotein K119K,6002,99.91,K119K,envelope_glycoprotein,G357A,G to A,complex,3329,0 -1.fastq,envelope_glycoprotein L120L,6005,99.94,L120L,envelope_glycoprotein,G360A,G to A,synonymous SNV,3327,0 -1.fastq,envelope_glycoprotein V125V,6020,99.93,V125V,envelope_glycoprotein,C375T,C to T,synonymous SNV,2949,0 -1.fastq,envelope_glycoprotein C129C,6032,87.5,C129C,envelope_glycoprotein,T387C,T to C,synonymous SNV,27,0 -1.fastq,envelope_glycoprotein V213V,6284,2.94,V213V,envelope_glycoprotein,A639T,A to T,synonymous SNV,40,0 -1.fastq,envelope_glycoprotein Q215Q,6290,98.47,Q215Q,envelope_glycoprotein,A645G,A to G,synonymous SNV,132,0 -1.fastq,envelope_glycoprotein V220V,6305,99.86,V220V,envelope_glycoprotein,C660A,C to A,synonymous SNV,710,0 -1.fastq,envelope_glycoprotein S221T,6306,99.43,S221T,envelope_glycoprotein,T661A,T to A,complex,714,0 -1.fastq,envelope_glycoprotein S221S,6308,99.86,S221S,envelope_glycoprotein,T663C,T to C,complex,713,0 -1.fastq,envelope_glycoprotein D223E,6314,99.88,D223E,envelope_glycoprotein,C669A,C to A,nonsynonymous SNV,845,0 -1.fastq,envelope_glycoprotein I225I,6320,98.38,I225I,envelope_glycoprotein,C675T,C to T,synonymous SNV,928,0 -1.fastq,envelope_glycoprotein P226P,6323,99.89,P226P,envelope_glycoprotein,T678C,T to C,synonymous SNV,929,0 -1.fastq,envelope_glycoprotein A231A,6338,99.76,A231A,envelope_glycoprotein,T693C,T to C,synonymous SNV,1693,0 -1.fastq,envelope_glycoprotein P232P,6341,99.83,P232P,envelope_glycoprotein,A696G,A to G,synonymous SNV,1732,0 -1.fastq,envelope_glycoprotein Y235F,6349,99.9,Y235F,envelope_glycoprotein,A704T,A to T,nonsynonymous SNV,2068,0 -1.fastq,envelope_glycoprotein K239R,6361,99.83,K239R,envelope_glycoprotein,A716G,A to G,nonsynonymous SNV,2392,0 -1.fastq,envelope_glycoprotein N241N,6368,99.81,N241N,envelope_glycoprotein,T723C,T to C,synonymous SNV,2662,0 -1.fastq,envelope_glycoprotein S246N,6382,100,S246N,envelope_glycoprotein,G737A,G to A,nonsynonymous SNV,3041,0 -1.fastq,envelope_glycoprotein K248T,6388,99.97,K248T,envelope_glycoprotein,A743C,A to C,nonsynonymous SNV,3188,0 -1.fastq,envelope_glycoprotein C251C,6398,99.94,C251C,envelope_glycoprotein,C753T,C to T,synonymous SNV,3516,0 -1.fastq,envelope_glycoprotein N252K,6401,100,N252K,envelope_glycoprotein,T756A,T to A,nonsynonymous SNV,3534,0 -1.fastq,envelope_glycoprotein K264R,6436,62.84,K264R,envelope_glycoprotein,A791G,A to G,nonsynonymous SNV,3761,0 -1.fastq,envelope_glycoprotein V266V,6443,99.88,V266V,envelope_glycoprotein,G798A,G to A,synonymous SNV,3489,0 -1.fastq,envelope_glycoprotein V267V,6446,99.82,V267V,envelope_glycoprotein,A801C,A to C,synonymous SNV,3459,0 -1.fastq,envelope_glycoprotein Q270Q,6455,99.79,Q270Q,envelope_glycoprotein,A810G,A to G,synonymous SNV,2896,0 -1.fastq,envelope_glycoprotein L271L,6458,99.83,L271L,envelope_glycoprotein,A813G,A to G,synonymous SNV,2879,0 -1.fastq,envelope_glycoprotein L272L,6459,99.79,L272L,envelope_glycoprotein,C814T,C to T,synonymous SNV,2877,0 -1.fastq,envelope_glycoprotein G275G,6470,99.78,G275G,envelope_glycoprotein,T825C,T to C,synonymous SNV,2723,0 -1.fastq,envelope_glycoprotein S276S,6473,99.85,S276S,envelope_glycoprotein,C828T,C to T,synonymous SNV,2704,0 -1.fastq,envelope_glycoprotein K280E,6483,99.95,K280E,envelope_glycoprotein,A838G,A to G,nonsynonymous SNV,2127,0 -1.fastq,envelope_glycoprotein E281E,6488,100,E281E,envelope_glycoprotein,A843G,A to G,synonymous SNV,2075,0 -1.fastq,envelope_glycoprotein I282V,6489,60.1,I282V,envelope_glycoprotein,A844G,A to G,nonsynonymous SNV,2066,0 -1.fastq,envelope_glycoprotein I283V,6492,99.8,I283V,envelope_glycoprotein,A847G,A to G,nonsynonymous SNV,2057,0 -1.fastq,envelope_glycoprotein E287A,6505,98.64,E287A,envelope_glycoprotein,A860C,A to C,complex,515,0 -1.fastq,envelope_glycoprotein E287D,6506,98.63,E287D,envelope_glycoprotein,A861C,A to C,complex,513,0 -1.fastq,envelope_glycoprotein N288N,6509,100,N288N,envelope_glycoprotein,C864T,C to T,synonymous SNV,514,0 -1.fastq,envelope_glycoprotein L289L,6510,98.63,L289L,envelope_glycoprotein,C865T,C to T,complex,513,0 -1.fastq,envelope_glycoprotein L289L,6512,98.63,L289L,envelope_glycoprotein,G867C,G to C,complex,514,0 -1.fastq,envelope_glycoprotein T290S,6513,98.64,T290S,envelope_glycoprotein,A868T,A to T,complex,516,0 -1.fastq,envelope_glycoprotein T290T,6515,98.82,T290T,envelope_glycoprotein,A870G,A to G,complex,510,0 -1.fastq,envelope_glycoprotein D291N,6516,1.18,D291N,envelope_glycoprotein,G871A,G to A,nonsynonymous SNV,508,0 -1.fastq,envelope_glycoprotein K294K,6527,1.18,K294K,envelope_glycoprotein,A882G,A to G,synonymous SNV,512,0 -1.fastq,envelope_glycoprotein T295T,6530,98.38,T295T,envelope_glycoprotein,A885C,A to C,synonymous SNV,432,0 -1.fastq,envelope_glycoprotein H299Q,6542,96.49,H299Q,envelope_glycoprotein,T897A,T to A,nonsynonymous SNV,338,0 -1.fastq,envelope_glycoprotein L300L,6545,97.99,L300L,envelope_glycoprotein,T900A,T to A,synonymous SNV,301,0 -1.fastq,envelope_glycoprotein N301K,6548,2.08,N301K,envelope_glycoprotein,T903A,T to A,nonsynonymous SNV,296,0 -1.fastq,envelope_glycoprotein E302E,6551,100,E302E,envelope_glycoprotein,G906A,G to A,synonymous SNV,238,0 -1.fastq,envelope_glycoprotein S303P,6552,2.64,S303P,envelope_glycoprotein,T907C,T to C,nonsynonymous SNV,229,0 -1.fastq,envelope_glycoprotein V304V,6557,1.63,V304V,envelope_glycoprotein,A912G,A to G,synonymous SNV,125,0 -1.fastq,envelope_glycoprotein E305V,6559,90,E305V,envelope_glycoprotein,A914T,A to T,complex,91,0 -1.fastq,envelope_glycoprotein E305E,6560,100,E305E,envelope_glycoprotein,G915A,G to A,complex,93,0 -1.fastq,envelope_glycoprotein V307M,6564,79.07,V307M,envelope_glycoprotein,G919A,G to A,complex,86,0 -1.fastq,envelope_glycoprotein V307E,6565,90.67,V307E,envelope_glycoprotein,T920A,T to A,complex,84,0 -1.fastq,envelope_glycoprotein V307V,6566,90.54,V307V,envelope_glycoprotein,G921T,G to T,complex,86,0 -1.fastq,envelope_glycoprotein C308C,6569,100,C308C,envelope_glycoprotein,C924T,C to T,synonymous SNV,87,0 -1.fastq,envelope_glycoprotein T309T,6572,93.4,T309T,envelope_glycoprotein,A927T,A to T,synonymous SNV,112,0 -1.fastq,envelope_glycoprotein R310R,6575,5.63,R310R,envelope_glycoprotein,A930G,A to G,synonymous SNV,143,0 -1.fastq,envelope_glycoprotein P311L,6577,93.66,P311L,envelope_glycoprotein,C932T,C to T,nonsynonymous SNV,146,0 -1.fastq,envelope_glycoprotein N312D,6579,2.4,N312D,envelope_glycoprotein,A934G,A to G,complex,167,0 -1.fastq,envelope_glycoprotein N312S,6580,4,N312S,envelope_glycoprotein,A935G,A to G,complex,175,0 -1.fastq,envelope_glycoprotein N313N,6584,95.53,N313N,envelope_glycoprotein,T939C,T to C,synonymous SNV,183,0 -1.fastq,envelope_glycoprotein R316R,6593,97.35,R316R,envelope_glycoprotein,G948A,G to A,synonymous SNV,267,0 -1.fastq,envelope_glycoprotein S318S,6599,97.41,S318S,envelope_glycoprotein,T954C,T to C,synonymous SNV,309,0 -1.fastq,envelope_glycoprotein M319V,6600,2.27,M319V,envelope_glycoprotein,A955G,A to G,complex,309,0 -1.fastq,envelope_glycoprotein M319I,6602,100,M319I,envelope_glycoprotein,G957A,G to A,complex,310,0 -1.fastq,envelope_glycoprotein R320T,6604,97.4,R320T,envelope_glycoprotein,G959C,G to C,complex,311,0 -1.fastq,envelope_glycoprotein R320S,6605,97.41,R320S,envelope_glycoprotein,G960T,G to T,complex,321,0 -1.fastq,envelope_glycoprotein G324G,6617,97.65,G324G,envelope_glycoprotein,A972G,A to G,synonymous SNV,427,0 -1.fastq,envelope_glycoprotein Q325K,6618,97.88,Q325K,envelope_glycoprotein,C973A,C to A,complex,427,0 -1.fastq,envelope_glycoprotein Q325R,6619,98.11,Q325R,envelope_glycoprotein,A974G,A to G,complex,426,0 -1.fastq,envelope_glycoprotein T326A,6621,97.61,T326A,envelope_glycoprotein,A976G,A to G,nonsynonymous SNV,427,0 -1.fastq,envelope_glycoprotein F327F,6626,98.06,F327F,envelope_glycoprotein,C981T,C to T,synonymous SNV,470,0 -1.fastq,envelope_glycoprotein E332D,6641,99.57,E332D,envelope_glycoprotein,A996C,A to C,nonsynonymous SNV,1159,0 -1.fastq,envelope_glycoprotein N336D,6651,99.76,N336D,envelope_glycoprotein,A1006G,A to G,nonsynonymous SNV,1232,0 -1.fastq,envelope_glycoprotein I344L,6675,99.39,I344L,envelope_glycoprotein,A1030C,A to C,nonsynonymous SNV,1144,0 -1.fastq,envelope_glycoprotein T350N,6694,100,T350N,envelope_glycoprotein,C1049A,C to A,nonsynonymous SNV,35,0 -1.fastq,envelope_glycoprotein R351K,6697,100,R351K,envelope_glycoprotein,G1052A,G to A,complex,30,0 -1.fastq,envelope_glycoprotein R351R,6698,100,R351R,envelope_glycoprotein,G1053A,G to A,complex,30,0 -1.fastq,envelope_glycoprotein Q354E,6705,100,Q354E,envelope_glycoprotein,C1060G,C to G,complex,13,0 -1.fastq,envelope_glycoprotein Q354R,6706,100,Q354R,envelope_glycoprotein,A1061G,A to G,complex,13,0 -1.fastq,envelope_glycoprotein R355R,6708,100,R355R,envelope_glycoprotein,A1063C,A to C,synonymous SNV,13,0 -1.fastq,envelope_glycoprotein V356I,6711,100,V356I,envelope_glycoprotein,G1066A,G to A,nonsynonymous SNV,13,0 -1.fastq,envelope_glycoprotein S357G,6714,100,S357G,envelope_glycoprotein,A1069G,A to G,complex,13,0 -1.fastq,envelope_glycoprotein S357T,6715,100,S357T,envelope_glycoprotein,G1070C,G to C,complex,13,0 -1.fastq,envelope_glycoprotein M383T,6793,100,M383T,envelope_glycoprotein,T1148C,T to C,complex,4,0 -1.fastq,envelope_glycoprotein M383I,6794,100,M383I,envelope_glycoprotein,G1149A,G to A,complex,4,0 -1.fastq,envelope_glycoprotein S385S,6800,25,S385S,envelope_glycoprotein,C1155T,C to T,synonymous SNV,4,0 -1.fastq,envelope_glycoprotein N387I,6805,20,N387I,envelope_glycoprotein,A1160T,A to T,nonsynonymous SNV,5,0 -1.fastq,envelope_glycoprotein R389G,6810,20,R389G,envelope_glycoprotein,A1165G,A to G,nonsynonymous SNV,5,0 -1.fastq,envelope_glycoprotein N396H,6831,60,N396H,envelope_glycoprotein,A1186C,A to C,nonsynonymous SNV,5,0 -1.fastq,envelope_glycoprotein S399T,6840,100,S399T,envelope_glycoprotein,T1195A,T to A,complex,3,0 -1.fastq,envelope_glycoprotein S399Y,6841,100,S399Y,envelope_glycoprotein,C1196A,C to A,complex,3,0 -1.fastq,envelope_glycoprotein G403S,6852,100,G403S,envelope_glycoprotein,G1207A,G to A,nonsynonymous SNV,3,0 -1.fastq,envelope_glycoprotein Q423P,6913,99.82,Q423P,envelope_glycoprotein,A1268C,A to C,complex,3389,0 -1.fastq,envelope_glycoprotein Q423Q,6914,100,Q423Q,envelope_glycoprotein,G1269A,G to A,complex,3398,0 -1.fastq,envelope_glycoprotein K425R,6919,100,K425R,envelope_glycoprotein,A1274G,A to G,nonsynonymous SNV,3455,0 -1.fastq,envelope_glycoprotein G435R,6948,99.67,G435R,envelope_glycoprotein,G1303A,G to A,complex,3328,0 -1.fastq,envelope_glycoprotein G435E,6949,100,G435E,envelope_glycoprotein,G1304A,G to A,complex,3338,0 -1.fastq,envelope_glycoprotein G435G,6950,99.7,G435G,envelope_glycoprotein,G1305A,G to A,complex,3338,0 -1.fastq,envelope_glycoprotein Q438K,6957,99.73,Q438K,envelope_glycoprotein,C1312A,C to A,complex,3287,0 -1.fastq,envelope_glycoprotein Q438R,6958,99.72,Q438R,envelope_glycoprotein,A1313G,A to G,complex,3268,0 -1.fastq,envelope_glycoprotein I445I,6980,99.67,I445I,envelope_glycoprotein,T1335C,T to C,synonymous SNV,2734,0 -1.fastq,envelope_glycoprotein N448H,6987,96.39,N448H,envelope_glycoprotein,A1342C,A to C,complex,272,0 -1.fastq,envelope_glycoprotein N448I,6988,96.37,N448I,envelope_glycoprotein,A1343T,A to T,complex,264,0 -1.fastq,envelope_glycoprotein N448K,6989,96.41,N448K,envelope_glycoprotein,C1344A,C to A,complex,257,0 -1.fastq,envelope_glycoprotein I449I,6992,96.36,I449I,envelope_glycoprotein,A1347T,A to T,synonymous SNV,254,0 -1.fastq,envelope_glycoprotein T450R,6994,96.37,T450R,envelope_glycoprotein,C1349G,C to G,nonsynonymous SNV,254,0 -1.fastq,envelope_glycoprotein K452T,7000,95.71,K452T,envelope_glycoprotein,A1355C,A to C,complex,219,0 -1.fastq,envelope_glycoprotein K452N,7001,2.37,K452N,envelope_glycoprotein,A1356C,A to C,complex,217,0 -1.fastq,envelope_glycoprotein N454S,7006,1.52,N454S,envelope_glycoprotein,A1361G,A to G,nonsynonymous SNV,205,0 -1.fastq,envelope_glycoprotein I455I,7010,95.1,I455I,envelope_glycoprotein,C1365T,C to T,synonymous SNV,125,0 -1.fastq,envelope_glycoprotein G457G,7016,82.61,G457G,envelope_glycoprotein,A1371G,A to G,synonymous SNV,50,0 -1.fastq,envelope_glycoprotein L458I,7017,9.76,L458I,envelope_glycoprotein,C1372A,C to A,complex,45,0 -1.fastq,envelope_glycoprotein L458L,7019,69.23,L458L,envelope_glycoprotein,A1374G,A to G,complex,13,0 -1.fastq,envelope_glycoprotein L459L,7022,100,L459L,envelope_glycoprotein,C1377A,C to A,synonymous SNV,3,0 -1.fastq,envelope_glycoprotein T461I,7027,100,T461I,envelope_glycoprotein,C1382T,C to T,nonsynonymous SNV,2,0 -1.fastq,envelope_glycoprotein G474D,7066,10,G474D,envelope_glycoprotein,G1421A,G to A,nonsynonymous SNV,13,0 -1.fastq,envelope_glycoprotein T475I,7069,81.82,T475I,envelope_glycoprotein,C1424T,C to T,complex,14,0 -1.fastq,envelope_glycoprotein T475T,7070,76.92,T475T,envelope_glycoprotein,A1425T,A to T,complex,16,0 -1.fastq,envelope_glycoprotein V477V,7076,99.95,V477V,envelope_glycoprotein,A1431C,A to C,synonymous SNV,3679,0 -1.fastq,envelope_glycoprotein R486K,7102,99.95,R486K,envelope_glycoprotein,G1457A,G to A,nonsynonymous SNV,4399,0 -1.fastq,envelope_glycoprotein Y494Y,7127,99.95,Y494Y,envelope_glycoprotein,C1482T,C to T,synonymous SNV,4362,0 -1.fastq,envelope_glycoprotein V498V,7139,99.95,V498V,envelope_glycoprotein,G1494A,G to A,synonymous SNV,3793,0 -1.fastq,envelope_glycoprotein E500Q,7143,99.97,E500Q,envelope_glycoprotein,G1498C,G to C,nonsynonymous SNV,3815,0 -1.fastq,envelope_glycoprotein K502E,7149,99.66,K502E,envelope_glycoprotein,A1504G,A to G,complex,3874,0 -1.fastq,envelope_glycoprotein K502K,7151,99.71,K502K,envelope_glycoprotein,G1506A,G to A,complex,3849,0 -1.fastq,envelope_glycoprotein V506I,7161,99.97,V506I,envelope_glycoprotein,G1516A,G to A,nonsynonymous SNV,3849,0 -1.fastq,envelope_glycoprotein P508P,7169,100,P508P,envelope_glycoprotein,T1524C,T to C,synonymous SNV,3186,0 -1.fastq,envelope_glycoprotein S510T,7173,100,S510T,envelope_glycoprotein,T1528A,T to A,nonsynonymous SNV,3130,0 -1.fastq,envelope_glycoprotein S511A,7176,100,S511A,envelope_glycoprotein,T1531G,T to G,nonsynonymous SNV,3136,0 -1.fastq,envelope_glycoprotein R512K,7180,99.52,R512K,envelope_glycoprotein,G1535A,G to A,complex,3183,0 -1.fastq,envelope_glycoprotein R512R,7181,99.07,R512R,envelope_glycoprotein,A1536G,A to G,complex,3155,0 -1.fastq,envelope_glycoprotein R513R,7184,52.87,R513R,envelope_glycoprotein,G1539A,G to A,synonymous SNV,3490,0 -1.fastq,envelope_glycoprotein E517Q,7194,99.8,E517Q,envelope_glycoprotein,G1549C,G to C,nonsynonymous SNV,4657,0 -1.fastq,envelope_glycoprotein V523L,7212,99.76,V523L,envelope_glycoprotein,G1567T,G to T,complex,4686,0 -1.fastq,envelope_glycoprotein V523V,7214,99.81,V523V,envelope_glycoprotein,G1569A,G to A,complex,4696,0 -1.fastq,envelope_glycoprotein A543A,7274,99.98,A543A,envelope_glycoprotein,A1629G,A to G,synonymous SNV,4706,0 -1.fastq,envelope_glycoprotein I545V,7278,99.76,I545V,envelope_glycoprotein,A1633G,A to G,nonsynonymous SNV,4684,0 -1.fastq,envelope_glycoprotein Q562Q,7331,31.12,Q562Q,envelope_glycoprotein,A1686G,A to G,synonymous SNV,4479,0 -1.fastq,envelope_glycoprotein L565L,7338,30.85,L565L,envelope_glycoprotein,T1693C,T to C,synonymous SNV,4241,0 -1.fastq,envelope_glycoprotein R567K,7345,100,R567K,envelope_glycoprotein,G1700A,G to A,nonsynonymous SNV,3886,0 -1.fastq,envelope_glycoprotein I569I,7352,100,I569I,envelope_glycoprotein,A1707T,A to T,synonymous SNV,3620,0 -1.fastq,envelope_glycoprotein Q573Q,7364,99.88,Q573Q,envelope_glycoprotein,G1719A,G to A,synonymous SNV,3238,0 -1.fastq,envelope_glycoprotein T579T,7382,99.85,T579T,envelope_glycoprotein,G1737A,G to A,synonymous SNV,2649,0 -1.fastq,envelope_glycoprotein I583I,7394,99.91,I583I,envelope_glycoprotein,T1749C,T to C,synonymous SNV,2334,0 -1.fastq,envelope_glycoprotein K584K,7397,99.82,K584K,envelope_glycoprotein,A1752G,A to G,synonymous SNV,2290,0 -1.fastq,envelope_glycoprotein T588A,7407,99.95,T588A,envelope_glycoprotein,A1762G,A to G,nonsynonymous SNV,2040,0 -1.fastq,envelope_glycoprotein L591L,7418,99.73,L591L,envelope_glycoprotein,G1773A,G to A,synonymous SNV,1508,0 -1.fastq,envelope_glycoprotein I593V,7422,99.86,I593V,envelope_glycoprotein,A1777G,A to G,complex,1454,0 -1.fastq,envelope_glycoprotein I593M,7424,99.93,I593M,envelope_glycoprotein,C1779G,C to G,complex,1459,0 -1.fastq,envelope_glycoprotein K598Q,7437,99.69,K598Q,envelope_glycoprotein,A1792C,A to C,complex,978,0 -1.fastq,envelope_glycoprotein K598N,7439,99.69,K598N,envelope_glycoprotein,G1794T,G to T,complex,974,0 -1.fastq,envelope_glycoprotein L603L,7454,98.99,L603L,envelope_glycoprotein,A1809G,A to G,synonymous SNV,498,0 -1.fastq,envelope_glycoprotein G607G,7466,98.31,G607G,envelope_glycoprotein,C1821T,C to T,synonymous SNV,177,0 -1.fastq,envelope_glycoprotein K611K,7478,55.56,K611K,envelope_glycoprotein,A1833G,A to G,synonymous SNV,9,0 -1.fastq,envelope_glycoprotein I613I,7484,50,I613I,envelope_glycoprotein,C1839T,C to T,synonymous SNV,8,0 -1.fastq,envelope_glycoprotein N617D,7494,42.86,N617D,envelope_glycoprotein,A1849G,A to G,complex,7,0 -1.fastq,envelope_glycoprotein N617T,7495,57.14,N617T,envelope_glycoprotein,A1850C,A to C,complex,7,0 -1.fastq,envelope_glycoprotein Y619H,7500,100,Y619H,envelope_glycoprotein,T1855C,T to C,complex,5,0 -1.fastq,envelope_glycoprotein Y619S,7501,100,Y619S,envelope_glycoprotein,A1856C,A to C,complex,5,0 -1.fastq,envelope_glycoprotein E622A,7510,100,E622A,envelope_glycoprotein,A1865C,A to C,complex,4,0 -1.fastq,envelope_glycoprotein E622D,7511,100,E622D,envelope_glycoprotein,A1866T,A to T,complex,5,0 -1.fastq,envelope_glycoprotein K635N,7550,100,K635N,envelope_glycoprotein,A1905C,A to C,nonsynonymous SNV,2,0 -1.fastq,envelope_glycoprotein S646S,7583,100,S646S,envelope_glycoprotein,T1938C,T to C,synonymous SNV,2,0 -1.fastq,envelope_glycoprotein T649S,7590,3.23,T649S,envelope_glycoprotein,A1945T,A to T,nonsynonymous SNV,31,0 -1.fastq,envelope_glycoprotein T650A,7593,96.77,T650A,envelope_glycoprotein,A1948G,A to G,complex,31,0 -1.fastq,envelope_glycoprotein T650S,7594,100,T650S,envelope_glycoprotein,C1949G,C to G,complex,31,0 -1.fastq,envelope_glycoprotein T651S,7596,96.67,T651S,envelope_glycoprotein,A1951T,A to T,complex,31,0 -1.fastq,envelope_glycoprotein T651I,7597,96.67,T651I,envelope_glycoprotein,C1952T,C to T,complex,30,0 -1.fastq,envelope_glycoprotein K654N,7607,99.36,K654N,envelope_glycoprotein,G1962C,G to C,nonsynonymous SNV,157,0 -1.fastq,envelope_glycoprotein L655L,7610,99.43,L655L,envelope_glycoprotein,G1965A,G to A,synonymous SNV,182,0 -1.fastq,envelope_glycoprotein D658N,7617,99.6,D658N,envelope_glycoprotein,G1972A,G to A,complex,248,0 -1.fastq,envelope_glycoprotein D658E,7619,100,D658E,envelope_glycoprotein,C1974A,C to A,complex,250,0 -1.fastq,envelope_glycoprotein T661N,7627,100,T661N,envelope_glycoprotein,C1982A,C to A,nonsynonymous SNV,346,0 -1.fastq,envelope_glycoprotein Q663Q,7634,99.75,Q663Q,envelope_glycoprotein,G1989A,G to A,synonymous SNV,408,0 -1.fastq,envelope_glycoprotein N665K,7640,100,N665K,envelope_glycoprotein,T1995G,T to G,nonsynonymous SNV,408,0 -1.fastq,envelope_glycoprotein K668Q,7647,99.75,K668Q,envelope_glycoprotein,A2002C,A to C,nonsynonymous SNV,408,0 -1.fastq,envelope_glycoprotein D669E,7652,99.51,D669E,envelope_glycoprotein,C2007A,C to A,nonsynonymous SNV,409,0 -1.fastq,envelope_glycoprotein L671L,7656,100,L671L,envelope_glycoprotein,C2011T,C to T,complex,408,0 -1.fastq,envelope_glycoprotein L671L,7658,99.51,L671L,envelope_glycoprotein,A2013G,A to G,complex,409,0 -1.fastq,envelope_glycoprotein A672E,7660,99.28,A672E,envelope_glycoprotein,C2015A,C to A,nonsynonymous SNV,409,0 -1.fastq,envelope_glycoprotein D674D,7667,99.79,D674D,envelope_glycoprotein,C2022T,C to T,synonymous SNV,477,0 -1.fastq,envelope_glycoprotein N677D,7674,99.8,N677D,envelope_glycoprotein,A2029G,A to G,complex,515,0 -1.fastq,envelope_glycoprotein N677T,7675,99.8,N677T,envelope_glycoprotein,A2030C,A to C,complex,517,0 -1.fastq,envelope_glycoprotein N677K,7676,93.6,N677K,envelope_glycoprotein,C2031A,C to A,complex,546,0 -1.fastq,envelope_glycoprotein N678S,7678,100,N678S,envelope_glycoprotein,A2033G,A to G,nonsynonymous SNV,547,0 -1.fastq,envelope_glycoprotein L679L,7680,99.8,L679L,envelope_glycoprotein,C2035T,C to T,complex,501,0 -1.fastq,envelope_glycoprotein L679L,7682,99.82,L679L,envelope_glycoprotein,A2037G,A to G,complex,559,0 -1.fastq,envelope_glycoprotein N681S,7687,8.47,N681S,envelope_glycoprotein,A2042G,A to G,nonsynonymous SNV,2811,0 -1.fastq,envelope_glycoprotein N684D,7695,99.97,N684D,envelope_glycoprotein,A2050G,A to G,complex,2867,0 -1.fastq,envelope_glycoprotein N684N,7697,99.93,N684N,envelope_glycoprotein,T2052C,T to C,complex,2882,0 -1.fastq,envelope_glycoprotein F695F,7730,99.98,F695F,envelope_glycoprotein,C2085T,C to T,synonymous SNV,4628,0 -1.fastq,envelope_glycoprotein I699V,7740,99.96,I699V,envelope_glycoprotein,A2095G,A to G,nonsynonymous SNV,4508,0 -1.fastq,envelope_glycoprotein L702L,7751,99.93,L702L,envelope_glycoprotein,G2106A,G to A,synonymous SNV,4241,0 -1.fastq,envelope_glycoprotein I708V,7767,99.92,I708V,envelope_glycoprotein,A2122G,A to G,nonsynonymous SNV,3751,0 -1.fastq,envelope_glycoprotein A710V,7774,99.82,A710V,envelope_glycoprotein,C2129T,C to T,complex,2740,0 -1.fastq,envelope_glycoprotein A710A,7775,99.34,A710A,envelope_glycoprotein,T2130G,T to G,complex,2775,0 -1.fastq,envelope_glycoprotein V711V,7778,98.53,V711V,envelope_glycoprotein,G2133A,G to A,synonymous SNV,2749,0 -1.fastq,envelope_glycoprotein I712L,7779,99.93,I712L,envelope_glycoprotein,A2134C,A to C,complex,2770,0 -1.fastq,envelope_glycoprotein I712I,7781,99.96,I712I,envelope_glycoprotein,A2136T,A to T,complex,2787,0 -1.fastq,envelope_glycoprotein S713S,7784,99.96,S713S,envelope_glycoprotein,C2139T,C to T,synonymous SNV,2865,0 -1.fastq,envelope_glycoprotein V715V,7790,100,V715V,envelope_glycoprotein,G2145A,G to A,synonymous SNV,3255,0 -1.fastq,envelope_glycoprotein Y722Y,7811,22.86,Y722Y,envelope_glycoprotein,C2166T,C to T,synonymous SNV,2986,0 -1.fastq,envelope_glycoprotein P724P,7817,99.88,P724P,envelope_glycoprotein,T2172A,T to A,synonymous SNV,1656,0 -1.fastq,envelope_glycoprotein L725L,7818,99.82,L725L,envelope_glycoprotein,T2173C,T to C,complex,1651,0 -1.fastq,envelope_glycoprotein L725L,7820,15.04,L725L,envelope_glycoprotein,G2175A,G to A,complex,1652,0 -1.fastq,envelope_glycoprotein S726S,7823,84.62,S726S,envelope_glycoprotein,G2178A,G to A,synonymous SNV,1638,0 -1.fastq,envelope_glycoprotein F727F,7826,99.94,F727F,envelope_glycoprotein,C2181T,C to T,synonymous SNV,1613,0 -1.fastq,envelope_glycoprotein L730R,7834,99.93,L730R,envelope_glycoprotein,T2189G,T to G,complex,1463,0 -1.fastq,envelope_glycoprotein L730L,7835,99.93,L730L,envelope_glycoprotein,T2190C,T to C,complex,1477,0 -1.fastq,envelope_glycoprotein I731L,7836,99.86,I731L,envelope_glycoprotein,A2191C,A to C,nonsynonymous SNV,1474,0 -1.fastq,envelope_glycoprotein N733D,7842,99.79,N733D,envelope_glycoprotein,A2197G,A to G,complex,1432,0 -1.fastq,envelope_glycoprotein N733T,7843,99.79,N733T,envelope_glycoprotein,A2198C,A to C,complex,1421,0 -1.fastq,envelope_glycoprotein P734Q,7846,99.93,P734Q,envelope_glycoprotein,C2201A,C to A,nonsynonymous SNV,1431,0 -1.fastq,envelope_glycoprotein G738D,7858,99.92,G738D,envelope_glycoprotein,G2213A,G to A,nonsynonymous SNV,1283,0 -1.fastq,envelope_glycoprotein L740P,7864,99.91,L740P,envelope_glycoprotein,T2219C,T to C,nonsynonymous SNV,1085,0 -1.fastq,envelope_glycoprotein G741E,7867,99.9,G741E,envelope_glycoprotein,G2222A,G to A,nonsynonymous SNV,1016,0 -1.fastq,envelope_glycoprotein G742E,7870,99.9,G742E,envelope_glycoprotein,G2225A,G to A,nonsynonymous SNV,1012,0 -1.fastq,envelope_glycoprotein I743T,7873,99.9,I743T,envelope_glycoprotein,T2228C,T to C,nonsynonymous SNV,1021,0 -1.fastq,envelope_glycoprotein E745G,7879,99.67,E745G,envelope_glycoprotein,A2234G,A to G,nonsynonymous SNV,925,0 -1.fastq,envelope_glycoprotein Q750R,7894,99.87,Q750R,envelope_glycoprotein,A2249G,A to G,nonsynonymous SNV,770,0 -1.fastq,envelope_glycoprotein S754R,7907,100,S754R,envelope_glycoprotein,C2262A,C to A,nonsynonymous SNV,156,0 -1.fastq,envelope_glycoprotein S755S,7910,10.53,S755S,envelope_glycoprotein,G2265C,G to C,synonymous SNV,24,0 -1.fastq,envelope_glycoprotein I756T,7912,5.26,I756T,envelope_glycoprotein,T2267C,T to C,nonsynonymous SNV,138,0 -1.fastq,envelope_glycoprotein R757R,7916,1.55,R757R,envelope_glycoprotein,A2271C,A to C,synonymous SNV,136,0 -1.fastq,envelope_glycoprotein S760G,7923,94.85,S760G,envelope_glycoprotein,A2278G,A to G,complex,97,0 -1.fastq,envelope_glycoprotein S760N,7924,100,S760N,envelope_glycoprotein,G2279A,G to A,complex,90,0 -1.fastq,envelope_glycoprotein S760S,7925,98.92,S760S,envelope_glycoprotein,C2280T,C to T,complex,93,0 -1.fastq,envelope_glycoprotein G761G,7928,1.08,G761G,envelope_glycoprotein,A2283C,A to C,synonymous SNV,94,0 -1.fastq,envelope_glycoprotein A764A,7937,3.85,A764A,envelope_glycoprotein,A2292G,A to G,synonymous SNV,26,0 -1.fastq,envelope_glycoprotein A766V,7942,66.67,A766V,envelope_glycoprotein,C2297T,C to T,nonsynonymous SNV,3,0 -1.fastq,envelope_glycoprotein D769D,7952,66.67,D769D,envelope_glycoprotein,T2307C,T to C,synonymous SNV,3,0 -1.fastq,envelope_glycoprotein R780R,7985,66.67,R780R,envelope_glycoprotein,A2340C,A to C,synonymous SNV,3,0 -1.fastq,envelope_glycoprotein V829I,8130,100,V829I,envelope_glycoprotein,G2485A,G to A,nonsynonymous SNV,2,0 -1.fastq,envelope_glycoprotein D830N,8133,100,D830N,envelope_glycoprotein,G2488A,G to A,complex,2,0 -1.fastq,envelope_glycoprotein D830G,8134,100,D830G,envelope_glycoprotein,A2489G,A to G,complex,2,0 -1.fastq,envelope_glycoprotein G840A,8164,100,G840A,envelope_glycoprotein,G2519C,G to C,nonsynonymous SNV,2,0 -1.fastq,envelope_glycoprotein E841E,8168,100,E841E,envelope_glycoprotein,A2523G,A to G,synonymous SNV,2,0 -1.fastq,envelope_glycoprotein R845R,8180,100,R845R,envelope_glycoprotein,A2535G,A to G,synonymous SNV,2,0 -1.fastq,nef_protein A52P,8400,100,A52P,nef_protein,G154C,G to C,nonsynonymous SNV,110,0 -1.fastq,nef_protein A53D,8404,100,A53D,nef_protein,C158A,C to A,nonsynonymous SNV,164,0 -1.fastq,nef_protein Y54C,8407,100,Y54C,nef_protein,A161G,A to G,nonsynonymous SNV,203,0 -1.fastq,nef_protein R56W,8412,100,R56W,nef_protein,A166T,A to T,nonsynonymous SNV,295,0 -1.fastq,nef_protein P57L,8416,100,P57L,nef_protein,C170T,C to T,nonsynonymous SNV,351,0 -1.fastq,nef_protein V59A,8422,100,V59A,nef_protein,T176C,T to C,nonsynonymous SNV,421,0 -1.fastq,nef_protein E62E,8432,71.43,E62E,nef_protein,G186A,G to A,synonymous SNV,12,0 -1.fastq,nef_protein E65E,8441,100,E65E,nef_protein,A195G,A to G,synonymous SNV,709,0 -1.fastq,nef_protein V66V,8444,99.32,V66V,nef_protein,A198G,A to G,synonymous SNV,739,0 -1.fastq,nef_protein G67G,8447,99.61,G67G,nef_protein,C201T,C to T,synonymous SNV,771,0 -1.fastq,nef_protein P72P,8462,99.97,P72P,nef_protein,A216T,A to T,synonymous SNV,3522,0 -1.fastq,nef_protein T80T,8486,99.89,T80T,nef_protein,T240A,T to A,synonymous SNV,3604,0 -1.fastq,nef_protein Y81Y,8489,99.89,Y81Y,nef_protein,T243C,T to C,synonymous SNV,3611,0 -1.fastq,nef_protein G83A,8494,99.94,G83A,nef_protein,G248C,G to C,nonsynonymous SNV,3621,0 -1.fastq,nef_protein A84A,8498,99.97,A84A,nef_protein,A252G,A to G,synonymous SNV,3661,0 -1.fastq,nef_protein L87L,8507,99.9,L87L,nef_protein,C261T,C to T,synonymous SNV,3957,0 -1.fastq,nef_protein D98E,8540,100,D98E,nef_protein,T294A,T to A,nonsynonymous SNV,3955,0 -1.fastq,nef_protein L100L,8544,99.97,L100L,nef_protein,T298C,T to C,synonymous SNV,3957,0 -1.fastq,nef_protein S103S,8555,99.85,S103S,nef_protein,T309C,T to C,synonymous SNV,3284,0 -1.fastq,nef_protein K104Q,8556,99.91,K104Q,nef_protein,A310C,A to C,nonsynonymous SNV,3276,0 -1.fastq,nef_protein K105K,8561,99.88,K105K,nef_protein,A315G,A to G,synonymous SNV,3365,0 -1.fastq,nef_protein R106R,8564,99.85,R106R,nef_protein,G318A,G to A,synonymous SNV,3366,0 -1.fastq,nef_protein E108D,8570,99.92,E108D,nef_protein,A324T,A to T,nonsynonymous SNV,3963,0 -1.fastq,nef_protein L112L,8580,99.93,L112L,nef_protein,T334C,T to C,synonymous SNV,4130,0 -1.fastq,nef_protein V114V,8588,100,V114V,nef_protein,G342C,G to C,synonymous SNV,3766,0 -1.fastq,nef_protein Y115Y,8591,99.92,Y115Y,nef_protein,T345C,T to C,synonymous SNV,3742,0 -1.fastq,nef_protein N116H,8592,99.97,N116H,nef_protein,A346C,A to C,nonsynonymous SNV,3748,0 -1.fastq,nef_protein F120Y,8605,99.88,F120Y,nef_protein,T359A,T to A,nonsynonymous SNV,4138,0 -1.fastq,nef_protein F121F,8609,99.95,F121F,nef_protein,T363C,T to C,synonymous SNV,4094,0 -1.fastq,nef_protein Q125Q,8621,65.47,Q125Q,nef_protein,A375G,A to G,synonymous SNV,4273,0 -1.fastq,nef_protein P129P,8633,99.87,P129P,nef_protein,G387A,G to A,synonymous SNV,3900,0 -1.fastq,nef_protein G130G,8636,99.9,G130G,nef_protein,A390G,A to G,synonymous SNV,3856,0 -1.fastq,nef_protein G132G,8642,32.56,G132G,nef_protein,G396A,G to A,synonymous SNV,3779,0 -1.fastq,nef_protein T138T,8660,99.87,T138T,nef_protein,C414T,C to T,synonymous SNV,3081,0 -1.fastq,nef_protein G140G,8666,99.92,G140G,nef_protein,A420G,A to G,synonymous SNV,2640,0 -1.fastq,nef_protein L142F,8670,99.76,L142F,nef_protein,C424T,C to T,complex,2516,0 -1.fastq,nef_protein L142R,8671,99.96,L142R,nef_protein,T425G,T to G,complex,2542,0 -1.fastq,nef_protein L145L,8679,99.96,L145L,nef_protein,T433C,T to C,synonymous SNV,2439,0 -1.fastq,nef_protein V146V,8684,100,V146V,nef_protein,G438A,G to A,synonymous SNV,2350,0 -1.fastq,nef_protein D149D,8693,93.1,D149D,nef_protein,C447T,C to T,synonymous SNV,102,0 -1.fastq,nef_protein R151R,8699,84.62,R151R,nef_protein,G453A,G to A,synonymous SNV,49,0 -1.fastq,nef_protein G159R,8721,100,G159R,nef_protein,G475A,G to A,nonsynonymous SNV,700,0 -1.fastq,nef_protein E160E,8726,100,E160E,nef_protein,A480G,A to G,synonymous SNV,654,0 -1.fastq,nef_protein N162S,8731,100,N162S,nef_protein,A485G,A to G,nonsynonymous SNV,579,0 -1.fastq,nef_protein C163S,8733,100,C163S,nef_protein,T487A,T to A,nonsynonymous SNV,577,0 -1.fastq,nef_protein L165L,8739,100,L165L,nef_protein,C493T,C to T,synonymous SNV,499,0 -1.fastq,nef_protein P167P,8747,93.63,P167P,nef_protein,C501T,C to T,synonymous SNV,325,0 -1.fastq,nef_protein I168V,8748,93.67,I168V,nef_protein,A502G,A to G,complex,316,0 -1.fastq,nef_protein I168T,8749,100,I168T,nef_protein,T503C,T to C,complex,298,0 -1.fastq,nef_protein G172G,8762,100,G172G,nef_protein,A516G,A to G,synonymous SNV,96,0 -1.fastq,gag_protein Q473X,1626,75,Q473X,gag_protein,C1417T,C to T,stopgain,4,0 -1.fastq,gag_protein E477delinsELX,1638,84.62,E477delinsELX,gag_protein,1429_1430insAACTGT,1 to T,stopgain,39,0 -1.fastq,pol_protein Y561X,3178,100,Y561X,pol_protein,C1683G,C to G,stopgain,7123,0 -1.fastq,pol_protein Q1000X,4493,25,Q1000X,pol_protein,C2998T,C to T,stopgain,4,0 -1.fastq,tat_protein Q66X,5424,25,Q66X,tat_protein,C196T,C to T,stopgain,4,0 -1.fastq,vpu_protein C46X,5605,99.71,C46X,vpu_protein,T138A,T to A,stopgain,422,0 -1.fastq,envelope_glycoprotein K452X,6999,95.75,K452X,envelope_glycoprotein,A1354T,A to T,stopgain,221,0 -1.fastq,envelope_glycoprotein S510X,7174,59.93,S510X,envelope_glycoprotein,C1529A,C to A,stopgain,3141,0 -2.fastq,gag_protein R9S,236,100,R9S,gag_protein,G27C,G to C,nonsynonymous SNV,3999,1 -2.fastq,gag_protein E11G,241,99.9,E11G,gag_protein,A32G,A to G,nonsynonymous SNV,3999,1 -2.fastq,gag_protein Q12E,243,100,Q12E,gag_protein,C34G,C to G,nonsynonymous SNV,4001,1 -2.fastq,gag_protein E14D,251,99.16,E14D,gag_protein,A42T,A to T,nonsynonymous SNV,4305,1 -2.fastq,gag_protein R15K,253,41.7,R15K,gag_protein,G44A,G to A,complex,4310,1 -2.fastq,gag_protein R15R,254,99.77,R15R,gag_protein,A45G,A to G,complex,4311,1 -2.fastq,gag_protein R20R,267,91.95,R20R,gag_protein,A58C,A to C,synonymous SNV,4877,1 -2.fastq,gag_protein R22R,273,99.88,R22R,gag_protein,C64A,C to A,synonymous SNV,4989,1 -2.fastq,gag_protein G24G,281,4.96,G24G,gag_protein,G72A,G to A,synonymous SNV,5367,1 -2.fastq,gag_protein Q28K,291,99.94,Q28K,gag_protein,C82A,C to A,complex,5184,1 -2.fastq,gag_protein Q28R,292,23.7,Q28R,gag_protein,A83G,A to G,complex,5218,1 -2.fastq,gag_protein R30R,299,99.82,R30R,gag_protein,G90A,G to A,synonymous SNV,5001,1 -2.fastq,gag_protein L31L,300,98.86,L31L,gag_protein,C91T,C to T,synonymous SNV,5007,1 -2.fastq,gag_protein K32K,305,3.98,K32K,gag_protein,A96G,A to G,synonymous SNV,5059,1 -2.fastq,gag_protein H33H,308,99.7,H33H,gag_protein,C99T,C to T,synonymous SNV,5043,1 -2.fastq,gag_protein L34I,309,99.94,L34I,gag_protein,C100A,C to A,nonsynonymous SNV,5044,1 -2.fastq,gag_protein L41L,330,99.51,L41L,gag_protein,C121T,C to T,complex,5070,1 -2.fastq,gag_protein L41L,332,99.8,L41L,gag_protein,G123A,G to A,complex,5063,1 -2.fastq,gag_protein R43R,336,99.34,R43R,gag_protein,A127C,A to C,synonymous SNV,5046,1 -2.fastq,gag_protein F44F,341,99.44,F44F,gag_protein,T132C,T to C,synonymous SNV,5029,1 -2.fastq,gag_protein L46V,345,99.98,L46V,gag_protein,C136G,C to G,complex,5009,1 -2.fastq,gag_protein L46L,347,4.26,L46L,gag_protein,T138C,T to C,complex,5012,1 -2.fastq,gag_protein N47N,350,99.8,N47N,gag_protein,C141T,C to T,synonymous SNV,4991,1 -2.fastq,gag_protein G49S,354,21.46,G49S,gag_protein,G145A,G to A,nonsynonymous SNV,5007,1 -2.fastq,gag_protein L50L,359,96.37,L50L,gag_protein,T150G,T to G,synonymous SNV,4974,1 -2.fastq,gag_protein S54T,369,3.89,S54T,gag_protein,T160A,T to A,nonsynonymous SNV,4894,1 -2.fastq,gag_protein G56G,377,97.4,G56G,gag_protein,C168T,C to T,synonymous SNV,4166,1 -2.fastq,gag_protein K58Q,381,1.3,K58Q,gag_protein,A172C,A to C,complex,4147,1 -2.fastq,gag_protein K58R,382,99.81,K58R,gag_protein,A173G,A to G,complex,4126,1 -2.fastq,gag_protein K58K,383,4.28,K58K,gag_protein,A174G,A to G,complex,4121,1 -2.fastq,gag_protein Q59K,384,13.67,Q59K,gag_protein,C175A,C to A,complex,4119,1 -2.fastq,gag_protein Q59Q,386,99.76,Q59Q,gag_protein,A177G,A to G,complex,4101,1 -2.fastq,gag_protein L61L,392,3.66,L61L,gag_protein,G183A,G to A,synonymous SNV,4026,1 -2.fastq,gag_protein D62N,393,99.57,D62N,gag_protein,G184A,G to A,complex,3467,1 -2.fastq,gag_protein D62G,394,99.55,D62G,gag_protein,A185G,A to G,complex,3465,1 -2.fastq,gag_protein D62E,395,99.94,D62E,gag_protein,C186A,C to A,complex,3458,1 -2.fastq,gag_protein I64L,399,99.83,I64L,gag_protein,A190C,A to C,nonsynonymous SNV,3448,1 -2.fastq,gag_protein Q65H,404,1.3,Q65H,gag_protein,A195T,A to T,nonsynonymous SNV,3467,1 -2.fastq,gag_protein A67S,408,99.91,A67S,gag_protein,G199T,G to T,complex,3413,1 -2.fastq,gag_protein A67A,410,99.82,A67A,gag_protein,T201C,T to C,complex,3399,1 -2.fastq,gag_protein I68L,411,99.79,I68L,gag_protein,A202C,A to C,nonsynonymous SNV,3400,1 -2.fastq,gag_protein T72S,423,99.97,T72S,gag_protein,A214T,A to T,nonsynonymous SNV,3330,1 -2.fastq,gag_protein R76K,436,99.32,R76K,gag_protein,G227A,G to A,complex,3107,1 -2.fastq,gag_protein R76R,437,19.19,R76R,gag_protein,A228G,A to G,complex,3103,1 -2.fastq,gag_protein F79Y,445,100,F79Y,gag_protein,T236A,T to A,nonsynonymous SNV,2729,1 -2.fastq,gag_protein N80N,449,98.78,N80N,gag_protein,T240C,T to C,synonymous SNV,2721,1 -2.fastq,gag_protein V82I,453,18.65,V82I,gag_protein,G244A,G to A,complex,2700,1 -2.fastq,gag_protein V82V,455,12.22,V82V,gag_protein,A246G,A to G,complex,2672,1 -2.fastq,gag_protein A83A,458,99.16,A83A,gag_protein,A249C,A to C,synonymous SNV,2527,1 -2.fastq,gag_protein T84T,461,99.96,T84T,gag_protein,T252C,T to C,synonymous SNV,2484,1 -2.fastq,gag_protein V88V,473,50.07,V88V,gag_protein,A264G,A to G,synonymous SNV,2026,1 -2.fastq,gag_protein E90Q,477,99.89,E90Q,gag_protein,G268C,G to C,nonsynonymous SNV,1876,1 -2.fastq,gag_protein K91R,481,99.42,K91R,gag_protein,A272G,A to G,nonsynonymous SNV,1732,1 -2.fastq,gag_protein E93D,488,99.56,E93D,gag_protein,G279T,G to T,nonsynonymous SNV,1587,1 -2.fastq,gag_protein V94I,489,99.62,V94I,gag_protein,G280A,G to A,nonsynonymous SNV,1575,1 -2.fastq,gag_protein R95R,492,99.94,R95R,gag_protein,C283A,C to A,complex,1574,1 -2.fastq,gag_protein R95Q,493,53.31,R95Q,gag_protein,G284A,G to A,complex,1574,1 -2.fastq,gag_protein E99E,506,3.28,E99E,gag_protein,A297G,A to G,synonymous SNV,1440,1 -2.fastq,gag_protein A100A,509,99.16,A100A,gag_protein,C300T,C to T,synonymous SNV,1209,1 -2.fastq,gag_protein L101L,510,98.91,L101L,gag_protein,T301C,T to C,synonymous SNV,1202,1 -2.fastq,gag_protein K103R,517,4.73,K103R,gag_protein,A308G,A to G,nonsynonymous SNV,1147,1 -2.fastq,gag_protein Y130Y,599,99.47,Y130Y,gag_protein,T390C,T to C,synonymous SNV,942,1 -2.fastq,gag_protein P131P,602,96.11,P131P,gag_protein,T393C,T to C,synonymous SNV,957,1 -2.fastq,gag_protein V133V,608,88.82,V133V,gag_protein,A399G,A to G,synonymous SNV,1020,1 -2.fastq,gag_protein N135N,614,97.37,N135N,gag_protein,T405C,T to C,synonymous SNV,1068,1 -2.fastq,gag_protein L136L,617,1.22,L136L,gag_protein,C408T,C to T,synonymous SNV,3206,1 -2.fastq,gag_protein Q137Q,620,4.6,Q137Q,gag_protein,G411A,G to A,synonymous SNV,3354,1 -2.fastq,gag_protein H142H,635,98.85,H142H,gag_protein,C426T,C to T,synonymous SNV,4098,1 -2.fastq,gag_protein L145M,642,99.98,L145M,gag_protein,C433A,C to A,complex,4140,1 -2.fastq,gag_protein L145L,644,99.98,L145L,gag_protein,G435A,G to A,complex,4158,1 -2.fastq,gag_protein L150L,659,99.91,L150L,gag_protein,G450A,G to A,synonymous SNV,4657,1 -2.fastq,gag_protein V154V,671,95.38,V154V,gag_protein,A462G,A to G,synonymous SNV,4717,1 -2.fastq,gag_protein I157V,678,99.98,I157V,gag_protein,A469G,A to G,complex,4652,1 -2.fastq,gag_protein I157M,680,55.1,I157M,gag_protein,A471G,A to G,complex,4702,1 -2.fastq,gag_protein E159E,686,1.54,E159E,gag_protein,G477A,G to A,synonymous SNV,4832,1 -2.fastq,gag_protein K160K,689,99.34,K160K,gag_protein,A480G,A to G,synonymous SNV,4525,1 -2.fastq,gag_protein G161A,691,99.98,G161A,gag_protein,G482C,G to C,complex,4529,1 -2.fastq,gag_protein G161G,692,1.98,G161G,gag_protein,T483C,T to C,complex,4760,1 -2.fastq,gag_protein N163S,697,99.9,N163S,gag_protein,A488G,A to G,nonsynonymous SNV,4785,1 -2.fastq,gag_protein E165E,704,99.51,E165E,gag_protein,G495A,G to A,synonymous SNV,4922,1 -2.fastq,gag_protein T171S,720,99.88,T171S,gag_protein,A511T,A to T,nonsynonymous SNV,5061,1 -2.fastq,gag_protein S174A,729,99.98,S174A,gag_protein,T520G,T to G,nonsynonymous SNV,5123,1 -2.fastq,gag_protein D181D,752,2.31,D181D,gag_protein,T543C,T to C,synonymous SNV,5413,1 -2.fastq,gag_protein T184T,761,1.25,T184T,gag_protein,C552T,C to T,synonymous SNV,5393,1 -2.fastq,gag_protein L186L,765,96.67,L186L,gag_protein,T556C,T to C,synonymous SNV,5123,1 -2.fastq,gag_protein N187N,770,92.45,N187N,gag_protein,T561C,T to C,synonymous SNV,5148,1 -2.fastq,gag_protein Q193Q,788,99.55,Q193Q,gag_protein,A579G,A to G,synonymous SNV,5178,1 -2.fastq,gag_protein A195A,794,2.24,A195A,gag_protein,C585T,C to T,synonymous SNV,5409,1 -2.fastq,gag_protein Q197Q,800,2.41,Q197Q,gag_protein,A591G,A to G,synonymous SNV,5445,1 -2.fastq,gag_protein L199L,806,2.29,L199L,gag_protein,A597G,A to G,synonymous SNV,5452,1 -2.fastq,gag_protein D201E,812,99.92,D201E,gag_protein,T603G,T to G,nonsynonymous SNV,5247,1 -2.fastq,gag_protein T202T,815,1.86,T202T,gag_protein,C606T,C to T,synonymous SNV,5405,1 -2.fastq,gag_protein E205E,824,1.51,E205E,gag_protein,G615A,G to A,synonymous SNV,5425,1 -2.fastq,gag_protein E206E,827,99.77,E206E,gag_protein,G618A,G to A,synonymous SNV,5241,1 -2.fastq,gag_protein D211D,842,1.51,D211D,gag_protein,T633C,T to C,synonymous SNV,5395,1 -2.fastq,gag_protein L213L,846,98.51,L213L,gag_protein,T637C,T to C,complex,5119,1 -2.fastq,gag_protein L213L,848,98.39,L213L,gag_protein,A639G,A to G,complex,5112,1 -2.fastq,gag_protein V216V,857,96.79,V216V,gag_protein,A648G,A to G,synonymous SNV,5304,1 -2.fastq,gag_protein Q225Q,884,95.16,Q225Q,gag_protein,A675G,A to G,synonymous SNV,5327,1 -2.fastq,gag_protein E228E,893,3.26,E228E,gag_protein,A684G,A to G,synonymous SNV,5448,1 -2.fastq,gag_protein D233D,908,18.66,D233D,gag_protein,C699T,C to T,synonymous SNV,7966,1 -2.fastq,gag_protein A235A,914,23.04,A235A,gag_protein,A705T,A to T,synonymous SNV,7964,1 -2.fastq,gag_protein T237T,920,2.32,T237T,gag_protein,T711C,T to C,synonymous SNV,7962,1 -2.fastq,gag_protein N240T,928,99.87,N240T,gag_protein,A719C,A to C,nonsynonymous SNV,7811,1 -2.fastq,gag_protein E243E,938,4.23,E243E,gag_protein,A729G,A to G,synonymous SNV,7924,1 -2.fastq,gag_protein Q244Q,941,20.03,Q244Q,gag_protein,A732G,A to G,synonymous SNV,7785,1 -2.fastq,gag_protein V245I,942,99.91,V245I,gag_protein,G733A,G to A,nonsynonymous SNV,7664,1 -2.fastq,gag_protein A246G,946,100,A246G,gag_protein,C737G,C to G,nonsynonymous SNV,7768,1 -2.fastq,gag_protein G250S,957,99.94,G250S,gag_protein,G748A,G to A,complex,7152,1 -2.fastq,gag_protein G250D,958,99.94,G250D,gag_protein,G749A,G to A,complex,7147,1 -2.fastq,gag_protein G250G,959,99.52,G250G,gag_protein,C750T,C to T,complex,7165,1 -2.fastq,gag_protein N251N,962,99.8,N251N,gag_protein,C753T,C to T,synonymous SNV,7218,1 -2.fastq,gag_protein A253P,966,98.35,A253P,gag_protein,G757C,G to C,nonsynonymous SNV,7411,1 -2.fastq,gag_protein V256V,977,99.85,V256V,gag_protein,G768A,G to A,synonymous SNV,7962,1 -2.fastq,gag_protein D258E,983,99.96,D258E,gag_protein,C774A,C to A,nonsynonymous SNV,7956,1 -2.fastq,gag_protein I259I,986,1.95,I259I,gag_protein,C777A,C to A,synonymous SNV,7996,1 -2.fastq,gag_protein L266L,1005,99.75,L266L,gag_protein,T796C,T to C,synonymous SNV,7516,1 -2.fastq,gag_protein G267G,1010,99.64,G267G,gag_protein,G801A,G to A,synonymous SNV,7518,1 -2.fastq,gag_protein L268L,1011,99.36,L268L,gag_protein,C802T,C to T,complex,7535,1 -2.fastq,gag_protein L268L,1013,8.37,L268L,gag_protein,A804G,A to G,complex,7980,1 -2.fastq,gag_protein R273R,1028,32.9,R273R,gag_protein,A819G,A to G,synonymous SNV,7795,1 -2.fastq,gag_protein P277P,1040,99.77,P277P,gag_protein,T831C,T to C,synonymous SNV,6981,1 -2.fastq,gag_protein V278I,1041,99.87,V278I,gag_protein,G832A,G to A,complex,6979,1 -2.fastq,gag_protein V278A,1042,99.93,V278A,gag_protein,T833C,T to C,complex,6978,1 -2.fastq,gag_protein V278V,1043,99.45,V278V,gag_protein,T834C,T to C,complex,6985,1 -2.fastq,gag_protein I280I,1049,1.84,I280I,gag_protein,T840C,T to C,synonymous SNV,7984,1 -2.fastq,gag_protein L281L,1050,99.77,L281L,gag_protein,T841C,T to C,synonymous SNV,7969,1 -2.fastq,gag_protein D282D,1055,2.89,D282D,gag_protein,C846T,C to T,synonymous SNV,7992,1 -2.fastq,gag_protein R284K,1060,99.51,R284K,gag_protein,G851A,G to A,nonsynonymous SNV,7972,1 -2.fastq,gag_protein G286G,1067,99.68,G286G,gag_protein,G858A,G to A,synonymous SNV,7965,1 -2.fastq,gag_protein F291F,1082,2.24,F291F,gag_protein,T873C,T to C,synonymous SNV,7968,1 -2.fastq,gag_protein D296D,1097,97.57,D296D,gag_protein,T888C,T to C,synonymous SNV,5387,1 -2.fastq,gag_protein R297R,1098,99.76,R297R,gag_protein,C889A,C to A,synonymous SNV,5408,1 -2.fastq,gag_protein F299Y,1105,99.98,F299Y,gag_protein,T896A,T to A,nonsynonymous SNV,5924,1 -2.fastq,gag_protein L302L,1113,99.88,L302L,gag_protein,T904C,T to C,complex,5622,1 -2.fastq,gag_protein L302F,1115,84.77,L302F,gag_protein,A906C,A to C,complex,5645,1 -2.fastq,gag_protein A304A,1121,98.59,A304A,gag_protein,T912C,T to C,synonymous SNV,5760,1 -2.fastq,gag_protein E305E,1124,99.01,E305E,gag_protein,A915G,A to G,synonymous SNV,5791,1 -2.fastq,gag_protein A307A,1130,22.02,A307A,gag_protein,T921C,T to C,synonymous SNV,5921,1 -2.fastq,gag_protein T308S,1131,99.97,T308S,gag_protein,A922T,A to T,nonsynonymous SNV,5903,1 -2.fastq,gag_protein Q309Q,1136,99.33,Q309Q,gag_protein,A927G,A to G,synonymous SNV,5946,1 -2.fastq,gag_protein E310E,1139,98.69,E310E,gag_protein,A930G,A to G,synonymous SNV,5961,1 -2.fastq,gag_protein D317E,1160,99.97,D317E,gag_protein,C951A,C to A,nonsynonymous SNV,7621,1 -2.fastq,gag_protein L320L,1169,96.54,L320L,gag_protein,A960G,A to G,synonymous SNV,7834,1 -2.fastq,gag_protein A324A,1181,99.81,A324A,gag_protein,G972A,G to A,synonymous SNV,7756,1 -2.fastq,gag_protein N325N,1184,11.66,N325N,gag_protein,C975T,C to T,synonymous SNV,7982,1 -2.fastq,gag_protein K329K,1196,1.41,K329K,gag_protein,G987A,G to A,synonymous SNV,7887,1 -2.fastq,gag_protein T330T,1199,99.12,T330T,gag_protein,C990T,C to T,synonymous SNV,6564,1 -2.fastq,gag_protein L332L,1203,3.46,L332L,gag_protein,T994C,T to C,synonymous SNV,6844,1 -2.fastq,gag_protein R333K,1207,99.91,R333K,gag_protein,G998A,G to A,nonsynonymous SNV,6609,1 -2.fastq,gag_protein L335L,1214,85.33,L335L,gag_protein,A1005G,A to G,synonymous SNV,6622,1 -2.fastq,gag_protein G336G,1217,2.58,G336G,gag_protein,A1008G,A to G,synonymous SNV,6645,1 -2.fastq,gag_protein G338A,1222,99.9,G338A,gag_protein,G1013C,G to C,complex,6086,1 -2.fastq,gag_protein G338G,1223,99.84,G338G,gag_protein,G1014A,G to A,complex,6085,1 -2.fastq,gag_protein S340T,1227,99.95,S340T,gag_protein,T1018A,T to A,nonsynonymous SNV,6139,1 -2.fastq,gag_protein L341L,1230,98.24,L341L,gag_protein,T1021C,T to C,synonymous SNV,6152,1 -2.fastq,gag_protein E342E,1235,89.26,E342E,gag_protein,G1026A,G to A,synonymous SNV,6306,1 -2.fastq,gag_protein G350G,1259,3.34,G350G,gag_protein,A1050G,A to G,synonymous SNV,7378,1 -2.fastq,gag_protein H356H,1277,96.91,H356H,gag_protein,C1068T,C to T,synonymous SNV,6813,1 -2.fastq,gag_protein K357K,1280,1.98,K357K,gag_protein,A1071G,A to G,synonymous SNV,6782,1 -2.fastq,gag_protein R359R,1286,99.04,R359R,gag_protein,G1077A,G to A,synonymous SNV,6130,1 -2.fastq,gag_protein E363E,1298,50.93,E363E,gag_protein,G1089A,G to A,synonymous SNV,378,1 -2.fastq,gag_protein A364A,1301,88.65,A364A,gag_protein,C1092A,C to A,synonymous SNV,371,1 -2.fastq,gag_protein S366S,1307,12.24,S366S,gag_protein,T1098C,T to C,synonymous SNV,49,1 -2.fastq,gag_protein Q367Q,1310,20,Q367Q,gag_protein,A1101G,A to G,synonymous SNV,5,1 -2.fastq,gag_protein N369K,1316,1.94,N369K,gag_protein,C1107A,C to A,nonsynonymous SNV,104,1 -2.fastq,gag_protein L374M,1329,100,L374M,gag_protein,C1120A,C to A,nonsynonymous SNV,4,1 -2.fastq,gag_protein S378G,1341,99.06,S378G,gag_protein,A1132G,A to G,nonsynonymous SNV,107,1 -2.fastq,gag_protein F380F,1349,50,F380F,gag_protein,C1140T,C to T,synonymous SNV,24,1 -2.fastq,gag_protein K381K,1352,26.67,K381K,gag_protein,A1143G,A to G,synonymous SNV,16,1 -2.fastq,gag_protein G382S,1353,80,G382S,gag_protein,G1144A,G to A,complex,16,1 -2.fastq,gag_protein G382D,1354,100,G382D,gag_protein,G1145A,G to A,complex,13,1 -2.fastq,gag_protein P383H,1357,100,P383H,gag_protein,C1148A,C to A,complex,13,1 -2.fastq,gag_protein P383P,1358,100,P383P,gag_protein,T1149A,T to A,complex,13,1 -2.fastq,gag_protein R385K,1363,93.33,R385K,gag_protein,G1154A,G to A,nonsynonymous SNV,32,1 -2.fastq,gag_protein A386T,1365,100,A386T,gag_protein,G1156A,G to A,nonsynonymous SNV,33,1 -2.fastq,gag_protein V387V,1370,97.33,V387V,gag_protein,G1161T,G to T,synonymous SNV,89,1 -2.fastq,gag_protein K388K,1373,89.64,K388K,gag_protein,A1164G,A to G,synonymous SNV,238,1 -2.fastq,gag_protein N391N,1382,99.61,N391N,gag_protein,C1173T,C to T,synonymous SNV,5947,1 -2.fastq,gag_protein G393G,1388,1.41,G393G,gag_protein,C1179T,C to T,synonymous SNV,6472,1 -2.fastq,gag_protein K394K,1391,99.91,K394K,gag_protein,G1182A,G to A,synonymous SNV,6487,1 -2.fastq,gag_protein G396G,1397,4.01,G396G,gag_protein,G1188A,G to A,synonymous SNV,6854,1 -2.fastq,gag_protein A399A,1406,65.31,A399A,gag_protein,T1197C,T to C,synonymous SNV,6916,1 -2.fastq,gag_protein R400K,1408,99.99,R400K,gag_protein,G1199A,G to A,complex,6926,1 -2.fastq,gag_protein R400R,1409,1.4,R400R,gag_protein,A1200G,A to G,complex,6952,1 -2.fastq,gag_protein C402C,1415,99.44,C402C,gag_protein,T1206C,T to C,synonymous SNV,7019,1 -2.fastq,gag_protein K403R,1417,99.7,K403R,gag_protein,A1208G,A to G,complex,7031,1 -2.fastq,gag_protein K403K,1418,99.6,K403K,gag_protein,G1209A,G to A,complex,7034,1 -2.fastq,gag_protein R406R,1427,5.46,R406R,gag_protein,G1218A,G to A,synonymous SNV,8005,1 -2.fastq,gag_protein K408K,1433,99.72,K408K,gag_protein,A1224G,A to G,synonymous SNV,7985,1 -2.fastq,gag_protein G414G,1451,6.9,G414G,gag_protein,A1242C,A to C,synonymous SNV,7992,1 -2.fastq,gag_protein K415R,1453,97.4,K415R,gag_protein,A1244G,A to G,complex,7940,1 -2.fastq,gag_protein K415K,1454,1.2,K415K,gag_protein,G1245A,G to A,complex,7967,1 -2.fastq,gag_protein G417G,1460,94.51,G417G,gag_protein,A1251G,A to G,synonymous SNV,7922,1 -2.fastq,gag_protein D422D,1475,89.79,D422D,gag_protein,T1266C,T to C,synonymous SNV,7643,1 -2.fastq,gag_protein E425E,1484,95.57,E425E,gag_protein,A1275G,A to G,synonymous SNV,7394,1 -2.fastq,gag_protein R426R,1487,99.55,R426R,gag_protein,G1278A,G to A,synonymous SNV,7382,1 -2.fastq,pol_protein P9S,1520,1.03,P9S,pol_protein,C25T,C to T,complex,7543,1 -2.fastq,pol_protein F16L,1541,2.29,F16L,pol_protein,T46C,T to C,nonsynonymous SNV,6658,1 -2.fastq,pol_protein P17S,1544,71.37,P17S,pol_protein,C49T,C to T,nonsynonymous SNV,6484,1 -2.fastq,gag_protein S448N,1552,6.19,S448N,gag_protein,G1343A,G to A,nonsynonymous SNV,6197,1 -2.fastq,pol_protein A21T,1556,99.66,A21T,pol_protein,G61A,G to A,nonsynonymous SNV,5858,1 -2.fastq,pol_protein T23A,1562,93.14,T23A,pol_protein,A67G,A to G,nonsynonymous SNV,1215,1 -2.fastq,gag_protein A454V,1570,4.94,A454V,gag_protein,C1361T,C to T,nonsynonymous SNV,257,1 -2.fastq,pol_protein T26P,1571,90.91,T26P,pol_protein,A76C,A to C,nonsynonymous SNV,95,1 -2.fastq,pol_protein R29G,1580,97.12,R29G,pol_protein,A85G,A to G,nonsynonymous SNV,290,1 -2.fastq,gag_protein P469Q,1615,100,P469Q,gag_protein,C1406A,C to A,nonsynonymous SNV,5,1 -2.fastq,gag_protein E472G,1624,100,E472G,gag_protein,A1415G,A to G,nonsynonymous SNV,7,1 -2.fastq,pol_protein A44T,1625,42.86,A44T,pol_protein,G130A,G to A,nonsynonymous SNV,7,1 -2.fastq,gag_protein R476K,1636,100,R476K,gag_protein,G1427A,G to A,nonsynonymous SNV,13,1 -2.fastq,pol_protein C52R,1649,88.89,C52R,pol_protein,T154C,T to C,complex,79,1 -2.fastq,gag_protein K483R,1657,91.05,K483R,gag_protein,A1448G,A to G,nonsynonymous SNV,8006,1 -2.fastq,gag_protein N488S,1672,11.17,N488S,gag_protein,A1463G,A to G,nonsynonymous SNV,8021,1 -2.fastq,gag_protein L491S,1681,98.62,L491S,gag_protein,T1472C,T to C,nonsynonymous SNV,8025,1 -2.fastq,pol_protein K66K,1693,99.76,K66K,pol_protein,A198G,A to G,synonymous SNV,7897,1 -2.fastq,pol_protein V67I,1694,99.81,V67I,pol_protein,G199A,G to A,nonsynonymous SNV,7901,1 -2.fastq,pol_protein G69G,1702,99.97,G69G,pol_protein,C207G,C to G,synonymous SNV,7950,1 -2.fastq,pol_protein I71L,1706,99.88,I71L,pol_protein,A211C,A to C,nonsynonymous SNV,7977,1 -2.fastq,pol_protein K72K,1711,1.18,K72K,pol_protein,G216A,G to A,synonymous SNV,8015,1 -2.fastq,pol_protein A74A,1717,8.89,A74A,pol_protein,T222C,T to C,synonymous SNV,7971,1 -2.fastq,pol_protein L75L,1720,99.94,L75L,pol_protein,C225A,C to A,synonymous SNV,7724,1 -2.fastq,pol_protein L76L,1721,99.79,L76L,pol_protein,C226T,C to T,synonymous SNV,7723,1 -2.fastq,pol_protein L85I,1748,51.24,L85I,pol_protein,T253A,T to A,nonsynonymous SNV,7744,1 -2.fastq,pol_protein E87D,1756,99.79,E87D,pol_protein,A261C,A to C,nonsynonymous SNV,7412,1 -2.fastq,pol_protein I88M,1759,99.24,I88M,pol_protein,A264G,A to G,nonsynonymous SNV,7364,1 -2.fastq,pol_protein P91P,1768,3.41,P91P,pol_protein,A273T,A to T,synonymous SNV,7506,1 -2.fastq,pol_protein K93R,1773,98.15,K93R,pol_protein,A278G,A to G,nonsynonymous SNV,7023,1 -2.fastq,pol_protein G100G,1795,51.99,G100G,pol_protein,A300G,A to G,synonymous SNV,6763,1 -2.fastq,pol_protein V108V,1819,3.42,V108V,pol_protein,A324G,A to G,synonymous SNV,2459,1 -2.fastq,pol_protein R109K,1821,3.13,R109K,pol_protein,G326A,G to A,nonsynonymous SNV,2437,1 -2.fastq,pol_protein Q110Q,1825,99.22,Q110Q,pol_protein,A330G,A to G,synonymous SNV,2338,1 -2.fastq,pol_protein E112D,1831,99.69,E112D,pol_protein,G336T,G to T,nonsynonymous SNV,1964,1 -2.fastq,pol_protein D113H,1832,97.95,D113H,pol_protein,G337C,G to C,complex,1960,1 -2.fastq,pol_protein D113E,1834,100,D113E,pol_protein,C339G,C to G,complex,1959,1 -2.fastq,pol_protein T115P,1838,99.9,T115P,pol_protein,A343C,A to C,complex,1992,1 -2.fastq,pol_protein T115T,1840,99.45,T115T,pol_protein,T345C,T to C,complex,1996,1 -2.fastq,pol_protein I116V,1841,2.15,I116V,pol_protein,A346G,A to G,nonsynonymous SNV,2329,1 -2.fastq,pol_protein I118I,1849,90.65,I118I,pol_protein,T354C,T to C,synonymous SNV,2363,1 -2.fastq,pol_protein K121Q,1856,100,K121Q,pol_protein,A361C,A to C,complex,2338,1 -2.fastq,pol_protein K121N,1858,97.56,K121N,pol_protein,A363T,A to T,complex,2339,1 -2.fastq,pol_protein K122Q,1859,1.41,K122Q,pol_protein,A364C,A to C,complex,2339,1 -2.fastq,pol_protein K122T,1860,9.81,K122T,pol_protein,A365C,A to C,complex,2339,1 -2.fastq,pol_protein K122K,1861,99.53,K122K,pol_protein,G366A,G to A,complex,2340,1 -2.fastq,pol_protein A123A,1864,6.14,A123A,pol_protein,T369G,T to G,synonymous SNV,2677,1 -2.fastq,pol_protein I124V,1865,1.94,I124V,pol_protein,A370G,A to G,nonsynonymous SNV,2730,1 -2.fastq,pol_protein A126T,1871,99.96,A126T,pol_protein,G376A,G to A,nonsynonymous SNV,2716,1 -2.fastq,pol_protein V127V,1876,1.65,V127V,pol_protein,A381G,A to G,synonymous SNV,2857,1 -2.fastq,pol_protein L128L,1877,3.98,L128L,pol_protein,T382C,T to C,synonymous SNV,2863,1 -2.fastq,pol_protein V129V,1882,99.36,V129V,pol_protein,G387A,G to A,synonymous SNV,2820,1 -2.fastq,pol_protein R139R,1912,99.85,R139R,pol_protein,G417A,G to A,synonymous SNV,2683,1 -2.fastq,pol_protein N140N,1915,99.62,N140N,pol_protein,T420C,T to C,synonymous SNV,2681,1 -2.fastq,pol_protein M141L,1916,100,M141L,pol_protein,A421C,A to C,nonsynonymous SNV,2681,1 -2.fastq,pol_protein T143T,1924,100,T143T,pol_protein,A429T,A to T,synonymous SNV,2736,1 -2.fastq,pol_protein Q144Q,1927,2.76,Q144Q,pol_protein,G432A,G to A,synonymous SNV,2755,1 -2.fastq,pol_protein L145I,1928,99.93,L145I,pol_protein,C433A,C to A,nonsynonymous SNV,2757,1 -2.fastq,pol_protein G146G,1933,99.87,G146G,pol_protein,A438T,A to T,synonymous SNV,2777,1 -2.fastq,pol_protein T148T,1939,99.96,T148T,pol_protein,A444T,A to T,synonymous SNV,2769,1 -2.fastq,pol_protein L149L,1940,98.23,L149L,pol_protein,C445T,C to T,synonymous SNV,2770,1 -2.fastq,pol_protein P155P,1960,100,P155P,pol_protein,C465T,C to T,synonymous SNV,3409,1 -2.fastq,pol_protein E157E,1966,2.09,E157E,pol_protein,A471G,A to G,synonymous SNV,3550,1 -2.fastq,pol_protein K164R,1986,2.22,K164R,pol_protein,A491G,A to G,nonsynonymous SNV,3557,1 -2.fastq,pol_protein G169G,2002,99.97,G169G,pol_protein,C507G,C to G,synonymous SNV,3439,1 -2.fastq,pol_protein K171K,2008,1.42,K171K,pol_protein,G513A,G to A,synonymous SNV,3532,1 -2.fastq,pol_protein L177L,2026,3.67,L177L,pol_protein,G531A,G to A,synonymous SNV,3539,1 -2.fastq,pol_protein E180E,2035,1.35,E180E,pol_protein,A540G,A to G,synonymous SNV,3562,1 -2.fastq,pol_protein T186A,2051,95.15,T186A,pol_protein,A556G,A to G,complex,2988,1 -2.fastq,pol_protein T186I,2052,99.9,T186I,pol_protein,C557T,C to T,complex,2964,1 -2.fastq,pol_protein A187E,2055,99.97,A187E,pol_protein,C560A,C to A,nonsynonymous SNV,2964,1 -2.fastq,pol_protein I188I,2059,93.31,I188I,pol_protein,T564C,T to C,synonymous SNV,3000,1 -2.fastq,pol_protein E190K,2063,99.73,E190K,pol_protein,G568A,G to A,complex,2972,1 -2.fastq,pol_protein E190A,2064,99.93,E190A,pol_protein,A569C,A to C,complex,2979,1 -2.fastq,pol_protein T199S,2090,100,T199S,pol_protein,A595T,A to T,nonsynonymous SNV,3521,1 -2.fastq,pol_protein E204E,2107,2.73,E204E,pol_protein,A612G,A to G,synonymous SNV,3703,1 -2.fastq,pol_protein N205N,2110,2.11,N205N,pol_protein,T615C,T to C,synonymous SNV,3692,1 -2.fastq,pol_protein Y207Y,2116,98.95,Y207Y,pol_protein,T621C,T to C,synonymous SNV,3425,1 -2.fastq,pol_protein N208N,2119,99.53,N208N,pol_protein,C624T,C to T,synonymous SNV,3428,1 -2.fastq,pol_protein T209T,2122,3.15,T209T,pol_protein,T627C,T to C,synonymous SNV,3569,1 -2.fastq,pol_protein V211I,2126,98.64,V211I,pol_protein,G631A,G to A,complex,3542,1 -2.fastq,pol_protein V211V,2128,1.57,V211V,pol_protein,A633C,A to C,complex,3645,1 -2.fastq,pol_protein K215K,2140,99.73,K215K,pol_protein,A645G,A to G,synonymous SNV,3396,1 -2.fastq,pol_protein K216K,2143,99.79,K216K,pol_protein,G648A,G to A,synonymous SNV,3378,1 -2.fastq,pol_protein K217K,2146,52.41,K217K,pol_protein,G651A,G to A,synonymous SNV,3473,1 -2.fastq,pol_protein D218D,2149,2.21,D218D,pol_protein,C654T,C to T,synonymous SNV,3667,1 -2.fastq,pol_protein K221K,2158,99.89,K221K,pol_protein,G663A,G to A,synonymous SNV,3619,1 -2.fastq,pol_protein D227D,2176,4.24,D227D,pol_protein,T681C,T to C,synonymous SNV,3798,1 -2.fastq,pol_protein R229R,2182,98.16,R229R,pol_protein,G687A,G to A,synonymous SNV,3696,1 -2.fastq,pol_protein L231L,2188,99.84,L231L,pol_protein,C693T,C to T,synonymous SNV,3675,1 -2.fastq,pol_protein N232N,2191,10.81,N232N,pol_protein,T696C,T to C,synonymous SNV,3745,1 -2.fastq,pol_protein K233K,2194,82.04,K233K,pol_protein,A699G,A to G,synonymous SNV,3687,1 -2.fastq,pol_protein F238F,2209,99.7,F238F,pol_protein,T714C,T to C,synonymous SNV,3723,1 -2.fastq,pol_protein H247H,2236,99.37,H247H,pol_protein,C741T,C to T,synonymous SNV,3540,1 -2.fastq,pol_protein P248P,2239,99.77,P248P,pol_protein,A744C,A to C,synonymous SNV,3533,1 -2.fastq,pol_protein L251L,2246,99.58,L251L,pol_protein,T751C,T to C,complex,3581,1 -2.fastq,pol_protein L251F,2248,30.05,L251F,pol_protein,A753C,A to C,complex,3652,1 -2.fastq,pol_protein K253Q,2252,1.06,K253Q,pol_protein,A757C,A to C,nonsynonymous SNV,3787,1 -2.fastq,pol_protein K254K,2257,98.98,K254K,pol_protein,A762G,A to G,synonymous SNV,3733,1 -2.fastq,pol_protein V257V,2266,99.73,V257V,pol_protein,G771A,G to A,synonymous SNV,3753,1 -2.fastq,pol_protein L260L,2275,45.09,L260L,pol_protein,G780A,G to A,synonymous SNV,3829,1 -2.fastq,pol_protein G263G,2284,99.89,G263G,pol_protein,G789T,G to T,synonymous SNV,3669,1 -2.fastq,pol_protein S268S,2299,1.45,S268S,pol_protein,A804G,A to G,synonymous SNV,3850,1 -2.fastq,pol_protein V269V,2302,99.94,V269V,pol_protein,G807T,G to T,synonymous SNV,3501,1 -2.fastq,pol_protein P270P,2305,97.49,P270P,pol_protein,T810C,T to C,synonymous SNV,3509,1 -2.fastq,pol_protein E273K,2312,99.92,E273K,pol_protein,G817A,G to A,nonsynonymous SNV,3671,1 -2.fastq,pol_protein G274D,2316,99.92,G274D,pol_protein,G821A,G to A,nonsynonymous SNV,3673,1 -2.fastq,pol_protein F275F,2320,5.46,F275F,pol_protein,C825T,C to T,synonymous SNV,3849,1 -2.fastq,pol_protein K277K,2326,11.16,K277K,pol_protein,G831A,G to A,synonymous SNV,3897,1 -2.fastq,pol_protein T279T,2332,4.91,T279T,pol_protein,T837A,T to A,synonymous SNV,3940,1 -2.fastq,pol_protein F281F,2338,99.29,F281F,pol_protein,C843T,C to T,synonymous SNV,3794,1 -2.fastq,pol_protein I286V,2351,9.92,I286V,pol_protein,A856G,A to G,nonsynonymous SNV,3892,1 -2.fastq,pol_protein E289E,2362,96.14,E289E,pol_protein,A867G,A to G,synonymous SNV,3819,1 -2.fastq,pol_protein I293V,2372,99.9,I293V,pol_protein,A877G,A to G,nonsynonymous SNV,3838,1 -2.fastq,pol_protein R294R,2377,8.47,R294R,pol_protein,A882G,A to G,synonymous SNV,3943,1 -2.fastq,pol_protein Q296Q,2383,98.09,Q296Q,pol_protein,A888G,A to G,synonymous SNV,3717,1 -2.fastq,pol_protein Y297Y,2386,99.62,Y297Y,pol_protein,T891C,T to C,synonymous SNV,3722,1 -2.fastq,pol_protein A309S,2420,4.7,A309S,pol_protein,G925T,G to T,nonsynonymous SNV,3856,1 -2.fastq,pol_protein Q312Q,2431,99.71,Q312Q,pol_protein,G936A,G to A,synonymous SNV,3482,1 -2.fastq,pol_protein S313G,2432,75.93,S313G,pol_protein,A937G,A to G,complex,3489,1 -2.fastq,pol_protein S313T,2433,75.24,S313T,pol_protein,G938C,G to C,complex,3495,1 -2.fastq,pol_protein S313S,2434,17.06,S313S,pol_protein,T939C,T to C,complex,3654,1 -2.fastq,pol_protein K317K,2446,71.1,K317K,pol_protein,A951G,A to G,synonymous SNV,3739,1 -2.fastq,pol_protein P321P,2458,99.85,P321P,pol_protein,A963C,A to C,synonymous SNV,3602,1 -2.fastq,pol_protein R323R,2464,99.88,R323R,pol_protein,G969A,G to A,synonymous SNV,3290,1 -2.fastq,pol_protein I324K,2466,99.97,I324K,pol_protein,T971A,T to A,nonsynonymous SNV,3289,1 -2.fastq,pol_protein K325Q,2468,100,K325Q,pol_protein,A973C,A to C,nonsynonymous SNV,3293,1 -2.fastq,pol_protein N326N,2473,99.43,N326N,pol_protein,C978T,C to T,synonymous SNV,3335,1 -2.fastq,pol_protein V330V,2485,2.18,V330V,pol_protein,T990G,T to G,synonymous SNV,3816,1 -2.fastq,pol_protein I331I,2488,8.69,I331I,pol_protein,C993T,C to T,synonymous SNV,3807,1 -2.fastq,pol_protein Y332Y,2491,6.42,Y332Y,pol_protein,T996C,T to C,synonymous SNV,3833,1 -2.fastq,pol_protein D337D,2506,99.46,D337D,pol_protein,C1011T,C to T,synonymous SNV,3715,1 -2.fastq,pol_protein D343D,2524,7.7,D343D,pol_protein,C1029T,C to T,synonymous SNV,3773,1 -2.fastq,pol_protein D347G,2535,99.56,D347G,pol_protein,A1040G,A to G,complex,3166,1 -2.fastq,pol_protein D347E,2536,99.62,D347E,pol_protein,T1041G,T to G,complex,3165,1 -2.fastq,pol_protein Q348Q,2539,98.9,Q348Q,pol_protein,A1044G,A to G,synonymous SNV,3182,1 -2.fastq,pol_protein A351T,2546,99.78,A351T,pol_protein,G1051A,G to A,nonsynonymous SNV,3223,1 -2.fastq,pol_protein E354E,2557,1.83,E354E,pol_protein,G1062A,G to A,synonymous SNV,3178,1 -2.fastq,pol_protein E355E,2560,98.31,E355E,pol_protein,G1065A,G to A,synonymous SNV,2670,1 -2.fastq,pol_protein L356L,2561,99.77,L356L,pol_protein,T1066C,T to C,complex,2659,1 -2.fastq,pol_protein L356L,2563,95.64,L356L,pol_protein,A1068G,A to G,complex,2662,1 -2.fastq,pol_protein E358K,2567,99.65,E358K,pol_protein,G1072A,G to A,nonsynonymous SNV,2661,1 -2.fastq,pol_protein H359H,2572,91.57,H359H,pol_protein,T1077C,T to C,synonymous SNV,2653,1 -2.fastq,pol_protein L360L,2573,99.74,L360L,pol_protein,T1078C,T to C,complex,2651,1 -2.fastq,pol_protein L360L,2575,93.97,L360L,pol_protein,A1080G,A to G,complex,2691,1 -2.fastq,pol_protein L361L,2578,1.07,L361L,pol_protein,G1083A,G to A,synonymous SNV,3380,1 -2.fastq,pol_protein T366T,2593,6.92,T366T,pol_protein,C1098T,C to T,synonymous SNV,3595,1 -2.fastq,pol_protein K370K,2605,99.63,K370K,pol_protein,G1110A,G to A,synonymous SNV,3532,1 -2.fastq,pol_protein H372H,2611,1.84,H372H,pol_protein,T1116C,T to C,synonymous SNV,3653,1 -2.fastq,pol_protein F378F,2629,97.93,F378F,pol_protein,T1134C,T to C,synonymous SNV,3485,1 -2.fastq,pol_protein G382G,2641,78.31,G382G,pol_protein,G1146T,G to T,synonymous SNV,3565,1 -2.fastq,pol_protein E384E,2647,99.69,E384E,pol_protein,G1152A,G to A,synonymous SNV,3537,1 -2.fastq,pol_protein L385L,2650,2.45,L385L,pol_protein,C1155A,C to A,synonymous SNV,3614,1 -2.fastq,pol_protein V392V,2671,2.76,V392V,pol_protein,A1176T,A to T,synonymous SNV,3582,1 -2.fastq,pol_protein Q396E,2681,100,Q396E,pol_protein,C1186G,C to G,complex,3336,1 -2.fastq,pol_protein Q396L,2682,99.61,Q396L,pol_protein,A1187T,A to T,complex,3336,1 -2.fastq,pol_protein K400K,2695,2.84,K400K,pol_protein,G1200A,G to A,synonymous SNV,3627,1 -2.fastq,pol_protein D401D,2698,99.66,D401D,pol_protein,T1203C,T to C,synonymous SNV,3529,1 -2.fastq,pol_protein D407D,2716,1.03,D407D,pol_protein,T1221C,T to C,synonymous SNV,3588,1 -2.fastq,pol_protein G413G,2734,1.39,G413G,pol_protein,A1239T,A to T,synonymous SNV,3460,1 -2.fastq,pol_protein L415L,2738,99.53,L415L,pol_protein,T1243C,T to C,complex,3188,1 -2.fastq,pol_protein L415L,2740,93.34,L415L,pol_protein,A1245G,A to G,complex,3182,1 -2.fastq,pol_protein N416N,2743,99.56,N416N,pol_protein,C1248T,C to T,synonymous SNV,3200,1 -2.fastq,pol_protein Q420Q,2755,98.56,Q420Q,pol_protein,A1260G,A to G,synonymous SNV,3270,1 -2.fastq,pol_protein Y422Y,2761,99.64,Y422Y,pol_protein,C1266T,C to T,synonymous SNV,3042,1 -2.fastq,pol_protein P423A,2762,99.97,P423A,pol_protein,C1267G,C to G,nonsynonymous SNV,3041,1 -2.fastq,pol_protein G424G,2767,1.74,G424G,pol_protein,G1272A,G to A,synonymous SNV,3112,1 -2.fastq,pol_protein R426K,2772,99.93,R426K,pol_protein,G1277A,G to A,nonsynonymous SNV,2982,1 -2.fastq,pol_protein R428K,2778,99.48,R428K,pol_protein,G1283A,G to A,complex,2726,1 -2.fastq,pol_protein R428R,2779,98.53,R428R,pol_protein,A1284G,A to G,complex,2724,1 -2.fastq,pol_protein Q429Q,2782,16.19,Q429Q,pol_protein,G1287A,G to A,synonymous SNV,2753,1 -2.fastq,pol_protein L430L,2783,85.86,L430L,pol_protein,C1288T,C to T,complex,2748,1 -2.fastq,pol_protein L430L,2785,99.85,L430L,pol_protein,G1290A,G to A,complex,2752,1 -2.fastq,pol_protein R435R,2800,7.09,R435R,pol_protein,A1305G,A to G,synonymous SNV,3389,1 -2.fastq,pol_protein G436G,2803,2.74,G436G,pol_protein,A1308G,A to G,synonymous SNV,3324,1 -2.fastq,pol_protein A437T,2804,99.48,A437T,pol_protein,G1309A,G to A,nonsynonymous SNV,3278,1 -2.fastq,pol_protein A439T,2810,7.02,A439T,pol_protein,G1315A,G to A,nonsynonymous SNV,3401,1 -2.fastq,pol_protein L440L,2815,19.39,L440L,pol_protein,A1320G,A to G,synonymous SNV,3350,1 -2.fastq,pol_protein D442E,2821,99.93,D442E,pol_protein,C1326A,C to A,nonsynonymous SNV,3012,1 -2.fastq,pol_protein I443V,2822,99.83,I443V,pol_protein,A1327G,A to G,complex,3012,1 -2.fastq,pol_protein I443M,2824,2.09,I443M,pol_protein,A1329G,A to G,complex,3022,1 -2.fastq,pol_protein V444I,2825,96.25,V444I,pol_protein,G1330A,G to A,nonsynonymous SNV,3022,1 -2.fastq,pol_protein L446L,2831,1.36,L446L,pol_protein,C1336T,C to T,synonymous SNV,3250,1 -2.fastq,pol_protein T447T,2836,99.94,T447T,pol_protein,T1341A,T to A,synonymous SNV,3217,1 -2.fastq,pol_protein E448A,2838,99.66,E448A,pol_protein,A1343C,A to C,nonsynonymous SNV,3223,1 -2.fastq,pol_protein A450A,2845,99.85,A450A,pol_protein,T1350A,T to A,synonymous SNV,3384,1 -2.fastq,pol_protein L454L,2855,97.55,L454L,pol_protein,T1360C,T to C,synonymous SNV,3429,1 -2.fastq,pol_protein E456E,2863,95.64,E456E,pol_protein,G1368A,G to A,synonymous SNV,3421,1 -2.fastq,pol_protein R458R,2869,99.39,R458R,pol_protein,A1374G,A to G,synonymous SNV,3457,1 -2.fastq,pol_protein V468V,2899,99.38,V468V,pol_protein,A1404G,A to G,synonymous SNV,3543,1 -2.fastq,pol_protein L476L,2923,99.85,L476L,pol_protein,G1428A,G to A,synonymous SNV,3237,1 -2.fastq,pol_protein A478A,2929,99.93,A478A,pol_protein,T1434A,T to A,synonymous SNV,3104,1 -2.fastq,pol_protein I480L,2933,99.87,I480L,pol_protein,A1438T,A to T,nonsynonymous SNV,3093,1 -2.fastq,pol_protein K482K,2941,98.75,K482K,pol_protein,A1446G,A to G,synonymous SNV,2974,1 -2.fastq,pol_protein Q483Q,2944,7.88,Q483Q,pol_protein,G1449A,G to A,synonymous SNV,2990,1 -2.fastq,pol_protein H485Q,2950,99.96,H485Q,pol_protein,T1455A,T to A,nonsynonymous SNV,2738,1 -2.fastq,pol_protein D486G,2952,99.82,D486G,pol_protein,A1457G,A to G,complex,2737,1 -2.fastq,pol_protein D486D,2953,95.02,D486D,pol_protein,T1458C,T to C,complex,2745,1 -2.fastq,pol_protein T489T,2962,53.12,T489T,pol_protein,A1467G,A to G,synonymous SNV,3160,1 -2.fastq,pol_protein I492I,2971,99.86,I492I,pol_protein,C1476T,C to T,synonymous SNV,2848,1 -2.fastq,pol_protein Y493Y,2974,99.75,Y493Y,pol_protein,C1479T,C to T,synonymous SNV,2853,1 -2.fastq,pol_protein E495E,2980,98.45,E495E,pol_protein,A1485G,A to G,synonymous SNV,2860,1 -2.fastq,pol_protein F497L,2984,1.26,F497L,pol_protein,T1489C,T to C,complex,2871,1 -2.fastq,pol_protein F497Y,2985,99.93,F497Y,pol_protein,T1490A,T to A,complex,2842,1 -2.fastq,pol_protein F497F,2986,99.96,F497F,pol_protein,C1491T,C to T,complex,2843,1 -2.fastq,pol_protein K498K,2989,7.27,K498K,pol_protein,A1494G,A to G,synonymous SNV,3182,1 -2.fastq,pol_protein L500L,2993,1.16,L500L,pol_protein,C1498T,C to T,complex,3283,1 -2.fastq,pol_protein L500L,2995,1.86,L500L,pol_protein,G1500A,G to A,complex,3294,1 -2.fastq,pol_protein G503G,3004,99.84,G503G,pol_protein,G1509A,G to A,synonymous SNV,3065,1 -2.fastq,pol_protein K504K,3007,99.77,K504K,pol_protein,G1512A,G to A,synonymous SNV,3064,1 -2.fastq,pol_protein K507R,3015,8.43,K507R,pol_protein,A1520G,A to G,nonsynonymous SNV,3050,1 -2.fastq,pol_protein M508T,3018,1.14,M508T,pol_protein,T1523C,T to C,complex,2997,1 -2.fastq,pol_protein M508I,3019,98.82,M508I,pol_protein,G1524A,G to A,complex,2723,1 -2.fastq,pol_protein T510A,3023,99.7,T510A,pol_protein,A1528G,A to G,complex,2691,1 -2.fastq,pol_protein T510S,3024,99.89,T510S,pol_protein,C1529G,C to G,complex,2684,1 -2.fastq,pol_protein A511T,3026,99.7,A511T,pol_protein,G1531A,G to A,nonsynonymous SNV,2689,1 -2.fastq,pol_protein T513T,3034,99.84,T513T,pol_protein,T1539C,T to C,synonymous SNV,3174,1 -2.fastq,pol_protein K517R,3045,1.02,K517R,pol_protein,A1550G,A to G,nonsynonymous SNV,3340,1 -2.fastq,pol_protein Q518Q,3049,99.02,Q518Q,pol_protein,G1554A,G to A,synonymous SNV,3258,1 -2.fastq,pol_protein V523V,3064,5.71,V523V,pol_protein,G1569A,G to A,synonymous SNV,3363,1 -2.fastq,pol_protein K525K,3070,4.28,K525K,pol_protein,A1575G,A to G,synonymous SNV,3353,1 -2.fastq,pol_protein A527A,3076,99.69,A527A,pol_protein,C1581A,C to A,synonymous SNV,3283,1 -2.fastq,pol_protein S530S,3085,3.77,S530S,pol_protein,C1590T,C to T,synonymous SNV,3431,1 -2.fastq,pol_protein T537T,3106,2.42,T537T,pol_protein,T1611C,T to C,synonymous SNV,3431,1 -2.fastq,pol_protein R541K,3117,2.28,R541K,pol_protein,G1622A,G to A,nonsynonymous SNV,3419,1 -2.fastq,pol_protein I544I,3127,100,I544I,pol_protein,C1632A,C to A,synonymous SNV,3120,1 -2.fastq,pol_protein K546R,3132,28.15,K546R,pol_protein,A1637G,A to G,complex,2947,1 -2.fastq,pol_protein K546K,3133,98.42,K546K,pol_protein,A1638G,A to G,complex,2920,1 -2.fastq,pol_protein T548A,3137,67.85,T548A,pol_protein,A1642G,A to G,nonsynonymous SNV,3012,1 -2.fastq,pol_protein E550E,3145,99.94,E550E,pol_protein,G1650A,G to A,synonymous SNV,3226,1 -2.fastq,pol_protein T551I,3147,2.2,T551I,pol_protein,C1652T,C to T,complex,3291,1 -2.fastq,pol_protein T551T,3148,1.75,T551T,pol_protein,A1653G,A to G,complex,3308,1 -2.fastq,pol_protein Y561C,3177,99.93,Y561C,pol_protein,A1682G,A to G,nonsynonymous SNV,3072,1 -2.fastq,pol_protein P563P,3184,37.1,P563P,pol_protein,T1689C,T to C,synonymous SNV,3203,1 -2.fastq,pol_protein V568V,3199,99.29,V568V,pol_protein,T1704C,T to C,synonymous SNV,3086,1 -2.fastq,pol_protein L573L,3212,99.73,L573L,pol_protein,C1717T,C to T,synonymous SNV,2966,1 -2.fastq,pol_protein V574V,3217,28.53,V574V,pol_protein,A1722G,A to G,synonymous SNV,3028,1 -2.fastq,pol_protein Y578Y,3229,58.69,Y578Y,pol_protein,C1734T,C to T,synonymous SNV,2537,1 -2.fastq,pol_protein L580L,3233,99.61,L580L,pol_protein,C1738T,C to T,complex,2329,1 -2.fastq,pol_protein L580L,3235,99.91,L580L,pol_protein,G1740A,G to A,complex,2308,1 -2.fastq,pol_protein E581E,3238,99.44,E581E,pol_protein,G1743A,G to A,synonymous SNV,2308,1 -2.fastq,pol_protein P584P,3247,2.79,P584P,pol_protein,C1752T,C to T,synonymous SNV,2344,1 -2.fastq,pol_protein L585M,3248,100,L585M,pol_protein,C1753A,C to A,complex,2306,1 -2.fastq,pol_protein L585L,3250,99.78,L585L,pol_protein,G1755A,G to A,complex,2288,1 -2.fastq,pol_protein E586K,3251,1.44,E586K,pol_protein,G1756A,G to A,complex,2288,1 -2.fastq,pol_protein E586V,3252,99.74,E586V,pol_protein,A1757T,A to T,complex,2289,1 -2.fastq,pol_protein V588A,3258,99.96,V588A,pol_protein,T1763C,T to C,nonsynonymous SNV,2391,1 -2.fastq,pol_protein T590T,3265,88.51,T590T,pol_protein,T1770C,T to C,synonymous SNV,2399,1 -2.fastq,pol_protein V593V,3274,99.7,V593V,pol_protein,G1779A,G to A,synonymous SNV,2363,1 -2.fastq,pol_protein G595G,3280,99.8,G595G,pol_protein,A1785G,A to G,synonymous SNV,1991,1 -2.fastq,pol_protein A596A,3283,99.75,A596A,pol_protein,G1788A,G to A,synonymous SNV,1992,1 -2.fastq,pol_protein N598N,3289,99.4,N598N,pol_protein,T1794C,T to C,synonymous SNV,2015,1 -2.fastq,pol_protein R599R,3292,4.55,R599R,pol_protein,G1797A,G to A,synonymous SNV,2032,1 -2.fastq,pol_protein E600E,3295,88.5,E600E,pol_protein,A1800G,A to G,synonymous SNV,1993,1 -2.fastq,pol_protein T601S,3297,99.59,T601S,pol_protein,C1802G,C to G,complex,1976,1 -2.fastq,pol_protein T601T,3298,99.44,T601T,pol_protein,T1803C,T to C,complex,1979,1 -2.fastq,pol_protein V603L,3302,95.61,V603L,pol_protein,G1807T,G to T,nonsynonymous SNV,2026,1 -2.fastq,pol_protein G607G,3316,99.93,G607G,pol_protein,G1821A,G to A,synonymous SNV,2789,1 -2.fastq,pol_protein V609I,3320,41.39,V609I,pol_protein,G1825A,G to A,nonsynonymous SNV,2847,1 -2.fastq,pol_protein R612R,3331,1.2,R612R,pol_protein,A1836G,A to G,synonymous SNV,2841,1 -2.fastq,pol_protein R614R,3337,99.48,R614R,pol_protein,G1842A,G to A,synonymous SNV,2500,1 -2.fastq,pol_protein Q615Q,3340,99.92,Q615Q,pol_protein,G1845A,G to A,synonymous SNV,2490,1 -2.fastq,pol_protein K616K,3343,4.12,K616K,pol_protein,A1848G,A to G,synonymous SNV,2502,1 -2.fastq,pol_protein I618V,3347,99.31,I618V,pol_protein,A1852G,A to G,complex,2473,1 -2.fastq,pol_protein I618I,3349,99.88,I618I,pol_protein,T1854C,T to C,complex,2467,1 -2.fastq,pol_protein T619S,3350,100,T619S,pol_protein,A1855T,A to T,complex,2467,1 -2.fastq,pol_protein T619T,3352,99.03,T619T,pol_protein,T1857C,T to C,complex,2480,1 -2.fastq,pol_protein T621T,3358,1.03,T621T,pol_protein,T1863G,T to G,synonymous SNV,2914,1 -2.fastq,pol_protein E622D,3361,99.97,E622D,pol_protein,A1866C,A to C,nonsynonymous SNV,2901,1 -2.fastq,pol_protein Q626Q,3373,3.48,Q626Q,pol_protein,G1878A,G to A,synonymous SNV,3079,1 -2.fastq,pol_protein A628T,3377,99.9,A628T,pol_protein,G1882A,G to A,nonsynonymous SNV,2975,1 -2.fastq,pol_protein E629E,3382,91.55,E629E,pol_protein,A1887G,A to G,synonymous SNV,2984,1 -2.fastq,pol_protein I633I,3394,99.9,I633I,pol_protein,C1899T,C to T,synonymous SNV,2926,1 -2.fastq,pol_protein Q634H,3397,99.9,Q634H,pol_protein,G1902T,G to T,nonsynonymous SNV,2913,1 -2.fastq,pol_protein L635L,3398,99.83,L635L,pol_protein,C1903T,C to T,synonymous SNV,2914,1 -2.fastq,pol_protein D639D,3412,11.42,D639D,pol_protein,T1917C,T to C,synonymous SNV,3241,1 -2.fastq,pol_protein E643E,3424,99.43,E643E,pol_protein,G1929A,G to A,synonymous SNV,3158,1 -2.fastq,pol_protein N645N,3430,2.93,N645N,pol_protein,C1935T,C to T,synonymous SNV,3217,1 -2.fastq,pol_protein I646V,3431,93.95,I646V,pol_protein,A1936G,A to G,nonsynonymous SNV,3100,1 -2.fastq,pol_protein V647V,3436,99.74,V647V,pol_protein,G1941A,G to A,synonymous SNV,3094,1 -2.fastq,pol_protein Q651Q,3448,99.47,Q651Q,pol_protein,G1953A,G to A,synonymous SNV,3189,1 -2.fastq,pol_protein A653A,3454,99.94,A653A,pol_protein,C1959A,C to A,synonymous SNV,3181,1 -2.fastq,pol_protein I656I,3463,1.22,I656I,pol_protein,C1968T,C to T,synonymous SNV,3279,1 -2.fastq,pol_protein A659A,3472,10.07,A659A,pol_protein,A1977G,A to G,synonymous SNV,3263,1 -2.fastq,pol_protein K663K,3484,99.84,K663K,pol_protein,G1989A,G to A,synonymous SNV,3127,1 -2.fastq,pol_protein E667E,3496,45.1,E667E,pol_protein,A2001G,A to G,synonymous SNV,3058,1 -2.fastq,pol_protein L668L,3499,99.9,L668L,pol_protein,G2004A,G to A,synonymous SNV,2957,1 -2.fastq,pol_protein V669V,3502,99.53,V669V,pol_protein,T2007C,T to C,synonymous SNV,2960,1 -2.fastq,pol_protein N678K,3529,99.97,N678K,pol_protein,C2034A,C to A,nonsynonymous SNV,3013,1 -2.fastq,pol_protein I682V,3539,99.46,I682V,pol_protein,A2044G,A to G,nonsynonymous SNV,3012,1 -2.fastq,pol_protein Y683Y,3544,1.89,Y683Y,pol_protein,C2049T,C to T,synonymous SNV,3131,1 -2.fastq,pol_protein L684L,3545,1.7,L684L,pol_protein,C2050T,C to T,synonymous SNV,3118,1 -2.fastq,pol_protein S685A,3548,99.97,S685A,pol_protein,T2053G,T to G,nonsynonymous SNV,3016,1 -2.fastq,pol_protein P688P,3559,43.31,P688P,pol_protein,A2064G,A to G,synonymous SNV,3116,1 -2.fastq,pol_protein H690H,3565,96.61,H690H,pol_protein,T2070C,T to C,synonymous SNV,3046,1 -2.fastq,pol_protein V703V,3604,99.96,V703V,pol_protein,A2109C,A to C,synonymous SNV,2647,1 -2.fastq,pol_protein S705C,3608,83.56,S705C,pol_protein,A2113T,A to T,complex,2627,1 -2.fastq,pol_protein S705T,3609,99.89,S705T,pol_protein,G2114C,G to C,complex,2625,1 -2.fastq,pol_protein I707I,3616,82.01,I707I,pol_protein,C2121T,C to T,synonymous SNV,2658,1 -2.fastq,pol_protein R708R,3619,2.7,R708R,pol_protein,G2124A,G to A,synonymous SNV,2666,1 -2.fastq,pol_protein V710V,3625,99.79,V710V,pol_protein,G2130A,G to A,synonymous SNV,2406,1 -2.fastq,pol_protein L711L,3628,99.96,L711L,pol_protein,G2133A,G to A,synonymous SNV,2376,1 -2.fastq,pol_protein F712F,3631,99.54,F712F,pol_protein,C2136T,C to T,synonymous SNV,2373,1 -2.fastq,pol_protein L713L,3632,99.49,L713L,pol_protein,C2137T,C to T,synonymous SNV,2374,1 -2.fastq,pol_protein G715G,3640,2.71,G715G,pol_protein,A2145G,A to G,synonymous SNV,2841,1 -2.fastq,pol_protein D717D,3646,1.21,D717D,pol_protein,T2151C,T to C,synonymous SNV,2887,1 -2.fastq,pol_protein A719A,3652,99.96,A719A,pol_protein,T2157C,T to C,synonymous SNV,2786,1 -2.fastq,pol_protein E721E,3658,98.1,E721E,pol_protein,A2163G,A to G,synonymous SNV,2530,1 -2.fastq,pol_protein E722D,3661,99.84,E722D,pol_protein,G2166T,G to T,nonsynonymous SNV,2523,1 -2.fastq,pol_protein H723H,3664,2.39,H723H,pol_protein,T2169C,T to C,synonymous SNV,2589,1 -2.fastq,pol_protein E724E,3667,85.44,E724E,pol_protein,A2172G,A to G,synonymous SNV,2584,1 -2.fastq,pol_protein K725K,3670,99.92,K725K,pol_protein,G2175A,G to A,synonymous SNV,2579,1 -2.fastq,pol_protein N728S,3678,100,N728S,pol_protein,A2183G,A to G,complex,2562,1 -2.fastq,pol_protein N728N,3679,99.88,N728N,pol_protein,C2184T,C to T,complex,2563,1 -2.fastq,pol_protein R731K,3687,1.17,R731K,pol_protein,G2192A,G to A,nonsynonymous SNV,2913,1 -2.fastq,pol_protein E736D,3703,99.75,E736D,pol_protein,G2208T,G to T,nonsynonymous SNV,2795,1 -2.fastq,pol_protein N738N,3709,99.61,N738N,pol_protein,T2214C,T to C,synonymous SNV,2799,1 -2.fastq,pol_protein P741P,3718,99.93,P741P,pol_protein,C2223T,C to T,synonymous SNV,2820,1 -2.fastq,pol_protein V748I,3737,99.78,V748I,pol_protein,G2242A,G to A,nonsynonymous SNV,2775,1 -2.fastq,pol_protein A749A,3742,99.82,A749A,pol_protein,T2247C,T to C,synonymous SNV,2791,1 -2.fastq,pol_protein K753K,3754,99.93,K753K,pol_protein,G2259A,G to A,synonymous SNV,2892,1 -2.fastq,pol_protein Q755Q,3760,99.89,Q755Q,pol_protein,G2265A,G to A,synonymous SNV,2633,1 -2.fastq,pol_protein L756L,3761,99.7,L756L,pol_protein,C2266T,C to T,synonymous SNV,2632,1 -2.fastq,pol_protein G758G,3769,99.72,G758G,pol_protein,G2274A,G to A,synonymous SNV,2841,1 -2.fastq,pol_protein A760A,3775,99.29,A760A,pol_protein,C2280T,C to T,synonymous SNV,2815,1 -2.fastq,pol_protein I761M,3778,99.86,I761M,pol_protein,A2283G,A to G,nonsynonymous SNV,2807,1 -2.fastq,pol_protein V765V,3790,2.08,V765V,pol_protein,A2295G,A to G,synonymous SNV,3023,1 -2.fastq,pol_protein D766D,3793,99.79,D766D,pol_protein,T2298C,T to C,synonymous SNV,2887,1 -2.fastq,pol_protein C767C,3796,99.79,C767C,pol_protein,C2301T,C to T,synonymous SNV,2891,1 -2.fastq,pol_protein G770G,3805,99.45,G770G,pol_protein,G2310A,G to A,synonymous SNV,2891,1 -2.fastq,pol_protein I771M,3808,99.72,I771M,pol_protein,A2313G,A to G,nonsynonymous SNV,2892,1 -2.fastq,pol_protein Q773Q,3814,1.68,Q773Q,pol_protein,A2319G,A to G,synonymous SNV,3089,1 -2.fastq,pol_protein L774L,3815,4,L774L,pol_protein,T2320C,T to C,synonymous SNV,3103,1 -2.fastq,pol_protein D775D,3820,2.9,D775D,pol_protein,T2325C,T to C,synonymous SNV,3105,1 -2.fastq,pol_protein V783V,3844,99.96,V783V,pol_protein,C2349T,C to T,synonymous SNV,2844,1 -2.fastq,pol_protein V788V,3859,99.55,V788V,pol_protein,C2364T,C to T,synonymous SNV,2679,1 -2.fastq,pol_protein G793G,3874,99.96,G793G,pol_protein,C2379A,C to A,synonymous SNV,2520,1 -2.fastq,pol_protein Y794Y,3877,99.8,Y794Y,pol_protein,C2382T,C to T,synonymous SNV,2521,1 -2.fastq,pol_protein I800I,3895,94.12,I800I,pol_protein,C2400T,C to T,synonymous SNV,2471,1 -2.fastq,pol_protein E803E,3904,83.59,E803E,pol_protein,A2409G,A to G,synonymous SNV,2448,1 -2.fastq,pol_protein Q806Q,3913,99.33,Q806Q,pol_protein,A2418G,A to G,synonymous SNV,2392,1 -2.fastq,pol_protein I812L,3929,94.19,I812L,pol_protein,A2434C,A to C,complex,2190,1 -2.fastq,pol_protein I812I,3931,100,I812I,pol_protein,A2436C,A to C,complex,2186,1 -2.fastq,pol_protein L813L,3934,7.6,L813L,pol_protein,A2439G,A to G,synonymous SNV,2238,1 -2.fastq,pol_protein K814K,3937,94.43,K814K,pol_protein,A2442G,A to G,synonymous SNV,2228,1 -2.fastq,pol_protein L815L,3938,1.14,L815L,pol_protein,T2443C,T to C,synonymous SNV,2292,1 -2.fastq,pol_protein A817G,3945,99.91,A817G,pol_protein,C2450G,C to G,nonsynonymous SNV,2221,1 -2.fastq,pol_protein I821V,3956,99.63,I821V,pol_protein,A2461G,A to G,complex,1913,1 -2.fastq,pol_protein I821I,3958,99.84,I821I,pol_protein,C2463A,C to A,complex,1912,1 -2.fastq,pol_protein V823I,3962,99.79,V823I,pol_protein,G2467A,G to A,complex,1908,1 -2.fastq,pol_protein V823A,3963,99.84,V823A,pol_protein,T2468C,T to C,complex,1910,1 -2.fastq,pol_protein D827D,3976,1.72,D827D,pol_protein,C2481T,C to T,synonymous SNV,2041,1 -2.fastq,pol_protein N828Y,3977,1.17,N828Y,pol_protein,A2482T,A to T,nonsynonymous SNV,1880,1 -2.fastq,pol_protein G829G,3982,99.78,G829G,pol_protein,C2487A,C to A,synonymous SNV,1377,1 -2.fastq,pol_protein S830G,3983,65.09,S830G,pol_protein,A2488G,A to G,complex,1374,1 -2.fastq,pol_protein S830T,3984,25.07,S830T,pol_protein,G2489C,G to C,complex,1373,1 -2.fastq,pol_protein S830S,3985,98.31,S830S,pol_protein,T2490C,T to C,complex,1373,1 -2.fastq,pol_protein T833I,3993,95.22,T833I,pol_protein,C2498T,C to T,complex,1362,1 -2.fastq,pol_protein T833T,3994,25.35,T833T,pol_protein,C2499T,C to T,complex,1366,1 -2.fastq,pol_protein A835T,3998,4.48,A835T,pol_protein,G2503A,G to A,complex,1328,1 -2.fastq,pol_protein A835A,4000,99.92,A835A,pol_protein,T2505A,T to A,complex,1276,1 -2.fastq,pol_protein A836T,4001,67.76,A836T,pol_protein,G2506A,G to A,complex,1281,1 -2.fastq,pol_protein A836A,4003,99.76,A836A,pol_protein,A2508T,A to T,complex,1280,1 -2.fastq,pol_protein V837I,4004,1.17,V837I,pol_protein,G2509A,G to A,complex,1284,1 -2.fastq,pol_protein V837V,4006,100,V837V,pol_protein,T2511G,T to G,complex,1287,1 -2.fastq,pol_protein A839A,4012,99.83,A839A,pol_protein,A2517C,A to C,synonymous SNV,1853,1 -2.fastq,pol_protein A844A,4027,99.58,A844A,pol_protein,G2532A,G to A,synonymous SNV,1898,1 -2.fastq,pol_protein G845G,4030,100,G845G,pol_protein,T2535G,T to G,synonymous SNV,1890,1 -2.fastq,pol_protein Q847K,4034,100,Q847K,pol_protein,C2539A,C to A,complex,1898,1 -2.fastq,pol_protein Q847Q,4036,99.1,Q847Q,pol_protein,A2541G,A to G,complex,1906,1 -2.fastq,pol_protein G851G,4048,100,G851G,pol_protein,A2553C,A to C,synonymous SNV,2140,1 -2.fastq,pol_protein I852I,4051,7.32,I852I,pol_protein,T2556C,T to C,synonymous SNV,2220,1 -2.fastq,pol_protein P856P,4063,99.86,P856P,pol_protein,T2568C,T to C,synonymous SNV,2217,1 -2.fastq,pol_protein Q859Q,4072,99.33,Q859Q,pol_protein,G2577A,G to A,synonymous SNV,2248,1 -2.fastq,pol_protein S864S,4087,99.71,S864S,pol_protein,C2592T,C to T,synonymous SNV,2418,1 -2.fastq,pol_protein E868Q,4097,11.72,E868Q,pol_protein,G2602C,G to C,nonsynonymous SNV,2579,1 -2.fastq,pol_protein K870K,4105,1.25,K870K,pol_protein,G2610A,G to A,synonymous SNV,2649,1 -2.fastq,pol_protein K871N,4108,99.8,K871N,pol_protein,A2613C,A to C,nonsynonymous SNV,2461,1 -2.fastq,pol_protein I872I,4111,99.92,I872I,pol_protein,C2616T,C to T,synonymous SNV,2456,1 -2.fastq,pol_protein G874G,4117,99.92,G874G,pol_protein,G2622A,G to A,synonymous SNV,2551,1 -2.fastq,pol_protein Q875Q,4120,12.77,Q875Q,pol_protein,G2625A,G to A,synonymous SNV,2622,1 -2.fastq,pol_protein E878D,4129,99.79,E878D,pol_protein,G2634T,G to T,nonsynonymous SNV,2419,1 -2.fastq,pol_protein Q879Q,4132,99.71,Q879Q,pol_protein,A2637G,A to G,synonymous SNV,2415,1 -2.fastq,pol_protein E881E,4138,99.79,E881E,pol_protein,G2643A,G to A,synonymous SNV,2407,1 -2.fastq,pol_protein H882H,4141,81.98,H882H,pol_protein,C2646T,C to T,synonymous SNV,2409,1 -2.fastq,pol_protein K884K,4147,99.46,K884K,pol_protein,G2652A,G to A,synonymous SNV,2573,1 -2.fastq,pol_protein A886A,4153,1.12,A886A,pol_protein,A2658G,A to G,synonymous SNV,2677,1 -2.fastq,pol_protein R898K,4188,8.6,R898K,pol_protein,G2693A,G to A,nonsynonymous SNV,7927,1 -2.fastq,pol_protein K899R,4191,27.23,K899R,pol_protein,A2696G,A to G,nonsynonymous SNV,7893,1 -2.fastq,pol_protein G904E,4206,23.71,G904E,pol_protein,G2711A,G to A,nonsynonymous SNV,7955,1 -2.fastq,pol_protein R910R,4225,66.99,R910R,pol_protein,A2730G,A to G,synonymous SNV,7862,1 -2.fastq,pol_protein I912V,4229,91,I912V,pol_protein,A2734G,A to G,nonsynonymous SNV,7912,1 -2.fastq,pol_protein D913D,4234,99.85,D913D,pol_protein,T2739C,T to C,synonymous SNV,7974,1 -2.fastq,pol_protein T917S,4244,99.97,T917S,pol_protein,A2749T,A to T,nonsynonymous SNV,7927,1 -2.fastq,pol_protein K922R,4260,9.27,K922R,pol_protein,A2765G,A to G,nonsynonymous SNV,7972,1 -2.fastq,pol_protein E923E,4264,2.35,E923E,pol_protein,A2769G,A to G,synonymous SNV,7947,1 -2.fastq,pol_protein L924L,4265,26.44,L924L,pol_protein,T2770C,T to C,synonymous SNV,7959,1 -2.fastq,pol_protein K926K,4273,99.91,K926K,pol_protein,G2778A,G to A,synonymous SNV,7871,1 -2.fastq,pol_protein I929T,4281,99.94,I929T,pol_protein,T2786C,T to C,nonsynonymous SNV,7891,1 -2.fastq,pol_protein N933N,4294,4.07,N933N,pol_protein,T2799C,T to C,synonymous SNV,7939,1 -2.fastq,pol_protein R939R,4312,76.15,R939R,pol_protein,A2817G,A to G,synonymous SNV,7828,1 -2.fastq,pol_protein D943D,4324,99.82,D943D,pol_protein,C2829T,C to T,synonymous SNV,7331,1 -2.fastq,pol_protein P944P,4327,99.97,P944P,pol_protein,T2832A,T to A,synonymous SNV,7332,1 -2.fastq,pol_protein I945L,4328,99.49,I945L,pol_protein,A2833C,A to C,nonsynonymous SNV,7343,1 -2.fastq,pol_protein A950A,4345,99.93,A950A,pol_protein,C2850A,C to A,synonymous SNV,7275,1 -2.fastq,pol_protein K951K,4348,99.72,K951K,pol_protein,A2853G,A to G,synonymous SNV,7289,1 -2.fastq,pol_protein L952L,4351,82.8,L952L,pol_protein,A2856T,A to T,synonymous SNV,7341,1 -2.fastq,pol_protein L953L,4354,2.58,L953L,pol_protein,C2859T,C to T,synonymous SNV,7580,1 -2.fastq,pol_protein D964D,4387,25.89,D964D,pol_protein,T2892C,T to C,synonymous SNV,7000,1 -2.fastq,pol_protein S966S,4393,1.56,S966S,pol_protein,T2898C,T to C,synonymous SNV,6961,1 -2.fastq,pol_protein K969K,4402,99.74,K969K,pol_protein,G2907A,G to A,synonymous SNV,6564,1 -2.fastq,pol_protein V971V,4408,85.75,V971V,pol_protein,A2913G,A to G,synonymous SNV,6461,1 -2.fastq,pol_protein R973R,4414,99.95,R973R,pol_protein,G2919A,G to A,synonymous SNV,6155,1 -2.fastq,pol_protein R974R,4417,99.64,R974R,pol_protein,G2922A,G to A,synonymous SNV,6165,1 -2.fastq,pol_protein K977K,4426,99.28,K977K,pol_protein,A2931G,A to G,synonymous SNV,6212,1 -2.fastq,pol_protein D981D,4438,19.46,D981D,pol_protein,T2943C,T to C,synonymous SNV,4170,1 -2.fastq,vif_protein R4K,4450,18.19,R4K,vif_protein,G11A,G to A,nonsynonymous SNV,4190,1 -2.fastq,vif_protein V7A,4459,34.32,V7A,vif_protein,T20C,T to C,nonsynonymous SNV,2791,1 -2.fastq,pol_protein A989T,4460,1.04,A989T,pol_protein,G2965A,G to A,complex,2790,1 -2.fastq,vif_protein L8Q,4462,4.25,L8Q,vif_protein,T23A,T to A,nonsynonymous SNV,2881,1 -2.fastq,pol_protein G994S,4475,99.86,G994S,pol_protein,G2980A,G to A,nonsynonymous SNV,2849,1 -2.fastq,vif_protein R19K,4495,99.65,R19K,vif_protein,G56A,G to A,nonsynonymous SNV,2608,1 -2.fastq,vif_protein S23S,4508,99.55,S23S,vif_protein,T69C,T to C,synonymous SNV,2669,1 -2.fastq,vif_protein L24L,4509,98.95,L24L,vif_protein,T70C,T to C,synonymous SNV,2668,1 -2.fastq,vif_protein R31R,4530,100,R31R,vif_protein,C91A,C to A,synonymous SNV,1042,1 -2.fastq,vif_protein G33E,4537,99.34,G33E,vif_protein,G98A,G to A,nonsynonymous SNV,1054,1 -2.fastq,vif_protein Q36K,4545,99.82,Q36K,vif_protein,C106A,C to A,nonsynonymous SNV,1082,1 -2.fastq,vif_protein K67T,4639,99.88,K67T,vif_protein,A200C,A to C,nonsynonymous SNV,2834,1 -2.fastq,vif_protein G71G,4652,99.02,G71G,vif_protein,G213T,G to T,synonymous SNV,3107,1 -2.fastq,vif_protein R77R,4670,99.55,R77R,vif_protein,G231A,G to A,synonymous SNV,3364,1 -2.fastq,vif_protein E78E,4673,100,E78E,vif_protein,G234A,G to A,synonymous SNV,3356,1 -2.fastq,vif_protein L81L,4680,12.51,L81L,vif_protein,T241C,T to C,complex,3536,1 -2.fastq,vif_protein L81L,4682,99.43,L81L,vif_protein,A243G,A to G,complex,3501,1 -2.fastq,vif_protein H83Q,4688,99.46,H83Q,vif_protein,T249G,T to G,nonsynonymous SNV,3567,1 -2.fastq,vif_protein S86S,4697,13.37,S86S,vif_protein,C258A,C to A,synonymous SNV,3683,1 -2.fastq,vif_protein L91Q,4711,99.97,L91Q,vif_protein,T272A,T to A,complex,3321,1 -2.fastq,vif_protein L91L,4712,99.64,L91L,vif_protein,G273A,G to A,complex,3333,1 -2.fastq,vif_protein R92G,4713,1.68,R92G,vif_protein,A274G,A to G,complex,3341,1 -2.fastq,vif_protein R92K,4714,34.89,R92K,vif_protein,G275A,G to A,complex,3388,1 -2.fastq,vif_protein R92R,4715,78.05,R92R,vif_protein,A276G,A to G,complex,3389,1 -2.fastq,vif_protein R93K,4717,12.14,R93K,vif_protein,G278A,G to A,nonsynonymous SNV,3597,1 -2.fastq,vif_protein Y94Y,4721,1.5,Y94Y,vif_protein,T282C,T to C,synonymous SNV,3810,1 -2.fastq,vif_protein V98I,4731,2.34,V98I,vif_protein,G292A,G to A,nonsynonymous SNV,3852,1 -2.fastq,vif_protein D99A,4735,9.31,D99A,vif_protein,A296C,A to C,nonsynonymous SNV,3828,1 -2.fastq,vif_protein G101S,4740,59.99,G101S,vif_protein,G301A,G to A,complex,3378,1 -2.fastq,vif_protein G101D,4741,99.75,G101D,vif_protein,G302A,G to A,complex,3269,1 -2.fastq,vif_protein L102L,4743,98.01,L102L,vif_protein,C304T,C to T,complex,3269,1 -2.fastq,vif_protein L102L,4745,99.79,L102L,vif_protein,G306A,G to A,complex,3273,1 -2.fastq,vif_protein A103T,4746,3.17,A103T,vif_protein,G307A,G to A,nonsynonymous SNV,3440,1 -2.fastq,vif_protein Q105K,4752,2.67,Q105K,vif_protein,C313A,C to A,complex,3526,1 -2.fastq,vif_protein Q105H,4754,99.81,Q105H,vif_protein,G315T,G to T,complex,3507,1 -2.fastq,vif_protein M109L,4764,100,M109L,vif_protein,A325C,A to C,nonsynonymous SNV,3477,1 -2.fastq,vif_protein Y111Y,4772,99.25,Y111Y,vif_protein,T333C,T to C,synonymous SNV,3480,1 -2.fastq,vif_protein D117E,4790,99.91,D117E,vif_protein,C351A,C to A,nonsynonymous SNV,3509,1 -2.fastq,vif_protein A119A,4796,99.42,A119A,vif_protein,C357T,C to T,synonymous SNV,3465,1 -2.fastq,vif_protein K122E,4803,8.64,K122E,vif_protein,A364G,A to G,complex,3314,1 -2.fastq,vif_protein K122R,4804,99.66,K122R,vif_protein,A365G,A to G,complex,3283,1 -2.fastq,vif_protein K122K,4805,99.94,K122K,vif_protein,A366G,A to G,complex,3283,1 -2.fastq,vif_protein T130S,4828,99.94,T130S,vif_protein,C389G,C to G,nonsynonymous SNV,3526,1 -2.fastq,vif_protein H139H,4856,5.39,H139H,vif_protein,T417C,T to C,synonymous SNV,3562,1 -2.fastq,vif_protein S144S,4871,100,S144S,vif_protein,A432T,A to T,synonymous SNV,3266,1 -2.fastq,vif_protein L145L,4872,96.69,L145L,vif_protein,T433C,T to C,synonymous SNV,3267,1 -2.fastq,vif_protein K157R,4909,47.62,K157R,vif_protein,A470G,A to G,complex,2993,1 -2.fastq,vif_protein K157K,4910,1.18,K157K,vif_protein,A471G,A to G,complex,2972,1 -2.fastq,vif_protein Q158K,4911,99.89,Q158K,vif_protein,C472A,C to A,nonsynonymous SNV,2855,1 -2.fastq,vif_protein K160R,4918,97.62,K160R,vif_protein,A479G,A to G,nonsynonymous SNV,2870,1 -2.fastq,vif_protein L163L,4926,99.93,L163L,vif_protein,C487T,C to T,synonymous SNV,2901,1 -2.fastq,vif_protein R167G,4938,99.7,R167G,vif_protein,A499G,A to G,complex,2715,1 -2.fastq,vif_protein R167T,4939,99.96,R167T,vif_protein,G500C,G to C,complex,2715,1 -2.fastq,vif_protein K168K,4943,87.24,K168K,vif_protein,G504A,G to A,synonymous SNV,2718,1 -2.fastq,vif_protein L169L,4944,77.43,L169L,vif_protein,T505C,T to C,synonymous SNV,2720,1 -2.fastq,vif_protein V170I,4947,99.78,V170I,vif_protein,G508A,G to A,complex,2707,1 -2.fastq,vif_protein V170A,4948,99.89,V170A,vif_protein,T509C,T to C,complex,2712,1 -2.fastq,vif_protein E171E,4952,2.54,E171E,vif_protein,G513A,G to A,synonymous SNV,3664,1 -2.fastq,vif_protein R181K,4981,98,R181K,vif_protein,G542A,G to A,nonsynonymous SNV,3553,1 -2.fastq,vif_protein R183H,4987,99.64,R183H,vif_protein,G548A,G to A,nonsynonymous SNV,2254,1 -2.fastq,vif_protein R184K,4990,99.28,R184K,vif_protein,G551A,G to A,nonsynonymous SNV,2215,1 -2.fastq,vif_protein G185E,4993,99.55,G185E,vif_protein,G554A,G to A,nonsynonymous SNV,2218,1 -2.fastq,vif_protein N186S,4996,98.55,N186S,vif_protein,A557G,A to G,nonsynonymous SNV,2220,1 -2.fastq,vpr_protein Q16K,5003,100,Q16K,vpr_protein,C46A,C to A,complex,2219,1 -2.fastq,vif_protein H192R,5014,4.71,H192R,vif_protein,A575G,A to G,nonsynonymous SNV,2273,1 -2.fastq,vpr_protein E21E,5020,20.72,E21E,vpr_protein,G63A,G to A,synonymous SNV,2233,1 -2.fastq,vpr_protein I22L,5021,99.86,I22L,vpr_protein,A64C,A to C,nonsynonymous SNV,2205,1 -2.fastq,vpr_protein L23L,5024,99.45,L23L,vpr_protein,C67T,C to T,complex,2195,1 -2.fastq,vpr_protein L23L,5026,8.98,L23L,vpr_protein,A69G,A to G,complex,2217,1 -2.fastq,vpr_protein E24E,5029,99.35,E24E,vpr_protein,A72G,A to G,synonymous SNV,2164,1 -2.fastq,vpr_protein E25E,5032,95.46,E25E,vpr_protein,A75G,A to G,synonymous SNV,2166,1 -2.fastq,vpr_protein L26L,5035,99.95,L26L,vpr_protein,C78T,C to T,synonymous SNV,2176,1 -2.fastq,vpr_protein Q28K,5039,99.95,Q28K,vpr_protein,C82A,C to A,nonsynonymous SNV,2181,1 -2.fastq,vpr_protein H33H,5056,98.97,H33H,vpr_protein,C99T,C to T,synonymous SNV,2240,1 -2.fastq,vpr_protein R36R,5065,99.52,R36R,vpr_protein,A108G,A to G,synonymous SNV,1867,1 -2.fastq,vpr_protein P37A,5066,99.94,P37A,vpr_protein,C109G,C to G,complex,1866,1 -2.fastq,vpr_protein P37L,5067,99.52,P37L,vpr_protein,C110T,C to T,complex,1867,1 -2.fastq,vpr_protein P37P,5068,99.84,P37P,vpr_protein,A111C,A to C,complex,1878,1 -2.fastq,vpr_protein S41G,5078,99.63,S41G,vpr_protein,A121G,A to G,complex,1911,1 -2.fastq,vpr_protein S41S,5080,1.77,S41S,vpr_protein,C123T,C to T,complex,1923,1 -2.fastq,vpr_protein L42L,5081,99.9,L42L,vpr_protein,C124T,C to T,synonymous SNV,1920,1 -2.fastq,vpr_protein G43G,5086,99.02,G43G,vpr_protein,A129G,A to G,synonymous SNV,1946,1 -2.fastq,vpr_protein Q44Q,5089,91.8,Q44Q,vpr_protein,A132G,A to G,synonymous SNV,1948,1 -2.fastq,vpr_protein Y45H,5090,99.39,Y45H,vpr_protein,T133C,T to C,nonsynonymous SNV,1957,1 -2.fastq,vpr_protein D48E,5101,99.94,D48E,vpr_protein,C144A,C to A,nonsynonymous SNV,3356,1 -2.fastq,vpr_protein T49T,5104,99.91,T49T,vpr_protein,C147T,C to T,synonymous SNV,3363,1 -2.fastq,vpr_protein V57V,5128,99.97,V57V,vpr_protein,T171G,T to G,synonymous SNV,3431,1 -2.fastq,vpr_protein V59A,5133,99.79,V59A,vpr_protein,T176C,T to C,nonsynonymous SNV,3382,1 -2.fastq,vpr_protein I63I,5146,99.92,I63I,vpr_protein,A189T,A to T,synonymous SNV,3589,1 -2.fastq,vpr_protein L67L,5158,99.75,L67L,vpr_protein,A201G,A to G,synonymous SNV,3566,1 -2.fastq,vpr_protein G75G,5182,99.76,G75G,vpr_protein,G225A,G to A,synonymous SNV,3333,1 -2.fastq,vpr_protein C76C,5185,99.82,C76C,vpr_protein,C228T,C to T,synonymous SNV,3344,1 -2.fastq,vpr_protein S79S,5194,100,S79S,vpr_protein,T237C,T to C,synonymous SNV,3243,1 -2.fastq,vpr_protein L84M,5207,70.18,L84M,vpr_protein,T250A,T to A,complex,75,1 -2.fastq,vpr_protein L84S,5208,2,L84S,vpr_protein,T251C,T to C,complex,73,1 -2.fastq,vpr_protein L84F,5209,96.77,L84F,vpr_protein,G252T,G to T,complex,48,1 -2.fastq,vpr_protein R85P,5211,78.12,R85P,vpr_protein,G254C,G to C,nonsynonymous SNV,53,1 -2.fastq,vpr_protein N91H,5228,4.34,N91H,vpr_protein,A271C,A to C,nonsynonymous SNV,3508,1 -2.fastq,vpr_protein S94R,5237,1.78,S94R,vpr_protein,A280C,A to C,complex,3647,1 -2.fastq,tat_protein N7S,5248,99.94,N7S,tat_protein,A20G,A to G,nonsynonymous SNV,3623,1 -2.fastq,tat_protein N12K,5264,99.97,N12K,tat_protein,C36G,C to G,nonsynonymous SNV,3458,1 -2.fastq,tat_protein H13H,5267,5.66,H13H,tat_protein,T39C,T to C,synonymous SNV,3453,1 -2.fastq,tat_protein A21A,5291,97.3,A21A,tat_protein,C63T,C to T,synonymous SNV,260,1 -2.fastq,tat_protein C22C,5294,95.93,C22C,tat_protein,C66T,C to T,synonymous SNV,231,1 -2.fastq,tat_protein C25C,5303,99.53,C25C,tat_protein,T75C,T to C,synonymous SNV,218,1 -2.fastq,tat_protein C27C,5309,100,C27C,tat_protein,C81T,C to T,synonymous SNV,205,1 -2.fastq,tat_protein C34C,5330,98.83,C34C,tat_protein,T102C,T to C,synonymous SNV,171,1 -2.fastq,tat_protein L35Q,5332,100,L35Q,tat_protein,T104A,T to A,nonsynonymous SNV,171,1 -2.fastq,tat_protein V36I,5334,98.25,V36I,tat_protein,G106A,G to A,complex,171,1 -2.fastq,tat_protein V36G,5335,98.88,V36G,tat_protein,T107G,T to G,complex,171,1 -2.fastq,tat_protein V36V,5336,47.09,V36V,tat_protein,T108G,T to G,complex,172,1 -2.fastq,tat_protein F38F,5342,97.34,F38F,tat_protein,T114C,T to C,synonymous SNV,189,1 -2.fastq,tat_protein Q39L,5344,96.34,Q39L,tat_protein,A116T,A to T,complex,197,1 -2.fastq,tat_protein Q39Q,5345,98.39,Q39Q,tat_protein,G117A,G to A,complex,208,1 -2.fastq,tat_protein I45I,5363,100,I45I,tat_protein,T135C,T to C,synonymous SNV,2203,1 -2.fastq,tat_protein S46S,5366,81.22,S46S,tat_protein,C138A,C to A,synonymous SNV,2208,1 -2.fastq,tat_protein S57G,5397,58.33,S57G,tat_protein,A169G,A to G,nonsynonymous SNV,15,1 -2.fastq,vpu_protein I18V,5519,83.33,I18V,vpu_protein,A52G,A to G,nonsynonymous SNV,6,1 -2.fastq,vpu_protein V19I,5522,100,V19I,vpu_protein,G55A,G to A,nonsynonymous SNV,6,1 -2.fastq,vpu_protein I26V,5543,100,I26V,vpu_protein,A76G,A to G,nonsynonymous SNV,15,1 -2.fastq,vpu_protein T29S,5552,100,T29S,vpu_protein,A85T,A to T,nonsynonymous SNV,16,1 -2.fastq,vpu_protein A31V,5559,100,A31V,vpu_protein,C92T,C to T,nonsynonymous SNV,16,1 -2.fastq,vpu_protein Y32F,5562,100,Y32F,vpu_protein,A95T,A to T,complex,16,1 -2.fastq,vpu_protein Y32Y,5563,100,Y32Y,vpu_protein,T96C,T to C,complex,16,1 -2.fastq,vpu_protein K37K,5578,100,K37K,vpu_protein,G111A,G to A,synonymous SNV,17,1 -2.fastq,vpu_protein W38L,5580,100,W38L,vpu_protein,G113T,G to T,nonsynonymous SNV,17,1 -2.fastq,vpu_protein R40R,5587,100,R40R,vpu_protein,G120A,G to A,synonymous SNV,17,1 -2.fastq,vpu_protein H42N,5591,94.12,H42N,vpu_protein,C124A,C to A,complex,17,1 -2.fastq,vpu_protein H42R,5592,100,H42R,vpu_protein,A125G,A to G,complex,17,1 -2.fastq,vpu_protein C46S,5603,100,C46S,vpu_protein,T136A,T to A,nonsynonymous SNV,18,1 -2.fastq,vpu_protein V48I,5609,94.74,V48I,vpu_protein,G142A,G to A,nonsynonymous SNV,19,1 -2.fastq,vpu_protein K49E,5612,100,K49E,vpu_protein,A145G,A to G,complex,19,1 -2.fastq,vpu_protein K49N,5614,100,K49N,vpu_protein,A147T,A to T,complex,18,1 -2.fastq,vpu_protein I51I,5620,100,I51I,vpu_protein,T153A,T to A,synonymous SNV,24,1 -2.fastq,vpu_protein R52R,5623,100,R52R,vpu_protein,G156A,G to A,synonymous SNV,24,1 -2.fastq,vpu_protein D57D,5638,21.21,D57D,vpu_protein,C171T,C to T,synonymous SNV,297,1 -2.fastq,envelope_glycoprotein R8K,5668,19.3,R8K,envelope_glycoprotein,G23A,G to A,nonsynonymous SNV,57,1 -2.fastq,envelope_glycoprotein Y10C,5674,10.53,Y10C,envelope_glycoprotein,A29G,A to G,nonsynonymous SNV,57,1 -2.fastq,envelope_glycoprotein P11Q,5677,100,P11Q,envelope_glycoprotein,C32A,C to A,nonsynonymous SNV,55,1 -2.fastq,vpu_protein T71A,5678,94.55,T71A,vpu_protein,A211G,A to G,nonsynonymous SNV,55,1 -2.fastq,envelope_glycoprotein V36V,5753,99.94,V36V,envelope_glycoprotein,A108C,A to C,synonymous SNV,6857,1 -2.fastq,envelope_glycoprotein Y37Y,5756,99.78,Y37Y,envelope_glycoprotein,C111T,C to T,synonymous SNV,6869,1 -2.fastq,envelope_glycoprotein V40V,5765,1.28,V40V,envelope_glycoprotein,A120G,A to G,synonymous SNV,7379,1 -2.fastq,envelope_glycoprotein E45E,5780,1.04,E45E,envelope_glycoprotein,A135G,A to G,synonymous SNV,7395,1 -2.fastq,envelope_glycoprotein K47T,5785,99.9,K47T,envelope_glycoprotein,A140C,A to C,complex,4984,1 -2.fastq,envelope_glycoprotein K47N,5786,99.92,K47N,envelope_glycoprotein,A141T,A to T,complex,4986,1 -2.fastq,envelope_glycoprotein V48I,5787,99.78,V48I,envelope_glycoprotein,G142A,G to A,complex,4989,1 -2.fastq,envelope_glycoprotein V48A,5788,99.78,V48A,envelope_glycoprotein,T143C,T to C,complex,4995,1 -2.fastq,envelope_glycoprotein V48V,5789,99.62,V48V,envelope_glycoprotein,T144C,T to C,complex,5023,1 -2.fastq,envelope_glycoprotein L50L,5793,99.72,L50L,envelope_glycoprotein,C148T,C to T,synonymous SNV,5062,1 -2.fastq,envelope_glycoprotein F51F,5798,99.74,F51F,envelope_glycoprotein,C153T,C to T,synonymous SNV,5481,1 -2.fastq,envelope_glycoprotein A56A,5813,97.29,A56A,envelope_glycoprotein,T168C,T to C,synonymous SNV,7171,1 -2.fastq,envelope_glycoprotein E60D,5825,99.87,E60D,envelope_glycoprotein,G180T,G to T,nonsynonymous SNV,7673,1 -2.fastq,envelope_glycoprotein K61T,5827,100,K61T,envelope_glycoprotein,A182C,A to C,nonsynonymous SNV,7676,1 -2.fastq,envelope_glycoprotein E62E,5831,99.71,E62E,envelope_glycoprotein,A186G,A to G,synonymous SNV,7895,1 -2.fastq,envelope_glycoprotein V63V,5834,99.97,V63V,envelope_glycoprotein,C189A,C to A,synonymous SNV,7939,1 -2.fastq,envelope_glycoprotein I66V,5841,99.15,I66V,envelope_glycoprotein,A196G,A to G,nonsynonymous SNV,7942,1 -2.fastq,envelope_glycoprotein A68A,5849,99.66,A68A,envelope_glycoprotein,T204C,T to C,synonymous SNV,7934,1 -2.fastq,envelope_glycoprotein V73V,5864,99.79,V73V,envelope_glycoprotein,G219A,G to A,synonymous SNV,7703,1 -2.fastq,envelope_glycoprotein P74P,5867,1.08,P74P,envelope_glycoprotein,C222T,C to T,synonymous SNV,7899,1 -2.fastq,envelope_glycoprotein M82V,5889,99.9,M82V,envelope_glycoprotein,A244G,A to G,complex,5759,1 -2.fastq,envelope_glycoprotein M82I,5891,99.86,M82I,envelope_glycoprotein,G246A,G to A,complex,5755,1 -2.fastq,envelope_glycoprotein V83V,5894,99.93,V83V,envelope_glycoprotein,T249A,T to A,synonymous SNV,5750,1 -2.fastq,envelope_glycoprotein L84L,5895,99.95,L84L,envelope_glycoprotein,T250C,T to C,complex,5750,1 -2.fastq,envelope_glycoprotein L84L,5897,99.26,L84L,envelope_glycoprotein,G252A,G to A,complex,5784,1 -2.fastq,envelope_glycoprotein K85E,5898,99.43,K85E,envelope_glycoprotein,A253G,A to G,complex,5785,1 -2.fastq,envelope_glycoprotein K85R,5899,2.1,K85R,envelope_glycoprotein,A254G,A to G,complex,5858,1 -2.fastq,envelope_glycoprotein V87V,5906,99.72,V87V,envelope_glycoprotein,A261G,A to G,synonymous SNV,6718,1 -2.fastq,envelope_glycoprotein N90Y,5913,99.97,N90Y,envelope_glycoprotein,A268T,A to T,complex,6872,1 -2.fastq,envelope_glycoprotein N90N,5915,2.06,N90N,envelope_glycoprotein,T270C,T to C,complex,7049,1 -2.fastq,envelope_glycoprotein N92N,5921,1.82,N92N,envelope_glycoprotein,C276T,C to T,synonymous SNV,7193,1 -2.fastq,envelope_glycoprotein D100N,5943,2.07,D100N,envelope_glycoprotein,G298A,G to A,complex,7232,1 -2.fastq,envelope_glycoprotein D100E,5945,99.91,D100E,envelope_glycoprotein,T300A,T to A,complex,7084,1 -2.fastq,envelope_glycoprotein I107I,5966,98.77,I107I,envelope_glycoprotein,T321C,T to C,synonymous SNV,6767,1 -2.fastq,envelope_glycoprotein D111D,5978,1.33,D111D,envelope_glycoprotein,T333C,T to C,synonymous SNV,6588,1 -2.fastq,envelope_glycoprotein S113S,5984,99.89,S113S,envelope_glycoprotein,C339T,C to T,synonymous SNV,6374,1 -2.fastq,envelope_glycoprotein P116P,5993,99.89,P116P,envelope_glycoprotein,C348A,C to A,synonymous SNV,6207,1 -2.fastq,envelope_glycoprotein K119K,6002,1.07,K119K,envelope_glycoprotein,G357A,G to A,synonymous SNV,6070,1 -2.fastq,envelope_glycoprotein L120L,6003,97.4,L120L,envelope_glycoprotein,T358C,T to C,synonymous SNV,5959,1 -2.fastq,envelope_glycoprotein V125V,6020,98.58,V125V,envelope_glycoprotein,C375T,C to T,synonymous SNV,2559,1 -2.fastq,envelope_glycoprotein T126T,6023,99.9,T126T,envelope_glycoprotein,T378G,T to G,synonymous SNV,2490,1 -2.fastq,envelope_glycoprotein N128D,6027,4.63,N128D,envelope_glycoprotein,A382G,A to G,nonsynonymous SNV,2455,1 -2.fastq,envelope_glycoprotein C129C,6032,88.68,C129C,envelope_glycoprotein,T387C,T to C,synonymous SNV,61,1 -2.fastq,envelope_glycoprotein N131K,6038,6.67,N131K,envelope_glycoprotein,T393G,T to G,nonsynonymous SNV,19,1 -2.fastq,envelope_glycoprotein V213L,6282,100,V213L,envelope_glycoprotein,G637C,G to C,complex,15,1 -2.fastq,envelope_glycoprotein V213V,6284,100,V213V,envelope_glycoprotein,A639C,A to C,complex,14,1 -2.fastq,envelope_glycoprotein Q215Q,6290,45.63,Q215Q,envelope_glycoprotein,A645G,A to G,synonymous SNV,259,1 -2.fastq,envelope_glycoprotein C217C,6296,2.2,C217C,envelope_glycoprotein,T651C,T to C,synonymous SNV,415,1 -2.fastq,envelope_glycoprotein V220I,6303,98.51,V220I,envelope_glycoprotein,G658A,G to A,complex,469,1 -2.fastq,envelope_glycoprotein V220V,6305,98.73,V220V,envelope_glycoprotein,C660A,C to A,complex,476,1 -2.fastq,envelope_glycoprotein S221T,6306,98.53,S221T,envelope_glycoprotein,T661A,T to A,complex,486,1 -2.fastq,envelope_glycoprotein S221S,6308,97.51,S221S,envelope_glycoprotein,T663C,T to C,complex,486,1 -2.fastq,envelope_glycoprotein D223E,6314,99.84,D223E,envelope_glycoprotein,C669G,C to G,nonsynonymous SNV,652,1 -2.fastq,envelope_glycoprotein I225I,6320,96.76,I225I,envelope_glycoprotein,C675T,C to T,synonymous SNV,720,1 -2.fastq,envelope_glycoprotein P226P,6323,98.17,P226P,envelope_glycoprotein,T678C,T to C,synonymous SNV,730,1 -2.fastq,envelope_glycoprotein A231A,6338,99.83,A231A,envelope_glycoprotein,T693C,T to C,synonymous SNV,4669,1 -2.fastq,envelope_glycoprotein P232P,6341,99.36,P232P,envelope_glycoprotein,A696G,A to G,synonymous SNV,4691,1 -2.fastq,envelope_glycoprotein Y235F,6349,100,Y235F,envelope_glycoprotein,A704T,A to T,nonsynonymous SNV,5170,1 -2.fastq,envelope_glycoprotein L238L,6359,82.06,L238L,envelope_glycoprotein,A714C,A to C,synonymous SNV,5596,1 -2.fastq,envelope_glycoprotein N241N,6368,99.74,N241N,envelope_glycoprotein,T723C,T to C,synonymous SNV,5827,1 -2.fastq,envelope_glycoprotein K243K,6374,1.59,K243K,envelope_glycoprotein,G729A,G to A,synonymous SNV,5929,1 -2.fastq,envelope_glycoprotein S246G,6381,93.26,S246G,envelope_glycoprotein,A736G,A to G,complex,5965,1 -2.fastq,envelope_glycoprotein S246N,6382,99.8,S246N,envelope_glycoprotein,G737A,G to A,complex,5978,1 -2.fastq,envelope_glycoprotein K248K,6389,98.81,K248K,envelope_glycoprotein,A744G,A to G,synonymous SNV,6029,1 -2.fastq,envelope_glycoprotein P250S,6393,97.21,P250S,envelope_glycoprotein,C748T,C to T,complex,6073,1 -2.fastq,envelope_glycoprotein P250L,6394,99.8,P250L,envelope_glycoprotein,C749T,C to T,complex,6074,1 -2.fastq,envelope_glycoprotein C251C,6398,99.84,C251C,envelope_glycoprotein,C753T,C to T,synonymous SNV,6145,1 -2.fastq,envelope_glycoprotein N252K,6401,99.8,N252K,envelope_glycoprotein,T756A,T to A,nonsynonymous SNV,6164,1 -2.fastq,envelope_glycoprotein K264R,6436,99.81,K264R,envelope_glycoprotein,A791G,A to G,complex,7336,1 -2.fastq,envelope_glycoprotein K264K,6437,5.9,K264K,envelope_glycoprotein,G792A,G to A,complex,7358,1 -2.fastq,envelope_glycoprotein V266V,6443,99.87,V266V,envelope_glycoprotein,G798A,G to A,synonymous SNV,7170,1 -2.fastq,envelope_glycoprotein L271L,6458,99.03,L271L,envelope_glycoprotein,A813G,A to G,synonymous SNV,6695,1 -2.fastq,envelope_glycoprotein L273L,6462,99.74,L273L,envelope_glycoprotein,T817C,T to C,synonymous SNV,6656,1 -2.fastq,envelope_glycoprotein G275G,6470,91.27,G275G,envelope_glycoprotein,T825C,T to C,synonymous SNV,5937,1 -2.fastq,envelope_glycoprotein S276S,6473,91.1,S276S,envelope_glycoprotein,C828T,C to T,synonymous SNV,5901,1 -2.fastq,envelope_glycoprotein L277L,6474,3.55,L277L,envelope_glycoprotein,C829T,C to T,synonymous SNV,5898,1 -2.fastq,envelope_glycoprotein K280E,6483,97.99,K280E,envelope_glycoprotein,A838G,A to G,nonsynonymous SNV,3874,1 -2.fastq,envelope_glycoprotein E281E,6488,99.27,E281E,envelope_glycoprotein,A843G,A to G,synonymous SNV,3762,1 -2.fastq,envelope_glycoprotein I282V,6489,99.76,I282V,envelope_glycoprotein,A844G,A to G,nonsynonymous SNV,3753,1 -2.fastq,envelope_glycoprotein I283V,6492,83.26,I283V,envelope_glycoprotein,A847G,A to G,nonsynonymous SNV,3752,1 -2.fastq,envelope_glycoprotein I284V,6495,8.46,I284V,envelope_glycoprotein,A850G,A to G,complex,3755,1 -2.fastq,envelope_glycoprotein I284I,6497,18.21,I284I,envelope_glycoprotein,T852C,T to C,complex,3754,1 -2.fastq,envelope_glycoprotein R285K,6499,1.58,R285K,envelope_glycoprotein,G854A,G to A,nonsynonymous SNV,3739,1 -2.fastq,envelope_glycoprotein E287D,6506,27.11,E287D,envelope_glycoprotein,A861C,A to C,nonsynonymous SNV,2644,1 -2.fastq,envelope_glycoprotein N288N,6509,99.5,N288N,envelope_glycoprotein,C864T,C to T,synonymous SNV,1211,1 -2.fastq,envelope_glycoprotein L289L,6510,99.67,L289L,envelope_glycoprotein,C865T,C to T,complex,1208,1 -2.fastq,envelope_glycoprotein L289L,6512,99.75,L289L,envelope_glycoprotein,G867C,G to C,complex,1208,1 -2.fastq,envelope_glycoprotein T290T,6515,84.49,T290T,envelope_glycoprotein,A870G,A to G,synonymous SNV,1210,1 -2.fastq,envelope_glycoprotein D291N,6516,52.87,D291N,envelope_glycoprotein,G871A,G to A,nonsynonymous SNV,1212,1 -2.fastq,envelope_glycoprotein A293A,6524,100,A293A,envelope_glycoprotein,T879A,T to A,synonymous SNV,1160,1 -2.fastq,envelope_glycoprotein T295T,6530,99.2,T295T,envelope_glycoprotein,A885C,A to C,synonymous SNV,1136,1 -2.fastq,envelope_glycoprotein V298I,6537,9.42,V298I,envelope_glycoprotein,G892A,G to A,nonsynonymous SNV,1083,1 -2.fastq,envelope_glycoprotein H299Q,6542,98.97,H299Q,envelope_glycoprotein,T897A,T to A,nonsynonymous SNV,788,1 -2.fastq,envelope_glycoprotein L300F,6543,99.49,L300F,envelope_glycoprotein,C898T,C to T,complex,780,1 -2.fastq,envelope_glycoprotein L300L,6545,100,L300L,envelope_glycoprotein,T900G,T to G,complex,778,1 -2.fastq,envelope_glycoprotein E302E,6551,99.73,E302E,envelope_glycoprotein,G906A,G to A,synonymous SNV,739,1 -2.fastq,envelope_glycoprotein S303T,6552,99.86,S303T,envelope_glycoprotein,T907A,T to A,nonsynonymous SNV,739,1 -2.fastq,envelope_glycoprotein E305K,6558,99.86,E305K,envelope_glycoprotein,G913A,G to A,complex,718,1 -2.fastq,envelope_glycoprotein E305A,6559,99.86,E305A,envelope_glycoprotein,A914C,A to C,complex,718,1 -2.fastq,envelope_glycoprotein E305E,6560,99.86,E305E,envelope_glycoprotein,G915A,G to A,complex,718,1 -2.fastq,envelope_glycoprotein V307M,6564,99.72,V307M,envelope_glycoprotein,G919A,G to A,complex,724,1 -2.fastq,envelope_glycoprotein V307E,6565,100,V307E,envelope_glycoprotein,T920A,T to A,complex,721,1 -2.fastq,envelope_glycoprotein V307V,6566,99.86,V307V,envelope_glycoprotein,G921T,G to T,complex,725,1 -2.fastq,envelope_glycoprotein C308C,6569,96.47,C308C,envelope_glycoprotein,C924T,C to T,synonymous SNV,748,1 -2.fastq,envelope_glycoprotein R316R,6593,99.55,R316R,envelope_glycoprotein,G948A,G to A,synonymous SNV,5513,1 -2.fastq,envelope_glycoprotein M319I,6602,99.93,M319I,envelope_glycoprotein,G957A,G to A,nonsynonymous SNV,5443,1 -2.fastq,envelope_glycoprotein R320R,6603,48.91,R320R,envelope_glycoprotein,A958C,A to C,complex,5443,1 -2.fastq,envelope_glycoprotein R320T,6604,100,R320T,envelope_glycoprotein,G959C,G to C,complex,5443,1 -2.fastq,envelope_glycoprotein R320S,6605,100,R320S,envelope_glycoprotein,G960T,G to T,complex,5443,1 -2.fastq,envelope_glycoprotein Q325K,6618,99.91,Q325K,envelope_glycoprotein,C973A,C to A,complex,5388,1 -2.fastq,envelope_glycoprotein Q325R,6619,99.67,Q325R,envelope_glycoprotein,A974G,A to G,complex,5384,1 -2.fastq,envelope_glycoprotein T326A,6621,99.89,T326A,envelope_glycoprotein,A976G,A to G,nonsynonymous SNV,5381,1 -2.fastq,envelope_glycoprotein F327F,6626,99.5,F327F,envelope_glycoprotein,C981T,C to T,synonymous SNV,5372,1 -2.fastq,envelope_glycoprotein A329T,6630,97.87,A329T,envelope_glycoprotein,G985A,G to A,nonsynonymous SNV,5361,1 -2.fastq,envelope_glycoprotein E332K,6639,29.52,E332K,envelope_glycoprotein,G994A,G to A,complex,5342,1 -2.fastq,envelope_glycoprotein E332A,6640,24.37,E332A,envelope_glycoprotein,A995C,A to C,complex,5326,1 -2.fastq,envelope_glycoprotein E332D,6641,99.98,E332D,envelope_glycoprotein,A996C,A to C,complex,5317,1 -2.fastq,envelope_glycoprotein N336D,6651,99.58,N336D,envelope_glycoprotein,A1006G,A to G,nonsynonymous SNV,5249,1 -2.fastq,envelope_glycoprotein R338R,6659,5.57,R338R,envelope_glycoprotein,A1014G,A to G,synonymous SNV,5152,1 -2.fastq,envelope_glycoprotein Q339K,6660,99.98,Q339K,envelope_glycoprotein,C1015A,C to A,nonsynonymous SNV,5066,1 -2.fastq,envelope_glycoprotein I344L,6675,99.65,I344L,envelope_glycoprotein,A1030C,A to C,nonsynonymous SNV,4587,1 -2.fastq,envelope_glycoprotein S347I,6685,11.11,S347I,envelope_glycoprotein,G1040T,G to T,complex,170,1 -2.fastq,envelope_glycoprotein S347R,6686,23.08,S347R,envelope_glycoprotein,C1041A,C to A,complex,188,1 -2.fastq,envelope_glycoprotein T350N,6694,100,T350N,envelope_glycoprotein,C1049A,C to A,nonsynonymous SNV,119,1 -2.fastq,envelope_glycoprotein R351K,6697,99.1,R351K,envelope_glycoprotein,G1052A,G to A,complex,111,1 -2.fastq,envelope_glycoprotein R351R,6698,100,R351R,envelope_glycoprotein,G1053A,G to A,complex,111,1 -2.fastq,envelope_glycoprotein Q354H,6707,95.31,Q354H,envelope_glycoprotein,A1062C,A to C,nonsynonymous SNV,64,1 -2.fastq,envelope_glycoprotein R355R,6708,96.83,R355R,envelope_glycoprotein,A1063C,A to C,complex,65,1 -2.fastq,envelope_glycoprotein R355M,6709,92.19,R355M,envelope_glycoprotein,G1064T,G to T,complex,65,1 -2.fastq,envelope_glycoprotein S357G,6714,100,S357G,envelope_glycoprotein,A1069G,A to G,nonsynonymous SNV,65,1 -2.fastq,envelope_glycoprotein E358G,6718,1.54,E358G,envelope_glycoprotein,A1073G,A to G,nonsynonymous SNV,65,1 -2.fastq,envelope_glycoprotein R361K,6727,1.56,R361K,envelope_glycoprotein,G1082A,G to A,nonsynonymous SNV,64,1 -2.fastq,envelope_glycoprotein L379P,6781,100,L379P,envelope_glycoprotein,T1136C,T to C,nonsynonymous SNV,2,1 -2.fastq,envelope_glycoprotein Q423P,6913,86.36,Q423P,envelope_glycoprotein,A1268C,A to C,complex,22,1 -2.fastq,envelope_glycoprotein Q423Q,6914,76.19,Q423Q,envelope_glycoprotein,G1269A,G to A,complex,22,1 -2.fastq,envelope_glycoprotein K425R,6919,33.33,K425R,envelope_glycoprotein,A1274G,A to G,nonsynonymous SNV,66,1 -2.fastq,envelope_glycoprotein V430I,6933,96.56,V430I,envelope_glycoprotein,G1288A,G to A,nonsynonymous SNV,5696,1 -2.fastq,envelope_glycoprotein N431N,6938,1.34,N431N,envelope_glycoprotein,C1293T,C to T,synonymous SNV,5726,1 -2.fastq,envelope_glycoprotein G435E,6949,99.95,G435E,envelope_glycoprotein,G1304A,G to A,complex,5726,1 -2.fastq,envelope_glycoprotein G435G,6950,99.88,G435G,envelope_glycoprotein,G1305A,G to A,complex,5726,1 -2.fastq,envelope_glycoprotein Q438K,6957,100,Q438K,envelope_glycoprotein,C1312A,C to A,complex,5725,1 -2.fastq,envelope_glycoprotein Q438R,6958,1,Q438R,envelope_glycoprotein,A1313G,A to G,complex,5725,1 -2.fastq,envelope_glycoprotein I445I,6980,3.45,I445I,envelope_glycoprotein,T1335C,T to C,synonymous SNV,70,1 -2.fastq,envelope_glycoprotein A446G,6982,2.17,A446G,envelope_glycoprotein,C1337G,C to G,nonsynonymous SNV,47,1 -2.fastq,envelope_glycoprotein N448H,6987,100,N448H,envelope_glycoprotein,A1342C,A to C,complex,20,1 -2.fastq,envelope_glycoprotein N448K,6989,100,N448K,envelope_glycoprotein,C1344A,C to A,complex,10,1 -2.fastq,envelope_glycoprotein V477A,7075,35.48,V477A,envelope_glycoprotein,T1430C,T to C,complex,51,1 -2.fastq,envelope_glycoprotein V477V,7076,83.78,V477V,envelope_glycoprotein,A1431C,A to C,complex,74,1 -2.fastq,envelope_glycoprotein G481A,7087,99.99,G481A,envelope_glycoprotein,G1442C,G to C,nonsynonymous SNV,8008,1 -2.fastq,envelope_glycoprotein D484D,7097,1.54,D484D,envelope_glycoprotein,T1452C,T to C,synonymous SNV,8020,1 -2.fastq,envelope_glycoprotein R486R,7103,3.09,R486R,envelope_glycoprotein,G1458A,G to A,synonymous SNV,8026,1 -2.fastq,envelope_glycoprotein R490K,7114,1,R490K,envelope_glycoprotein,G1469A,G to A,nonsynonymous SNV,8018,1 -2.fastq,envelope_glycoprotein E492K,7119,1.34,E492K,envelope_glycoprotein,G1474A,G to A,nonsynonymous SNV,7994,1 -2.fastq,envelope_glycoprotein Y494Y,7127,99.92,Y494Y,envelope_glycoprotein,C1482T,C to T,synonymous SNV,7785,1 -2.fastq,envelope_glycoprotein Y496Y,7133,1.25,Y496Y,envelope_glycoprotein,T1488C,T to C,synonymous SNV,7979,1 -2.fastq,envelope_glycoprotein V498V,7139,99.81,V498V,envelope_glycoprotein,G1494A,G to A,synonymous SNV,7534,1 -2.fastq,envelope_glycoprotein E500K,7143,99.88,E500K,envelope_glycoprotein,G1498A,G to A,nonsynonymous SNV,7477,1 -2.fastq,envelope_glycoprotein K502E,7149,78.12,K502E,envelope_glycoprotein,A1504G,A to G,complex,7421,1 -2.fastq,envelope_glycoprotein K502K,7151,99.66,K502K,envelope_glycoprotein,G1506A,G to A,complex,7363,1 -2.fastq,envelope_glycoprotein P508P,7169,99.21,P508P,envelope_glycoprotein,T1524C,T to C,synonymous SNV,6776,1 -2.fastq,envelope_glycoprotein S510T,7173,99.98,S510T,envelope_glycoprotein,T1528A,T to A,nonsynonymous SNV,6633,1 -2.fastq,envelope_glycoprotein S511A,7176,99.97,S511A,envelope_glycoprotein,T1531G,T to G,nonsynonymous SNV,6633,1 -2.fastq,envelope_glycoprotein R512K,7180,99.91,R512K,envelope_glycoprotein,G1535A,G to A,nonsynonymous SNV,6594,1 -2.fastq,envelope_glycoprotein R513R,7184,99.8,R513R,envelope_glycoprotein,G1539A,G to A,synonymous SNV,6597,1 -2.fastq,envelope_glycoprotein E517Q,7194,100,E517Q,envelope_glycoprotein,G1549C,G to C,complex,7841,1 -2.fastq,envelope_glycoprotein E517E,7196,9.66,E517E,envelope_glycoprotein,G1551A,G to A,complex,7893,1 -2.fastq,envelope_glycoprotein V523V,7214,1.49,V523V,envelope_glycoprotein,G1569A,G to A,synonymous SNV,7474,1 -2.fastq,envelope_glycoprotein G524R,7215,99.8,G524R,envelope_glycoprotein,G1570A,G to A,complex,7409,1 -2.fastq,envelope_glycoprotein G524A,7216,99.99,G524A,envelope_glycoprotein,G1571C,G to C,complex,7409,1 -2.fastq,envelope_glycoprotein I525L,7218,99.99,I525L,envelope_glycoprotein,A1573C,A to C,nonsynonymous SNV,7410,1 -2.fastq,envelope_glycoprotein V528M,7227,96.89,V528M,envelope_glycoprotein,G1582A,G to A,nonsynonymous SNV,7752,1 -2.fastq,envelope_glycoprotein A536A,7253,42.07,A536A,envelope_glycoprotein,A1608C,A to C,synonymous SNV,7830,1 -2.fastq,envelope_glycoprotein A543A,7274,99.35,A543A,envelope_glycoprotein,A1629G,A to G,synonymous SNV,7583,1 -2.fastq,envelope_glycoprotein S544S,7277,2.57,S544S,envelope_glycoprotein,A1632G,A to G,synonymous SNV,7686,1 -2.fastq,envelope_glycoprotein I545V,7278,15.45,I545V,envelope_glycoprotein,A1633G,A to G,complex,7666,1 -2.fastq,envelope_glycoprotein I545M,7280,99.67,I545M,envelope_glycoprotein,A1635G,A to G,complex,7572,1 -2.fastq,envelope_glycoprotein Q550Q,7295,4.42,Q550Q,envelope_glycoprotein,G1650A,G to A,synonymous SNV,6540,1 -2.fastq,envelope_glycoprotein Q553L,7303,99.84,Q553L,envelope_glycoprotein,A1658T,A to T,nonsynonymous SNV,3834,1 -2.fastq,envelope_glycoprotein L554L,7305,89.77,L554L,envelope_glycoprotein,T1660C,T to C,synonymous SNV,3842,1 -2.fastq,envelope_glycoprotein Q562Q,7331,41.71,Q562Q,envelope_glycoprotein,A1686G,A to G,synonymous SNV,3789,1 -2.fastq,envelope_glycoprotein S563R,7332,42.93,S563R,envelope_glycoprotein,A1687C,A to C,complex,3783,1 -2.fastq,envelope_glycoprotein S563N,7333,99.73,S563N,envelope_glycoprotein,G1688A,G to A,complex,3759,1 -2.fastq,envelope_glycoprotein N564N,7337,36.31,N564N,envelope_glycoprotein,T1692C,T to C,synonymous SNV,3908,1 -2.fastq,envelope_glycoprotein L565L,7338,40.58,L565L,envelope_glycoprotein,T1693C,T to C,synonymous SNV,3941,1 -2.fastq,envelope_glycoprotein L575L,7368,69.52,L575L,envelope_glycoprotein,C1723T,C to T,synonymous SNV,4723,1 -2.fastq,envelope_glycoprotein T579T,7382,99.87,T579T,envelope_glycoprotein,G1737A,G to A,synonymous SNV,4736,1 -2.fastq,envelope_glycoprotein T588A,7407,99.51,T588A,envelope_glycoprotein,A1762G,A to G,nonsynonymous SNV,4488,1 -2.fastq,envelope_glycoprotein L591L,7418,2.37,L591L,envelope_glycoprotein,G1773A,G to A,synonymous SNV,4362,1 -2.fastq,envelope_glycoprotein I593V,7422,54.97,I593V,envelope_glycoprotein,A1777G,A to G,complex,4198,1 -2.fastq,envelope_glycoprotein I593M,7424,99.88,I593M,envelope_glycoprotein,C1779G,C to G,complex,4154,1 -2.fastq,envelope_glycoprotein K598Q,7437,99.9,K598Q,envelope_glycoprotein,A1792C,A to C,nonsynonymous SNV,4002,1 -2.fastq,envelope_glycoprotein L603L,7454,87.92,L603L,envelope_glycoprotein,A1809G,A to G,synonymous SNV,3767,1 -2.fastq,envelope_glycoprotein G607G,7466,96.54,G607G,envelope_glycoprotein,C1821T,C to T,synonymous SNV,3471,1 -2.fastq,envelope_glycoprotein L612L,7481,98.98,L612L,envelope_glycoprotein,C1836T,C to T,synonymous SNV,3142,1 -2.fastq,envelope_glycoprotein I613I,7484,36.25,I613I,envelope_glycoprotein,C1839T,C to T,synonymous SNV,3135,1 -2.fastq,envelope_glycoprotein C614C,7487,1.41,C614C,envelope_glycoprotein,C1842T,C to T,synonymous SNV,3118,1 -2.fastq,envelope_glycoprotein N617D,7494,98.92,N617D,envelope_glycoprotein,A1849G,A to G,complex,1212,1 -2.fastq,envelope_glycoprotein N617T,7495,100,N617T,envelope_glycoprotein,A1850C,A to C,complex,1201,1 -2.fastq,envelope_glycoprotein Y619H,7500,99.58,Y619H,envelope_glycoprotein,T1855C,T to C,complex,1185,1 -2.fastq,envelope_glycoprotein Y619S,7501,100,Y619S,envelope_glycoprotein,A1856C,A to C,complex,1185,1 -2.fastq,envelope_glycoprotein E622K,7509,18.31,E622K,envelope_glycoprotein,G1864A,G to A,complex,1150,1 -2.fastq,envelope_glycoprotein E622A,7510,100,E622A,envelope_glycoprotein,A1865C,A to C,complex,1139,1 -2.fastq,envelope_glycoprotein E622D,7511,100,E622D,envelope_glycoprotein,A1866T,A to T,complex,1139,1 -2.fastq,envelope_glycoprotein K627R,7525,4.72,K627R,envelope_glycoprotein,A1880G,A to G,nonsynonymous SNV,109,1 -2.fastq,envelope_glycoprotein K635N,7550,100,K635N,envelope_glycoprotein,A1905C,A to C,nonsynonymous SNV,277,1 -2.fastq,envelope_glycoprotein S646S,7583,98.72,S646S,envelope_glycoprotein,T1938C,T to C,synonymous SNV,156,1 -2.fastq,envelope_glycoprotein T650A,7593,5.17,T650A,envelope_glycoprotein,A1948G,A to G,complex,116,1 -2.fastq,envelope_glycoprotein T650S,7594,100,T650S,envelope_glycoprotein,C1949G,C to G,complex,103,1 -2.fastq,envelope_glycoprotein T651I,7597,100,T651I,envelope_glycoprotein,C1952T,C to T,complex,97,1 -2.fastq,envelope_glycoprotein T651T,7598,3.19,T651T,envelope_glycoprotein,A1953G,A to G,complex,94,1 -2.fastq,envelope_glycoprotein K654T,7606,96.88,K654T,envelope_glycoprotein,A1961C,A to C,complex,65,1 -2.fastq,envelope_glycoprotein K654N,7607,100,K654N,envelope_glycoprotein,G1962C,G to C,complex,65,1 -2.fastq,envelope_glycoprotein L655L,7610,100,L655L,envelope_glycoprotein,G1965A,G to A,synonymous SNV,64,1 -2.fastq,envelope_glycoprotein D658N,7617,100,D658N,envelope_glycoprotein,G1972A,G to A,complex,62,1 -2.fastq,envelope_glycoprotein D658A,7618,98.39,D658A,envelope_glycoprotein,A1973C,A to C,complex,62,1 -2.fastq,envelope_glycoprotein D658E,7619,98.39,D658E,envelope_glycoprotein,C1974A,C to A,complex,63,1 -2.fastq,envelope_glycoprotein Q660Q,7625,2.22,Q660Q,envelope_glycoprotein,A1980G,A to G,synonymous SNV,90,1 -2.fastq,envelope_glycoprotein T661N,7627,100,T661N,envelope_glycoprotein,C1982A,C to A,nonsynonymous SNV,90,1 -2.fastq,envelope_glycoprotein Q663Q,7634,96.97,Q663Q,envelope_glycoprotein,G1989A,G to A,synonymous SNV,99,1 -2.fastq,envelope_glycoprotein N665K,7640,100,N665K,envelope_glycoprotein,T1995G,T to G,nonsynonymous SNV,100,1 -2.fastq,envelope_glycoprotein K668Q,7647,100,K668Q,envelope_glycoprotein,A2002C,A to C,nonsynonymous SNV,99,1 -2.fastq,envelope_glycoprotein L671L,7656,100,L671L,envelope_glycoprotein,C2011T,C to T,complex,98,1 -2.fastq,envelope_glycoprotein L671L,7658,100,L671L,envelope_glycoprotein,A2013G,A to G,complex,98,1 -2.fastq,envelope_glycoprotein A672E,7660,100,A672E,envelope_glycoprotein,C2015A,C to A,nonsynonymous SNV,98,1 -2.fastq,envelope_glycoprotein D674D,7667,99.23,D674D,envelope_glycoprotein,C2022T,C to T,synonymous SNV,130,1 -2.fastq,envelope_glycoprotein N677D,7674,100,N677D,envelope_glycoprotein,A2029G,A to G,complex,142,1 -2.fastq,envelope_glycoprotein N677T,7675,99.27,N677T,envelope_glycoprotein,A2030C,A to C,complex,142,1 -2.fastq,envelope_glycoprotein N677K,7676,92.05,N677K,envelope_glycoprotein,C2031A,C to A,complex,153,1 -2.fastq,envelope_glycoprotein N678S,7678,98.56,N678S,envelope_glycoprotein,A2033G,A to G,nonsynonymous SNV,156,1 -2.fastq,envelope_glycoprotein L679L,7680,97.86,L679L,envelope_glycoprotein,C2035T,C to T,complex,141,1 -2.fastq,envelope_glycoprotein L679L,7682,96.36,L679L,envelope_glycoprotein,A2037G,A to G,complex,167,1 -2.fastq,envelope_glycoprotein N681S,7687,12.38,N681S,envelope_glycoprotein,A2042G,A to G,nonsynonymous SNV,1150,1 -2.fastq,envelope_glycoprotein N684D,7695,86.97,N684D,envelope_glycoprotein,A2050G,A to G,complex,1206,1 -2.fastq,envelope_glycoprotein N684S,7696,1.08,N684S,envelope_glycoprotein,A2051G,A to G,complex,1206,1 -2.fastq,envelope_glycoprotein N684N,7697,99.58,N684N,envelope_glycoprotein,T2052C,T to C,complex,1208,1 -2.fastq,envelope_glycoprotein T686S,7701,1.88,T686S,envelope_glycoprotein,A2056T,A to T,nonsynonymous SNV,2236,1 -2.fastq,envelope_glycoprotein N687H,7704,30.83,N687H,envelope_glycoprotein,A2059C,A to C,complex,2253,1 -2.fastq,envelope_glycoprotein N687S,7705,1.29,N687S,envelope_glycoprotein,A2060G,A to G,complex,2254,1 -2.fastq,envelope_glycoprotein N687N,7706,99.5,N687N,envelope_glycoprotein,T2061C,T to C,complex,2262,1 -2.fastq,envelope_glycoprotein L689L,7712,1.24,L689L,envelope_glycoprotein,G2067A,G to A,synonymous SNV,3948,1 -2.fastq,envelope_glycoprotein K693R,7723,21.13,K693R,envelope_glycoprotein,A2078G,A to G,complex,4091,1 -2.fastq,envelope_glycoprotein K693K,7724,98.16,K693K,envelope_glycoprotein,A2079G,A to G,complex,4095,1 -2.fastq,envelope_glycoprotein I699V,7740,99.65,I699V,envelope_glycoprotein,A2095G,A to G,nonsynonymous SNV,4549,1 -2.fastq,envelope_glycoprotein L702L,7751,1.3,L702L,envelope_glycoprotein,G2106A,G to A,synonymous SNV,4868,1 -2.fastq,envelope_glycoprotein I703V,7752,18.22,I703V,envelope_glycoprotein,A2107G,A to G,nonsynonymous SNV,4887,1 -2.fastq,envelope_glycoprotein L705F,7760,1.25,L705F,envelope_glycoprotein,A2115C,A to C,nonsynonymous SNV,4969,1 -2.fastq,envelope_glycoprotein I708V,7767,1.3,I708V,envelope_glycoprotein,A2122G,A to G,nonsynonymous SNV,4844,1 -2.fastq,envelope_glycoprotein A710T,7773,99.9,A710T,envelope_glycoprotein,G2128A,G to A,complex,3842,1 -2.fastq,envelope_glycoprotein A710V,7774,99.74,A710V,envelope_glycoprotein,C2129T,C to T,complex,3835,1 -2.fastq,envelope_glycoprotein V711M,7776,13.12,V711M,envelope_glycoprotein,G2131A,G to A,complex,3846,1 -2.fastq,envelope_glycoprotein V711V,7778,1.23,V711V,envelope_glycoprotein,G2133A,G to A,complex,3853,1 -2.fastq,envelope_glycoprotein I712L,7779,99.97,I712L,envelope_glycoprotein,A2134C,A to C,complex,3851,1 -2.fastq,envelope_glycoprotein I712I,7781,99.97,I712I,envelope_glycoprotein,A2136T,A to T,complex,3850,1 -2.fastq,envelope_glycoprotein S713S,7784,99.95,S713S,envelope_glycoprotein,C2139T,C to T,synonymous SNV,3873,1 -2.fastq,envelope_glycoprotein I714V,7785,99.87,I714V,envelope_glycoprotein,A2140G,A to G,nonsynonymous SNV,3884,1 -2.fastq,envelope_glycoprotein V715V,7790,100,V715V,envelope_glycoprotein,G2145A,G to A,synonymous SNV,3954,1 -2.fastq,envelope_glycoprotein Q720K,7803,99.96,Q720K,envelope_glycoprotein,C2158A,C to A,nonsynonymous SNV,4872,1 -2.fastq,envelope_glycoprotein P724P,7817,99.96,P724P,envelope_glycoprotein,T2172A,T to A,synonymous SNV,4688,1 -2.fastq,envelope_glycoprotein L725L,7820,99.85,L725L,envelope_glycoprotein,G2175A,G to A,synonymous SNV,4701,1 -2.fastq,envelope_glycoprotein S726S,7823,5.31,S726S,envelope_glycoprotein,G2178A,G to A,synonymous SNV,4728,1 -2.fastq,envelope_glycoprotein F727F,7826,99.91,F727F,envelope_glycoprotein,C2181T,C to T,synonymous SNV,4695,1 -2.fastq,envelope_glycoprotein L730R,7834,99.93,L730R,envelope_glycoprotein,T2189G,T to G,complex,4386,1 -2.fastq,envelope_glycoprotein L730L,7835,99.98,L730L,envelope_glycoprotein,T2190C,T to C,complex,4373,1 -2.fastq,envelope_glycoprotein I731L,7836,99.95,I731L,envelope_glycoprotein,A2191C,A to C,nonsynonymous SNV,4380,1 -2.fastq,envelope_glycoprotein N733T,7843,98.64,N733T,envelope_glycoprotein,A2198C,A to C,nonsynonymous SNV,5487,1 -2.fastq,envelope_glycoprotein P737P,7856,31.08,P737P,envelope_glycoprotein,C2211A,C to A,synonymous SNV,5617,1 -2.fastq,envelope_glycoprotein G738D,7858,99.64,G738D,envelope_glycoprotein,G2213A,G to A,nonsynonymous SNV,5553,1 -2.fastq,envelope_glycoprotein L740P,7864,99.72,L740P,envelope_glycoprotein,T2219C,T to C,complex,5452,1 -2.fastq,envelope_glycoprotein L740L,7865,1.41,L740L,envelope_glycoprotein,C2220A,C to A,complex,5457,1 -2.fastq,envelope_glycoprotein G741E,7867,99.78,G741E,envelope_glycoprotein,G2222A,G to A,nonsynonymous SNV,5437,1 -2.fastq,envelope_glycoprotein Q750E,7893,100,Q750E,envelope_glycoprotein,C2248G,C to G,nonsynonymous SNV,5023,1 -2.fastq,envelope_glycoprotein D751N,7896,24.39,D751N,envelope_glycoprotein,G2251A,G to A,nonsynonymous SNV,5028,1 -2.fastq,envelope_glycoprotein D753G,7903,99.68,D753G,envelope_glycoprotein,A2258G,A to G,nonsynonymous SNV,4070,1 -2.fastq,envelope_glycoprotein S754R,7907,99.98,S754R,envelope_glycoprotein,C2262A,C to A,nonsynonymous SNV,4043,1 -2.fastq,envelope_glycoprotein S755S,7910,98.75,S755S,envelope_glycoprotein,G2265A,G to A,synonymous SNV,4038,1 -2.fastq,envelope_glycoprotein I756S,7912,99.75,I756S,envelope_glycoprotein,T2267G,T to G,nonsynonymous SNV,4011,1 -2.fastq,envelope_glycoprotein S760G,7923,30.48,S760G,envelope_glycoprotein,A2278G,A to G,complex,4466,1 -2.fastq,envelope_glycoprotein S760N,7924,99.95,S760N,envelope_glycoprotein,G2279A,G to A,complex,4456,1 -2.fastq,envelope_glycoprotein S760S,7925,99.93,S760S,envelope_glycoprotein,C2280T,C to T,complex,4466,1 -2.fastq,envelope_glycoprotein A764A,7937,1.06,A764A,envelope_glycoprotein,A2292G,A to G,synonymous SNV,5046,1 -2.fastq,envelope_glycoprotein A766V,7942,99.94,A766V,envelope_glycoprotein,C2297T,C to T,nonsynonymous SNV,5012,1 -2.fastq,envelope_glycoprotein D769D,7952,82.76,D769D,envelope_glycoprotein,T2307C,T to C,synonymous SNV,5011,1 -2.fastq,envelope_glycoprotein R771R,7956,99.94,R771R,envelope_glycoprotein,C2311A,C to A,synonymous SNV,5001,1 -2.fastq,envelope_glycoprotein S772S,7961,4.78,S772S,envelope_glycoprotein,C2316T,C to T,synonymous SNV,4964,1 -2.fastq,envelope_glycoprotein L773L,7964,2.7,L773L,envelope_glycoprotein,G2319T,G to T,synonymous SNV,4916,1 -2.fastq,envelope_glycoprotein C774C,7967,1.47,C774C,envelope_glycoprotein,C2322T,C to T,synonymous SNV,4867,1 -2.fastq,envelope_glycoprotein L775L,7970,1.01,L775L,envelope_glycoprotein,C2325T,C to T,synonymous SNV,4820,1 -2.fastq,envelope_glycoprotein R780R,7985,99.95,R780R,envelope_glycoprotein,A2340C,A to C,synonymous SNV,3943,1 -2.fastq,envelope_glycoprotein R782S,7991,99.69,R782S,envelope_glycoprotein,A2346C,A to C,nonsynonymous SNV,3889,1 -2.fastq,nef_protein A53T,8403,4.95,A53T,nef_protein,G157A,G to A,nonsynonymous SNV,4242,1 -2.fastq,nef_protein Y54C,8407,99.98,Y54C,nef_protein,A161G,A to G,nonsynonymous SNV,4261,1 -2.fastq,nef_protein R56W,8412,99.98,R56W,nef_protein,A166T,A to T,nonsynonymous SNV,4299,1 -2.fastq,nef_protein P57L,8416,99.86,P57L,nef_protein,C170T,C to T,complex,4327,1 -2.fastq,nef_protein P57P,8417,1.63,P57P,nef_protein,A171G,A to G,complex,4483,1 -2.fastq,nef_protein V59A,8422,99.98,V59A,nef_protein,T176C,T to C,nonsynonymous SNV,4502,1 -2.fastq,nef_protein E62E,8432,4.01,E62E,nef_protein,G186A,G to A,synonymous SNV,4204,1 -2.fastq,nef_protein E65E,8441,5.49,E65E,nef_protein,A195G,A to G,synonymous SNV,425,1 -2.fastq,nef_protein V66V,8444,99.74,V66V,nef_protein,A198G,A to G,synonymous SNV,4652,1 -2.fastq,nef_protein R71K,8458,44.86,R71K,nef_protein,G212A,G to A,nonsynonymous SNV,5150,1 -2.fastq,nef_protein P72P,8462,99.96,P72P,nef_protein,A216T,A to T,synonymous SNV,5166,1 -2.fastq,nef_protein T80T,8486,1.12,T80T,nef_protein,T240A,T to A,synonymous SNV,5468,1 -2.fastq,nef_protein Y81F,8488,2.87,Y81F,nef_protein,A242T,A to T,complex,5387,1 -2.fastq,nef_protein Y81Y,8489,94.84,Y81Y,nef_protein,T243C,T to C,complex,4809,1 -2.fastq,nef_protein G83A,8494,99.98,G83A,nef_protein,G248C,G to C,nonsynonymous SNV,4763,1 -2.fastq,nef_protein A84A,8498,99.87,A84A,nef_protein,A252T,A to T,synonymous SNV,4742,1 -2.fastq,nef_protein F85V,8499,85.26,F85V,nef_protein,T253G,T to G,complex,4745,1 -2.fastq,nef_protein F85F,8501,99.56,F85F,nef_protein,C255T,C to T,complex,4747,1 -2.fastq,nef_protein D86D,8504,2.04,D86D,nef_protein,T258C,T to C,synonymous SNV,5163,1 -2.fastq,nef_protein L87L,8507,99.98,L87L,nef_protein,C261T,C to T,synonymous SNV,5150,1 -2.fastq,nef_protein D98E,8540,100,D98E,nef_protein,T294A,T to A,nonsynonymous SNV,3731,1 -2.fastq,nef_protein L100L,8544,99.02,L100L,nef_protein,T298C,T to C,synonymous SNV,3699,1 -2.fastq,nef_protein Y102H,8550,99.53,Y102H,nef_protein,T304C,T to C,nonsynonymous SNV,3628,1 -2.fastq,nef_protein S103S,8555,98.98,S103S,nef_protein,T309C,T to C,synonymous SNV,3162,1 -2.fastq,nef_protein K104Q,8556,99.26,K104Q,nef_protein,A310C,A to C,complex,3149,1 -2.fastq,nef_protein K104K,8558,5.35,K104K,nef_protein,G312A,G to A,complex,3132,1 -2.fastq,nef_protein K105E,8559,99.84,K105E,nef_protein,A313G,A to G,complex,3124,1 -2.fastq,nef_protein K105N,8561,83.87,K105N,nef_protein,A315T,A to T,complex,3133,1 -2.fastq,nef_protein R106R,8564,99.74,R106R,nef_protein,G318A,G to A,synonymous SNV,3146,1 -2.fastq,nef_protein E108D,8570,99.97,E108D,nef_protein,A324T,A to T,nonsynonymous SNV,3596,1 -2.fastq,nef_protein L112L,8580,98.77,L112L,nef_protein,T334C,T to C,synonymous SNV,3319,1 -2.fastq,nef_protein V114M,8586,23.54,V114M,nef_protein,G340A,G to A,complex,3177,1 -2.fastq,nef_protein V114V,8588,100,V114V,nef_protein,G342C,G to C,complex,3144,1 -2.fastq,nef_protein Y115Y,8591,99.17,Y115Y,nef_protein,T345C,T to C,synonymous SNV,3134,1 -2.fastq,nef_protein N116H,8592,99.94,N116H,nef_protein,A346C,A to C,nonsynonymous SNV,3133,1 -2.fastq,nef_protein F120Y,8605,99.92,F120Y,nef_protein,T359A,T to A,nonsynonymous SNV,3642,1 -2.fastq,nef_protein F121F,8609,99.72,F121F,nef_protein,T363C,T to C,synonymous SNV,3634,1 -2.fastq,nef_protein Q125Q,8621,99.48,Q125Q,nef_protein,A375G,A to G,synonymous SNV,3673,1 -2.fastq,nef_protein P129P,8633,99.79,P129P,nef_protein,G387A,G to A,synonymous SNV,3388,1 -2.fastq,nef_protein G130G,8636,99.44,G130G,nef_protein,A390G,A to G,synonymous SNV,3386,1 -2.fastq,nef_protein V133I,8643,21.44,V133I,nef_protein,G397A,G to A,nonsynonymous SNV,3360,1 -2.fastq,nef_protein Y135H,8649,93.59,Y135H,nef_protein,T403C,T to C,complex,3150,1 -2.fastq,nef_protein Y135F,8650,93.86,Y135F,nef_protein,A404T,A to T,complex,3137,1 -2.fastq,nef_protein F139L,8661,1.94,F139L,nef_protein,T415C,T to C,complex,3047,1 -2.fastq,nef_protein F139C,8662,3.04,F139C,nef_protein,T416G,T to G,complex,3022,1 -2.fastq,nef_protein L142F,8670,99.63,L142F,nef_protein,C424T,C to T,complex,1344,1 -2.fastq,nef_protein L142R,8671,100,L142R,nef_protein,T425G,T to G,complex,1344,1 -2.fastq,nef_protein Y143F,8674,100,Y143F,nef_protein,A428T,A to T,nonsynonymous SNV,1344,1 -2.fastq,nef_protein V146V,8684,99.31,V146V,nef_protein,G438A,G to A,synonymous SNV,1312,1 -2.fastq,nef_protein V148V,8690,2.5,V148V,nef_protein,T444A,T to A,synonymous SNV,1283,1 -2.fastq,pol_protein Y561X,3178,100,Y561X,pol_protein,C1683G,C to G,stopgain,3070,1 -2.fastq,pol_protein Q1000X,4493,99.96,Q1000X,pol_protein,C2998T,C to T,stopgain,2608,1 -2.fastq,tat_protein Q39X,5343,99.46,Q39X,tat_protein,C115T,C to T,stopgain,189,1 -2.fastq,envelope_glycoprotein W16X,5692,15.79,W16X,envelope_glycoprotein,G47A,G to A,stopgain,19,1 -2.fastq,envelope_glycoprotein S510X,7174,99.97,S510X,envelope_glycoprotein,C1529A,C to A,stopgain,6632,1 -2.fastq,envelope_glycoprotein K654X,7605,68.18,K654X,envelope_glycoprotein,A1960T,A to T,stopgain,67,1 -2.fastq,nef_protein Y135X,8651,1.61,Y135X,nef_protein,T405G,T to G,stopgain,3137,1 diff --git a/test_data/example_1_output/merged.csv b/test_data/example_1_output/merged.csv deleted file mode 100644 index f3b8f44..0000000 --- a/test_data/example_1_output/merged.csv +++ /dev/null @@ -1 +0,0 @@ -Sample,Amino Acid Change,Position,AF,Change,Protein,NucleotideChange,LetterChange,Syn,Depth,Passage diff --git a/test_data/example_1_output/reads.csv b/test_data/example_1_output/reads.csv deleted file mode 100644 index 28d2584..0000000 --- a/test_data/example_1_output/reads.csv +++ /dev/null @@ -1,2 +0,0 @@ -Example1_file1.fastq,20312,20312,100.00% -Example1_file2.fastq,8825,8825,100.00% diff --git a/test_data/example_1_output/vcf_files/Example1_file1.fastq.vcf b/test_data/example_1_output/vcf_files/Example1_file1.fastq.vcf deleted file mode 100644 index d43f5ac..0000000 --- a/test_data/example_1_output/vcf_files/Example1_file1.fastq.vcf +++ /dev/null @@ -1,15385 +0,0 @@ -##fileformat=VCFv4.1 -##source=VarScan2 -##INFO= -##INFO= -##INFO= -##INFO= -##INFO= -##INFO= -##FILTER= -##FILTER= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOR -Example1_ref 16 . G . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:4:4:0:0%:4,0,0,0 -Example1_ref 17 . A . PASS DP=6;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:3:3:0:0%:3,0,0,0 0/0:.:3:3:0:0%:3,0,0,0 -Example1_ref 18 . C . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:4:4:0:0%:4,0,0,0 -Example1_ref 19 . T . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:4:4:0:0%:4,0,0,0 -Example1_ref 20 . A . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:4:4:0:0%:4,0,0,0 -Example1_ref 21 . G . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:4:4:0:0%:4,0,0,0 -Example1_ref 22 . A . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:5:5:0:0%:4,1,0,0 -Example1_ref 23 . A . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:5:5:0:0%:4,1,0,0 -Example1_ref 24 . G GA . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=7.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:4:1:20%:4,0,0,1 0/0:.:5:4:1:20%:4,0,0,1 -Example1_ref 25 . G . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:5:5:0:0%:4,1,0,0 -Example1_ref 26 . T A . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=7.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:4:1:20%:4,0,0,1 0/0:.:5:4:1:20%:4,0,0,1 -Example1_ref 27 . C . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:5:5:0:0%:4,1,0,0 -Example1_ref 28 . A AG . PASS DP=12;SS=0;SSC=0;GPV=1E0;SPV=7.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:5:1:16.67%:5,0,0,1 0/0:.:6:5:1:16.67%:5,0,0,1 -Example1_ref 29 . A . PASS DP=12;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:6:6:0:0%:5,1,0,0 -Example1_ref 30 . G . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 31 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 32 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 33 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 34 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 35 . G . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 36 . G . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 37 . G . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 38 . A . PASS DP=12;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:6:6:0:0%:5,1,0,0 -Example1_ref 39 . G . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 40 . C . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 41 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 42 . C . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 43 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 44 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 45 . C . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 46 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 47 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 48 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 49 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 50 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 51 . C . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 52 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 53 . A . PASS DP=12;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:6:6:0:0%:5,1,0,0 -Example1_ref 54 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 55 . A . PASS DP=12;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:6:6:0:0%:5,1,0,0 -Example1_ref 56 . A . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:7:7:0:0%:6,1,0,0 -Example1_ref 57 . T . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:9:9:0:0%:8,1,0,0 -Example1_ref 58 . G . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:9:9:0:0%:8,1,0,0 -Example1_ref 59 . T . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:9:9:0:0%:8,1,0,0 -Example1_ref 60 . T . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:9:9:0:0%:8,1,0,0 -Example1_ref 61 . G . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:9:9:0:0%:8,1,0,0 -Example1_ref 62 . A . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:9:9:0:0%:8,1,0,0 -Example1_ref 63 . G . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:9:9:0:0%:8,1,0,0 -Example1_ref 64 . C . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:9,1,0,0 0/0:.:10:10:0:0%:9,1,0,0 -Example1_ref 65 . C . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:9,1,0,0 0/0:.:10:10:0:0%:9,1,0,0 -Example1_ref 66 . T . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:9,1,0,0 0/0:.:10:10:0:0%:9,1,0,0 -Example1_ref 67 . A . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:11,1,0,0 0/0:.:12:12:0:0%:11,1,0,0 -Example1_ref 68 . T . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:11,1,0,0 0/0:.:12:12:0:0%:11,1,0,0 -Example1_ref 69 . T . PASS DP=26;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:13:13:0:0%:11,2,0,0 0/0:.:13:13:0:0%:11,2,0,0 -Example1_ref 70 . T . PASS DP=26;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:13:13:0:0%:11,2,0,0 0/0:.:13:13:0:0%:11,2,0,0 -Example1_ref 71 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:14:14:0:0%:12,2,0,0 -Example1_ref 72 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:14:14:0:0%:12,2,0,0 -Example1_ref 73 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:14:14:0:0%:12,2,0,0 -Example1_ref 74 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:14:14:0:0%:12,2,0,0 -Example1_ref 75 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:14:14:0:0%:12,2,0,0 -Example1_ref 76 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:13,2,0,0 0/0:.:15:15:0:0%:13,2,0,0 -Example1_ref 77 . T . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:17:0:0%:13,4,0,0 0/0:.:17:17:0:0%:13,4,0,0 -Example1_ref 78 . T . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 79 . T . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 80 . A . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 81 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 82 . T . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 83 . G . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 84 . C . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 85 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 86 . C . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 87 . G . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:18:18:0:0%:12,6,0,0 -Example1_ref 88 . T . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 89 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 90 . G . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 91 . G . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 92 . C . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:18:18:0:0%:13,5,0,0 -Example1_ref 93 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 94 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 95 . G . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 96 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 97 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:17:0:0%:11,6,0,0 0/0:.:17:17:0:0%:11,6,0,0 -Example1_ref 98 . A . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:18:18:0:0%:12,6,0,0 -Example1_ref 99 . A . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:18:18:0:0%:12,6,0,0 -Example1_ref 100 . C . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 101 . A . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:18:18:0:0%:12,6,0,0 -Example1_ref 102 . T . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 103 . A . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 104 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 105 . C . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 106 . A . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 107 . A . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 108 . A . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:21:0:0%:14,7,0,0 0/0:.:21:21:0:0%:14,7,0,0 -Example1_ref 109 . A . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:21:0:0%:13,8,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 110 . T . PASS DP=44;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:14,8,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 111 . C . PASS DP=48;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:16,8,0,0 0/0:.:24:24:0:0%:16,8,0,0 -Example1_ref 112 . A . PASS DP=46;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:23:0:0%:16,7,0,0 0/0:.:23:23:0:0%:16,7,0,0 -Example1_ref 113 . G . PASS DP=46;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:23:0:0%:15,8,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 114 . C . PASS DP=48;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 115 . T . PASS DP=48;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 116 . G . PASS DP=48;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 117 . G . PASS DP=46;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:23:0:0%:15,8,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 118 . T . PASS DP=48;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:16,8,0,0 0/0:.:24:24:0:0%:16,8,0,0 -Example1_ref 119 . G . PASS DP=48;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 120 . G . PASS DP=52;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:26:26:0:0%:16,10,0,0 0/0:.:26:26:0:0%:16,10,0,0 -Example1_ref 121 . A . PASS DP=44;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:13,9,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 122 . G . PASS DP=54;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:27:0:0%:17,10,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 123 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:30:0:0%:19,11,0,0 0/0:.:30:30:0:0%:19,11,0,0 -Example1_ref 124 . T . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:19,12,0,0 0/0:.:31:31:0:0%:19,12,0,0 -Example1_ref 125 . A . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:19,13,0,0 0/0:.:32:32:0:0%:19,13,0,0 -Example1_ref 126 . T . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:19,12,0,0 0/0:.:31:31:0:0%:19,12,0,0 -Example1_ref 127 . C . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:19,12,0,0 0/0:.:31:31:0:0%:19,12,0,0 -Example1_ref 128 . A . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:19,13,0,0 0/0:.:32:32:0:0%:19,13,0,0 -Example1_ref 129 . T A . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=7.5362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:34:1:2.86%:20,14,0,1 0/0:.:35:34:1:2.86%:20,14,0,1 -Example1_ref 130 . C . PASS DP=66;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:33:33:0:0%:19,14,0,0 0/0:.:33:33:0:0%:19,14,0,0 -Example1_ref 131 . C . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:35:0:0%:20,15,0,0 0/0:.:35:35:0:0%:20,15,0,0 -Example1_ref 132 . C . PASS DP=68;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:34:34:0:0%:19,15,0,0 -Example1_ref 133 . T . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:35:0:0%:20,15,0,0 0/0:.:35:35:0:0%:20,15,0,0 -Example1_ref 134 . G . PASS DP=68;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:34:34:0:0%:19,15,0,0 -Example1_ref 135 . G . PASS DP=68;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:34:34:0:0%:19,15,0,0 -Example1_ref 136 . A . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:36:36:0:0%:20,16,0,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 137 . C . PASS DP=68;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:34:34:0:0%:19,15,0,0 -Example1_ref 138 . A . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:35:0:0%:20,15,0,0 0/0:.:35:35:0:0%:20,15,0,0 -Example1_ref 139 . G . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:38:38:0:0%:22,16,0,0 0/0:.:38:38:0:0%:22,16,0,0 -Example1_ref 140 . A . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:23,16,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 141 . A . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:37:37:0:0%:22,15,0,0 0/0:.:37:37:0:0%:22,15,0,0 -Example1_ref 142 . A . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:23,16,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 143 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:38:38:0:0%:23,15,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 144 . A . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:23,16,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 145 . T . PASS DP=82;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:41:41:0:0%:25,16,0,0 0/0:.:41:41:0:0%:25,16,0,0 -Example1_ref 146 . A . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:40:40:0:0%:24,16,0,0 0/0:.:40:40:0:0%:24,16,0,0 -Example1_ref 147 . C . PASS DP=82;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:41:41:0:0%:25,16,0,0 0/0:.:41:41:0:0%:25,16,0,0 -Example1_ref 148 . T . PASS DP=82;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:41:41:0:0%:25,16,0,0 0/0:.:41:41:0:0%:25,16,0,0 -Example1_ref 149 . G . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:25,14,0,0 0/0:.:39:39:0:0%:25,14,0,0 -Example1_ref 150 . T . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:42:42:0:0%:27,15,0,0 0/0:.:42:42:0:0%:27,15,0,0 -Example1_ref 151 . C . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:43:43:0:0%:29,14,0,0 0/0:.:43:43:0:0%:29,14,0,0 -Example1_ref 152 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:43:43:0:0%:27,16,0,0 0/0:.:43:43:0:0%:27,16,0,0 -Example1_ref 153 . C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:44:44:0:0%:30,14,0,0 0/0:.:44:44:0:0%:30,14,0,0 -Example1_ref 154 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:44:44:0:0%:29,15,0,0 0/0:.:44:44:0:0%:29,15,0,0 -Example1_ref 155 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:46:46:0:0%:30,16,0,0 -Example1_ref 156 . T . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:31,16,0,0 0/0:.:47:47:0:0%:31,16,0,0 -Example1_ref 157 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:45:45:0:0%:30,15,0,0 0/0:.:45:45:0:0%:30,15,0,0 -Example1_ref 158 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:46:46:0:0%:30,16,0,0 -Example1_ref 159 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:31,15,0,0 0/0:.:46:46:0:0%:31,15,0,0 -Example1_ref 160 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:46:46:0:0%:30,16,0,0 -Example1_ref 161 . G . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:46:46:0:0%:30,16,0,0 -Example1_ref 162 . C . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:50:50:0:0%:32,18,0,0 -Example1_ref 163 . T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:49:49:0:0%:32,17,0,0 0/0:.:49:49:0:0%:32,17,0,0 -Example1_ref 164 . C . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:50:50:0:0%:32,18,0,0 -Example1_ref 165 . T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:49:49:0:0%:32,17,0,0 0/0:.:49:49:0:0%:32,17,0,0 -Example1_ref 166 . T . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:50:50:0:0%:32,18,0,0 -Example1_ref 167 . G . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:48:48:0:0%:30,18,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 168 . G . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:50:50:0:0%:32,18,0,0 -Example1_ref 169 . A . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:32,22,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 170 . C . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:33,20,0,0 0/0:.:53:53:0:0%:33,20,0,0 -Example1_ref 171 . C . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:31,20,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 172 . G . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:34,21,0,0 0/0:.:55:55:0:0%:34,21,0,0 -Example1_ref 173 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:32,24,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 174 . C . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:34,23,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 175 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 176 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 177 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 178 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 179 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:36,29,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 180 . C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 181 . C A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=7.5194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:64:1:1.54%:35,29,1,0 0/0:.:65:64:1:1.54%:35,29,1,0 -Example1_ref 182 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 183 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 184 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:62:62:0:0%:34,28,0,0 -Example1_ref 185 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:36,29,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 186 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 187 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 188 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 189 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 190 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:36,29,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 191 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 192 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 193 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:34,31,0,0 0/0:.:65:65:0:0%:34,31,0,0 -Example1_ref 194 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:31,31,0,0 0/0:.:62:62:0:0%:31,31,0,0 -Example1_ref 195 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:34,31,0,0 0/0:.:65:65:0:0%:34,31,0,0 -Example1_ref 196 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 197 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 198 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:33,31,0,0 0/0:.:64:64:0:0%:33,31,0,0 -Example1_ref 199 . G . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:31,30,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 200 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 201 . C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 202 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:34,31,0,0 0/0:.:65:65:0:0%:34,31,0,0 -Example1_ref 203 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 204 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 205 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 206 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 207 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 208 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 209 . C . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:38,32,0,0 0/0:.:70:70:0:0%:38,32,0,0 -Example1_ref 210 . T . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:37,30,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 211 . T . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:38,31,0,0 0/0:.:69:69:0:0%:38,31,0,0 -Example1_ref 212 . C . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:37,31,0,0 0/0:.:68:68:0:0%:37,31,0,0 -Example1_ref 213 . T . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:39,30,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 214 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 215 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 216 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 217 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 218 . C . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 219 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 220 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:38,32,0,0 0/0:.:70:70:0:0%:38,32,0,0 -Example1_ref 221 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 222 . C . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:40,29,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 223 . T . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:37,32,0,0 0/0:.:69:69:0:0%:37,32,0,0 -Example1_ref 224 . C . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 225 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:40,32,0,0 0/0:.:72:72:0:0%:40,32,0,0 -Example1_ref 226 . T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:41,31,0,0 0/0:.:72:72:0:0%:41,31,0,0 -Example1_ref 227 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:74:74:0:0%:41,33,0,0 -Example1_ref 228 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 229 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 230 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 231 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 232 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:45,33,0,0 0/0:.:78:78:0:0%:45,33,0,0 -Example1_ref 233 . G . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 234 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 235 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:45,34,0,0 0/0:.:79:79:0:0%:45,34,0,0 -Example1_ref 236 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:45,34,0,0 0/0:.:79:79:0:0%:45,34,0,0 -Example1_ref 237 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 238 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:45,34,0,0 0/0:.:79:79:0:0%:45,34,0,0 -Example1_ref 239 . G . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 240 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:45,33,0,0 0/0:.:78:78:0:0%:45,33,0,0 -Example1_ref 241 . G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:45,35,0,0 0/0:.:80:80:0:0%:45,35,0,0 -Example1_ref 242 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:45,35,0,0 0/0:.:80:80:0:0%:45,35,0,0 -Example1_ref 243 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:47,35,0,0 0/0:.:82:82:0:0%:47,35,0,0 -Example1_ref 244 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:46,35,0,0 0/0:.:81:81:0:0%:46,35,0,0 -Example1_ref 245 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:46,35,0,0 0/0:.:81:81:0:0%:46,35,0,0 -Example1_ref 246 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:47,36,0,0 0/0:.:83:83:0:0%:47,36,0,0 -Example1_ref 247 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:45,35,0,0 0/0:.:80:80:0:0%:45,35,0,0 -Example1_ref 248 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:46,36,0,0 0/0:.:82:82:0:0%:46,36,0,0 -Example1_ref 249 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:45,37,0,0 0/0:.:82:82:0:0%:45,37,0,0 -Example1_ref 250 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:46,39,0,0 0/0:.:85:85:0:0%:46,39,0,0 -Example1_ref 251 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:84:84:0:0%:45,39,0,0 -Example1_ref 252 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:46,39,0,0 0/0:.:85:85:0:0%:46,39,0,0 -Example1_ref 253 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:43,40,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 254 . C . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:43,37,0,0 0/0:.:80:80:0:0%:43,37,0,0 -Example1_ref 255 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 256 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:42,40,0,0 0/0:.:82:82:0:0%:42,40,0,0 -Example1_ref 257 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:41,39,0,0 0/0:.:80:80:0:0%:41,39,0,0 -Example1_ref 258 . G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:41,39,0,0 0/0:.:80:80:0:0%:41,39,0,0 -Example1_ref 259 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:41,38,0,0 0/0:.:79:79:0:0%:41,38,0,0 -Example1_ref 260 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:42,40,0,0 0/0:.:82:82:0:0%:42,40,0,0 -Example1_ref 261 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:42,39,0,0 0/0:.:81:81:0:0%:42,39,0,0 -Example1_ref 262 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:41,40,0,0 0/0:.:81:81:0:0%:41,40,0,0 -Example1_ref 263 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:84:84:0:0%:45,39,0,0 -Example1_ref 264 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:46,40,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 265 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:47,39,0,0 0/0:.:86:86:0:0%:47,39,0,0 -Example1_ref 266 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:45,37,0,0 0/0:.:82:82:0:0%:45,37,0,0 -Example1_ref 267 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:45,36,0,0 0/0:.:81:81:0:0%:45,36,0,0 -Example1_ref 268 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:45,36,0,0 0/0:.:81:81:0:0%:45,36,0,0 -Example1_ref 269 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:84:84:0:0%:45,39,0,0 -Example1_ref 270 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:48,38,0,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 271 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:51,36,0,0 0/0:.:87:87:0:0%:51,36,0,0 -Example1_ref 272 . G T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=6.8961E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:88:2:2.22%:49,39,2,0 0/0:.:90:88:2:2.22%:49,39,2,0 -Example1_ref 273 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:53,38,0,0 0/0:.:91:91:0:0%:53,38,0,0 -Example1_ref 274 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:51,37,0,0 0/0:.:88:88:0:0%:51,37,0,0 -Example1_ref 275 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:54,37,0,0 0/0:.:91:91:0:0%:54,37,0,0 -Example1_ref 276 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:58,37,0,0 0/0:.:95:95:0:0%:58,37,0,0 -Example1_ref 277 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:59,40,0,0 0/0:.:99:99:0:0%:59,40,0,0 -Example1_ref 278 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:59,40,0,0 0/0:.:99:99:0:0%:59,40,0,0 -Example1_ref 279 . T C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.5128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:57,40,1,0 0/0:.:98:97:1:1.02%:57,40,1,0 -Example1_ref 280 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:59,41,0,0 0/0:.:100:100:0:0%:59,41,0,0 -Example1_ref 281 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:59,38,0,0 0/0:.:97:97:0:0%:59,38,0,0 -Example1_ref 282 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 283 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:63,40,0,0 0/0:.:103:103:0:0%:63,40,0,0 -Example1_ref 284 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:66,43,0,0 0/0:.:109:109:0:0%:66,43,0,0 -Example1_ref 285 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:63,38,0,0 0/0:.:101:101:0:0%:63,38,0,0 -Example1_ref 286 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:64,43,0,0 0/0:.:107:107:0:0%:64,43,0,0 -Example1_ref 287 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:65,44,0,0 0/0:.:109:109:0:0%:65,44,0,0 -Example1_ref 288 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:66,42,0,0 0/0:.:108:108:0:0%:66,42,0,0 -Example1_ref 289 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:64,46,0,0 0/0:.:110:110:0:0%:64,46,0,0 -Example1_ref 290 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:66,45,0,0 0/0:.:111:111:0:0%:66,45,0,0 -Example1_ref 291 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:67,42,0,0 0/0:.:109:109:0:0%:67,42,0,0 -Example1_ref 292 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:69,44,0,0 0/0:.:113:113:0:0%:69,44,0,0 -Example1_ref 293 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:113:113:0:0%:67,46,0,0 -Example1_ref 294 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:69,47,0,0 0/0:.:116:116:0:0%:69,47,0,0 -Example1_ref 295 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:123:123:0:0%:75,48,0,0 -Example1_ref 296 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:120:120:0:0%:73,47,0,0 -Example1_ref 297 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:118:118:0:0%:73,45,0,0 -Example1_ref 298 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:73,46,0,0 0/0:.:119:119:0:0%:73,46,0,0 -Example1_ref 299 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:75,49,0,0 0/0:.:124:124:0:0%:75,49,0,0 -Example1_ref 300 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:75,49,0,0 0/0:.:124:124:0:0%:75,49,0,0 -Example1_ref 301 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:74,46,0,0 0/0:.:120:120:0:0%:74,46,0,0 -Example1_ref 302 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:78,48,0,0 0/0:.:126:126:0:0%:78,48,0,0 -Example1_ref 303 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:78,48,0,0 0/0:.:126:126:0:0%:78,48,0,0 -Example1_ref 304 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:125:125:0:0%:76,49,0,0 -Example1_ref 305 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:0:0%:77,48,0,0 0/0:.:126:125:0:0%:77,48,0,0 -Example1_ref 306 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:123:123:0:0%:75,48,0,0 -Example1_ref 307 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:75,46,0,0 0/0:.:121:121:0:0%:75,46,0,0 -Example1_ref 308 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:78,47,0,0 0/0:.:125:125:0:0%:78,47,0,0 -Example1_ref 309 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:78,45,0,0 0/0:.:123:123:0:0%:78,45,0,0 -Example1_ref 310 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:80,41,0,0 0/0:.:121:121:0:0%:80,41,0,0 -Example1_ref 311 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:80,48,0,0 0/0:.:129:128:0:0%:80,48,0,0 -Example1_ref 312 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:77,49,0,0 0/0:.:126:126:0:0%:77,49,0,0 -Example1_ref 313 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:79,45,0,0 0/0:.:124:124:0:0%:79,45,0,0 -Example1_ref 314 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:129:129:0:0%:78,51,0,0 -Example1_ref 315 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:127:127:0:0%:77,50,0,0 -Example1_ref 316 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:130:130:0:0%:79,51,0,0 -Example1_ref 317 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:128:128:0:0%:78,50,0,0 -Example1_ref 318 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:130:130:0:0%:79,51,0,0 -Example1_ref 319 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:128:128:0:0%:78,50,0,0 -Example1_ref 320 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:128:128:0:0%:78,50,0,0 -Example1_ref 321 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:78,48,0,0 0/0:.:126:126:0:0%:78,48,0,0 -Example1_ref 322 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:127:127:0:0%:77,50,0,0 -Example1_ref 323 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:79,49,0,0 0/0:.:128:128:0:0%:79,49,0,0 -Example1_ref 324 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:125:125:0:0%:76,49,0,0 -Example1_ref 325 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:79,49,0,0 0/0:.:128:128:0:0%:79,49,0,0 -Example1_ref 326 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:127:127:0:0%:77,50,0,0 -Example1_ref 327 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:79,49,0,0 0/0:.:128:128:0:0%:79,49,0,0 -Example1_ref 328 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:124:124:0:0%:74,50,0,0 -Example1_ref 329 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:128:128:0:0%:78,50,0,0 -Example1_ref 330 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:81,49,0,0 0/0:.:130:130:0:0%:81,49,0,0 -Example1_ref 331 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:81,50,0,0 0/0:.:131:131:0:0%:81,50,0,0 -Example1_ref 332 . A T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:79,49,0,1 0/0:.:129:128:1:0.78%:79,49,0,1 -Example1_ref 333 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:80,51,0,0 0/0:.:131:131:0:0%:80,51,0,0 -Example1_ref 334 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:80,49,0,0 0/0:.:129:129:0:0%:80,49,0,0 -Example1_ref 335 . G T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:76,49,1,0 0/0:.:126:125:1:0.79%:76,49,1,0 -Example1_ref 336 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:126:126:0:0%:76,50,0,0 -Example1_ref 337 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:129:129:0:0%:78,51,0,0 -Example1_ref 338 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:80,51,0,0 0/0:.:131:131:0:0%:80,51,0,0 -Example1_ref 339 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:79,52,0,0 0/0:.:131:131:0:0%:79,52,0,0 -Example1_ref 340 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:84,51,0,0 0/0:.:135:135:0:0%:84,51,0,0 -Example1_ref 341 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:82,51,0,0 0/0:.:133:133:0:0%:82,51,0,0 -Example1_ref 342 . T A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:132:1:0.75%:83,49,1,0 0/0:.:134:132:1:0.75%:83,49,1,0 -Example1_ref 343 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:130:0:0%:81,49,0,0 0/0:.:132:130:0:0%:81,49,0,0 -Example1_ref 344 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:134:0:0%:83,51,0,0 0/0:.:136:134:0:0%:83,51,0,0 -Example1_ref 345 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:133:0:0%:82,51,0,0 0/0:.:135:133:0:0%:82,51,0,0 -Example1_ref 346 . G GCTGTCTCT . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=7.5091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:84,53,1,0 0/0:.:138:137:1:0.72%:84,53,1,0 -Example1_ref 347 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:84,52,0,0 0/0:.:136:136:0:0%:84,52,0,0 -Example1_ref 348 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:138:138:0:0%:86,52,0,0 -Example1_ref 349 . T TAAGAGACAG . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=7.5091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:87,50,0,1 0/0:.:138:137:1:0.72%:87,50,0,1 -Example1_ref 350 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:93,53,0,0 0/0:.:146:146:0:0%:93,53,0,0 -Example1_ref 351 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:146:146:0:0%:94,52,0,0 -Example1_ref 352 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:92,49,0,0 0/0:.:141:141:0:0%:92,49,0,0 -Example1_ref 353 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:91,52,0,0 0/0:.:143:143:0:0%:91,52,0,0 -Example1_ref 354 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:94,53,0,0 0/0:.:147:147:0:0%:94,53,0,0 -Example1_ref 355 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:96,51,0,0 0/0:.:147:147:0:0%:96,51,0,0 -Example1_ref 356 . T TAAGAG . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:95,53,0,1 0/0:.:149:148:1:0.67%:95,53,0,1 -Example1_ref 357 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:101,52,0,0 0/0:.:153:153:0:0%:101,52,0,0 -Example1_ref 358 . C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:100,53,0,0 0/0:.:153:153:0:0%:100,53,0,0 -Example1_ref 359 . AT A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:1:0.66%:102,48,0,1 0/0:.:151:150:1:0.66%:102,48,0,1 -Example1_ref 360 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:0:0%:101,49,0,0 0/0:.:151:150:0:0%:101,49,0,0 -Example1_ref 361 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:100,49,0,0 0/0:.:149:149:0:0%:100,49,0,0 -Example1_ref 362 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:100,47,0,0 0/0:.:147:147:0:0%:100,47,0,0 -Example1_ref 363 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:102,50,0,0 0/0:.:152:152:0:0%:102,50,0,0 -Example1_ref 364 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:104,51,0,0 0/0:.:155:155:0:0%:104,51,0,0 -Example1_ref 365 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:103,51,0,0 0/0:.:154:154:0:0%:103,51,0,0 -Example1_ref 366 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:98,52,0,0 0/0:.:150:150:0:0%:98,52,0,0 -Example1_ref 367 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:101,52,0,0 0/0:.:153:153:0:0%:101,52,0,0 -Example1_ref 368 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:102,54,0,0 0/0:.:156:156:0:0%:102,54,0,0 -Example1_ref 369 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:101,55,0,0 0/0:.:156:156:0:0%:101,55,0,0 -Example1_ref 370 . A G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:99,54,0,1 0/0:.:154:153:1:0.65%:99,54,0,1 -Example1_ref 371 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:105,55,0,0 0/0:.:160:160:0:0%:105,55,0,0 -Example1_ref 372 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:105,56,0,0 0/0:.:161:161:0:0%:105,56,0,0 -Example1_ref 373 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:109,53,0,0 0/0:.:162:162:0:0%:109,53,0,0 -Example1_ref 374 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:109,55,0,0 0/0:.:164:164:0:0%:109,55,0,0 -Example1_ref 375 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:109,57,0,0 0/0:.:166:166:0:0%:109,57,0,0 -Example1_ref 376 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:109,57,0,0 0/0:.:166:166:0:0%:109,57,0,0 -Example1_ref 377 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:110,58,0,0 0/0:.:168:168:0:0%:110,58,0,0 -Example1_ref 378 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:108,59,0,0 0/0:.:167:167:0:0%:108,59,0,0 -Example1_ref 379 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:107,60,0,0 0/0:.:167:167:0:0%:107,60,0,0 -Example1_ref 380 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:106,66,0,0 0/0:.:172:172:0:0%:106,66,0,0 -Example1_ref 381 . G T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:107,70,1,0 0/0:.:178:177:1:0.56%:107,70,1,0 -Example1_ref 382 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:107,72,0,0 0/0:.:179:179:0:0%:107,72,0,0 -Example1_ref 383 . C T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:108,68,1,0 0/0:.:177:176:1:0.56%:108,68,1,0 -Example1_ref 384 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:109,73,0,0 0/0:.:182:182:0:0%:109,73,0,0 -Example1_ref 385 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:110,72,0,0 0/0:.:182:182:0:0%:110,72,0,0 -Example1_ref 386 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:108,72,0,0 0/0:.:180:180:0:0%:108,72,0,0 -Example1_ref 387 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:107,73,0,0 0/0:.:180:180:0:0%:107,73,0,0 -Example1_ref 388 . G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:112,74,0,0 0/0:.:186:186:0:0%:112,74,0,0 -Example1_ref 389 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:116,74,0,0 0/0:.:190:190:0:0%:116,74,0,0 -Example1_ref 390 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:113,77,0,0 0/0:.:190:190:0:0%:113,77,0,0 -Example1_ref 391 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:112,77,0,0 0/0:.:189:189:0:0%:112,77,0,0 -Example1_ref 392 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:114,78,0,0 0/0:.:192:192:0:0%:114,78,0,0 -Example1_ref 393 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:189:189:0:0%:111,78,0,0 -Example1_ref 394 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:108,79,0,0 0/0:.:187:187:0:0%:108,79,0,0 -Example1_ref 395 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:189:189:0:0%:111,78,0,0 -Example1_ref 396 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:109,79,0,0 0/0:.:188:188:0:0%:109,79,0,0 -Example1_ref 397 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:112,79,0,0 0/0:.:191:191:0:0%:112,79,0,0 -Example1_ref 398 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:109,78,0,0 0/0:.:187:187:0:0%:109,78,0,0 -Example1_ref 399 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:105,75,0,0 0/0:.:180:180:0:0%:105,75,0,0 -Example1_ref 400 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:108,83,0,0 0/0:.:191:191:0:0%:108,83,0,0 -Example1_ref 401 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:110,83,0,0 0/0:.:193:193:0:0%:110,83,0,0 -Example1_ref 402 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:112,84,0,0 0/0:.:196:196:0:0%:112,84,0,0 -Example1_ref 403 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:111,83,0,0 0/0:.:194:194:0:0%:111,83,0,0 -Example1_ref 404 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:113,85,0,0 0/0:.:198:198:0:0%:113,85,0,0 -Example1_ref 405 . T C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:115,82,1,0 0/0:.:198:197:1:0.51%:115,82,1,0 -Example1_ref 406 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:116,86,0,0 0/0:.:202:202:0:0%:116,86,0,0 -Example1_ref 407 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:116,86,0,0 0/0:.:202:202:0:0%:116,86,0,0 -Example1_ref 408 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:118,86,0,0 0/0:.:204:204:0:0%:118,86,0,0 -Example1_ref 409 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:116,87,0,0 0/0:.:203:203:0:0%:116,87,0,0 -Example1_ref 410 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:116,87,0,0 0/0:.:203:203:0:0%:116,87,0,0 -Example1_ref 411 . C . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:118,79,0,0 0/0:.:197:197:0:0%:118,79,0,0 -Example1_ref 412 . G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:114,87,0,0 0/0:.:201:201:0:0%:114,87,0,0 -Example1_ref 413 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:120,88,0,0 0/0:.:208:208:0:0%:120,88,0,0 -Example1_ref 414 . G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:117,87,0,0 0/0:.:204:204:0:0%:117,87,0,0 -Example1_ref 415 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:119,84,0,0 0/0:.:203:203:0:0%:119,84,0,0 -Example1_ref 416 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:120,87,0,0 0/0:.:207:207:0:0%:120,87,0,0 -Example1_ref 417 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:119,86,0,0 0/0:.:205:205:0:0%:119,86,0,0 -Example1_ref 418 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:121,88,0,0 0/0:.:209:209:0:0%:121,88,0,0 -Example1_ref 419 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:122,90,0,0 0/0:.:212:212:0:0%:122,90,0,0 -Example1_ref 420 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:123,91,0,0 0/0:.:214:214:0:0%:123,91,0,0 -Example1_ref 421 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:124,90,0,0 0/0:.:214:214:0:0%:124,90,0,0 -Example1_ref 422 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:133,90,0,0 0/0:.:223:223:0:0%:133,90,0,0 -Example1_ref 423 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:133,91,0,0 0/0:.:224:224:0:0%:133,91,0,0 -Example1_ref 424 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:135,95,0,0 0/0:.:230:230:0:0%:135,95,0,0 -Example1_ref 425 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:136,92,0,0 0/0:.:228:228:0:0%:136,92,0,0 -Example1_ref 426 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:140,98,0,0 0/0:.:238:238:0:0%:140,98,0,0 -Example1_ref 427 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:234:234:0:0%:140,94,0,0 -Example1_ref 428 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:137,97,0,0 0/0:.:234:234:0:0%:137,97,0,0 -Example1_ref 429 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:137,97,0,0 0/0:.:234:234:0:0%:137,97,0,0 -Example1_ref 430 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:137,97,0,0 0/0:.:234:234:0:0%:137,97,0,0 -Example1_ref 431 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:139,99,0,0 0/0:.:238:238:0:0%:139,99,0,0 -Example1_ref 432 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:140,99,0,0 0/0:.:239:239:0:0%:140,99,0,0 -Example1_ref 433 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:139,95,0,0 0/0:.:234:234:0:0%:139,95,0,0 -Example1_ref 434 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:141,99,0,0 0/0:.:240:240:0:0%:141,99,0,0 -Example1_ref 435 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:142,96,0,0 0/0:.:238:238:0:0%:142,96,0,0 -Example1_ref 436 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:142,98,0,0 0/0:.:240:240:0:0%:142,98,0,0 -Example1_ref 437 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:141,99,0,0 0/0:.:240:240:0:0%:141,99,0,0 -Example1_ref 438 . C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:141,96,0,0 0/0:.:237:237:0:0%:141,96,0,0 -Example1_ref 439 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:141,96,0,0 0/0:.:237:237:0:0%:141,96,0,0 -Example1_ref 440 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:234:234:0:0%:140,94,0,0 -Example1_ref 441 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:136,95,0,0 0/0:.:231:231:0:0%:136,95,0,0 -Example1_ref 442 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:234:234:0:0%:140,94,0,0 -Example1_ref 443 . T C . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:139,96,1,0 0/0:.:236:235:1:0.42%:139,96,1,0 -Example1_ref 444 . G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:139,93,0,0 0/0:.:232:232:0:0%:139,93,0,0 -Example1_ref 445 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:143,97,0,0 0/0:.:240:240:0:0%:143,97,0,0 -Example1_ref 446 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:138,98,0,0 0/0:.:236:236:0:0%:138,98,0,0 -Example1_ref 447 . T TA . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:138,97,1,0 0/0:.:236:235:1:0.42%:138,97,1,0 -Example1_ref 448 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:143,98,0,0 0/0:.:241:241:0:0%:143,98,0,0 -Example1_ref 449 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:140,98,0,0 0/0:.:238:238:0:0%:140,98,0,0 -Example1_ref 450 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:144,95,0,0 0/0:.:239:239:0:0%:144,95,0,0 -Example1_ref 451 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:141,98,0,0 0/0:.:239:239:0:0%:141,98,0,0 -Example1_ref 452 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:138,100,0,0 0/0:.:238:238:0:0%:138,100,0,0 -Example1_ref 453 . G T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:138,100,1,0 0/0:.:239:238:1:0.42%:138,100,1,0 -Example1_ref 454 . A T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:138,101,1,0 0/0:.:240:239:1:0.42%:138,101,1,0 -Example1_ref 455 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:139,102,0,0 0/0:.:241:241:0:0%:139,102,0,0 -Example1_ref 456 . G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:140,102,0,0 0/0:.:242:242:0:0%:140,102,0,0 -Example1_ref 457 . T A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:142,98,0,1 0/0:.:241:240:1:0.41%:142,98,0,1 -Example1_ref 458 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:137,98,0,0 0/0:.:235:235:0:0%:137,98,0,0 -Example1_ref 459 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:140,98,0,0 0/0:.:238:238:0:0%:140,98,0,0 -Example1_ref 460 . C A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:135,96,0,1 0/0:.:232:231:1:0.43%:135,96,0,1 -Example1_ref 461 . C A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:132,94,0,1 0/0:.:227:226:1:0.44%:132,94,0,1 -Example1_ref 462 . TG T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:231:1:0.43%:133,98,0,1 0/0:.:233:231:1:0.43%:133,98,0,1 -Example1_ref 463 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:132,99,0,0 0/0:.:231:231:0:0%:132,99,0,0 -Example1_ref 464 . G T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:130,100,1,0 0/0:.:231:230:1:0.43%:130,100,1,0 -Example1_ref 465 . AT A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:126,103,1,0 0/0:.:230:229:1:0.43%:126,103,1,0 -Example1_ref 466 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:128,100,0,0 0/0:.:228:228:0:0%:128,100,0,0 -Example1_ref 467 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:122,97,0,0 0/0:.:219:219:0:0%:122,97,0,0 -Example1_ref 468 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:129,99,0,0 0/0:.:228:228:0:0%:129,99,0,0 -Example1_ref 469 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:129,101,0,0 0/0:.:230:230:0:0%:129,101,0,0 -Example1_ref 470 . G . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:129,101,0,0 0/0:.:230:230:0:0%:129,101,0,0 -Example1_ref 471 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:128,100,0,0 0/0:.:228:228:0:0%:128,100,0,0 -Example1_ref 472 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:126,98,0,0 0/0:.:224:224:0:0%:126,98,0,0 -Example1_ref 473 . C T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:123,97,1,0 0/0:.:221:220:1:0.45%:123,97,1,0 -Example1_ref 474 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:124,103,0,0 0/0:.:227:227:0:0%:124,103,0,0 -Example1_ref 475 . G . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:126,100,0,0 0/0:.:226:226:0:0%:126,100,0,0 -Example1_ref 476 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:118,103,0,0 0/0:.:221:221:0:0%:118,103,0,0 -Example1_ref 477 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:123,103,0,0 0/0:.:226:226:0:0%:123,103,0,0 -Example1_ref 478 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:123,104,0,0 0/0:.:227:227:0:0%:123,104,0,0 -Example1_ref 479 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:123,102,0,0 0/0:.:225:225:0:0%:123,102,0,0 -Example1_ref 480 . C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:126,97,0,0 0/0:.:223:223:0:0%:126,97,0,0 -Example1_ref 481 . T G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:122,99,0,1 0/0:.:222:221:1:0.45%:122,99,0,1 -Example1_ref 482 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:0:0%:123,101,0,0 0/0:.:225:224:0:0%:123,101,0,0 -Example1_ref 483 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:126,102,0,0 0/0:.:228:228:0:0%:126,102,0,0 -Example1_ref 484 . G . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:122,106,0,0 0/0:.:228:228:0:0%:122,106,0,0 -Example1_ref 485 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:123,107,0,0 0/0:.:230:230:0:0%:123,107,0,0 -Example1_ref 486 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:120,105,0,0 0/0:.:225:225:0:0%:120,105,0,0 -Example1_ref 487 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:115,104,0,0 0/0:.:219:219:0:0%:115,104,0,0 -Example1_ref 488 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:217:217:0:0%:116,101,0,0 -Example1_ref 489 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:117,104,0,0 0/0:.:221:221:0:0%:117,104,0,0 -Example1_ref 490 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:116,104,0,0 0/0:.:220:220:0:0%:116,104,0,0 -Example1_ref 491 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:216:216:0:0%:113,103,0,0 -Example1_ref 492 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:218:218:0:0%:114,104,0,0 -Example1_ref 493 . C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:116,99,0,0 0/0:.:215:215:0:0%:116,99,0,0 -Example1_ref 494 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:112,104,0,0 0/0:.:216:216:0:0%:112,104,0,0 -Example1_ref 495 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:209:209:0:0%:109,100,0,0 -Example1_ref 496 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:113,107,0,0 0/0:.:220:220:0:0%:113,107,0,0 -Example1_ref 497 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:113,106,0,0 0/0:.:219:219:0:0%:113,106,0,0 -Example1_ref 498 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:110,103,0,0 0/0:.:213:213:0:0%:110,103,0,0 -Example1_ref 499 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:114,105,0,0 0/0:.:219:219:0:0%:114,105,0,0 -Example1_ref 500 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:112,103,0,0 0/0:.:215:215:0:0%:112,103,0,0 -Example1_ref 501 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:115,106,0,0 0/0:.:221:221:0:0%:115,106,0,0 -Example1_ref 502 . C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:115,103,0,0 0/0:.:218:218:0:0%:115,103,0,0 -Example1_ref 503 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:216:216:0:0%:113,103,0,0 -Example1_ref 504 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:112,103,0,0 0/0:.:215:215:0:0%:112,103,0,0 -Example1_ref 505 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:218:218:0:0%:114,104,0,0 -Example1_ref 506 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:113,99,0,0 0/0:.:212:212:0:0%:113,99,0,0 -Example1_ref 507 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:110,96,0,0 0/0:.:206:206:0:0%:110,96,0,0 -Example1_ref 508 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:110,106,0,0 0/0:.:216:216:0:0%:110,106,0,0 -Example1_ref 509 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:114,107,0,0 0/0:.:221:221:0:0%:114,107,0,0 -Example1_ref 510 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:114,105,0,0 0/0:.:219:219:0:0%:114,105,0,0 -Example1_ref 511 . A C . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:218:1:0.46%:113,105,1,0 0/0:.:220:218:1:0.46%:113,105,1,0 -Example1_ref 512 . A C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:113,107,1,0 0/0:.:221:220:1:0.45%:113,107,1,0 -Example1_ref 513 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:118,105,0,0 0/0:.:223:223:0:0%:118,105,0,0 -Example1_ref 514 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:116,107,0,0 0/0:.:223:223:0:0%:116,107,0,0 -Example1_ref 515 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:113,108,0,0 0/0:.:221:221:0:0%:113,108,0,0 -Example1_ref 516 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:112,107,0,0 0/0:.:219:219:0:0%:112,107,0,0 -Example1_ref 517 . A G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:110,107,0,1 0/0:.:218:217:1:0.46%:110,107,0,1 -Example1_ref 518 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:113,108,0,0 0/0:.:221:221:0:0%:113,108,0,0 -Example1_ref 519 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:114,107,0,0 0/0:.:221:221:0:0%:114,107,0,0 -Example1_ref 520 . C A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=6.8837E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:215:2:0.92%:109,106,0,2 0/0:.:217:215:2:0.92%:109,106,0,2 -Example1_ref 521 . CT C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:111,107,0,1 0/0:.:219:218:1:0.46%:111,107,0,1 -Example1_ref 522 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:114,103,0,0 0/0:.:217:217:0:0%:114,103,0,0 -Example1_ref 523 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:116,107,0,0 0/0:.:223:223:0:0%:116,107,0,0 -Example1_ref 524 . G T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:115,109,1,0 0/0:.:225:224:1:0.44%:115,109,1,0 -Example1_ref 525 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:117,111,0,0 0/0:.:228:228:0:0%:117,111,0,0 -Example1_ref 526 . T A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:115,110,1,0 0/0:.:226:225:1:0.44%:115,110,1,0 -Example1_ref 527 . C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:0:0%:110,107,0,0 0/0:.:218:217:0:0%:110,107,0,0 -Example1_ref 528 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:111,112,0,0 0/0:.:223:223:0:0%:111,112,0,0 -Example1_ref 529 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:111,106,0,0 0/0:.:217:217:0:0%:111,106,0,0 -Example1_ref 530 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:108,116,0,0 0/0:.:224:224:0:0%:108,116,0,0 -Example1_ref 531 . C A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:106,115,0,1 0/0:.:223:221:1:0.45%:106,115,0,1 -Example1_ref 532 . G GT . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:215:1:0.46%:100,115,0,1 0/0:.:217:215:1:0.46%:100,115,0,1 -Example1_ref 533 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:102,116,0,0 0/0:.:218:218:0:0%:102,116,0,0 -Example1_ref 534 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:102,110,0,0 0/0:.:212:212:0:0%:102,110,0,0 -Example1_ref 535 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:102,118,0,0 0/0:.:220:220:0:0%:102,118,0,0 -Example1_ref 536 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:101,115,0,0 0/0:.:216:216:0:0%:101,115,0,0 -Example1_ref 537 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:101,118,0,0 0/0:.:219:219:0:0%:101,118,0,0 -Example1_ref 538 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:97,121,0,0 0/0:.:218:218:0:0%:97,121,0,0 -Example1_ref 539 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:104,118,0,0 0/0:.:222:222:0:0%:104,118,0,0 -Example1_ref 540 . A G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:97,116,0,1 0/0:.:214:213:1:0.47%:97,116,0,1 -Example1_ref 541 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:98,118,0,0 0/0:.:216:216:0:0%:98,118,0,0 -Example1_ref 542 . C A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:96,116,0,1 0/0:.:213:212:1:0.47%:96,116,0,1 -Example1_ref 543 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:97,116,0,0 0/0:.:213:213:0:0%:97,116,0,0 -Example1_ref 544 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:96,122,0,0 0/0:.:218:218:0:0%:96,122,0,0 -Example1_ref 545 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:89,121,0,0 0/0:.:210:210:0:0%:89,121,0,0 -Example1_ref 546 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:90,119,0,0 0/0:.:209:209:0:0%:90,119,0,0 -Example1_ref 547 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:211:211:0:0%:89,122,0,0 -Example1_ref 548 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:96,120,0,0 0/0:.:216:216:0:0%:96,120,0,0 -Example1_ref 549 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:98,123,0,0 0/0:.:221:221:0:0%:98,123,0,0 -Example1_ref 550 . T G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:100,123,0,1 0/0:.:224:223:1:0.45%:100,123,0,1 -Example1_ref 551 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:94,120,0,0 0/0:.:214:214:0:0%:94,120,0,0 -Example1_ref 552 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:92,124,0,0 0/0:.:216:216:0:0%:92,124,0,0 -Example1_ref 553 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:95,120,0,0 0/0:.:215:215:0:0%:95,120,0,0 -Example1_ref 554 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:91,119,0,0 0/0:.:210:210:0:0%:91,119,0,0 -Example1_ref 555 . G T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:90,120,1,0 0/0:.:211:210:1:0.47%:90,120,1,0 -Example1_ref 556 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:94,116,0,0 0/0:.:210:210:0:0%:94,116,0,0 -Example1_ref 557 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:94,119,0,0 0/0:.:213:213:0:0%:94,119,0,0 -Example1_ref 558 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:95,114,0,0 0/0:.:209:209:0:0%:95,114,0,0 -Example1_ref 559 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:98,118,0,0 0/0:.:216:216:0:0%:98,118,0,0 -Example1_ref 560 . A G . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:107,120,1,0 0/0:.:228:227:1:0.44%:107,120,1,0 -Example1_ref 561 . T TC . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:115,121,1,0 0/0:.:237:236:1:0.42%:115,121,1,0 -Example1_ref 562 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:116,122,0,0 0/0:.:238:238:0:0%:116,122,0,0 -Example1_ref 563 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:117,123,0,0 0/0:.:240:240:0:0%:117,123,0,0 -Example1_ref 564 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:119,127,0,0 0/0:.:246:246:0:0%:119,127,0,0 -Example1_ref 565 . A AACTGTCTCTT . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:117,129,1,0 0/0:.:247:246:1:0.4%:117,129,1,0 -Example1_ref 566 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:0:0%:119,133,0,0 0/0:.:253:252:0:0%:119,133,0,0 -Example1_ref 567 . T . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:121,132,0,0 0/0:.:253:253:0:0%:121,132,0,0 -Example1_ref 568 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:120,131,0,0 0/0:.:251:251:0:0%:120,131,0,0 -Example1_ref 569 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:0:0%:117,129,0,0 0/0:.:247:246:0:0%:117,129,0,0 -Example1_ref 570 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:117,118,0,0 0/0:.:235:235:0:0%:117,118,0,0 -Example1_ref 571 . G C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:240:1:0.41%:121,119,1,0 0/0:.:242:240:1:0.41%:121,119,1,0 -Example1_ref 572 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:118,125,0,0 0/0:.:244:243:0:0%:118,125,0,0 -Example1_ref 573 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:0:0%:120,120,0,0 0/0:.:241:240:0:0%:120,120,0,0 -Example1_ref 574 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:120,118,0,0 0/0:.:238:238:0:0%:120,118,0,0 -Example1_ref 575 . T C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:121,120,0,1 0/0:.:242:241:1:0.41%:121,120,0,1 -Example1_ref 576 . G C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:115,122,1,0 0/0:.:238:237:1:0.42%:115,122,1,0 -Example1_ref 577 . G T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:115,126,1,0 0/0:.:242:241:1:0.41%:115,126,1,0 -Example1_ref 578 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:109,129,0,0 0/0:.:238:238:0:0%:109,129,0,0 -Example1_ref 579 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:114,131,0,0 0/0:.:245:245:0:0%:114,131,0,0 -Example1_ref 580 . A AG . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:1:0.41%:111,131,0,1 0/0:.:243:242:1:0.41%:111,131,0,1 -Example1_ref 581 . GT G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:118,129,1,0 0/0:.:248:247:1:0.4%:118,129,1,0 -Example1_ref 582 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:243:243:0:0%:117,126,0,0 -Example1_ref 583 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:115,126,0,0 0/0:.:241:241:0:0%:115,126,0,0 -Example1_ref 584 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:119,128,0,0 0/0:.:247:247:0:0%:119,128,0,0 -Example1_ref 585 . T G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:119,127,0,1 0/0:.:247:246:1:0.4%:119,127,0,1 -Example1_ref 586 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:119,129,0,0 0/0:.:248:248:0:0%:119,129,0,0 -Example1_ref 587 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:118,130,0,0 0/0:.:248:248:0:0%:118,130,0,0 -Example1_ref 588 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:119,131,0,0 0/0:.:250:250:0:0%:119,131,0,0 -Example1_ref 589 . C . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:119,126,0,0 0/0:.:245:245:0:0%:119,126,0,0 -Example1_ref 590 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:119,127,0,0 0/0:.:246:246:0:0%:119,127,0,0 -Example1_ref 591 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:118,125,0,0 0/0:.:244:243:0:0%:118,125,0,0 -Example1_ref 592 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:118,129,0,0 0/0:.:247:247:0:0%:118,129,0,0 -Example1_ref 593 . G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:115,127,0,0 0/0:.:242:242:0:0%:115,127,0,0 -Example1_ref 594 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:117,123,0,0 0/0:.:240:240:0:0%:117,123,0,0 -Example1_ref 595 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:243:243:0:0%:117,126,0,0 -Example1_ref 596 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:117,128,0,0 0/0:.:245:245:0:0%:117,128,0,0 -Example1_ref 597 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:117,125,0,0 0/0:.:242:242:0:0%:117,125,0,0 -Example1_ref 598 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:116,128,0,0 0/0:.:244:244:0:0%:116,128,0,0 -Example1_ref 599 . A ACTCTGT . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:112,136,1,0 0/0:.:249:248:1:0.4%:112,136,1,0 -Example1_ref 600 . C CTCTGTCTCT . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:114,130,1,0 0/0:.:245:244:1:0.41%:114,130,1,0 -Example1_ref 601 . T C . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:243:1:0.41%:110,133,1,0 0/0:.:245:243:1:0.41%:110,133,1,0 -Example1_ref 602 . A T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:109,131,1,0 0/0:.:241:240:1:0.41%:109,131,1,0 -Example1_ref 603 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:109,131,0,0 0/0:.:240:240:0:0%:109,131,0,0 -Example1_ref 604 . C CCT . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:112,127,1,0 0/0:.:240:239:1:0.42%:112,127,1,0 -Example1_ref 605 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:109,131,0,0 0/0:.:240:240:0:0%:109,131,0,0 -Example1_ref 606 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:114,120,0,0 0/0:.:234:234:0:0%:114,120,0,0 -Example1_ref 607 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:113,127,0,0 0/0:.:240:240:0:0%:113,127,0,0 -Example1_ref 608 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:112,126,0,0 0/0:.:238:238:0:0%:112,126,0,0 -Example1_ref 609 . C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:110,127,0,0 0/0:.:237:237:0:0%:110,127,0,0 -Example1_ref 610 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:108,129,0,0 0/0:.:237:237:0:0%:108,129,0,0 -Example1_ref 611 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:110,128,0,0 0/0:.:238:238:0:0%:110,128,0,0 -Example1_ref 612 . G T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:101,129,1,0 0/0:.:231:230:1:0.43%:101,129,1,0 -Example1_ref 613 . G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:102,131,0,0 0/0:.:233:233:0:0%:102,131,0,0 -Example1_ref 614 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:0:0%:103,131,0,0 0/0:.:235:234:0:0%:103,131,0,0 -Example1_ref 615 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:103,129,0,0 0/0:.:232:232:0:0%:103,129,0,0 -Example1_ref 616 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:100,129,0,0 0/0:.:229:229:0:0%:100,129,0,0 -Example1_ref 617 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:100,133,0,0 0/0:.:233:233:0:0%:100,133,0,0 -Example1_ref 618 . G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:105,132,0,0 0/0:.:237:237:0:0%:105,132,0,0 -Example1_ref 619 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:107,130,0,0 0/0:.:237:237:0:0%:107,130,0,0 -Example1_ref 620 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:105,130,0,0 0/0:.:235:235:0:0%:105,130,0,0 -Example1_ref 621 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:105,128,0,0 0/0:.:233:233:0:0%:105,128,0,0 -Example1_ref 622 . A C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:105,131,0,1 0/0:.:237:236:1:0.42%:105,131,0,1 -Example1_ref 623 . G T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:106,128,0,1 0/0:.:235:234:1:0.43%:106,128,0,1 -Example1_ref 624 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:105,130,0,0 0/0:.:235:235:0:0%:105,130,0,0 -Example1_ref 625 . CT C . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=6.8831E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:230:2:0.86%:106,124,1,1 0/0:.:233:230:2:0.86%:106,124,1,1 -Example1_ref 626 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:106,130,0,0 0/0:.:236:236:0:0%:106,130,0,0 -Example1_ref 627 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:107,130,0,0 0/0:.:237:237:0:0%:107,130,0,0 -Example1_ref 628 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:106,130,0,0 0/0:.:236:236:0:0%:106,130,0,0 -Example1_ref 629 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:104,132,0,0 0/0:.:236:236:0:0%:104,132,0,0 -Example1_ref 630 . T A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:107,131,0,1 0/0:.:239:238:1:0.42%:107,131,0,1 -Example1_ref 631 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:107,133,0,0 0/0:.:240:240:0:0%:107,133,0,0 -Example1_ref 632 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:109,139,0,0 0/0:.:248:248:0:0%:109,139,0,0 -Example1_ref 633 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:106,132,0,0 0/0:.:238:238:0:0%:106,132,0,0 -Example1_ref 634 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:107,135,0,0 0/0:.:242:242:0:0%:107,135,0,0 -Example1_ref 635 . C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:103,134,0,0 0/0:.:237:237:0:0%:103,134,0,0 -Example1_ref 636 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:106,140,0,0 0/0:.:246:246:0:0%:106,140,0,0 -Example1_ref 637 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:99,141,0,0 0/0:.:240:240:0:0%:99,141,0,0 -Example1_ref 638 . T A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:100,139,0,1 0/0:.:240:239:1:0.42%:100,139,0,1 -Example1_ref 639 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:101,139,0,0 0/0:.:240:240:0:0%:101,139,0,0 -Example1_ref 640 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:102,138,0,0 0/0:.:240:240:0:0%:102,138,0,0 -Example1_ref 641 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:104,142,0,0 0/0:.:246:246:0:0%:104,142,0,0 -Example1_ref 642 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:103,138,0,0 0/0:.:241:241:0:0%:103,138,0,0 -Example1_ref 643 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:99,138,0,0 0/0:.:237:237:0:0%:99,138,0,0 -Example1_ref 644 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:101,137,0,0 0/0:.:238:238:0:0%:101,137,0,0 -Example1_ref 645 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:104,136,0,0 0/0:.:240:240:0:0%:104,136,0,0 -Example1_ref 646 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:102,133,0,0 0/0:.:235:235:0:0%:102,133,0,0 -Example1_ref 647 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:103,139,0,0 0/0:.:242:242:0:0%:103,139,0,0 -Example1_ref 648 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:100,141,0,0 0/0:.:241:241:0:0%:100,141,0,0 -Example1_ref 649 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:101,143,0,0 0/0:.:244:244:0:0%:101,143,0,0 -Example1_ref 650 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:102,144,0,0 0/0:.:246:246:0:0%:102,144,0,0 -Example1_ref 651 . G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:101,141,0,0 0/0:.:242:242:0:0%:101,141,0,0 -Example1_ref 652 . G T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:102,144,1,0 0/0:.:247:246:1:0.4%:102,144,1,0 -Example1_ref 653 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:101,139,0,0 0/0:.:240:240:0:0%:101,139,0,0 -Example1_ref 654 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:102,143,0,0 0/0:.:245:245:0:0%:102,143,0,0 -Example1_ref 655 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:105,141,0,0 0/0:.:246:246:0:0%:105,141,0,0 -Example1_ref 656 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:105,142,0,0 0/0:.:247:247:0:0%:105,142,0,0 -Example1_ref 657 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:108,144,0,0 0/0:.:252:252:0:0%:108,144,0,0 -Example1_ref 658 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:107,144,0,0 0/0:.:251:251:0:0%:107,144,0,0 -Example1_ref 659 . G . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:110,144,0,0 0/0:.:254:254:0:0%:110,144,0,0 -Example1_ref 660 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:108,144,0,0 0/0:.:252:252:0:0%:108,144,0,0 -Example1_ref 661 . A C . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:110,140,0,1 0/0:.:251:250:1:0.4%:110,140,0,1 -Example1_ref 662 . A T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:106,145,1,0 0/0:.:252:251:1:0.4%:106,145,1,0 -Example1_ref 663 . C . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:107,144,0,0 0/0:.:251:251:0:0%:107,144,0,0 -Example1_ref 664 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:108,143,0,0 0/0:.:251:251:0:0%:108,143,0,0 -Example1_ref 665 . G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:114,145,0,0 0/0:.:259:259:0:0%:114,145,0,0 -Example1_ref 666 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:0:0%:114,144,0,0 0/0:.:259:258:0:0%:114,144,0,0 -Example1_ref 667 . G . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:0:0%:111,146,0,0 0/0:.:258:257:0:0%:111,146,0,0 -Example1_ref 668 . C . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:0:0%:115,144,0,0 0/0:.:260:259:0:0%:115,144,0,0 -Example1_ref 669 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:114,149,0,0 0/0:.:263:263:0:0%:114,149,0,0 -Example1_ref 670 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:113,149,0,0 0/0:.:262:262:0:0%:113,149,0,0 -Example1_ref 671 . G . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:111,145,0,0 0/0:.:256:256:0:0%:111,145,0,0 -Example1_ref 672 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:112,146,0,0 0/0:.:258:258:0:0%:112,146,0,0 -Example1_ref 673 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:111,149,0,0 0/0:.:260:260:0:0%:111,149,0,0 -Example1_ref 674 . G . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:112,143,0,0 0/0:.:255:255:0:0%:112,143,0,0 -Example1_ref 675 . G . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:113,142,0,0 0/0:.:255:255:0:0%:113,142,0,0 -Example1_ref 676 . G . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:110,144,0,0 0/0:.:254:254:0:0%:110,144,0,0 -Example1_ref 677 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:113,146,0,0 0/0:.:259:259:0:0%:113,146,0,0 -Example1_ref 678 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:115,146,0,0 0/0:.:261:261:0:0%:115,146,0,0 -Example1_ref 679 . G . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:115,141,0,0 0/0:.:256:256:0:0%:115,141,0,0 -Example1_ref 680 . G . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:116,147,0,0 0/0:.:263:263:0:0%:116,147,0,0 -Example1_ref 681 . T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:118,148,0,0 0/0:.:266:266:0:0%:118,148,0,0 -Example1_ref 682 . G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:119,148,0,0 0/0:.:267:267:0:0%:119,148,0,0 -Example1_ref 683 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:122,149,0,0 0/0:.:271:271:0:0%:122,149,0,0 -Example1_ref 684 . T . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:120,144,0,0 0/0:.:264:264:0:0%:120,144,0,0 -Example1_ref 685 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:118,144,0,0 0/0:.:262:262:0:0%:118,144,0,0 -Example1_ref 686 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:117,145,0,0 0/0:.:262:262:0:0%:117,145,0,0 -Example1_ref 687 . G . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:116,148,0,0 0/0:.:264:264:0:0%:116,148,0,0 -Example1_ref 688 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:118,144,0,0 0/0:.:262:262:0:0%:118,144,0,0 -Example1_ref 689 . G . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:120,145,0,0 0/0:.:265:265:0:0%:120,145,0,0 -Example1_ref 690 . G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:118,149,0,0 0/0:.:267:267:0:0%:118,149,0,0 -Example1_ref 691 . C A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:262:1:0.38%:123,139,0,1 0/0:.:264:262:1:0.38%:123,139,0,1 -Example1_ref 692 . G . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:124,147,0,0 0/0:.:271:271:0:0%:124,147,0,0 -Example1_ref 693 . A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:126,150,0,0 0/0:.:276:276:0:0%:126,150,0,0 -Example1_ref 694 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:127,146,0,0 0/0:.:273:273:0:0%:127,146,0,0 -Example1_ref 695 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:125,152,0,0 0/0:.:277:277:0:0%:125,152,0,0 -Example1_ref 696 . C . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:134,151,0,0 0/0:.:285:285:0:0%:134,151,0,0 -Example1_ref 697 . A C . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:280:1:0.36%:129,151,1,0 0/0:.:282:280:1:0.36%:129,151,1,0 -Example1_ref 698 . G . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:140,151,0,0 0/0:.:291:291:0:0%:140,151,0,0 -Example1_ref 699 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:141,149,0,0 0/0:.:290:290:0:0%:141,149,0,0 -Example1_ref 700 . G T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:140,147,1,0 0/0:.:288:287:1:0.35%:140,147,1,0 -Example1_ref 701 . G . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:139,151,0,0 0/0:.:290:290:0:0%:139,151,0,0 -Example1_ref 702 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:140,151,0,0 0/0:.:291:291:0:0%:140,151,0,0 -Example1_ref 703 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:137,153,0,0 0/0:.:290:290:0:0%:137,153,0,0 -Example1_ref 704 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:140,154,0,0 0/0:.:294:294:0:0%:140,154,0,0 -Example1_ref 705 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:145,152,0,0 0/0:.:297:297:0:0%:145,152,0,0 -Example1_ref 706 . G . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:145,153,0,0 0/0:.:298:298:0:0%:145,153,0,0 -Example1_ref 707 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:137,153,0,0 0/0:.:290:290:0:0%:137,153,0,0 -Example1_ref 708 . T . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:135,152,0,0 0/0:.:287:287:0:0%:135,152,0,0 -Example1_ref 709 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:138,150,0,0 0/0:.:288:288:0:0%:138,150,0,0 -Example1_ref 710 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:0:0%:135,150,0,0 0/0:.:286:285:0:0%:135,150,0,0 -Example1_ref 711 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:143,143,0,0 0/0:.:286:286:0:0%:143,143,0,0 -Example1_ref 712 . G . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:141,151,0,0 0/0:.:292:292:0:0%:141,151,0,0 -Example1_ref 713 . T G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:142,150,1,0 0/0:.:293:292:1:0.34%:142,150,1,0 -Example1_ref 714 . C . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:141,146,0,0 0/0:.:287:287:0:0%:141,146,0,0 -Example1_ref 715 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:144,147,0,0 0/0:.:291:291:0:0%:144,147,0,0 -Example1_ref 716 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:146,145,0,0 0/0:.:291:291:0:0%:146,145,0,0 -Example1_ref 717 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:149,144,0,0 0/0:.:293:293:0:0%:149,144,0,0 -Example1_ref 718 . C . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:148,148,0,0 0/0:.:296:296:0:0%:148,148,0,0 -Example1_ref 719 . A G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:1:0.34%:146,147,0,1 0/0:.:295:293:1:0.34%:146,147,0,1 -Example1_ref 720 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:146,147,0,0 0/0:.:293:293:0:0%:146,147,0,0 -Example1_ref 721 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:142,144,0,0 0/0:.:286:286:0:0%:142,144,0,0 -Example1_ref 722 . C A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:147,142,0,1 0/0:.:290:289:1:0.34%:147,142,0,1 -Example1_ref 723 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:147,146,0,0 0/0:.:293:293:0:0%:147,146,0,0 -Example1_ref 724 . G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:155,150,0,0 0/0:.:305:305:0:0%:155,150,0,0 -Example1_ref 725 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:159,147,0,0 0/0:.:306:306:0:0%:159,147,0,0 -Example1_ref 726 . C A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:158,142,0,1 0/0:.:301:300:1:0.33%:158,142,0,1 -Example1_ref 727 . C A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:148,141,0,1 0/0:.:290:289:1:0.34%:148,141,0,1 -Example1_ref 728 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:0:0%:162,142,0,0 0/0:.:305:304:0:0%:162,142,0,0 -Example1_ref 729 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:160,150,0,0 0/0:.:310:310:0:0%:160,150,0,0 -Example1_ref 730 . A G . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:159,150,1,0 0/0:.:310:309:1:0.32%:159,150,1,0 -Example1_ref 731 . C A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:164,149,0,1 0/0:.:314:313:1:0.32%:164,149,0,1 -Example1_ref 732 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:157,146,0,0 0/0:.:303:303:0:0%:157,146,0,0 -Example1_ref 733 . G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:0:0%:157,144,0,0 0/0:.:302:301:0:0%:157,144,0,0 -Example1_ref 734 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:152,134,0,0 0/0:.:286:286:0:0%:152,134,0,0 -Example1_ref 735 . G C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:291:1:0.34%:157,134,1,0 0/0:.:293:291:1:0.34%:157,134,1,0 -Example1_ref 736 . C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:0:0%:158,134,0,0 0/0:.:293:292:0:0%:158,134,0,0 -Example1_ref 737 . T C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:155,136,1,0 0/0:.:292:291:1:0.34%:155,136,1,0 -Example1_ref 738 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:157,138,0,0 0/0:.:295:295:0:0%:157,138,0,0 -Example1_ref 739 . G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:158,137,0,0 0/0:.:295:295:0:0%:158,137,0,0 -Example1_ref 740 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:159,138,0,0 0/0:.:297:297:0:0%:159,138,0,0 -Example1_ref 741 . T C . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:155,139,2,0 0/0:.:296:294:2:0.68%:155,139,2,0 -Example1_ref 742 . A G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:159,136,1,0 0/0:.:296:295:1:0.34%:159,136,1,0 -Example1_ref 743 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:158,136,0,0 0/0:.:294:294:0:0%:158,136,0,0 -Example1_ref 744 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:166,134,0,0 0/0:.:301:300:0:0%:166,134,0,0 -Example1_ref 745 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:164,143,0,0 0/0:.:307:307:0:0%:164,143,0,0 -Example1_ref 746 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:166,143,0,0 0/0:.:309:309:0:0%:166,143,0,0 -Example1_ref 747 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:161,142,0,0 0/0:.:303:303:0:0%:161,142,0,0 -Example1_ref 748 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:163,140,0,0 0/0:.:304:303:0:0%:163,140,0,0 -Example1_ref 749 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:155,143,0,0 0/0:.:298:298:0:0%:155,143,0,0 -Example1_ref 750 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:154,141,0,0 0/0:.:295:295:0:0%:154,141,0,0 -Example1_ref 751 . G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:146,141,0,0 0/0:.:287:287:0:0%:146,141,0,0 -Example1_ref 752 . GT G . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:146,141,1,0 0/0:.:288:287:1:0.35%:146,141,1,0 -Example1_ref 753 . T . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:151,136,0,0 0/0:.:287:287:0:0%:151,136,0,0 -Example1_ref 754 . T G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:282:1:0.35%:149,133,1,0 0/0:.:283:282:1:0.35%:149,133,1,0 -Example1_ref 755 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:150,132,0,0 0/0:.:282:282:0:0%:150,132,0,0 -Example1_ref 756 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:148,136,0,0 0/0:.:284:284:0:0%:148,136,0,0 -Example1_ref 757 . G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:145,136,0,0 0/0:.:281:281:0:0%:145,136,0,0 -Example1_ref 758 . A AT . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:146,139,1,0 0/0:.:286:285:1:0.35%:146,139,1,0 -Example1_ref 759 . C CCTGTCTCTT . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:150,137,1,0 0/0:.:288:287:1:0.35%:150,137,1,0 -Example1_ref 760 . A G . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:154,135,1,0 0/0:.:290:289:1:0.34%:154,135,1,0 -Example1_ref 761 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:157,131,0,0 0/0:.:288:288:0:0%:157,131,0,0 -Example1_ref 762 . T G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:160,132,1,0 0/0:.:293:292:1:0.34%:160,132,1,0 -Example1_ref 763 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:158,133,0,0 0/0:.:291:291:0:0%:158,133,0,0 -Example1_ref 764 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:166,135,0,0 0/0:.:301:301:0:0%:166,135,0,0 -Example1_ref 765 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:166,131,0,0 0/0:.:297:297:0:0%:166,131,0,0 -Example1_ref 766 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:166,131,0,0 0/0:.:297:297:0:0%:166,131,0,0 -Example1_ref 767 . A G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:167,134,1,0 0/0:.:302:301:1:0.33%:167,134,1,0 -Example1_ref 768 . C A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:166,130,0,1 0/0:.:297:296:1:0.34%:166,130,0,1 -Example1_ref 769 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:167,122,0,0 0/0:.:289:289:0:0%:167,122,0,0 -Example1_ref 770 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:294:294:0:0%:171,123,0,0 -Example1_ref 771 . T . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:166,121,0,0 0/0:.:287:287:0:0%:166,121,0,0 -Example1_ref 772 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:163,123,0,0 0/0:.:286:286:0:0%:163,123,0,0 -Example1_ref 773 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:167,122,0,0 0/0:.:289:289:0:0%:167,122,0,0 -Example1_ref 774 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:165,122,0,0 0/0:.:287:287:0:0%:165,122,0,0 -Example1_ref 775 . T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:165,119,0,0 0/0:.:284:284:0:0%:165,119,0,0 -Example1_ref 776 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:168,121,0,0 0/0:.:289:289:0:0%:168,121,0,0 -Example1_ref 777 . C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:163,121,0,0 0/0:.:284:284:0:0%:163,121,0,0 -Example1_ref 778 . C . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:171,118,0,0 0/0:.:289:289:0:0%:171,118,0,0 -Example1_ref 779 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:169,118,0,0 0/0:.:287:287:0:0%:169,118,0,0 -Example1_ref 780 . G A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:172,116,0,1 0/0:.:289:288:1:0.35%:172,116,0,1 -Example1_ref 781 . C A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:173,115,0,1 0/0:.:289:288:1:0.35%:173,115,0,1 -Example1_ref 782 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:175,118,0,0 0/0:.:293:293:0:0%:175,118,0,0 -Example1_ref 783 . G . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:174,118,0,0 0/0:.:292:292:0:0%:174,118,0,0 -Example1_ref 784 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:175,116,0,0 0/0:.:291:291:0:0%:175,116,0,0 -Example1_ref 785 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:172,117,0,0 0/0:.:289:289:0:0%:172,117,0,0 -Example1_ref 786 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:170,117,0,0 0/0:.:287:287:0:0%:170,117,0,0 -Example1_ref 787 . T . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:173,112,0,0 0/0:.:285:285:0:0%:173,112,0,0 -Example1_ref 788 . G . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:174,114,0,0 0/0:.:288:288:0:0%:174,114,0,0 -Example1_ref 789 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:170,112,0,0 0/0:.:282:282:0:0%:170,112,0,0 -Example1_ref 790 . T A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:169,108,1,0 0/0:.:278:277:1:0.36%:169,108,1,0 -Example1_ref 791 . C . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:173,112,0,0 0/0:.:285:285:0:0%:173,112,0,0 -Example1_ref 792 . T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:173,111,0,0 0/0:.:284:284:0:0%:173,111,0,0 -Example1_ref 793 . C . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:173,112,0,0 0/0:.:285:285:0:0%:173,112,0,0 -Example1_ref 794 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:168,116,0,0 0/0:.:284:284:0:0%:168,116,0,0 -Example1_ref 795 . C . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:176,112,0,0 0/0:.:288:288:0:0%:176,112,0,0 -Example1_ref 796 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:176,116,0,0 0/0:.:292:292:0:0%:176,116,0,0 -Example1_ref 797 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:173,117,0,0 0/0:.:290:290:0:0%:173,117,0,0 -Example1_ref 798 . C . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:178,113,0,0 0/0:.:291:291:0:0%:178,113,0,0 -Example1_ref 799 . C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:179,114,0,0 0/0:.:293:293:0:0%:179,114,0,0 -Example1_ref 800 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:179,117,0,0 0/0:.:296:296:0:0%:179,117,0,0 -Example1_ref 801 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:178,117,0,0 0/0:.:295:295:0:0%:178,117,0,0 -Example1_ref 802 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:174,123,0,0 0/0:.:297:297:0:0%:174,123,0,0 -Example1_ref 803 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:174,122,0,0 0/0:.:296:296:0:0%:174,122,0,0 -Example1_ref 804 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:170,125,0,0 0/0:.:295:295:0:0%:170,125,0,0 -Example1_ref 805 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:299:0:0%:175,124,0,0 0/0:.:300:299:0:0%:175,124,0,0 -Example1_ref 806 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:0:0%:173,124,0,0 0/0:.:298:297:0:0%:173,124,0,0 -Example1_ref 807 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:0:0%:174,121,0,0 0/0:.:297:295:0:0%:174,121,0,0 -Example1_ref 808 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:0:0%:176,120,0,0 0/0:.:297:296:0:0%:176,120,0,0 -Example1_ref 809 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:0:0%:176,122,0,0 0/0:.:299:298:0:0%:176,122,0,0 -Example1_ref 810 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:180,123,0,0 0/0:.:303:303:0:0%:180,123,0,0 -Example1_ref 811 . T G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:182,122,0,1 0/0:.:305:304:1:0.33%:182,122,0,1 -Example1_ref 812 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:179,120,0,0 0/0:.:299:299:0:0%:179,120,0,0 -Example1_ref 813 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:185,122,0,0 0/0:.:307:307:0:0%:185,122,0,0 -Example1_ref 814 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:184,123,0,0 0/0:.:307:307:0:0%:184,123,0,0 -Example1_ref 815 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:183,118,0,0 0/0:.:301:301:0:0%:183,118,0,0 -Example1_ref 816 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:181,120,0,0 0/0:.:301:301:0:0%:181,120,0,0 -Example1_ref 817 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:184,120,0,0 0/0:.:304:304:0:0%:184,120,0,0 -Example1_ref 818 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:175,120,0,0 0/0:.:295:295:0:0%:175,120,0,0 -Example1_ref 819 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:182,117,0,0 0/0:.:299:299:0:0%:182,117,0,0 -Example1_ref 820 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:178,119,0,0 0/0:.:297:297:0:0%:178,119,0,0 -Example1_ref 821 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:185,119,0,0 0/0:.:304:304:0:0%:185,119,0,0 -Example1_ref 822 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:183,113,0,0 0/0:.:296:296:0:0%:183,113,0,0 -Example1_ref 823 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:184,116,0,0 0/0:.:300:300:0:0%:184,116,0,0 -Example1_ref 824 . G . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:183,117,0,0 0/0:.:300:300:0:0%:183,117,0,0 -Example1_ref 825 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:184,120,0,0 0/0:.:304:304:0:0%:184,120,0,0 -Example1_ref 826 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:190,124,0,0 0/0:.:314:314:0:0%:190,124,0,0 -Example1_ref 827 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:185,126,0,0 0/0:.:311:311:0:0%:185,126,0,0 -Example1_ref 828 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:187,127,0,0 0/0:.:314:314:0:0%:187,127,0,0 -Example1_ref 829 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:198,126,0,0 0/0:.:324:324:0:0%:198,126,0,0 -Example1_ref 830 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:196,128,0,0 0/0:.:324:324:0:0%:196,128,0,0 -Example1_ref 831 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:211,131,0,0 0/0:.:343:342:0:0%:211,131,0,0 -Example1_ref 832 . C CCTGTCTCTT . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:214,130,1,0 0/0:.:345:344:1:0.29%:214,130,1,0 -Example1_ref 833 . A . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:214,130,0,0 0/0:.:344:344:0:0%:214,130,0,0 -Example1_ref 834 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:211,130,0,0 0/0:.:341:341:0:0%:211,130,0,0 -Example1_ref 835 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:213,132,0,0 0/0:.:345:345:0:0%:213,132,0,0 -Example1_ref 836 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:212,133,0,0 0/0:.:345:345:0:0%:212,133,0,0 -Example1_ref 837 . G . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:209,133,0,0 0/0:.:342:342:0:0%:209,133,0,0 -Example1_ref 838 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:211,122,0,0 0/0:.:333:333:0:0%:211,122,0,0 -Example1_ref 839 . G . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:207,131,0,0 0/0:.:338:338:0:0%:207,131,0,0 -Example1_ref 840 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:214,129,0,0 0/0:.:343:343:0:0%:214,129,0,0 -Example1_ref 841 . T A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:341:1:0.29%:213,128,1,0 0/0:.:342:341:1:0.29%:213,128,1,0 -Example1_ref 842 . G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:207,130,0,0 0/0:.:337:337:0:0%:207,130,0,0 -Example1_ref 843 . C G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:205,126,1,0 0/0:.:332:331:1:0.3%:205,126,1,0 -Example1_ref 844 . AGGT A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:1:0.29%:215,131,1,0 0/0:.:347:346:1:0.29%:215,131,1,0 -Example1_ref 845 . G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:206,131,0,0 0/0:.:337:337:0:0%:206,131,0,0 -Example1_ref 846 . G T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:321:2:0.62%:195,126,2,0 0/0:.:324:321:2:0.62%:195,126,2,0 -Example1_ref 847 . T TCAAAG . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:328:1:0.3%:200,128,1,0 0/0:.:333:328:1:0.3%:200,128,1,0 -Example1_ref 848 . C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:205,123,0,0 0/0:.:329:328:0:0%:205,123,0,0 -Example1_ref 849 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:0:0%:211,125,0,0 0/0:.:337:336:0:0%:211,125,0,0 -Example1_ref 850 . C A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:332:1:0.3%:203,129,1,0 0/0:.:334:332:1:0.3%:203,129,1,0 -Example1_ref 851 . G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:0:0%:202,125,0,0 0/0:.:328:327:0:0%:202,125,0,0 -Example1_ref 852 . C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:203,125,0,0 0/0:.:329:328:0:0%:203,125,0,0 -Example1_ref 853 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:207,125,0,0 0/0:.:333:332:0:0%:207,125,0,0 -Example1_ref 854 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:206,122,0,0 0/0:.:329:328:0:0%:206,122,0,0 -Example1_ref 855 . C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:207,124,0,0 0/0:.:331:331:0:0%:207,124,0,0 -Example1_ref 856 . A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:207,128,0,0 0/0:.:335:335:0:0%:207,128,0,0 -Example1_ref 857 . T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:210,124,0,0 0/0:.:334:334:0:0%:210,124,0,0 -Example1_ref 858 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:208,125,0,0 0/0:.:333:333:0:0%:208,125,0,0 -Example1_ref 859 . C . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:214,126,0,0 0/0:.:340:340:0:0%:214,126,0,0 -Example1_ref 860 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:341:0:0%:215,126,0,0 0/0:.:343:341:0:0%:215,126,0,0 -Example1_ref 861 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:214,121,0,0 0/0:.:335:335:0:0%:214,121,0,0 -Example1_ref 862 . C . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:212,124,0,0 0/0:.:336:336:0:0%:212,124,0,0 -Example1_ref 863 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:214,125,0,0 0/0:.:339:339:0:0%:214,125,0,0 -Example1_ref 864 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:213,127,0,0 0/0:.:340:340:0:0%:213,127,0,0 -Example1_ref 865 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:213,132,0,0 0/0:.:345:345:0:0%:213,132,0,0 -Example1_ref 866 . A C . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:211,138,1,0 0/0:.:350:349:1:0.29%:211,138,1,0 -Example1_ref 867 . C . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:214,135,0,0 0/0:.:349:349:0:0%:214,135,0,0 -Example1_ref 868 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:218,135,0,0 0/0:.:353:353:0:0%:218,135,0,0 -Example1_ref 869 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:216,136,0,0 0/0:.:352:352:0:0%:216,136,0,0 -Example1_ref 870 . T . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:214,135,0,0 0/0:.:349:349:0:0%:214,135,0,0 -Example1_ref 871 . C . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:211,136,0,0 0/0:.:347:347:0:0%:211,136,0,0 -Example1_ref 872 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:211,142,0,0 0/0:.:353:353:0:0%:211,142,0,0 -Example1_ref 873 . G . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:211,139,0,0 0/0:.:350:350:0:0%:211,139,0,0 -Example1_ref 874 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:211,139,0,0 0/0:.:350:350:0:0%:211,139,0,0 -Example1_ref 875 . T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:212,138,0,0 0/0:.:350:350:0:0%:212,138,0,0 -Example1_ref 876 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:218,140,0,0 0/0:.:358:358:0:0%:218,140,0,0 -Example1_ref 877 . T . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:218,141,0,0 0/0:.:359:359:0:0%:218,141,0,0 -Example1_ref 878 . G . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:0:0%:212,142,0,0 0/0:.:355:354:0:0%:212,142,0,0 -Example1_ref 879 . G T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:209,140,1,0 0/0:.:350:349:1:0.29%:209,140,1,0 -Example1_ref 880 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:217,143,0,0 0/0:.:360:360:0:0%:217,143,0,0 -Example1_ref 881 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:213,139,0,0 0/0:.:352:352:0:0%:213,139,0,0 -Example1_ref 882 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:214,140,0,0 0/0:.:354:354:0:0%:214,140,0,0 -Example1_ref 883 . T . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:212,141,0,0 0/0:.:353:353:0:0%:212,141,0,0 -Example1_ref 884 . G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:213,144,0,0 0/0:.:357:357:0:0%:213,144,0,0 -Example1_ref 885 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:209,141,0,0 0/0:.:350:350:0:0%:209,141,0,0 -Example1_ref 886 . G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:201,142,0,0 0/0:.:343:343:0:0%:201,142,0,0 -Example1_ref 887 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:204,142,0,0 0/0:.:346:346:0:0%:204,142,0,0 -Example1_ref 888 . C . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:202,139,0,0 0/0:.:341:341:0:0%:202,139,0,0 -Example1_ref 889 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:202,138,0,0 0/0:.:340:340:0:0%:202,138,0,0 -Example1_ref 890 . A . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:203,141,0,0 0/0:.:344:344:0:0%:203,141,0,0 -Example1_ref 891 . G . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:197,141,0,0 0/0:.:338:338:0:0%:197,141,0,0 -Example1_ref 892 . A . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:197,139,0,0 0/0:.:336:336:0:0%:197,139,0,0 -Example1_ref 893 . A G . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:343:1:0.29%:202,141,0,1 0/0:.:344:343:1:0.29%:202,141,0,1 -Example1_ref 894 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:0:0%:199,140,0,0 0/0:.:340:339:0:0%:199,140,0,0 -Example1_ref 895 . G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:192,138,0,0 0/0:.:330:330:0:0%:192,138,0,0 -Example1_ref 896 . G T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=6.8807E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:326:2:0.61%:185,141,2,0 0/0:.:328:326:2:0.61%:185,141,2,0 -Example1_ref 897 . C A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:193,145,1,0 0/0:.:339:338:1:0.29%:193,145,1,0 -Example1_ref 898 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:196,146,0,0 0/0:.:342:342:0:0%:196,146,0,0 -Example1_ref 899 . G . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:189,144,0,0 0/0:.:333:333:0:0%:189,144,0,0 -Example1_ref 900 . C A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:196,142,0,1 0/0:.:339:338:1:0.29%:196,142,0,1 -Example1_ref 901 . T A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:1:0.3%:196,140,1,0 0/0:.:337:336:1:0.3%:196,140,1,0 -Example1_ref 902 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:194,143,0,0 0/0:.:337:337:0:0%:194,143,0,0 -Example1_ref 903 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:193,143,0,0 0/0:.:336:336:0:0%:193,143,0,0 -Example1_ref 904 . G T . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:330:1:0.3%:184,146,1,0 0/0:.:332:330:1:0.3%:184,146,1,0 -Example1_ref 905 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:196,147,0,0 0/0:.:343:343:0:0%:196,147,0,0 -Example1_ref 906 . C . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:191,143,0,0 0/0:.:334:334:0:0%:191,143,0,0 -Example1_ref 907 . T TAAAA . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:194,145,1,0 0/0:.:340:339:1:0.29%:194,145,1,0 -Example1_ref 908 . C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:0:0%:197,141,0,0 0/0:.:339:338:0:0%:197,141,0,0 -Example1_ref 909 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:201,142,0,0 0/0:.:343:343:0:0%:201,142,0,0 -Example1_ref 910 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:207,143,0,0 0/0:.:350:350:0:0%:207,143,0,0 -Example1_ref 911 . TC T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:208,141,1,0 0/0:.:350:349:1:0.29%:208,141,1,0 -Example1_ref 912 . C . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:206,144,0,0 0/0:.:350:350:0:0%:206,144,0,0 -Example1_ref 913 . C T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:202,145,1,0 0/0:.:348:347:1:0.29%:202,145,1,0 -Example1_ref 914 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:199,144,0,0 0/0:.:343:343:0:0%:199,144,0,0 -Example1_ref 915 . C . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:203,142,0,0 0/0:.:345:345:0:0%:203,142,0,0 -Example1_ref 916 . T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:204,144,0,0 0/0:.:348:348:0:0%:204,144,0,0 -Example1_ref 917 . C G . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:203,141,1,0 0/0:.:345:344:1:0.29%:203,141,1,0 -Example1_ref 918 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:201,140,0,0 0/0:.:341:341:0:0%:201,140,0,0 -Example1_ref 919 . C . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:202,141,0,0 0/0:.:343:343:0:0%:202,141,0,0 -Example1_ref 920 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:200,142,0,0 0/0:.:342:342:0:0%:200,142,0,0 -Example1_ref 921 . G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:196,140,0,0 0/0:.:336:336:0:0%:196,140,0,0 -Example1_ref 922 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:202,141,0,0 0/0:.:343:343:0:0%:202,141,0,0 -Example1_ref 923 . C . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:201,136,0,0 0/0:.:337:337:0:0%:201,136,0,0 -Example1_ref 924 . C . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:197,137,0,0 0/0:.:334:334:0:0%:197,137,0,0 -Example1_ref 925 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:190,140,0,0 0/0:.:330:330:0:0%:190,140,0,0 -Example1_ref 926 . G . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:196,137,0,0 0/0:.:333:333:0:0%:196,137,0,0 -Example1_ref 927 . A G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:334:1:0.3%:197,137,0,1 0/0:.:336:334:1:0.3%:197,137,0,1 -Example1_ref 928 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:201,140,0,0 0/0:.:341:341:0:0%:201,140,0,0 -Example1_ref 929 . A C . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:193,141,1,0 0/0:.:335:334:1:0.3%:193,141,1,0 -Example1_ref 930 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:199,141,0,0 0/0:.:340:340:0:0%:199,141,0,0 -Example1_ref 931 . C . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:341:0:0%:201,140,0,0 0/0:.:342:341:0:0%:201,140,0,0 -Example1_ref 932 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:200,143,0,0 0/0:.:343:343:0:0%:200,143,0,0 -Example1_ref 933 . A ATCTGTC . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:198,141,1,0 0/0:.:340:339:1:0.29%:198,141,1,0 -Example1_ref 934 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:190,139,0,0 0/0:.:329:329:0:0%:190,139,0,0 -Example1_ref 935 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:190,134,0,0 0/0:.:324:324:0:0%:190,134,0,0 -Example1_ref 936 . G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:190,135,0,0 0/0:.:325:325:0:0%:190,135,0,0 -Example1_ref 937 . A C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:193,137,0,1 0/0:.:331:330:1:0.3%:193,137,0,1 -Example1_ref 938 . T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:193,138,0,0 0/0:.:331:331:0:0%:193,138,0,0 -Example1_ref 939 . T . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:190,140,0,0 0/0:.:330:330:0:0%:190,140,0,0 -Example1_ref 940 . A . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:195,141,0,0 0/0:.:336:336:0:0%:195,141,0,0 -Example1_ref 941 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:192,137,0,0 0/0:.:329:329:0:0%:192,137,0,0 -Example1_ref 942 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:188,138,0,0 0/0:.:326:326:0:0%:188,138,0,0 -Example1_ref 943 . A C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:188,139,0,1 0/0:.:328:327:1:0.3%:188,139,0,1 -Example1_ref 944 . G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:0:0%:183,143,0,0 0/0:.:327:326:0:0%:183,143,0,0 -Example1_ref 945 . C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:191,138,0,0 0/0:.:329:329:0:0%:191,138,0,0 -Example1_ref 946 . T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:186,135,0,0 0/0:.:321:321:0:0%:186,135,0,0 -Example1_ref 947 . C G . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:191,137,0,1 0/0:.:329:328:1:0.3%:191,137,0,1 -Example1_ref 948 . T A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:191,136,0,1 0/0:.:328:327:1:0.3%:191,136,0,1 -Example1_ref 949 . AATG A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:184,137,1,0 0/0:.:322:321:1:0.31%:184,137,1,0 -Example1_ref 950 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:174,138,0,0 0/0:.:312:312:0:0%:174,138,0,0 -Example1_ref 951 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:185,140,0,0 0/0:.:325:325:0:0%:185,140,0,0 -Example1_ref 952 . G . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:174,144,0,0 0/0:.:318:318:0:0%:174,144,0,0 -Example1_ref 953 . G T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:172,140,1,0 0/0:.:313:312:1:0.32%:172,140,1,0 -Example1_ref 954 . A T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:167,144,0,1 0/0:.:312:311:1:0.32%:167,144,0,1 -Example1_ref 955 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:179,145,0,0 0/0:.:324:324:0:0%:179,145,0,0 -Example1_ref 956 . C . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:182,145,0,0 0/0:.:327:327:0:0%:182,145,0,0 -Example1_ref 957 . T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:184,144,0,0 0/0:.:328:328:0:0%:184,144,0,0 -Example1_ref 958 . G . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:190,144,0,0 0/0:.:334:334:0:0%:190,144,0,0 -Example1_ref 959 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:187,149,0,0 0/0:.:336:336:0:0%:187,149,0,0 -Example1_ref 960 . A G . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:188,146,0,1 0/0:.:335:334:1:0.3%:188,146,0,1 -Example1_ref 961 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:185,144,0,0 0/0:.:329:329:0:0%:185,144,0,0 -Example1_ref 962 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:188,145,0,0 0/0:.:333:333:0:0%:188,145,0,0 -Example1_ref 963 . T . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:187,143,0,0 0/0:.:330:330:0:0%:187,143,0,0 -Example1_ref 964 . A G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:187,144,0,1 0/0:.:332:331:1:0.3%:187,144,0,1 -Example1_ref 965 . T G . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:187,143,1,0 0/0:.:331:330:1:0.3%:187,143,1,0 -Example1_ref 966 . C . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:193,142,0,0 0/0:.:335:335:0:0%:193,142,0,0 -Example1_ref 967 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:191,139,0,0 0/0:.:330:330:0:0%:191,139,0,0 -Example1_ref 968 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:188,137,0,0 0/0:.:325:325:0:0%:188,137,0,0 -Example1_ref 969 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:0:0%:182,141,0,0 0/0:.:324:323:0:0%:182,141,0,0 -Example1_ref 970 . A G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:186,137,0,1 0/0:.:325:323:1:0.31%:186,137,0,1 -Example1_ref 971 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:0:0%:183,137,0,0 0/0:.:321:320:0:0%:183,137,0,0 -Example1_ref 972 . G T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:315:1:0.32%:176,139,1,0 0/0:.:317:315:1:0.32%:176,139,1,0 -Example1_ref 973 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:183,140,0,0 0/0:.:323:323:0:0%:183,140,0,0 -Example1_ref 974 . C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:181,140,0,0 0/0:.:321:321:0:0%:181,140,0,0 -Example1_ref 975 . C . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:317:0:0%:178,139,0,0 0/0:.:318:317:0:0%:178,139,0,0 -Example1_ref 976 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:183,143,0,0 0/0:.:326:326:0:0%:183,143,0,0 -Example1_ref 977 . C . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:183,142,0,0 0/0:.:325:325:0:0%:183,142,0,0 -Example1_ref 978 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:180,141,0,0 0/0:.:321:321:0:0%:180,141,0,0 -Example1_ref 979 . C . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:185,140,0,0 0/0:.:325:325:0:0%:185,140,0,0 -Example1_ref 980 . G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:176,141,0,0 0/0:.:317:317:0:0%:176,141,0,0 -Example1_ref 981 . C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:179,142,0,0 0/0:.:321:321:0:0%:179,142,0,0 -Example1_ref 982 . T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:179,142,0,0 0/0:.:321:321:0:0%:179,142,0,0 -Example1_ref 983 . C A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:186,138,0,1 0/0:.:325:324:1:0.31%:186,138,0,1 -Example1_ref 984 . C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:186,143,0,0 0/0:.:329:329:0:0%:186,143,0,0 -Example1_ref 985 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:198,144,0,0 0/0:.:342:342:0:0%:198,144,0,0 -Example1_ref 986 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:198,143,0,0 0/0:.:341:341:0:0%:198,143,0,0 -Example1_ref 987 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:198,147,0,0 0/0:.:345:345:0:0%:198,147,0,0 -Example1_ref 988 . C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:195,144,0,0 0/0:.:339:339:0:0%:195,144,0,0 -Example1_ref 989 . A G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:189,146,1,0 0/0:.:336:335:1:0.3%:189,146,1,0 -Example1_ref 990 . T . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:192,140,0,0 0/0:.:332:332:0:0%:192,140,0,0 -Example1_ref 991 . C A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:1:0.3%:193,143,0,1 0/0:.:337:336:1:0.3%:193,143,0,1 -Example1_ref 992 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:194,139,0,0 0/0:.:333:333:0:0%:194,139,0,0 -Example1_ref 993 . G . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:192,141,0,0 0/0:.:333:333:0:0%:192,141,0,0 -Example1_ref 994 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:199,138,0,0 0/0:.:337:337:0:0%:199,138,0,0 -Example1_ref 995 . ATCC A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:198,136,0,1 0/0:.:335:334:1:0.3%:198,136,0,1 -Example1_ref 996 . T C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=6.8807E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:327:2:0.61%:191,136,2,0 0/0:.:331:327:2:0.61%:191,136,2,0 -Example1_ref 997 . C . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:191,132,0,0 0/0:.:323:323:0:0%:191,132,0,0 -Example1_ref 998 . C . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:188,129,0,0 0/0:.:317:317:0:0%:188,129,0,0 -Example1_ref 999 . T . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:188,130,0,0 0/0:.:318:318:0:0%:188,130,0,0 -Example1_ref 1000 . C A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:189,132,0,1 0/0:.:322:321:1:0.31%:189,132,0,1 -Example1_ref 1001 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:189,135,0,0 0/0:.:324:324:0:0%:189,135,0,0 -Example1_ref 1002 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:185,136,0,0 0/0:.:321:321:0:0%:185,136,0,0 -Example1_ref 1003 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:185,133,0,0 0/0:.:318:318:0:0%:185,133,0,0 -Example1_ref 1004 . G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:181,131,0,0 0/0:.:312:312:0:0%:181,131,0,0 -Example1_ref 1005 . A C . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:1:0.33%:178,128,0,1 0/0:.:307:306:1:0.33%:178,128,0,1 -Example1_ref 1006 . T A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:192,129,0,1 0/0:.:322:321:1:0.31%:192,129,0,1 -Example1_ref 1007 . C A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:194,129,0,1 0/0:.:325:323:1:0.31%:194,129,0,1 -Example1_ref 1008 . C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:193,136,0,0 0/0:.:329:329:0:0%:193,136,0,0 -Example1_ref 1009 . C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:196,135,0,0 0/0:.:331:331:0:0%:196,135,0,0 -Example1_ref 1010 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:198,135,0,0 0/0:.:333:333:0:0%:198,135,0,0 -Example1_ref 1011 . T C . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:1:0.3%:195,134,0,1 0/0:.:330:329:1:0.3%:195,134,0,1 -Example1_ref 1012 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:194,138,0,0 0/0:.:333:332:0:0%:194,138,0,0 -Example1_ref 1013 . C . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:195,140,0,0 0/0:.:335:335:0:0%:195,140,0,0 -Example1_ref 1014 . A AC . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:328:1:0.3%:194,134,1,0 0/0:.:330:328:1:0.3%:194,134,1,0 -Example1_ref 1015 . T G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:194,132,0,1 0/0:.:327:326:1:0.31%:194,132,0,1 -Example1_ref 1016 . G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:185,127,0,0 0/0:.:312:312:0:0%:185,127,0,0 -Example1_ref 1017 . G A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:184,129,1,0 0/0:.:314:313:1:0.32%:184,129,1,0 -Example1_ref 1018 . TGAG T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:1:0.32%:190,126,1,0 0/0:.:317:316:1:0.32%:190,126,1,0 -Example1_ref 1019 . G T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:179,124,1,0 0/0:.:304:303:1:0.33%:179,124,1,0 -Example1_ref 1020 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:184,126,0,0 0/0:.:310:310:0:0%:184,126,0,0 -Example1_ref 1021 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:173,124,0,0 0/0:.:297:297:0:0%:173,124,0,0 -Example1_ref 1022 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:174,126,0,0 0/0:.:300:300:0:0%:174,126,0,0 -Example1_ref 1023 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:176,127,0,0 0/0:.:304:303:0:0%:176,127,0,0 -Example1_ref 1024 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:178,122,0,0 0/0:.:300:300:0:0%:178,122,0,0 -Example1_ref 1025 . G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:177,124,0,0 0/0:.:301:301:0:0%:177,124,0,0 -Example1_ref 1026 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:179,122,0,0 0/0:.:301:301:0:0%:179,122,0,0 -Example1_ref 1027 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:178,127,0,0 0/0:.:305:305:0:0%:178,127,0,0 -Example1_ref 1028 . C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:176,121,0,0 0/0:.:297:297:0:0%:176,121,0,0 -Example1_ref 1029 . C . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:175,123,0,0 0/0:.:298:298:0:0%:175,123,0,0 -Example1_ref 1030 . A C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:179,125,0,1 0/0:.:305:304:1:0.33%:179,125,0,1 -Example1_ref 1031 . G . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:176,123,0,0 0/0:.:299:299:0:0%:176,123,0,0 -Example1_ref 1032 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:294:294:0:0%:171,123,0,0 -Example1_ref 1033 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:182,123,0,0 0/0:.:305:305:0:0%:182,123,0,0 -Example1_ref 1034 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:178,124,0,0 0/0:.:302:302:0:0%:178,124,0,0 -Example1_ref 1035 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:179,125,0,0 0/0:.:304:304:0:0%:179,125,0,0 -Example1_ref 1036 . C . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:182,122,0,0 0/0:.:304:304:0:0%:182,122,0,0 -Example1_ref 1037 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:182,126,0,0 0/0:.:308:308:0:0%:182,126,0,0 -Example1_ref 1038 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:183,129,0,0 0/0:.:312:312:0:0%:183,129,0,0 -Example1_ref 1039 . T G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=6.8812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:303:2:0.66%:183,120,0,2 0/0:.:305:303:2:0.66%:183,120,0,2 -Example1_ref 1040 . C . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:180,122,0,0 0/0:.:302:302:0:0%:180,122,0,0 -Example1_ref 1041 . C . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:173,122,0,0 0/0:.:295:295:0:0%:173,122,0,0 -Example1_ref 1042 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:179,123,0,0 0/0:.:302:302:0:0%:179,123,0,0 -Example1_ref 1043 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:181,122,0,0 0/0:.:304:303:0:0%:181,122,0,0 -Example1_ref 1044 . C . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:179,119,0,0 0/0:.:298:298:0:0%:179,119,0,0 -Example1_ref 1045 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:184,121,0,0 0/0:.:305:305:0:0%:184,121,0,0 -Example1_ref 1046 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:189,122,0,0 0/0:.:311:311:0:0%:189,122,0,0 -Example1_ref 1047 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:187,122,0,0 0/0:.:309:309:0:0%:187,122,0,0 -Example1_ref 1048 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:186,121,0,0 0/0:.:307:307:0:0%:186,121,0,0 -Example1_ref 1049 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:184,123,0,0 0/0:.:307:307:0:0%:184,123,0,0 -Example1_ref 1050 . G . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:184,123,0,0 0/0:.:307:307:0:0%:184,123,0,0 -Example1_ref 1051 . G T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=6.57E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:311:3:0.96%:188,123,3,0 0/0:.:314:311:3:0.96%:188,123,3,0 -Example1_ref 1052 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:191,118,0,0 0/0:.:309:309:0:0%:191,118,0,0 -Example1_ref 1053 . G . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:191,118,0,0 0/0:.:309:309:0:0%:191,118,0,0 -Example1_ref 1054 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:192,117,0,0 0/0:.:309:309:0:0%:192,117,0,0 -Example1_ref 1055 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:192,107,0,0 0/0:.:299:299:0:0%:192,107,0,0 -Example1_ref 1056 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:195,106,0,0 0/0:.:301:301:0:0%:195,106,0,0 -Example1_ref 1057 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:201,109,0,0 0/0:.:310:310:0:0%:201,109,0,0 -Example1_ref 1058 . G . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:199,114,0,0 0/0:.:313:313:0:0%:199,114,0,0 -Example1_ref 1059 . C T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:202,109,1,0 0/0:.:312:311:1:0.32%:202,109,1,0 -Example1_ref 1060 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:200,116,0,0 0/0:.:316:316:0:0%:200,116,0,0 -Example1_ref 1061 . A T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:192,116,0,1 0/0:.:309:308:1:0.32%:192,116,0,1 -Example1_ref 1062 . TG T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:197,115,1,0 0/0:.:313:312:1:0.32%:197,115,1,0 -Example1_ref 1063 . G . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:194,117,0,0 0/0:.:311:311:0:0%:194,117,0,0 -Example1_ref 1064 . G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:191,114,0,0 0/0:.:305:305:0:0%:191,114,0,0 -Example1_ref 1065 . G . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:190,117,0,0 0/0:.:307:307:0:0%:190,117,0,0 -Example1_ref 1066 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:193,116,0,0 0/0:.:309:309:0:0%:193,116,0,0 -Example1_ref 1067 . G . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:194,119,0,0 0/0:.:313:313:0:0%:194,119,0,0 -Example1_ref 1068 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:195,113,0,0 0/0:.:308:308:0:0%:195,113,0,0 -Example1_ref 1069 . G . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:193,126,0,0 0/0:.:319:319:0:0%:193,126,0,0 -Example1_ref 1070 . G . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:187,127,0,0 0/0:.:314:314:0:0%:187,127,0,0 -Example1_ref 1071 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:190,120,0,0 0/0:.:310:310:0:0%:190,120,0,0 -Example1_ref 1072 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:193,127,0,0 0/0:.:320:320:0:0%:193,127,0,0 -Example1_ref 1073 . GT G . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:1:0.32%:191,123,1,0 0/0:.:315:314:1:0.32%:191,123,1,0 -Example1_ref 1074 . T . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:317:0:0%:192,125,0,0 0/0:.:318:317:0:0%:192,125,0,0 -Example1_ref 1075 . T . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:0:0%:192,123,0,0 0/0:.:316:315:0:0%:192,123,0,0 -Example1_ref 1076 . G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:199,126,0,0 0/0:.:325:325:0:0%:199,126,0,0 -Example1_ref 1077 . T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:203,125,0,0 0/0:.:328:328:0:0%:203,125,0,0 -Example1_ref 1078 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:199,127,0,0 0/0:.:326:326:0:0%:199,127,0,0 -Example1_ref 1079 . C A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:318:1:0.31%:199,119,0,1 0/0:.:320:318:1:0.31%:199,119,0,1 -Example1_ref 1080 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:200,126,0,0 0/0:.:326:326:0:0%:200,126,0,0 -Example1_ref 1081 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:201,122,0,0 0/0:.:323:323:0:0%:201,122,0,0 -Example1_ref 1082 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:0:0%:200,125,0,0 0/0:.:326:325:0:0%:200,125,0,0 -Example1_ref 1083 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:326:0:0%:200,126,0,0 0/0:.:328:326:0:0%:200,126,0,0 -Example1_ref 1084 . C . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:206,131,0,0 0/0:.:337:337:0:0%:206,131,0,0 -Example1_ref 1085 . A AG . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:1:0.3%:206,130,0,1 0/0:.:337:336:1:0.3%:206,130,0,1 -Example1_ref 1086 . G . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:200,129,0,0 0/0:.:329:329:0:0%:200,129,0,0 -Example1_ref 1087 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:202,129,0,0 0/0:.:331:331:0:0%:202,129,0,0 -Example1_ref 1088 . G . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:197,132,0,0 0/0:.:329:329:0:0%:197,132,0,0 -Example1_ref 1089 . C . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:0:0%:204,130,0,0 0/0:.:335:334:0:0%:204,130,0,0 -Example1_ref 1090 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:203,135,0,0 0/0:.:338:338:0:0%:203,135,0,0 -Example1_ref 1091 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:215,135,0,0 0/0:.:350:350:0:0%:215,135,0,0 -Example1_ref 1092 . T TTAGA . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:214,137,1,0 0/0:.:353:351:1:0.28%:214,137,1,0 -Example1_ref 1093 . G . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:211,136,0,0 0/0:.:347:347:0:0%:211,136,0,0 -Example1_ref 1094 . C A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:217,130,0,1 0/0:.:348:347:1:0.29%:217,130,0,1 -Example1_ref 1095 . A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:215,144,0,0 0/0:.:359:359:0:0%:215,144,0,0 -Example1_ref 1096 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:221,145,0,0 0/0:.:366:366:0:0%:221,145,0,0 -Example1_ref 1097 . C . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:219,139,0,0 0/0:.:358:358:0:0%:219,139,0,0 -Example1_ref 1098 . A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:213,144,0,0 0/0:.:357:357:0:0%:213,144,0,0 -Example1_ref 1099 . G A . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:363:1:0.27%:220,143,1,0 0/0:.:365:363:1:0.27%:220,143,1,0 -Example1_ref 1100 . T . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:219,138,0,0 0/0:.:357:357:0:0%:219,138,0,0 -Example1_ref 1101 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:219,139,0,0 0/0:.:358:358:0:0%:219,139,0,0 -Example1_ref 1102 . T . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:218,139,0,0 0/0:.:357:357:0:0%:218,139,0,0 -Example1_ref 1103 . G . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:221,145,0,0 0/0:.:366:366:0:0%:221,145,0,0 -Example1_ref 1104 . T C . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:222,138,1,0 0/0:.:361:360:1:0.28%:222,138,1,0 -Example1_ref 1105 . G . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:211,140,0,0 0/0:.:351:351:0:0%:211,140,0,0 -Example1_ref 1106 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:214,140,0,0 0/0:.:354:354:0:0%:214,140,0,0 -Example1_ref 1107 . C CA . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:216,141,0,1 0/0:.:358:357:1:0.28%:216,141,0,1 -Example1_ref 1108 . G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:217,140,0,0 0/0:.:357:357:0:0%:217,140,0,0 -Example1_ref 1109 . G . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:217,139,0,0 0/0:.:356:356:0:0%:217,139,0,0 -Example1_ref 1110 . G T . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:217,141,1,0 0/0:.:359:358:1:0.28%:217,141,1,0 -Example1_ref 1111 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:219,142,0,0 0/0:.:361:361:0:0%:219,142,0,0 -Example1_ref 1112 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:217,144,0,0 0/0:.:361:361:0:0%:217,144,0,0 -Example1_ref 1113 . G . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:230,142,0,0 0/0:.:372:372:0:0%:230,142,0,0 -Example1_ref 1114 . A T . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:1:0.26%:233,145,1,0 0/0:.:379:378:1:0.26%:233,145,1,0 -Example1_ref 1115 . T . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:231,142,0,0 0/0:.:373:373:0:0%:231,142,0,0 -Example1_ref 1116 . C . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:228,143,0,0 0/0:.:371:371:0:0%:228,143,0,0 -Example1_ref 1117 . A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:227,160,0,0 0/0:.:387:387:0:0%:227,160,0,0 -Example1_ref 1118 . T C . PASS DP=812;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:404:1:0.25%:243,161,1,0 0/0:.:406:404:1:0.25%:243,161,1,0 -Example1_ref 1119 . A . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:241,169,0,0 0/0:.:410:410:0:0%:241,169,0,0 -Example1_ref 1120 . T C . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:396:1:0.25%:232,164,1,0 0/0:.:397:396:1:0.25%:232,164,1,0 -Example1_ref 1121 . CT C . PASS DP=806;SS=0;SSC=0;GPV=1E0;SPV=6.8797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:401:2:0.5%:237,164,2,0 0/0:.:403:401:2:0.5%:237,164,2,0 -Example1_ref 1122 . TA T . PASS DP=818;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:405:1:0.25%:238,167,1,0 0/0:.:409:405:1:0.25%:238,167,1,0 -Example1_ref 1123 . A . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:0:0%:244,170,0,0 0/0:.:415:414:0:0%:244,170,0,0 -Example1_ref 1124 . G . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:244,173,0,0 0/0:.:417:417:0:0%:244,173,0,0 -Example1_ref 1125 . A ATTG . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:250,168,1,0 0/0:.:419:418:1:0.24%:250,168,1,0 -Example1_ref 1126 . T . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:252,172,0,0 0/0:.:424:424:0:0%:252,172,0,0 -Example1_ref 1127 . A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:251,170,0,0 0/0:.:421:421:0:0%:251,170,0,0 -Example1_ref 1128 . T . PASS DP=826;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:413:0:0%:247,166,0,0 0/0:.:413:413:0:0%:247,166,0,0 -Example1_ref 1129 . T . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:250,166,0,0 0/0:.:416:416:0:0%:250,166,0,0 -Example1_ref 1130 . G T . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:252,173,1,0 0/0:.:426:425:1:0.23%:252,173,1,0 -Example1_ref 1131 . A . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:251,173,0,0 0/0:.:424:424:0:0%:251,173,0,0 -Example1_ref 1132 . C . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:255,168,0,0 0/0:.:423:423:0:0%:255,168,0,0 -Example1_ref 1133 . A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:253,176,0,0 0/0:.:429:429:0:0%:253,176,0,0 -Example1_ref 1134 . T . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:252,170,0,0 0/0:.:422:422:0:0%:252,170,0,0 -Example1_ref 1135 . G . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:262,175,0,0 0/0:.:437:437:0:0%:262,175,0,0 -Example1_ref 1136 . T . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:262,175,0,0 0/0:.:437:437:0:0%:262,175,0,0 -Example1_ref 1137 . T C . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:261,167,1,0 0/0:.:429:428:1:0.23%:261,167,1,0 -Example1_ref 1138 . C . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:255,168,0,0 0/0:.:423:423:0:0%:255,168,0,0 -Example1_ref 1139 . C A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:427:1:0.23%:260,167,0,1 0/0:.:429:427:1:0.23%:260,167,0,1 -Example1_ref 1140 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:263,179,0,0 0/0:.:442:442:0:0%:263,179,0,0 -Example1_ref 1141 . A . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:262,179,0,0 0/0:.:441:441:0:0%:262,179,0,0 -Example1_ref 1142 . C . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:0:0%:263,176,0,0 0/0:.:440:439:0:0%:263,176,0,0 -Example1_ref 1143 . T . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:260,174,0,0 0/0:.:434:434:0:0%:260,174,0,0 -Example1_ref 1144 . A T . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:265,176,1,0 0/0:.:442:441:1:0.23%:265,176,1,0 -Example1_ref 1145 . G . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:261,174,0,0 0/0:.:435:435:0:0%:261,174,0,0 -Example1_ref 1146 . G . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:256,172,0,0 0/0:.:428:428:0:0%:256,172,0,0 -Example1_ref 1147 . A T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:1:0.23%:259,178,1,0 0/0:.:438:437:1:0.23%:259,178,1,0 -Example1_ref 1148 . C A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:430:1:0.23%:256,174,0,1 0/0:.:431:430:1:0.23%:256,174,0,1 -Example1_ref 1149 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:259,172,0,0 0/0:.:431:431:0:0%:259,172,0,0 -Example1_ref 1150 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:257,174,0,0 0/0:.:431:431:0:0%:257,174,0,0 -Example1_ref 1151 . G . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:258,178,0,0 0/0:.:436:436:0:0%:258,178,0,0 -Example1_ref 1152 . C . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:268,174,0,0 0/0:.:442:442:0:0%:268,174,0,0 -Example1_ref 1153 . A . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:266,186,0,0 0/0:.:452:452:0:0%:266,186,0,0 -Example1_ref 1154 . G . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:271,186,0,0 0/0:.:457:457:0:0%:271,186,0,0 -Example1_ref 1155 . T A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:272,182,1,0 0/0:.:455:454:1:0.22%:272,182,1,0 -Example1_ref 1156 . A G . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:271,183,0,1 0/0:.:455:454:1:0.22%:271,183,0,1 -Example1_ref 1157 . G . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:273,183,0,0 0/0:.:456:456:0:0%:273,183,0,0 -Example1_ref 1158 . C CTGTCTCTTATA . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:272,168,1,0 0/0:.:441:440:1:0.23%:272,168,1,0 -Example1_ref 1159 . A . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:0:0%:274,189,0,0 0/0:.:464:463:0:0%:274,189,0,0 -Example1_ref 1160 . C . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:277,184,0,0 0/0:.:461:461:0:0%:277,184,0,0 -Example1_ref 1161 . G . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:274,187,0,0 0/0:.:461:461:0:0%:274,187,0,0 -Example1_ref 1162 . T A . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:1:0.22%:274,184,0,1 0/0:.:459:458:1:0.22%:274,184,0,1 -Example1_ref 1163 . G . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:260,191,0,0 0/0:.:451:451:0:0%:260,191,0,0 -Example1_ref 1164 . A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:266,189,0,0 0/0:.:455:455:0:0%:266,189,0,0 -Example1_ref 1165 . T . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:271,186,0,0 0/0:.:457:457:0:0%:271,186,0,0 -Example1_ref 1166 . G . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:267,186,0,0 0/0:.:453:453:0:0%:267,186,0,0 -Example1_ref 1167 . C A . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:268,181,0,1 0/0:.:450:449:1:0.22%:268,181,0,1 -Example1_ref 1168 . C . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:264,184,0,0 0/0:.:448:448:0:0%:264,184,0,0 -Example1_ref 1169 . G . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:270,190,0,0 0/0:.:460:460:0:0%:270,190,0,0 -Example1_ref 1170 . A G . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:264,190,0,1 0/0:.:455:454:1:0.22%:264,190,0,1 -Example1_ref 1171 . A . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:265,192,0,0 0/0:.:457:457:0:0%:265,192,0,0 -Example1_ref 1172 . G . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:266,192,0,0 0/0:.:458:458:0:0%:266,192,0,0 -Example1_ref 1173 . C . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:270,187,0,0 0/0:.:457:457:0:0%:270,187,0,0 -Example1_ref 1174 . T . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:262,187,0,0 0/0:.:449:449:0:0%:262,187,0,0 -Example1_ref 1175 . C . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:270,194,0,0 0/0:.:464:464:0:0%:270,194,0,0 -Example1_ref 1176 . A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:268,197,0,0 0/0:.:465:465:0:0%:268,197,0,0 -Example1_ref 1177 . G . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:264,196,0,0 0/0:.:460:460:0:0%:264,196,0,0 -Example1_ref 1178 . A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:256,193,0,0 0/0:.:449:449:0:0%:256,193,0,0 -Example1_ref 1179 . T . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:266,198,0,0 0/0:.:464:464:0:0%:266,198,0,0 -Example1_ref 1180 . G . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:258,194,0,0 0/0:.:452:452:0:0%:258,194,0,0 -Example1_ref 1181 . A . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:255,193,0,0 0/0:.:448:448:0:0%:255,193,0,0 -Example1_ref 1182 . G . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:258,192,0,0 0/0:.:450:450:0:0%:258,192,0,0 -Example1_ref 1183 . C . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:451:0:0%:257,194,0,0 0/0:.:452:451:0:0%:257,194,0,0 -Example1_ref 1184 . T A . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:453:1:0.22%:258,195,0,1 0/0:.:456:453:1:0.22%:258,195,0,1 -Example1_ref 1185 . C A . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=6.8794E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:429:2:0.46%:263,166,0,2 0/0:.:432:429:2:0.46%:263,166,0,2 -Example1_ref 1186 . A . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:0:0%:262,201,0,0 0/0:.:464:463:0:0%:262,201,0,0 -Example1_ref 1187 . A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:264,201,0,0 0/0:.:465:465:0:0%:264,201,0,0 -Example1_ref 1188 . C . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:258,197,0,0 0/0:.:455:455:0:0%:258,197,0,0 -Example1_ref 1189 . A AG . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:1:0.22%:263,200,0,1 0/0:.:464:463:1:0.22%:263,200,0,1 -Example1_ref 1190 . C T . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:465:1:0.21%:265,200,0,1 0/0:.:466:465:1:0.21%:265,200,0,1 -Example1_ref 1191 . T . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:265,197,0,0 0/0:.:462:462:0:0%:265,197,0,0 -Example1_ref 1192 . G A . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:461:1:0.22%:260,201,0,1 0/0:.:462:461:1:0.22%:260,201,0,1 -Example1_ref 1193 . G . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:258,203,0,0 0/0:.:461:461:0:0%:258,203,0,0 -Example1_ref 1194 . A G . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=6.879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:471:2:0.42%:263,208,1,1 0/0:.:473:471:2:0.42%:263,208,1,1 -Example1_ref 1195 . A G . PASS DP=940;SS=0;SSC=0;GPV=1E0;SPV=6.879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:468:2:0.43%:262,206,0,2 0/0:.:470:468:2:0.43%:262,206,0,2 -Example1_ref 1196 . G . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:256,208,0,0 0/0:.:464:464:0:0%:256,208,0,0 -Example1_ref 1197 . A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:254,211,0,0 0/0:.:465:465:0:0%:254,211,0,0 -Example1_ref 1198 . T . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:259,210,0,0 0/0:.:469:469:0:0%:259,210,0,0 -Example1_ref 1199 . G . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:250,211,0,0 0/0:.:461:461:0:0%:250,211,0,0 -Example1_ref 1200 . A . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:253,216,0,0 0/0:.:469:469:0:0%:253,216,0,0 -Example1_ref 1201 . A . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:0:0%:259,216,0,0 0/0:.:476:475:0:0%:259,216,0,0 -Example1_ref 1202 . C . PASS DP=948;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:474:0:0%:259,215,0,0 0/0:.:474:474:0:0%:259,215,0,0 -Example1_ref 1203 . T . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:263,212,0,0 0/0:.:475:475:0:0%:263,212,0,0 -Example1_ref 1204 . T . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:263,219,0,0 0/0:.:482:482:0:0%:263,219,0,0 -Example1_ref 1205 . G . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:257,221,0,0 0/0:.:478:478:0:0%:257,221,0,0 -Example1_ref 1206 . G . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:254,222,0,0 0/0:.:476:476:0:0%:254,222,0,0 -Example1_ref 1207 . A G . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:257,227,0,1 0/0:.:485:484:1:0.21%:257,227,0,1 -Example1_ref 1208 . GT G . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:479:1:0.21%:255,224,0,1 0/0:.:481:479:1:0.21%:255,224,0,1 -Example1_ref 1209 . T C . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:477:1:0.21%:254,223,0,1 0/0:.:478:477:1:0.21%:254,223,0,1 -Example1_ref 1210 . T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:259,226,0,0 0/0:.:485:485:0:0%:259,226,0,0 -Example1_ref 1211 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:262,232,0,0 0/0:.:494:494:0:0%:262,232,0,0 -Example1_ref 1212 . C . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:263,224,0,0 0/0:.:487:487:0:0%:263,224,0,0 -Example1_ref 1213 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:256,238,0,0 0/0:.:494:494:0:0%:256,238,0,0 -Example1_ref 1214 . C . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:260,229,0,0 0/0:.:489:489:0:0%:260,229,0,0 -Example1_ref 1215 . A . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:258,239,0,0 0/0:.:497:497:0:0%:258,239,0,0 -Example1_ref 1216 . C A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:257,235,1,0 0/0:.:493:492:1:0.2%:257,235,1,0 -Example1_ref 1217 . G . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:254,237,0,0 0/0:.:491:491:0:0%:254,237,0,0 -Example1_ref 1218 . A . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:256,239,0,0 0/0:.:495:495:0:0%:256,239,0,0 -Example1_ref 1219 . A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:255,236,0,0 0/0:.:491:491:0:0%:255,236,0,0 -Example1_ref 1220 . G . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:254,233,0,0 0/0:.:487:487:0:0%:254,233,0,0 -Example1_ref 1221 . C CTGT . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:254,230,1,0 0/0:.:485:484:1:0.21%:254,230,1,0 -Example1_ref 1222 . C A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:483:1:0.21%:251,232,0,1 0/0:.:485:483:1:0.21%:251,232,0,1 -Example1_ref 1223 . A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:256,236,0,0 0/0:.:492:492:0:0%:256,236,0,0 -Example1_ref 1224 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:252,236,0,0 0/0:.:488:488:0:0%:252,236,0,0 -Example1_ref 1225 . A . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:253,236,0,0 0/0:.:489:489:0:0%:253,236,0,0 -Example1_ref 1226 . G T . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:249,236,1,0 0/0:.:486:485:1:0.21%:249,236,1,0 -Example1_ref 1227 . A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:254,237,0,0 0/0:.:491:491:0:0%:254,237,0,0 -Example1_ref 1228 . A C . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:254,234,0,1 0/0:.:490:488:1:0.2%:254,234,0,1 -Example1_ref 1229 . A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:256,235,0,0 0/0:.:491:491:0:0%:256,235,0,0 -Example1_ref 1230 . G . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:251,236,0,0 0/0:.:487:487:0:0%:251,236,0,0 -Example1_ref 1231 . C A . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:247,228,0,1 0/0:.:476:475:1:0.21%:247,228,0,1 -Example1_ref 1232 . C A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:252,233,1,0 0/0:.:486:485:1:0.21%:252,233,1,0 -Example1_ref 1233 . T . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:250,236,0,0 0/0:.:486:486:0:0%:250,236,0,0 -Example1_ref 1234 . G . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:247,238,0,0 0/0:.:485:485:0:0%:247,238,0,0 -Example1_ref 1235 . A G . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:1:0.21%:243,239,0,1 0/0:.:483:482:1:0.21%:243,239,0,1 -Example1_ref 1236 . A G . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:240,244,1,0 0/0:.:485:484:1:0.21%:240,244,1,0 -Example1_ref 1237 . A C . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:481:1:0.21%:238,243,1,0 0/0:.:482:481:1:0.21%:238,243,1,0 -Example1_ref 1238 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:243,245,0,0 0/0:.:488:488:0:0%:243,245,0,0 -Example1_ref 1239 . G A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:489:1:0.2%:244,245,1,0 0/0:.:491:489:1:0.2%:244,245,1,0 -Example1_ref 1240 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:240,248,0,0 0/0:.:488:488:0:0%:240,248,0,0 -Example1_ref 1241 . C CAG . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:490:2:0.41%:246,244,0,2 0/0:.:492:490:2:0.41%:246,244,0,2 -Example1_ref 1242 . A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:245,246,0,0 0/0:.:491:491:0:0%:245,246,0,0 -Example1_ref 1243 . T A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:245,245,0,1 0/0:.:491:490:1:0.2%:245,245,0,1 -Example1_ref 1244 . A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:246,252,0,0 0/0:.:498:498:0:0%:246,252,0,0 -Example1_ref 1245 . T . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:241,250,0,0 0/0:.:491:491:0:0%:241,250,0,0 -Example1_ref 1246 . A AAGAGAC . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:488:1:0.2%:237,251,0,1 0/0:.:489:488:1:0.2%:237,251,0,1 -Example1_ref 1247 . A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:238,248,0,0 0/0:.:486:486:0:0%:238,248,0,0 -Example1_ref 1248 . G . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:233,247,0,0 0/0:.:480:480:0:0%:233,247,0,0 -Example1_ref 1249 . G T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:232,252,1,0 0/0:.:485:484:1:0.21%:232,252,1,0 -Example1_ref 1250 . A . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:240,242,0,0 0/0:.:482:482:0:0%:240,242,0,0 -Example1_ref 1251 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:258,242,0,0 0/0:.:500:500:0:0%:258,242,0,0 -Example1_ref 1252 . C A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:251,240,1,0 0/0:.:492:491:1:0.2%:251,240,1,0 -Example1_ref 1253 . A . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:257,240,0,0 0/0:.:497:497:0:0%:257,240,0,0 -Example1_ref 1254 . TA T . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:251,241,1,0 0/0:.:493:492:1:0.2%:251,241,1,0 -Example1_ref 1255 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:253,247,0,0 0/0:.:500:500:0:0%:253,247,0,0 -Example1_ref 1256 . A AGAG . PASS DP=1010;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:504:1:0.2%:255,249,0,1 0/0:.:505:504:1:0.2%:255,249,0,1 -Example1_ref 1257 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:253,249,0,0 0/0:.:502:502:0:0%:253,249,0,0 -Example1_ref 1258 . CAG C . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:501:1:0.2%:252,249,1,0 0/0:.:503:501:1:0.2%:252,249,1,0 -Example1_ref 1259 . A . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:255,240,0,0 0/0:.:495:495:0:0%:255,240,0,0 -Example1_ref 1260 . GCTCA G . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:253,236,0,1 0/0:.:490:489:1:0.2%:253,236,0,1 -Example1_ref 1261 . C A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:255,236,0,1 0/0:.:492:491:1:0.2%:255,236,0,1 -Example1_ref 1262 . T . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:246,227,0,0 0/0:.:473:473:0:0%:246,227,0,0 -Example1_ref 1263 . C T . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:481:1:0.21%:249,232,0,1 0/0:.:482:481:1:0.21%:249,232,0,1 -Example1_ref 1264 . A . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:255,241,0,0 0/0:.:496:496:0:0%:255,241,0,0 -Example1_ref 1265 . G . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:242,240,0,0 0/0:.:482:482:0:0%:242,240,0,0 -Example1_ref 1266 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:247,241,0,0 0/0:.:488:488:0:0%:247,241,0,0 -Example1_ref 1267 . G T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:239,245,0,1 0/0:.:485:484:1:0.21%:239,245,0,1 -Example1_ref 1268 . A . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:251,246,0,0 0/0:.:497:497:0:0%:251,246,0,0 -Example1_ref 1269 . C CCTGTCTCTT . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:481:1:0.21%:249,232,1,0 0/0:.:482:481:1:0.21%:249,232,1,0 -Example1_ref 1270 . A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:254,237,0,0 0/0:.:491:491:0:0%:254,237,0,0 -Example1_ref 1271 . T . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:246,236,0,0 0/0:.:482:482:0:0%:246,236,0,0 -Example1_ref 1272 . C A . PASS DP=948;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:473:1:0.21%:243,230,0,1 0/0:.:474:473:1:0.21%:243,230,0,1 -Example1_ref 1273 . T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:248,237,0,0 0/0:.:485:485:0:0%:248,237,0,0 -Example1_ref 1274 . T . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:481:0:0%:243,238,0,0 0/0:.:481:481:0:0%:243,238,0,0 -Example1_ref 1275 . T C . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:1:0.21%:244,228,0,1 0/0:.:473:472:1:0.21%:244,228,0,1 -Example1_ref 1276 . C A . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:478:2:0.42%:249,229,0,2 0/0:.:481:478:2:0.42%:249,229,0,2 -Example1_ref 1277 . C . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:247,244,0,0 0/0:.:491:491:0:0%:247,244,0,0 -Example1_ref 1278 . A . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:257,244,0,0 0/0:.:501:501:0:0%:257,244,0,0 -Example1_ref 1279 . T A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:485:1:0.21%:250,235,0,1 0/0:.:487:485:1:0.21%:250,235,0,1 -Example1_ref 1280 . A G . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:248,239,0,1 0/0:.:488:487:1:0.2%:248,239,0,1 -Example1_ref 1281 . A . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:239,241,0,0 0/0:.:480:480:0:0%:239,241,0,0 -Example1_ref 1282 . A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:245,241,0,0 0/0:.:486:486:0:0%:245,241,0,0 -Example1_ref 1283 . C . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:245,243,0,0 0/0:.:488:488:0:0%:245,243,0,0 -Example1_ref 1284 . C . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:234,242,0,0 0/0:.:476:476:0:0%:234,242,0,0 -Example1_ref 1285 . A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:247,238,0,0 0/0:.:485:485:0:0%:247,238,0,0 -Example1_ref 1286 . A . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:235,237,0,0 0/0:.:472:472:0:0%:235,237,0,0 -Example1_ref 1287 . C . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:242,238,0,0 0/0:.:480:480:0:0%:242,238,0,0 -Example1_ref 1288 . A G . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:474:1:0.21%:235,239,1,0 0/0:.:475:474:1:0.21%:235,239,1,0 -Example1_ref 1289 . G A . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:1:0.22%:226,237,0,1 0/0:.:464:463:1:0.22%:226,237,0,1 -Example1_ref 1290 . G . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:215,235,0,0 0/0:.:450:450:0:0%:215,235,0,0 -Example1_ref 1291 . T . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:222,234,0,0 0/0:.:456:456:0:0%:222,234,0,0 -Example1_ref 1292 . G . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:215,234,0,0 0/0:.:449:449:0:0%:215,234,0,0 -Example1_ref 1293 . G . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:212,236,0,0 0/0:.:448:448:0:0%:212,236,0,0 -Example1_ref 1294 . A . PASS DP=934;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:225,242,0,0 0/0:.:467:467:0:0%:225,242,0,0 -Example1_ref 1295 . T . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:217,237,0,0 0/0:.:454:454:0:0%:217,237,0,0 -Example1_ref 1296 . C A . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:465:1:0.21%:223,242,1,0 0/0:.:466:465:1:0.21%:223,242,1,0 -Example1_ref 1297 . A . PASS DP=934;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:226,241,0,0 0/0:.:467:467:0:0%:226,241,0,0 -Example1_ref 1298 . G A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:245,239,1,0 0/0:.:485:484:1:0.21%:245,239,1,0 -Example1_ref 1299 . C A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:244,241,0,1 0/0:.:486:485:1:0.21%:244,241,0,1 -Example1_ref 1300 . C T . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:488:1:0.2%:242,246,1,0 0/0:.:489:488:1:0.2%:242,246,1,0 -Example1_ref 1301 . A T . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:248,249,1,0 0/0:.:498:497:1:0.2%:248,249,1,0 -Example1_ref 1302 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:248,247,0,0 0/0:.:495:495:0:0%:248,247,0,0 -Example1_ref 1303 . A . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:0:0%:245,251,0,0 0/0:.:497:496:0:0%:245,251,0,0 -Example1_ref 1304 . G . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:233,261,0,0 0/0:.:494:494:0:0%:233,261,0,0 -Example1_ref 1305 . A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:233,259,0,0 0/0:.:492:492:0:0%:233,259,0,0 -Example1_ref 1306 . GA G . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:224,264,1,0 0/0:.:490:488:1:0.2%:224,264,1,0 -Example1_ref 1307 . A . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:464:0:0%:222,242,0,0 0/0:.:466:464:0:0%:222,242,0,0 -Example1_ref 1308 . T C . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:452:1:0.22%:218,234,0,1 0/0:.:453:452:1:0.22%:218,234,0,1 -Example1_ref 1309 . G A . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=6.8792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:446:2:0.45%:208,238,0,2 0/0:.:448:446:2:0.45%:208,238,0,2 -Example1_ref 1310 . G T . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=6.8792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:449:2:0.44%:209,240,2,0 0/0:.:451:449:2:0.44%:209,240,2,0 -Example1_ref 1311 . C . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:215,234,0,0 0/0:.:449:449:0:0%:215,234,0,0 -Example1_ref 1312 . A . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:460:0:0%:216,244,0,0 0/0:.:461:460:0:0%:216,244,0,0 -Example1_ref 1313 . A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:214,241,0,0 0/0:.:455:455:0:0%:214,241,0,0 -Example1_ref 1314 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:211,239,0,0 0/0:.:450:450:0:0%:211,239,0,0 -Example1_ref 1315 . A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:211,238,0,0 0/0:.:449:449:0:0%:211,238,0,0 -Example1_ref 1316 . G . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:214,238,0,0 0/0:.:452:452:0:0%:214,238,0,0 -Example1_ref 1317 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:210,233,0,0 0/0:.:443:443:0:0%:210,233,0,0 -Example1_ref 1318 . T . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:212,233,0,0 0/0:.:445:445:0:0%:212,233,0,0 -Example1_ref 1319 . G . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:207,238,0,0 0/0:.:445:445:0:0%:207,238,0,0 -Example1_ref 1320 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:207,235,0,0 0/0:.:442:442:0:0%:207,235,0,0 -Example1_ref 1321 . A . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:208,238,0,0 0/0:.:446:446:0:0%:208,238,0,0 -Example1_ref 1322 . G T . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:440:1:0.23%:204,236,1,0 0/0:.:442:440:1:0.23%:204,236,1,0 -Example1_ref 1323 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:0:0%:211,231,0,0 0/0:.:443:442:0:0%:211,231,0,0 -Example1_ref 1324 . G . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:0:0%:203,231,0,0 0/0:.:435:434:0:0%:203,231,0,0 -Example1_ref 1325 . C . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:432:0:0%:206,226,0,0 0/0:.:433:432:0:0%:206,226,0,0 -Example1_ref 1326 . C . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:426:0:0%:198,228,0,0 0/0:.:426:426:0:0%:198,228,0,0 -Example1_ref 1327 . A AG . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:206,235,0,1 0/0:.:442:441:1:0.23%:206,235,0,1 -Example1_ref 1328 . G . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:199,234,0,0 0/0:.:433:433:0:0%:199,234,0,0 -Example1_ref 1329 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:202,241,0,0 0/0:.:443:443:0:0%:202,241,0,0 -Example1_ref 1330 . A . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:203,242,0,0 0/0:.:445:445:0:0%:203,242,0,0 -Example1_ref 1331 . C A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:199,243,1,0 0/0:.:443:442:1:0.23%:199,243,1,0 -Example1_ref 1332 . A . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:202,239,0,0 0/0:.:441:441:0:0%:202,239,0,0 -Example1_ref 1333 . A . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:206,240,0,0 0/0:.:446:446:0:0%:206,240,0,0 -Example1_ref 1334 . T . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:202,235,0,0 0/0:.:437:437:0:0%:202,235,0,0 -Example1_ref 1335 . T . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:201,232,0,0 0/0:.:433:433:0:0%:201,232,0,0 -Example1_ref 1336 . C T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:199,235,1,0 0/0:.:435:434:1:0.23%:199,235,1,0 -Example1_ref 1337 . G . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:198,239,0,0 0/0:.:437:437:0:0%:198,239,0,0 -Example1_ref 1338 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:203,237,0,0 0/0:.:440:440:0:0%:203,237,0,0 -Example1_ref 1339 . A . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:207,240,0,0 0/0:.:447:447:0:0%:207,240,0,0 -Example1_ref 1340 . C . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:207,236,0,0 0/0:.:443:443:0:0%:207,236,0,0 -Example1_ref 1341 . A . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:209,235,0,0 0/0:.:444:444:0:0%:209,235,0,0 -Example1_ref 1342 . T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:204,234,0,0 0/0:.:438:438:0:0%:204,234,0,0 -Example1_ref 1343 . A . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:201,227,0,0 0/0:.:428:428:0:0%:201,227,0,0 -Example1_ref 1344 . G C . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:423:1:0.24%:194,229,1,0 0/0:.:424:423:1:0.24%:194,229,1,0 -Example1_ref 1345 . A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:194,227,0,0 0/0:.:421:421:0:0%:194,227,0,0 -Example1_ref 1346 . G T . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:421:1:0.24%:192,229,0,1 0/0:.:422:421:1:0.24%:192,229,0,1 -Example1_ref 1347 . C . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:198,227,0,0 0/0:.:425:425:0:0%:198,227,0,0 -Example1_ref 1348 . A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:198,223,0,0 0/0:.:421:421:0:0%:198,223,0,0 -Example1_ref 1349 . G . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:200,225,0,0 0/0:.:425:425:0:0%:200,225,0,0 -Example1_ref 1350 . AC A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:203,225,0,1 0/0:.:429:428:1:0.23%:203,225,0,1 -Example1_ref 1351 . C . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:205,223,0,0 0/0:.:428:428:0:0%:205,223,0,0 -Example1_ref 1352 . C . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:426:0:0%:201,225,0,0 0/0:.:427:426:0:0%:201,225,0,0 -Example1_ref 1353 . A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:202,227,0,0 0/0:.:429:429:0:0%:202,227,0,0 -Example1_ref 1354 . A . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:201,227,0,0 0/0:.:428:428:0:0%:201,227,0,0 -Example1_ref 1355 . G . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:200,227,0,0 0/0:.:427:427:0:0%:200,227,0,0 -Example1_ref 1356 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:202,229,0,0 0/0:.:431:431:0:0%:202,229,0,0 -Example1_ref 1357 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:203,230,0,0 0/0:.:433:433:0:0%:203,230,0,0 -Example1_ref 1358 . C . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:205,223,0,0 0/0:.:428:428:0:0%:205,223,0,0 -Example1_ref 1359 . A . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:0:0%:205,219,0,0 0/0:.:425:424:0:0%:205,219,0,0 -Example1_ref 1360 . A T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:1:0.23%:207,232,1,0 0/0:.:440:439:1:0.23%:207,232,1,0 -Example1_ref 1361 . G . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:202,234,0,0 0/0:.:436:436:0:0%:202,234,0,0 -Example1_ref 1362 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:202,231,0,0 0/0:.:433:433:0:0%:202,231,0,0 -Example1_ref 1363 . T . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:203,226,0,0 0/0:.:429:429:0:0%:203,226,0,0 -Example1_ref 1364 . G . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:202,221,0,0 0/0:.:423:423:0:0%:202,221,0,0 -Example1_ref 1365 . G A . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:199,226,0,1 0/0:.:426:425:1:0.23%:199,226,0,1 -Example1_ref 1366 . G T . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:416:1:0.24%:193,223,1,0 0/0:.:418:416:1:0.24%:193,223,1,0 -Example1_ref 1367 . G . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:196,226,0,0 0/0:.:422:422:0:0%:196,226,0,0 -Example1_ref 1368 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:430:0:0%:202,228,0,0 0/0:.:431:430:0:0%:202,228,0,0 -Example1_ref 1369 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:205,228,0,0 0/0:.:433:433:0:0%:205,228,0,0 -Example1_ref 1370 . C A . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:435:1:0.23%:210,225,0,1 0/0:.:437:435:1:0.23%:210,225,0,1 -Example1_ref 1371 . C . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:208,224,0,0 0/0:.:432:432:0:0%:208,224,0,0 -Example1_ref 1372 . T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:210,228,0,0 0/0:.:438:438:0:0%:210,228,0,0 -Example1_ref 1373 . C . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:210,219,0,0 0/0:.:429:429:0:0%:210,219,0,0 -Example1_ref 1374 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:214,228,0,0 0/0:.:442:442:0:0%:214,228,0,0 -Example1_ref 1375 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:0:0%:211,230,0,0 0/0:.:442:441:0:0%:211,230,0,0 -Example1_ref 1376 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:214,226,0,0 0/0:.:440:440:0:0%:214,226,0,0 -Example1_ref 1377 . C A . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:212,228,1,0 0/0:.:441:440:1:0.23%:212,228,1,0 -Example1_ref 1378 . A G . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:213,230,0,1 0/0:.:444:443:1:0.23%:213,230,0,1 -Example1_ref 1379 . T . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:215,218,0,0 0/0:.:433:433:0:0%:215,218,0,0 -Example1_ref 1380 . C . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:225,225,0,0 0/0:.:450:450:0:0%:225,225,0,0 -Example1_ref 1381 . TATAA T . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:453:1:0.22%:223,230,1,0 0/0:.:454:453:1:0.22%:223,230,1,0 -Example1_ref 1382 . A . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:226,233,0,0 0/0:.:459:459:0:0%:226,233,0,0 -Example1_ref 1383 . T . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:223,231,0,0 0/0:.:454:454:0:0%:223,231,0,0 -Example1_ref 1384 . A AAGAGAC . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:226,223,0,1 0/0:.:450:449:1:0.22%:226,223,0,1 -Example1_ref 1385 . A T . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:1:0.22%:230,229,1,0 0/0:.:460:459:1:0.22%:230,229,1,0 -Example1_ref 1386 . T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:232,216,0,0 0/0:.:448:448:0:0%:232,216,0,0 -Example1_ref 1387 . C . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:235,229,0,0 0/0:.:464:464:0:0%:235,229,0,0 -Example1_ref 1388 . C . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:227,224,0,0 0/0:.:451:451:0:0%:227,224,0,0 -Example1_ref 1389 . A . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:237,226,0,0 0/0:.:463:463:0:0%:237,226,0,0 -Example1_ref 1390 . A . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:234,223,0,0 0/0:.:457:457:0:0%:234,223,0,0 -Example1_ref 1391 . T C . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:227,219,0,1 0/0:.:447:446:1:0.22%:227,219,0,1 -Example1_ref 1392 . A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:230,219,0,0 0/0:.:449:449:0:0%:230,219,0,0 -Example1_ref 1393 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:0:0%:231,218,0,0 0/0:.:450:449:0:0%:231,218,0,0 -Example1_ref 1394 . G C . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:232,222,1,0 0/0:.:455:454:1:0.22%:232,222,1,0 -Example1_ref 1395 . C . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:230,216,0,0 0/0:.:446:446:0:0%:230,216,0,0 -Example1_ref 1396 . T . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:225,214,0,0 0/0:.:439:439:0:0%:225,214,0,0 -Example1_ref 1397 . T A . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:438:1:0.23%:228,210,0,1 0/0:.:439:438:1:0.23%:228,210,0,1 -Example1_ref 1398 . G . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:226,229,0,0 0/0:.:455:455:0:0%:226,229,0,0 -Example1_ref 1399 . G T . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=6.8792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:447:2:0.45%:224,223,2,0 0/0:.:449:447:2:0.45%:224,223,2,0 -Example1_ref 1400 . G C . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:452:1:0.22%:224,228,1,0 0/0:.:454:452:1:0.22%:224,228,1,0 -Example1_ref 1401 . C . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:230,229,0,0 0/0:.:459:459:0:0%:230,229,0,0 -Example1_ref 1402 . A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:227,228,0,0 0/0:.:455:455:0:0%:227,228,0,0 -Example1_ref 1403 . G . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:230,224,0,0 0/0:.:454:454:0:0%:230,224,0,0 -Example1_ref 1404 . A . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:224,230,0,0 0/0:.:454:454:0:0%:224,230,0,0 -Example1_ref 1405 . A . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:230,231,0,0 0/0:.:461:461:0:0%:230,231,0,0 -Example1_ref 1406 . G . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:233,228,0,0 0/0:.:461:461:0:0%:233,228,0,0 -Example1_ref 1407 . G T . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:461:1:0.22%:231,230,1,0 0/0:.:462:461:1:0.22%:231,230,1,0 -Example1_ref 1408 . A . PASS DP=936;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:237,231,0,0 0/0:.:468:468:0:0%:237,231,0,0 -Example1_ref 1409 . A . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:236,233,0,0 0/0:.:469:469:0:0%:236,233,0,0 -Example1_ref 1410 . A . PASS DP=942;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:471:0:0%:237,234,0,0 0/0:.:471:471:0:0%:237,234,0,0 -Example1_ref 1411 . C . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:239,234,0,0 0/0:.:473:473:0:0%:239,234,0,0 -Example1_ref 1412 . A . PASS DP=936;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:238,230,0,0 0/0:.:468:468:0:0%:238,230,0,0 -Example1_ref 1413 . G . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:237,232,0,0 0/0:.:469:469:0:0%:237,232,0,0 -Example1_ref 1414 . A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:233,232,0,0 0/0:.:465:465:0:0%:233,232,0,0 -Example1_ref 1415 . A . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:241,231,0,0 0/0:.:472:472:0:0%:241,231,0,0 -Example1_ref 1416 . G A . PASS DP=948;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:473:1:0.21%:238,235,0,1 0/0:.:474:473:1:0.21%:238,235,0,1 -Example1_ref 1417 . C . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:234,229,0,0 0/0:.:463:463:0:0%:234,229,0,0 -Example1_ref 1418 . GA G . PASS DP=936;SS=0;SSC=0;GPV=1E0;SPV=6.879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:466:2:0.43%:233,233,2,0 0/0:.:468:466:2:0.43%:233,233,2,0 -Example1_ref 1419 . A . PASS DP=940;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:468:0:0%:236,232,0,0 0/0:.:470:468:0:0%:236,232,0,0 -Example1_ref 1420 . T . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:246,229,0,0 0/0:.:475:475:0:0%:246,229,0,0 -Example1_ref 1421 . G A . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:244,231,0,1 0/0:.:476:475:1:0.21%:244,231,0,1 -Example1_ref 1422 . A . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:244,231,0,0 0/0:.:475:475:0:0%:244,231,0,0 -Example1_ref 1423 . C . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:249,223,0,0 0/0:.:472:472:0:0%:249,223,0,0 -Example1_ref 1424 . C . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:244,225,0,0 0/0:.:469:469:0:0%:244,225,0,0 -Example1_ref 1425 . G . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:251,227,0,0 0/0:.:478:478:0:0%:251,227,0,0 -Example1_ref 1426 . G T . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:477:1:0.21%:250,227,1,0 0/0:.:478:477:1:0.21%:250,227,1,0 -Example1_ref 1427 . A . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:251,231,0,0 0/0:.:482:482:0:0%:251,231,0,0 -Example1_ref 1428 . C . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:247,225,0,0 0/0:.:472:472:0:0%:247,225,0,0 -Example1_ref 1429 . T . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:244,221,0,0 0/0:.:465:465:0:0%:244,221,0,0 -Example1_ref 1430 . G . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:252,226,0,0 0/0:.:478:478:0:0%:252,226,0,0 -Example1_ref 1431 . A . PASS DP=934;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:245,222,0,0 0/0:.:467:467:0:0%:245,222,0,0 -Example1_ref 1432 . G . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:466:0:0%:244,222,0,0 0/0:.:466:466:0:0%:244,222,0,0 -Example1_ref 1433 . C A . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:471:1:0.21%:246,225,1,0 0/0:.:472:471:1:0.21%:246,225,1,0 -Example1_ref 1434 . A T . PASS DP=942;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:469:1:0.21%:246,223,0,1 0/0:.:471:469:1:0.21%:246,223,0,1 -Example1_ref 1435 . A . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:249,223,0,0 0/0:.:472:472:0:0%:249,223,0,0 -Example1_ref 1436 . G . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:247,222,0,0 0/0:.:469:469:0:0%:247,222,0,0 -Example1_ref 1437 . C A . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:253,222,0,1 0/0:.:476:475:1:0.21%:253,222,0,1 -Example1_ref 1438 . T . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:253,226,0,0 0/0:.:479:479:0:0%:253,226,0,0 -Example1_ref 1439 . A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:245,220,0,0 0/0:.:465:465:0:0%:245,220,0,0 -Example1_ref 1440 . C . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:240,220,0,0 0/0:.:460:460:0:0%:240,220,0,0 -Example1_ref 1441 . A . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:237,217,0,0 0/0:.:454:454:0:0%:237,217,0,0 -Example1_ref 1442 . G . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:0:0%:238,219,0,0 0/0:.:458:457:0:0%:238,219,0,0 -Example1_ref 1443 . A . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:238,219,0,0 0/0:.:457:457:0:0%:238,219,0,0 -Example1_ref 1444 . A ACTGTCTC . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:1:0.22%:242,215,1,0 0/0:.:459:457:1:0.22%:242,215,1,0 -Example1_ref 1445 . T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:0:0%:230,207,0,0 0/0:.:438:437:0:0%:230,207,0,0 -Example1_ref 1446 . C A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:440:1:0.23%:235,205,0,1 0/0:.:442:440:1:0.23%:235,205,0,1 -Example1_ref 1447 . C A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:433:1:0.23%:234,199,0,1 0/0:.:436:433:1:0.23%:234,199,0,1 -Example1_ref 1448 . G . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:239,207,0,0 0/0:.:446:446:0:0%:239,207,0,0 -Example1_ref 1449 . A T . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:238,206,0,1 0/0:.:445:444:1:0.22%:238,206,0,1 -Example1_ref 1450 . CA C . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:238,196,0,1 0/0:.:435:434:1:0.23%:238,196,0,1 -Example1_ref 1451 . A . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:240,206,0,0 0/0:.:446:446:0:0%:240,206,0,0 -Example1_ref 1452 . A G . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:237,205,0,1 0/0:.:443:442:1:0.23%:237,205,0,1 -Example1_ref 1453 . T . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:258,202,0,0 0/0:.:460:460:0:0%:258,202,0,0 -Example1_ref 1454 . A . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:261,208,0,0 0/0:.:469:469:0:0%:261,208,0,0 -Example1_ref 1455 . T . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:246,197,0,0 0/0:.:443:443:0:0%:246,197,0,0 -Example1_ref 1456 . C T . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:258,199,0,1 0/0:.:458:457:1:0.22%:258,199,0,1 -Example1_ref 1457 . A . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:255,203,0,0 0/0:.:458:458:0:0%:255,203,0,0 -Example1_ref 1458 . A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:260,205,0,0 0/0:.:465:465:0:0%:260,205,0,0 -Example1_ref 1459 . G . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:254,201,0,0 0/0:.:455:455:0:0%:254,201,0,0 -Example1_ref 1460 . A . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:253,205,0,0 0/0:.:458:458:0:0%:253,205,0,0 -Example1_ref 1461 . C A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:249,199,1,0 0/0:.:449:448:1:0.22%:249,199,1,0 -Example1_ref 1462 . T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:246,189,0,0 0/0:.:435:435:0:0%:246,189,0,0 -Example1_ref 1463 . G . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:252,195,0,0 0/0:.:447:447:0:0%:252,195,0,0 -Example1_ref 1464 . A . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:247,198,0,0 0/0:.:445:445:0:0%:247,198,0,0 -Example1_ref 1465 . A G . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:453:1:0.22%:252,201,1,0 0/0:.:454:453:1:0.22%:252,201,1,0 -Example1_ref 1466 . C . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:0:0%:248,197,0,0 0/0:.:446:445:0:0%:248,197,0,0 -Example1_ref 1467 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:248,194,0,0 0/0:.:442:442:0:0%:248,194,0,0 -Example1_ref 1468 . A . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:250,194,0,0 0/0:.:444:444:0:0%:250,194,0,0 -Example1_ref 1469 . C . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:249,191,0,0 0/0:.:440:440:0:0%:249,191,0,0 -Example1_ref 1470 . A AACTGTCTCTTAT . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:246,195,1,0 0/0:.:442:441:1:0.23%:246,195,1,0 -Example1_ref 1471 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:0:0%:245,194,0,0 0/0:.:440:439:0:0%:245,194,0,0 -Example1_ref 1472 . A . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:242,193,0,0 0/0:.:435:435:0:0%:242,193,0,0 -Example1_ref 1473 . A . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:245,196,0,0 0/0:.:441:441:0:0%:245,196,0,0 -Example1_ref 1474 . C . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:246,195,0,0 0/0:.:441:441:0:0%:246,195,0,0 -Example1_ref 1475 . A . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:246,199,0,0 0/0:.:445:445:0:0%:246,199,0,0 -Example1_ref 1476 . T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:240,195,0,0 0/0:.:435:435:0:0%:240,195,0,0 -Example1_ref 1477 . C . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:241,196,0,0 0/0:.:437:437:0:0%:241,196,0,0 -Example1_ref 1478 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:237,196,0,0 0/0:.:433:433:0:0%:237,196,0,0 -Example1_ref 1479 . G . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:238,199,0,0 0/0:.:437:437:0:0%:238,199,0,0 -Example1_ref 1480 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:239,201,0,0 0/0:.:440:440:0:0%:239,201,0,0 -Example1_ref 1481 . G . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:231,205,0,0 0/0:.:436:436:0:0%:231,205,0,0 -Example1_ref 1482 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:240,203,0,0 0/0:.:443:443:0:0%:240,203,0,0 -Example1_ref 1483 . C . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:240,200,0,0 0/0:.:440:440:0:0%:240,200,0,0 -Example1_ref 1484 . AGACT A . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:438:1:0.23%:243,195,1,0 0/0:.:439:438:1:0.23%:243,195,1,0 -Example1_ref 1485 . GA G . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=6.8793E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:437:2:0.46%:244,193,0,2 0/0:.:439:437:2:0.46%:244,193,0,2 -Example1_ref 1486 . A . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:449:0:0%:253,196,0,0 0/0:.:451:449:0:0%:253,196,0,0 -Example1_ref 1487 . C . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:0:0%:238,196,0,0 0/0:.:435:434:0:0%:238,196,0,0 -Example1_ref 1488 . T . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:231,190,0,0 0/0:.:421:421:0:0%:231,190,0,0 -Example1_ref 1489 . A . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:237,195,0,0 0/0:.:432:432:0:0%:237,195,0,0 -Example1_ref 1490 . A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:235,194,0,0 0/0:.:429:429:0:0%:235,194,0,0 -Example1_ref 1491 . A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:238,198,0,0 0/0:.:436:436:0:0%:238,198,0,0 -Example1_ref 1492 . C . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:234,197,0,0 0/0:.:431:431:0:0%:234,197,0,0 -Example1_ref 1493 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:238,195,0,0 0/0:.:433:433:0:0%:238,195,0,0 -Example1_ref 1494 . A . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:233,182,0,0 0/0:.:415:415:0:0%:233,182,0,0 -Example1_ref 1495 . G . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:228,190,0,0 0/0:.:418:418:0:0%:228,190,0,0 -Example1_ref 1496 . A . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:234,180,0,0 0/0:.:414:414:0:0%:234,180,0,0 -Example1_ref 1497 . G A . PASS DP=812;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:405:1:0.25%:223,182,1,0 0/0:.:406:405:1:0.25%:223,182,1,0 -Example1_ref 1498 . A . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:241,181,0,0 0/0:.:422:422:0:0%:241,181,0,0 -Example1_ref 1499 . C . PASS DP=814;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:407:0:0%:235,172,0,0 0/0:.:407:407:0:0%:235,172,0,0 -Example1_ref 1500 . T A . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:397:1:0.25%:227,170,0,1 0/0:.:399:397:1:0.25%:227,170,0,1 -Example1_ref 1501 . C . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:230,172,0,0 0/0:.:402:402:0:0%:230,172,0,0 -Example1_ref 1502 . A . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:237,179,0,0 0/0:.:416:416:0:0%:237,179,0,0 -Example1_ref 1503 . A C . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:416:1:0.24%:236,180,1,0 0/0:.:417:416:1:0.24%:236,180,1,0 -Example1_ref 1504 . C . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:233,177,0,0 0/0:.:410:410:0:0%:233,177,0,0 -Example1_ref 1505 . G A . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:223,177,1,0 0/0:.:401:400:1:0.25%:223,177,1,0 -Example1_ref 1506 . A . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:230,178,0,0 0/0:.:408:408:0:0%:230,178,0,0 -Example1_ref 1507 . C . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:226,173,0,0 0/0:.:399:399:0:0%:226,173,0,0 -Example1_ref 1508 . A AAG . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:404:1:0.25%:225,179,1,0 0/0:.:405:404:1:0.25%:225,179,1,0 -Example1_ref 1509 . A G . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=6.8797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:400:2:0.5%:227,173,0,2 0/0:.:402:400:2:0.5%:227,173,0,2 -Example1_ref 1510 . G . PASS DP=790;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:395:395:0:0%:223,172,0,0 0/0:.:395:395:0:0%:223,172,0,0 -Example1_ref 1511 . A C . PASS DP=806;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:402:1:0.25%:225,177,0,1 0/0:.:403:402:1:0.25%:225,177,0,1 -Example1_ref 1512 . A G . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:409:1:0.24%:231,178,1,0 0/0:.:410:409:1:0.24%:231,178,1,0 -Example1_ref 1513 . G . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:216,180,0,0 0/0:.:396:396:0:0%:216,180,0,0 -Example1_ref 1514 . A . PASS DP=814;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:407:0:0%:228,179,0,0 0/0:.:407:407:0:0%:228,179,0,0 -Example1_ref 1515 . A . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:229,179,0,0 0/0:.:408:408:0:0%:229,179,0,0 -Example1_ref 1516 . A . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:233,181,0,0 0/0:.:414:414:0:0%:233,181,0,0 -Example1_ref 1517 . C . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:231,179,0,0 0/0:.:410:410:0:0%:231,179,0,0 -Example1_ref 1518 . A AC . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:407:1:0.25%:230,177,1,0 0/0:.:408:407:1:0.25%:230,177,1,0 -Example1_ref 1519 . A . PASS DP=808;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:233,171,0,0 0/0:.:404:404:0:0%:233,171,0,0 -Example1_ref 1520 . G . PASS DP=786;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:219,174,0,0 0/0:.:393:393:0:0%:219,174,0,0 -Example1_ref 1521 . G . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:211,172,0,0 0/0:.:383:383:0:0%:211,172,0,0 -Example1_ref 1522 . C . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:216,172,0,0 0/0:.:388:388:0:0%:216,172,0,0 -Example1_ref 1523 . A . PASS DP=796;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:398:0:0%:226,172,0,0 0/0:.:398:398:0:0%:226,172,0,0 -Example1_ref 1524 . G A . PASS DP=782;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:390:1:0.26%:220,170,1,0 0/0:.:391:390:1:0.26%:220,170,1,0 -Example1_ref 1525 . T . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:218,168,0,0 0/0:.:386:386:0:0%:218,168,0,0 -Example1_ref 1526 . C . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:217,169,0,0 0/0:.:387:386:0:0%:217,169,0,0 -Example1_ref 1527 . A . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:0:0%:220,178,0,0 0/0:.:399:398:0:0%:220,178,0,0 -Example1_ref 1528 . A . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:404:0:0%:225,179,0,0 0/0:.:405:404:0:0%:225,179,0,0 -Example1_ref 1529 . C . PASS DP=784;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:392:392:0:0%:218,174,0,0 0/0:.:392:392:0:0%:218,174,0,0 -Example1_ref 1530 . C . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:214,173,0,0 0/0:.:387:387:0:0%:214,173,0,0 -Example1_ref 1531 . A . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:220,176,0,0 0/0:.:396:396:0:0%:220,176,0,0 -Example1_ref 1532 . C A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=6.8799E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:385:2:0.52%:213,172,0,2 0/0:.:387:385:2:0.52%:213,172,0,2 -Example1_ref 1533 . C A . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:1:0.26%:206,172,1,0 0/0:.:379:378:1:0.26%:206,172,1,0 -Example1_ref 1534 . C A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:1:0.26%:211,171,0,1 0/0:.:383:382:1:0.26%:211,171,0,1 -Example1_ref 1535 . G A . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:381:1:0.26%:207,174,1,0 0/0:.:382:381:1:0.26%:207,174,1,0 -Example1_ref 1536 . C A . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:212,173,0,1 0/0:.:386:385:1:0.26%:212,173,0,1 -Example1_ref 1537 . C . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:210,176,0,0 0/0:.:386:386:0:0%:210,176,0,0 -Example1_ref 1538 . A . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:388:0:0%:213,175,0,0 0/0:.:389:388:0:0%:213,175,0,0 -Example1_ref 1539 . A . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:212,176,0,0 0/0:.:388:388:0:0%:212,176,0,0 -Example1_ref 1540 . T . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:201,170,0,0 0/0:.:371:371:0:0%:201,170,0,0 -Example1_ref 1541 . C . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:207,166,0,0 0/0:.:373:373:0:0%:207,166,0,0 -Example1_ref 1542 . C . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:210,171,0,0 0/0:.:381:381:0:0%:210,171,0,0 -Example1_ref 1543 . T A . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:208,169,1,0 0/0:.:378:377:1:0.26%:208,169,1,0 -Example1_ref 1544 . A . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:211,171,0,0 0/0:.:382:382:0:0%:211,171,0,0 -Example1_ref 1545 . C A . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:380:1:0.26%:210,170,0,1 0/0:.:381:380:1:0.26%:210,170,0,1 -Example1_ref 1546 . A . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:215,171,0,0 0/0:.:386:386:0:0%:215,171,0,0 -Example1_ref 1547 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:212,171,0,0 0/0:.:383:383:0:0%:212,171,0,0 -Example1_ref 1548 . A . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:209,175,0,0 0/0:.:384:384:0:0%:209,175,0,0 -Example1_ref 1549 . C CCTGTCTCTT . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:382:1:0.26%:208,174,1,0 0/0:.:384:382:1:0.26%:208,174,1,0 -Example1_ref 1550 . A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:211,163,0,0 0/0:.:374:374:0:0%:211,163,0,0 -Example1_ref 1551 . G C . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:210,160,1,0 0/0:.:371:370:1:0.27%:210,160,1,0 -Example1_ref 1552 . A . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:206,162,0,0 0/0:.:368:368:0:0%:206,162,0,0 -Example1_ref 1553 . A . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:212,164,0,0 0/0:.:376:376:0:0%:212,164,0,0 -Example1_ref 1554 . C . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:207,165,0,0 0/0:.:372:372:0:0%:207,165,0,0 -Example1_ref 1555 . A . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:210,158,0,0 0/0:.:368:368:0:0%:210,158,0,0 -Example1_ref 1556 . A . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:213,160,0,0 0/0:.:373:373:0:0%:213,160,0,0 -Example1_ref 1557 . A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:211,163,0,0 0/0:.:374:374:0:0%:211,163,0,0 -Example1_ref 1558 . C T . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:203,157,1,0 0/0:.:361:360:1:0.28%:203,157,1,0 -Example1_ref 1559 . C CCTGTCTCTTAT . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:195,166,1,0 0/0:.:362:361:1:0.28%:195,166,1,0 -Example1_ref 1560 . A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:202,168,0,0 0/0:.:370:370:0:0%:202,168,0,0 -Example1_ref 1561 . G . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:192,163,0,0 0/0:.:355:355:0:0%:192,163,0,0 -Example1_ref 1562 . G . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:194,167,0,0 0/0:.:361:361:0:0%:194,167,0,0 -Example1_ref 1563 . A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:202,169,0,0 0/0:.:371:371:0:0%:202,169,0,0 -Example1_ref 1564 . CG C . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:194,157,0,1 0/0:.:353:351:1:0.28%:194,157,0,1 -Example1_ref 1565 . G A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:356:1:0.28%:191,165,1,0 0/0:.:358:356:1:0.28%:191,165,1,0 -Example1_ref 1566 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:359:0:0%:188,171,0,0 0/0:.:361:359:0:0%:188,171,0,0 -Example1_ref 1567 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:190,168,0,0 0/0:.:358:358:0:0%:190,168,0,0 -Example1_ref 1568 . A . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:197,175,0,0 0/0:.:372:372:0:0%:197,175,0,0 -Example1_ref 1569 . T A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:194,167,0,1 0/0:.:362:361:1:0.28%:194,167,0,1 -Example1_ref 1570 . A G . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:367:1:0.27%:197,170,0,1 0/0:.:368:367:1:0.27%:197,170,0,1 -Example1_ref 1571 . G . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:188,172,0,0 0/0:.:360:360:0:0%:188,172,0,0 -Example1_ref 1572 . A . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:191,174,0,0 0/0:.:365:365:0:0%:191,174,0,0 -Example1_ref 1573 . T A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:188,173,1,0 0/0:.:362:361:1:0.28%:188,173,1,0 -Example1_ref 1574 . GAT G . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:187,170,1,0 0/0:.:358:357:1:0.28%:187,170,1,0 -Example1_ref 1575 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:351:0:0%:188,163,0,0 0/0:.:354:351:0:0%:188,163,0,0 -Example1_ref 1576 . T . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:0:0%:172,159,0,0 0/0:.:332:331:0:0%:172,159,0,0 -Example1_ref 1577 . C . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:182,164,0,0 0/0:.:346:346:0:0%:182,164,0,0 -Example1_ref 1578 . T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:179,163,0,0 0/0:.:342:342:0:0%:179,163,0,0 -Example1_ref 1579 . G . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:191,161,0,0 0/0:.:352:352:0:0%:191,161,0,0 -Example1_ref 1580 . T . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:192,159,0,0 0/0:.:351:351:0:0%:192,159,0,0 -Example1_ref 1581 . T A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:1:0.29%:186,160,1,0 0/0:.:347:346:1:0.29%:186,160,1,0 -Example1_ref 1582 . C T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:346:1:0.29%:188,158,1,0 0/0:.:348:346:1:0.29%:188,158,1,0 -Example1_ref 1583 . A . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:188,163,0,0 0/0:.:351:351:0:0%:188,163,0,0 -Example1_ref 1584 . A T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:193,162,1,0 0/0:.:356:355:1:0.28%:193,162,1,0 -Example1_ref 1585 . T TGC . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:192,163,0,1 0/0:.:356:355:1:0.28%:192,163,0,1 -Example1_ref 1586 . G A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:190,165,1,0 0/0:.:356:355:1:0.28%:190,165,1,0 -Example1_ref 1587 . C A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=6.8804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:349:2:0.57%:187,162,1,1 0/0:.:353:349:2:0.57%:187,162,1,1 -Example1_ref 1588 . A AT . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:344:1:0.29%:194,150,1,0 0/0:.:346:344:1:0.29%:194,150,1,0 -Example1_ref 1589 . T A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:184,139,0,1 0/0:.:325:323:1:0.31%:184,139,0,1 -Example1_ref 1590 . T . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:180,146,0,0 0/0:.:326:326:0:0%:180,146,0,0 -Example1_ref 1591 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:189,149,0,0 0/0:.:338:338:0:0%:189,149,0,0 -Example1_ref 1592 . G . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:188,146,0,0 0/0:.:334:334:0:0%:188,146,0,0 -Example1_ref 1593 . G T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:178,145,1,0 0/0:.:324:323:1:0.31%:178,145,1,0 -Example1_ref 1594 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:189,149,0,0 0/0:.:338:338:0:0%:189,149,0,0 -Example1_ref 1595 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:189,152,0,0 0/0:.:341:341:0:0%:189,152,0,0 -Example1_ref 1596 . G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:182,146,0,0 0/0:.:328:328:0:0%:182,146,0,0 -Example1_ref 1597 . C . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:0:0%:187,144,0,0 0/0:.:332:331:0:0%:187,144,0,0 -Example1_ref 1598 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:189,148,0,0 0/0:.:337:337:0:0%:189,148,0,0 -Example1_ref 1599 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:191,149,0,0 0/0:.:340:340:0:0%:191,149,0,0 -Example1_ref 1600 . T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:184,147,0,0 0/0:.:331:331:0:0%:184,147,0,0 -Example1_ref 1601 . T C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:179,148,1,0 0/0:.:328:327:1:0.3%:179,148,1,0 -Example1_ref 1602 . A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:186,149,0,0 0/0:.:335:335:0:0%:186,149,0,0 -Example1_ref 1603 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:183,155,0,0 0/0:.:338:338:0:0%:183,155,0,0 -Example1_ref 1604 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:185,151,0,0 0/0:.:336:336:0:0%:185,151,0,0 -Example1_ref 1605 . C . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:179,151,0,0 0/0:.:330:330:0:0%:179,151,0,0 -Example1_ref 1606 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:177,144,0,0 0/0:.:321:321:0:0%:177,144,0,0 -Example1_ref 1607 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:183,148,0,0 0/0:.:331:331:0:0%:183,148,0,0 -Example1_ref 1608 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:179,147,0,0 0/0:.:326:326:0:0%:179,147,0,0 -Example1_ref 1609 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:177,143,0,0 0/0:.:320:320:0:0%:177,143,0,0 -Example1_ref 1610 . C . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:178,141,0,0 0/0:.:319:319:0:0%:178,141,0,0 -Example1_ref 1611 . A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:180,142,0,0 0/0:.:322:322:0:0%:180,142,0,0 -Example1_ref 1612 . A G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:180,144,0,1 0/0:.:325:324:1:0.31%:180,144,0,1 -Example1_ref 1613 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:182,142,0,0 0/0:.:324:324:0:0%:182,142,0,0 -Example1_ref 1614 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:179,151,0,0 0/0:.:330:330:0:0%:179,151,0,0 -Example1_ref 1615 . T TCTGTC . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:321:2:0.62%:172,149,2,0 0/0:.:324:321:2:0.62%:172,149,2,0 -Example1_ref 1616 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:169,145,0,0 0/0:.:314:314:0:0%:169,145,0,0 -Example1_ref 1617 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:170,153,0,0 0/0:.:323:323:0:0%:170,153,0,0 -Example1_ref 1618 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:170,152,0,0 0/0:.:322:322:0:0%:170,152,0,0 -Example1_ref 1619 . G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:159,153,0,0 0/0:.:312:312:0:0%:159,153,0,0 -Example1_ref 1620 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:160,154,0,0 0/0:.:314:314:0:0%:160,154,0,0 -Example1_ref 1621 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:162,147,0,0 0/0:.:309:309:0:0%:162,147,0,0 -Example1_ref 1622 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:160,150,0,0 0/0:.:310:310:0:0%:160,150,0,0 -Example1_ref 1623 . C A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=6.57E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:310:3:0.96%:162,148,0,3 0/0:.:313:310:3:0.96%:162,148,0,3 -Example1_ref 1624 . A G . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:160,150,0,1 0/0:.:311:310:1:0.32%:160,150,0,1 -Example1_ref 1625 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:159,151,0,0 0/0:.:310:310:0:0%:159,151,0,0 -Example1_ref 1626 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:159,151,0,0 0/0:.:310:310:0:0%:159,151,0,0 -Example1_ref 1627 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:151,147,0,0 0/0:.:298:298:0:0%:151,147,0,0 -Example1_ref 1628 . C A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=6.5703E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:300:3:0.99%:154,146,1,2 0/0:.:304:300:3:0.99%:154,146,1,2 -Example1_ref 1629 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:157,154,0,0 0/0:.:311:311:0:0%:157,154,0,0 -Example1_ref 1630 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:308:308:0:0%:153,155,0,0 -Example1_ref 1631 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:154,153,0,0 0/0:.:307:307:0:0%:154,153,0,0 -Example1_ref 1632 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:152,160,0,0 0/0:.:312:312:0:0%:152,160,0,0 -Example1_ref 1633 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:153,160,0,0 0/0:.:313:313:0:0%:153,160,0,0 -Example1_ref 1634 . C A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:152,155,0,1 0/0:.:308:307:1:0.32%:152,155,0,1 -Example1_ref 1635 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:154,156,0,0 0/0:.:310:310:0:0%:154,156,0,0 -Example1_ref 1636 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:152,157,0,0 0/0:.:309:309:0:0%:152,157,0,0 -Example1_ref 1637 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:152,155,0,0 0/0:.:307:307:0:0%:152,155,0,0 -Example1_ref 1638 . T A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:305:1:0.33%:148,157,0,1 0/0:.:307:305:1:0.33%:148,157,0,1 -Example1_ref 1639 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:148,163,0,0 0/0:.:311:311:0:0%:148,163,0,0 -Example1_ref 1640 . A T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:149,163,0,1 0/0:.:313:312:1:0.32%:149,163,0,1 -Example1_ref 1641 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:143,165,0,0 0/0:.:308:308:0:0%:143,165,0,0 -Example1_ref 1642 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:0:0%:142,166,0,0 0/0:.:309:308:0:0%:142,166,0,0 -Example1_ref 1643 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:128,165,0,0 0/0:.:293:293:0:0%:128,165,0,0 -Example1_ref 1644 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:123,163,0,0 0/0:.:286:286:0:0%:123,163,0,0 -Example1_ref 1645 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:124,166,0,0 0/0:.:290:290:0:0%:124,166,0,0 -Example1_ref 1646 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:127,170,0,0 0/0:.:297:297:0:0%:127,170,0,0 -Example1_ref 1647 . C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:129,168,0,0 0/0:.:297:297:0:0%:129,168,0,0 -Example1_ref 1648 . T . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:128,164,0,0 0/0:.:292:292:0:0%:128,164,0,0 -Example1_ref 1649 . T G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:125,160,0,1 0/0:.:286:285:1:0.35%:125,160,0,1 -Example1_ref 1650 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:128,167,0,0 0/0:.:295:295:0:0%:128,167,0,0 -Example1_ref 1651 . G . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:126,163,0,0 0/0:.:289:289:0:0%:126,163,0,0 -Example1_ref 1652 . G C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:124,167,1,0 0/0:.:292:291:1:0.34%:124,167,1,0 -Example1_ref 1653 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:124,169,0,0 0/0:.:293:293:0:0%:124,169,0,0 -Example1_ref 1654 . T . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:129,163,0,0 0/0:.:292:292:0:0%:129,163,0,0 -Example1_ref 1655 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:128,165,0,0 0/0:.:293:293:0:0%:128,165,0,0 -Example1_ref 1656 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:129,166,0,0 0/0:.:295:295:0:0%:129,166,0,0 -Example1_ref 1657 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:128,168,0,0 0/0:.:296:296:0:0%:128,168,0,0 -Example1_ref 1658 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:125,167,0,0 0/0:.:292:292:0:0%:125,167,0,0 -Example1_ref 1659 . G A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:118,168,0,1 0/0:.:287:286:1:0.35%:118,168,0,1 -Example1_ref 1660 . A C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:122,161,0,1 0/0:.:284:283:1:0.35%:122,161,0,1 -Example1_ref 1661 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:126,159,0,0 0/0:.:285:285:0:0%:126,159,0,0 -Example1_ref 1662 . T TACCA . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:125,152,1,0 0/0:.:278:277:1:0.36%:125,152,1,0 -Example1_ref 1663 . C A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=6.5708E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:282:3:1.05%:125,157,1,2 0/0:.:285:282:3:1.05%:125,157,1,2 -Example1_ref 1664 . C CATGATTTGA . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:121,163,1,0 0/0:.:285:284:1:0.35%:121,163,1,0 -Example1_ref 1665 . T . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:124,161,0,0 0/0:.:285:285:0:0%:124,161,0,0 -Example1_ref 1666 . ATC A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:121,163,1,0 0/0:.:285:284:1:0.35%:121,163,1,0 -Example1_ref 1667 . T . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:119,157,0,0 0/0:.:276:276:0:0%:119,157,0,0 -Example1_ref 1668 . C T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:119,158,1,0 0/0:.:278:277:1:0.36%:119,158,1,0 -Example1_ref 1669 . TCA T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:117,159,0,1 0/0:.:277:276:1:0.36%:117,159,0,1 -Example1_ref 1670 . C . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:116,149,0,0 0/0:.:265:265:0:0%:116,149,0,0 -Example1_ref 1671 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:120,160,0,0 0/0:.:280:280:0:0%:120,160,0,0 -Example1_ref 1672 . C . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:124,152,0,0 0/0:.:276:276:0:0%:124,152,0,0 -Example1_ref 1673 . C . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:122,157,0,0 0/0:.:279:279:0:0%:122,157,0,0 -Example1_ref 1674 . G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:119,162,0,0 0/0:.:281:281:0:0%:119,162,0,0 -Example1_ref 1675 . G . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:112,159,0,0 0/0:.:271:271:0:0%:112,159,0,0 -Example1_ref 1676 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:115,162,0,0 0/0:.:277:277:0:0%:115,162,0,0 -Example1_ref 1677 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:115,163,0,0 0/0:.:278:278:0:0%:115,163,0,0 -Example1_ref 1678 . T . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:114,162,0,0 0/0:.:276:276:0:0%:114,162,0,0 -Example1_ref 1679 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:113,162,0,0 0/0:.:275:275:0:0%:113,162,0,0 -Example1_ref 1680 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:116,159,0,0 0/0:.:275:275:0:0%:116,159,0,0 -Example1_ref 1681 . A C . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:113,157,0,1 0/0:.:271:270:1:0.37%:113,157,0,1 -Example1_ref 1682 . G C . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:111,155,1,0 0/0:.:267:266:1:0.37%:111,155,1,0 -Example1_ref 1683 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:109,151,0,0 0/0:.:260:260:0:0%:109,151,0,0 -Example1_ref 1684 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:109,153,0,0 0/0:.:262:262:0:0%:109,153,0,0 -Example1_ref 1685 . T A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:113,140,1,0 0/0:.:255:253:1:0.39%:113,140,1,0 -Example1_ref 1686 . G A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:243:1:0.41%:107,136,1,0 0/0:.:245:243:1:0.41%:107,136,1,0 -Example1_ref 1687 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:104,143,0,0 0/0:.:247:247:0:0%:104,143,0,0 -Example1_ref 1688 . T C . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:108,147,1,0 0/0:.:256:255:1:0.39%:108,147,1,0 -Example1_ref 1689 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:110,149,0,0 0/0:.:259:259:0:0%:110,149,0,0 -Example1_ref 1690 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:109,146,0,0 0/0:.:255:255:0:0%:109,146,0,0 -Example1_ref 1691 . A T . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:111,144,0,1 0/0:.:256:255:1:0.39%:111,144,0,1 -Example1_ref 1692 . T C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:110,141,1,0 0/0:.:252:251:1:0.4%:110,141,1,0 -Example1_ref 1693 . T C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:110,142,1,0 0/0:.:253:252:1:0.4%:110,142,1,0 -Example1_ref 1694 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:112,147,0,0 0/0:.:259:259:0:0%:112,147,0,0 -Example1_ref 1695 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:110,148,0,0 0/0:.:258:258:0:0%:110,148,0,0 -Example1_ref 1696 . G . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:107,146,0,0 0/0:.:253:253:0:0%:107,146,0,0 -Example1_ref 1697 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:113,147,0,0 0/0:.:260:260:0:0%:113,147,0,0 -Example1_ref 1698 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:112,150,0,0 0/0:.:262:262:0:0%:112,150,0,0 -Example1_ref 1699 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:110,139,0,0 0/0:.:249:249:0:0%:110,139,0,0 -Example1_ref 1700 . C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:109,146,0,0 0/0:.:255:255:0:0%:109,146,0,0 -Example1_ref 1701 . T A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:109,143,0,1 0/0:.:253:252:1:0.4%:109,143,0,1 -Example1_ref 1702 . G A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:106,148,1,0 0/0:.:255:254:1:0.39%:106,148,1,0 -Example1_ref 1703 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:107,141,0,0 0/0:.:248:248:0:0%:107,141,0,0 -Example1_ref 1704 . C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:105,147,0,0 0/0:.:252:252:0:0%:105,147,0,0 -Example1_ref 1705 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:107,148,0,0 0/0:.:255:255:0:0%:107,148,0,0 -Example1_ref 1706 . G . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:108,148,0,0 0/0:.:256:256:0:0%:108,148,0,0 -Example1_ref 1707 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:107,146,0,0 0/0:.:253:253:0:0%:107,146,0,0 -Example1_ref 1708 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:109,151,0,0 0/0:.:260:260:0:0%:109,151,0,0 -Example1_ref 1709 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:108,148,0,0 0/0:.:256:256:0:0%:108,148,0,0 -Example1_ref 1710 . C A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:106,145,1,0 0/0:.:252:251:1:0.4%:106,145,1,0 -Example1_ref 1711 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:109,146,0,0 0/0:.:255:255:0:0%:109,146,0,0 -Example1_ref 1712 . C . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:112,149,0,0 0/0:.:261:261:0:0%:112,149,0,0 -Example1_ref 1713 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:117,152,0,0 0/0:.:269:269:0:0%:117,152,0,0 -Example1_ref 1714 . A ATCTGTC . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:118,152,1,0 0/0:.:271:270:1:0.37%:118,152,1,0 -Example1_ref 1715 . T . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:118,152,0,0 0/0:.:270:270:0:0%:118,152,0,0 -Example1_ref 1716 . C . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:119,146,0,0 0/0:.:265:265:0:0%:119,146,0,0 -Example1_ref 1717 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:119,149,0,0 0/0:.:268:268:0:0%:119,149,0,0 -Example1_ref 1718 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:124,147,0,0 0/0:.:271:271:0:0%:124,147,0,0 -Example1_ref 1719 . TAG T . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:264:1:0.38%:120,144,0,1 0/0:.:265:264:1:0.38%:120,144,0,1 -Example1_ref 1720 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:119,147,0,0 0/0:.:266:266:0:0%:119,147,0,0 -Example1_ref 1721 . G . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:0:0%:119,143,0,0 0/0:.:263:262:0:0%:119,143,0,0 -Example1_ref 1722 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:119,139,0,0 0/0:.:258:258:0:0%:119,139,0,0 -Example1_ref 1723 . G . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:119,139,0,0 0/0:.:258:258:0:0%:119,139,0,0 -Example1_ref 1724 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:123,138,0,0 0/0:.:261:261:0:0%:123,138,0,0 -Example1_ref 1725 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:121,141,0,0 0/0:.:262:262:0:0%:121,141,0,0 -Example1_ref 1726 . T C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:122,139,1,0 0/0:.:262:261:1:0.38%:122,139,1,0 -Example1_ref 1727 . T C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:118,139,1,0 0/0:.:258:257:1:0.39%:118,139,1,0 -Example1_ref 1728 . G . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:119,138,0,0 0/0:.:257:257:0:0%:119,138,0,0 -Example1_ref 1729 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:123,139,0,0 0/0:.:262:262:0:0%:123,139,0,0 -Example1_ref 1730 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:121,140,0,0 0/0:.:261:261:0:0%:121,140,0,0 -Example1_ref 1731 . G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:118,141,0,0 0/0:.:259:259:0:0%:118,141,0,0 -Example1_ref 1732 . G . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:114,140,0,0 0/0:.:254:254:0:0%:114,140,0,0 -Example1_ref 1733 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:118,139,0,0 0/0:.:257:257:0:0%:118,139,0,0 -Example1_ref 1734 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:117,140,0,0 0/0:.:257:257:0:0%:117,140,0,0 -Example1_ref 1735 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:118,140,0,0 0/0:.:258:258:0:0%:118,140,0,0 -Example1_ref 1736 . G GAGAC . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:250:1:0.4%:110,140,0,1 0/0:.:252:250:1:0.4%:110,140,0,1 -Example1_ref 1737 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:247:247:0:0%:112,135,0,0 -Example1_ref 1738 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:247:247:0:0%:112,135,0,0 -Example1_ref 1739 . A G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:114,135,1,0 0/0:.:250:249:1:0.4%:114,135,1,0 -Example1_ref 1740 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:112,134,0,0 0/0:.:246:246:0:0%:112,134,0,0 -Example1_ref 1741 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:247:247:0:0%:112,135,0,0 -Example1_ref 1742 . C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:110,132,0,0 0/0:.:242:242:0:0%:110,132,0,0 -Example1_ref 1743 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:113,135,0,0 0/0:.:248:248:0:0%:113,135,0,0 -Example1_ref 1744 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:113,136,0,0 0/0:.:249:249:0:0%:113,136,0,0 -Example1_ref 1745 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:109,133,0,0 0/0:.:242:242:0:0%:109,133,0,0 -Example1_ref 1746 . G T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:106,131,1,0 0/0:.:238:237:1:0.42%:106,131,1,0 -Example1_ref 1747 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:105,133,0,0 0/0:.:238:238:0:0%:105,133,0,0 -Example1_ref 1748 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:110,128,0,0 0/0:.:238:238:0:0%:110,128,0,0 -Example1_ref 1749 . C . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:112,124,0,0 0/0:.:236:236:0:0%:112,124,0,0 -Example1_ref 1750 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:108,125,0,0 0/0:.:233:233:0:0%:108,125,0,0 -Example1_ref 1751 . A T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:112,125,1,0 0/0:.:238:237:1:0.42%:112,125,1,0 -Example1_ref 1752 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:109,122,0,0 0/0:.:231:231:0:0%:109,122,0,0 -Example1_ref 1753 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:110,124,0,0 0/0:.:234:234:0:0%:110,124,0,0 -Example1_ref 1754 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:109,127,0,0 0/0:.:236:236:0:0%:109,127,0,0 -Example1_ref 1755 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:108,120,0,0 0/0:.:228:228:0:0%:108,120,0,0 -Example1_ref 1756 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:106,118,0,0 0/0:.:224:224:0:0%:106,118,0,0 -Example1_ref 1757 . T C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:105,120,1,0 0/0:.:226:225:1:0.44%:105,120,1,0 -Example1_ref 1758 . C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:103,115,0,0 0/0:.:218:218:0:0%:103,115,0,0 -Example1_ref 1759 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:101,114,0,0 0/0:.:215:215:0:0%:101,114,0,0 -Example1_ref 1760 . T C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:101,115,1,0 0/0:.:217:216:1:0.46%:101,115,1,0 -Example1_ref 1761 . G T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:99,116,1,0 0/0:.:216:215:1:0.46%:99,116,1,0 -Example1_ref 1762 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:94,114,0,0 0/0:.:208:208:0:0%:94,114,0,0 -Example1_ref 1763 . A T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:95,115,1,0 0/0:.:211:210:1:0.47%:95,115,1,0 -Example1_ref 1764 . T C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:96,112,1,0 0/0:.:209:208:1:0.48%:96,112,1,0 -Example1_ref 1765 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:95,111,0,0 0/0:.:206:206:0:0%:95,111,0,0 -Example1_ref 1766 . C A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:98,107,0,1 0/0:.:206:205:1:0.49%:98,107,0,1 -Example1_ref 1767 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:101,111,0,0 0/0:.:212:212:0:0%:101,111,0,0 -Example1_ref 1768 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:98,110,0,0 0/0:.:208:208:0:0%:98,110,0,0 -Example1_ref 1769 . G T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:79,109,1,0 0/0:.:189:188:1:0.53%:79,109,1,0 -Example1_ref 1770 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:86,110,0,0 0/0:.:196:196:0:0%:86,110,0,0 -Example1_ref 1771 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:0:0%:84,112,0,0 0/0:.:197:196:0:0%:84,112,0,0 -Example1_ref 1772 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:88,111,0,0 0/0:.:199:199:0:0%:88,111,0,0 -Example1_ref 1773 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:0:0%:84,109,0,0 0/0:.:194:193:0:0%:84,109,0,0 -Example1_ref 1774 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:86,109,0,0 0/0:.:195:195:0:0%:86,109,0,0 -Example1_ref 1775 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:84,104,0,0 0/0:.:188:188:0:0%:84,104,0,0 -Example1_ref 1776 . G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:82,104,0,0 0/0:.:186:186:0:0%:82,104,0,0 -Example1_ref 1777 . G T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:82,103,1,0 0/0:.:186:185:1:0.54%:82,103,1,0 -Example1_ref 1778 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:80,104,0,0 0/0:.:184:184:0:0%:80,104,0,0 -Example1_ref 1779 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:85,103,0,0 0/0:.:188:188:0:0%:85,103,0,0 -Example1_ref 1780 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:187:187:0:0%:84,103,0,0 -Example1_ref 1781 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:187:187:0:0%:84,103,0,0 -Example1_ref 1782 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:82,104,0,0 0/0:.:186:186:0:0%:82,104,0,0 -Example1_ref 1783 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:84,102,0,0 0/0:.:186:186:0:0%:84,102,0,0 -Example1_ref 1784 . G T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:1:0.55%:79,101,1,0 0/0:.:181:180:1:0.55%:79,101,1,0 -Example1_ref 1785 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:84,98,0,0 0/0:.:182:182:0:0%:84,98,0,0 -Example1_ref 1786 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:85,97,0,0 0/0:.:182:182:0:0%:85,97,0,0 -Example1_ref 1787 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:84,98,0,0 0/0:.:182:182:0:0%:84,98,0,0 -Example1_ref 1788 . TA T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:84,98,1,0 0/0:.:183:182:1:0.55%:84,98,1,0 -Example1_ref 1789 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:84,102,0,0 0/0:.:186:186:0:0%:84,102,0,0 -Example1_ref 1790 . A G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:179:1:0.56%:81,98,0,1 0/0:.:181:179:1:0.56%:81,98,0,1 -Example1_ref 1791 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:79,100,0,0 0/0:.:179:179:0:0%:79,100,0,0 -Example1_ref 1792 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:81,98,0,0 0/0:.:179:179:0:0%:81,98,0,0 -Example1_ref 1793 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:82,96,0,0 0/0:.:178:178:0:0%:82,96,0,0 -Example1_ref 1794 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:82,93,0,0 0/0:.:175:175:0:0%:82,93,0,0 -Example1_ref 1795 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:180:180:0:0%:85,95,0,0 -Example1_ref 1796 . C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:180:180:0:0%:85,95,0,0 -Example1_ref 1797 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:85,94,0,0 0/0:.:179:179:0:0%:85,94,0,0 -Example1_ref 1798 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:87,95,0,0 0/0:.:182:182:0:0%:87,95,0,0 -Example1_ref 1799 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:86,96,0,0 0/0:.:182:182:0:0%:86,96,0,0 -Example1_ref 1800 . T C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:88,98,0,1 0/0:.:187:186:1:0.53%:88,98,0,1 -Example1_ref 1801 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:85,100,0,0 0/0:.:185:185:0:0%:85,100,0,0 -Example1_ref 1802 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:85,97,0,0 0/0:.:182:182:0:0%:85,97,0,0 -Example1_ref 1803 . C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:86,100,0,0 0/0:.:186:186:0:0%:86,100,0,0 -Example1_ref 1804 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:87,95,0,0 0/0:.:182:182:0:0%:87,95,0,0 -Example1_ref 1805 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:84,95,0,0 0/0:.:179:179:0:0%:84,95,0,0 -Example1_ref 1806 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:85,93,0,0 0/0:.:178:178:0:0%:85,93,0,0 -Example1_ref 1807 . T C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:86,90,1,0 0/0:.:177:176:1:0.56%:86,90,1,0 -Example1_ref 1808 . C CG . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:86,89,1,0 0/0:.:176:175:1:0.57%:86,89,1,0 -Example1_ref 1809 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:82,92,0,0 0/0:.:174:174:0:0%:82,92,0,0 -Example1_ref 1810 . G T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:86,95,1,0 0/0:.:182:181:1:0.55%:86,95,1,0 -Example1_ref 1811 . C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:86,94,0,0 0/0:.:180:180:0:0%:86,94,0,0 -Example1_ref 1812 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:87,91,0,0 0/0:.:178:178:0:0%:87,91,0,0 -Example1_ref 1813 . C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:87,93,0,0 0/0:.:180:180:0:0%:87,93,0,0 -Example1_ref 1814 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:84,95,0,0 0/0:.:179:179:0:0%:84,95,0,0 -Example1_ref 1815 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:89,94,0,0 0/0:.:183:183:0:0%:89,94,0,0 -Example1_ref 1816 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:88,97,0,0 0/0:.:185:185:0:0%:88,97,0,0 -Example1_ref 1817 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:93,102,0,0 0/0:.:195:195:0:0%:93,102,0,0 -Example1_ref 1818 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:94,102,0,0 0/0:.:196:196:0:0%:94,102,0,0 -Example1_ref 1819 . A AG . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:93,96,0,1 0/0:.:190:189:1:0.53%:93,96,0,1 -Example1_ref 1820 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:94,92,0,0 0/0:.:186:186:0:0%:94,92,0,0 -Example1_ref 1821 . C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:92,92,0,0 0/0:.:184:184:0:0%:92,92,0,0 -Example1_ref 1822 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:95,93,0,0 0/0:.:188:188:0:0%:95,93,0,0 -Example1_ref 1823 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:96,89,0,0 0/0:.:185:185:0:0%:96,89,0,0 -Example1_ref 1824 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:97,90,0,0 0/0:.:187:187:0:0%:97,90,0,0 -Example1_ref 1825 . G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:97,93,0,0 0/0:.:190:190:0:0%:97,93,0,0 -Example1_ref 1826 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:96,93,0,0 0/0:.:189:189:0:0%:96,93,0,0 -Example1_ref 1827 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:96,92,0,0 0/0:.:188:188:0:0%:96,92,0,0 -Example1_ref 1828 . T TCTGTCTC . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:102,93,1,0 0/0:.:196:195:1:0.51%:102,93,1,0 -Example1_ref 1829 . T C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:102,89,0,1 0/0:.:192:191:1:0.52%:102,89,0,1 -Example1_ref 1830 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:101,87,0,0 0/0:.:188:188:0:0%:101,87,0,0 -Example1_ref 1831 . AT A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:105,87,1,0 0/0:.:193:192:1:0.52%:105,87,1,0 -Example1_ref 1832 . T C . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:187:1:0.53%:103,84,1,0 0/0:.:189:187:1:0.53%:103,84,1,0 -Example1_ref 1833 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:110,89,0,0 0/0:.:199:199:0:0%:110,89,0,0 -Example1_ref 1834 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:108,87,0,0 0/0:.:195:195:0:0%:108,87,0,0 -Example1_ref 1835 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:106,80,0,0 0/0:.:186:186:0:0%:106,80,0,0 -Example1_ref 1836 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:106,84,0,0 0/0:.:190:190:0:0%:106,84,0,0 -Example1_ref 1837 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:107,81,0,0 0/0:.:188:188:0:0%:107,81,0,0 -Example1_ref 1838 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:107,80,0,0 0/0:.:187:187:0:0%:107,80,0,0 -Example1_ref 1839 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:105,77,0,0 0/0:.:182:182:0:0%:105,77,0,0 -Example1_ref 1840 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:106,80,0,0 0/0:.:186:186:0:0%:106,80,0,0 -Example1_ref 1841 . C T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:103,81,1,0 0/0:.:185:184:1:0.54%:103,81,1,0 -Example1_ref 1842 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:103,79,0,0 0/0:.:182:182:0:0%:103,79,0,0 -Example1_ref 1843 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:100,80,0,0 0/0:.:180:180:0:0%:100,80,0,0 -Example1_ref 1844 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:102,81,0,0 0/0:.:183:183:0:0%:102,81,0,0 -Example1_ref 1845 . C A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:101,76,0,1 0/0:.:178:177:1:0.56%:101,76,0,1 -Example1_ref 1846 . C T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:100,76,1,0 0/0:.:177:176:1:0.56%:100,76,1,0 -Example1_ref 1847 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:99,75,0,0 0/0:.:174:174:0:0%:99,75,0,0 -Example1_ref 1848 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:99,76,0,0 0/0:.:176:175:0:0%:99,76,0,0 -Example1_ref 1849 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:98,78,0,0 0/0:.:176:176:0:0%:98,78,0,0 -Example1_ref 1850 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:102,81,0,0 0/0:.:183:183:0:0%:102,81,0,0 -Example1_ref 1851 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:99,81,0,0 0/0:.:181:180:0:0%:99,81,0,0 -Example1_ref 1852 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:99,80,0,0 0/0:.:179:179:0:0%:99,80,0,0 -Example1_ref 1853 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:177:177:0:0%:99,78,0,0 -Example1_ref 1854 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:171:171:0:0%:98,73,0,0 -Example1_ref 1855 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:99,73,0,0 0/0:.:172:172:0:0%:99,73,0,0 -Example1_ref 1856 . A C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:99,74,0,1 0/0:.:174:173:1:0.57%:99,74,0,1 -Example1_ref 1857 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:171:171:0:0%:98,73,0,0 -Example1_ref 1858 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:100,74,0,0 0/0:.:174:174:0:0%:100,74,0,0 -Example1_ref 1859 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:103,74,0,0 0/0:.:177:177:0:0%:103,74,0,0 -Example1_ref 1860 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:102,75,0,0 0/0:.:177:177:0:0%:102,75,0,0 -Example1_ref 1861 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:99,74,0,0 0/0:.:173:173:0:0%:99,74,0,0 -Example1_ref 1862 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:99,75,0,0 0/0:.:174:174:0:0%:99,75,0,0 -Example1_ref 1863 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:96,74,0,0 0/0:.:170:170:0:0%:96,74,0,0 -Example1_ref 1864 . G T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:93,72,1,0 0/0:.:166:165:1:0.6%:93,72,1,0 -Example1_ref 1865 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:88,73,0,0 0/0:.:161:161:0:0%:88,73,0,0 -Example1_ref 1866 . A C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:90,75,1,0 0/0:.:166:165:1:0.6%:90,75,1,0 -Example1_ref 1867 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:167:167:0:0%:93,74,0,0 -Example1_ref 1868 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:96,74,0,0 0/0:.:170:170:0:0%:96,74,0,0 -Example1_ref 1869 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:94,75,0,0 0/0:.:169:169:0:0%:94,75,0,0 -Example1_ref 1870 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:90,75,0,0 0/0:.:165:165:0:0%:90,75,0,0 -Example1_ref 1871 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:168:168:0:0%:93,75,0,0 -Example1_ref 1872 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:168:168:0:0%:93,75,0,0 -Example1_ref 1873 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:168:168:0:0%:93,75,0,0 -Example1_ref 1874 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:91,75,0,0 0/0:.:166:166:0:0%:91,75,0,0 -Example1_ref 1875 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:95,76,0,0 0/0:.:171:171:0:0%:95,76,0,0 -Example1_ref 1876 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:168:168:0:0%:93,75,0,0 -Example1_ref 1877 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:167:167:0:0%:92,75,0,0 -Example1_ref 1878 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:93,72,0,0 0/0:.:165:165:0:0%:93,72,0,0 -Example1_ref 1879 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:94,74,0,0 0/0:.:168:168:0:0%:94,74,0,0 -Example1_ref 1880 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:169:169:0:0%:95,74,0,0 -Example1_ref 1881 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:169:169:0:0%:95,74,0,0 -Example1_ref 1882 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:0:0%:94,74,0,0 0/0:.:169:168:0:0%:94,74,0,0 -Example1_ref 1883 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:94,74,0,0 0/0:.:168:168:0:0%:94,74,0,0 -Example1_ref 1884 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 1885 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 1886 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:89,73,0,0 0/0:.:162:162:0:0%:89,73,0,0 -Example1_ref 1887 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:162:162:0:0%:92,70,0,0 -Example1_ref 1888 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:94,69,0,0 0/0:.:163:163:0:0%:94,69,0,0 -Example1_ref 1889 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:93,71,0,0 0/0:.:164:164:0:0%:93,71,0,0 -Example1_ref 1890 . C A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:157:1:0.63%:89,68,1,0 0/0:.:159:157:1:0.63%:89,68,1,0 -Example1_ref 1891 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 1892 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 1893 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:171:171:0:0%:98,73,0,0 -Example1_ref 1894 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:102,72,0,0 0/0:.:174:174:0:0%:102,72,0,0 -Example1_ref 1895 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:103,73,0,0 0/0:.:176:176:0:0%:103,73,0,0 -Example1_ref 1896 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:103,73,0,0 0/0:.:176:176:0:0%:103,73,0,0 -Example1_ref 1897 . C T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=6.5759E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:174:3:1.69%:103,71,1,2 0/0:.:177:174:3:1.69%:103,71,1,2 -Example1_ref 1898 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:101,65,0,0 0/0:.:166:166:0:0%:101,65,0,0 -Example1_ref 1899 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:102,73,0,0 0/0:.:175:175:0:0%:102,73,0,0 -Example1_ref 1900 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:101,71,0,0 0/0:.:172:172:0:0%:101,71,0,0 -Example1_ref 1901 . G GC . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:170:1:0.58%:99,71,1,0 0/0:.:174:170:1:0.58%:99,71,1,0 -Example1_ref 1902 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:101,67,0,0 0/0:.:168:168:0:0%:101,67,0,0 -Example1_ref 1903 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:90,71,0,0 0/0:.:161:161:0:0%:90,71,0,0 -Example1_ref 1904 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:94,70,0,0 0/0:.:164:164:0:0%:94,70,0,0 -Example1_ref 1905 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:95,68,0,0 0/0:.:163:163:0:0%:95,68,0,0 -Example1_ref 1906 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:96,70,0,0 0/0:.:166:166:0:0%:96,70,0,0 -Example1_ref 1907 . C A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:96,69,0,1 0/0:.:166:165:1:0.6%:96,69,0,1 -Example1_ref 1908 . C T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:90,69,1,0 0/0:.:160:159:1:0.62%:90,69,1,0 -Example1_ref 1909 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:161:161:0:0%:92,69,0,0 -Example1_ref 1910 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:91,65,0,0 0/0:.:156:156:0:0%:91,65,0,0 -Example1_ref 1911 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 1912 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 1913 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:158:158:0:0%:90,68,0,0 -Example1_ref 1914 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 1915 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:91,69,0,0 0/0:.:160:160:0:0%:91,69,0,0 -Example1_ref 1916 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:161:161:0:0%:92,69,0,0 -Example1_ref 1917 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:161:161:0:0%:92,69,0,0 -Example1_ref 1918 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 1919 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:157:157:0:0%:88,69,0,0 -Example1_ref 1920 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:89,67,0,0 0/0:.:156:156:0:0%:89,67,0,0 -Example1_ref 1921 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:154:154:0:0%:88,66,0,0 -Example1_ref 1922 . A C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:87,67,1,0 0/0:.:155:154:1:0.65%:87,67,1,0 -Example1_ref 1923 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:158:158:0:0%:91,67,0,0 -Example1_ref 1924 . A C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:89,67,1,0 0/0:.:157:156:1:0.64%:89,67,1,0 -Example1_ref 1925 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:154:154:0:0%:90,64,0,0 -Example1_ref 1926 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:91,64,0,0 0/0:.:155:155:0:0%:91,64,0,0 -Example1_ref 1927 . A C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:92,63,0,1 0/0:.:156:155:1:0.64%:92,63,0,1 -Example1_ref 1928 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 1929 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:162:162:0:0%:92,70,0,0 -Example1_ref 1930 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 1931 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 1932 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 1933 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:162:162:0:0%:94,68,0,0 -Example1_ref 1934 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 1935 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:162:162:0:0%:94,68,0,0 -Example1_ref 1936 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 1937 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 1938 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:94,67,0,0 0/0:.:161:161:0:0%:94,67,0,0 -Example1_ref 1939 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:158:158:0:0%:91,67,0,0 -Example1_ref 1940 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 1941 . A G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:90,65,1,0 0/0:.:156:155:1:0.64%:90,65,1,0 -Example1_ref 1942 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:154:154:0:0%:90,64,0,0 -Example1_ref 1943 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:154:154:0:0%:88,66,0,0 -Example1_ref 1944 . C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:88,65,0,0 0/0:.:153:153:0:0%:88,65,0,0 -Example1_ref 1945 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:158:158:0:0%:91,67,0,0 -Example1_ref 1946 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:158:158:0:0%:90,68,0,0 -Example1_ref 1947 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 1948 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:158:158:0:0%:90,68,0,0 -Example1_ref 1949 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 1950 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 1951 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:86,68,0,0 0/0:.:154:154:0:0%:86,68,0,0 -Example1_ref 1952 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 1953 . T A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:89,66,1,0 0/0:.:156:155:1:0.64%:89,66,1,0 -Example1_ref 1954 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:155:155:0:0%:88,67,0,0 -Example1_ref 1955 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:155:155:0:0%:88,67,0,0 -Example1_ref 1956 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:154:154:0:0%:88,66,0,0 -Example1_ref 1957 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 1958 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 1959 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:85,66,0,0 0/0:.:151:151:0:0%:85,66,0,0 -Example1_ref 1960 . T C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:81,67,1,0 0/0:.:149:148:1:0.67%:81,67,1,0 -Example1_ref 1961 . C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:87,66,0,0 0/0:.:153:153:0:0%:87,66,0,0 -Example1_ref 1962 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:155:155:0:0%:88,67,0,0 -Example1_ref 1963 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:86,67,0,0 0/0:.:153:153:0:0%:86,67,0,0 -Example1_ref 1964 . C T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:86,66,1,0 0/0:.:153:152:1:0.65%:86,66,1,0 -Example1_ref 1965 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:86,67,0,0 0/0:.:153:153:0:0%:86,67,0,0 -Example1_ref 1966 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:0:0%:86,67,0,0 0/0:.:154:153:0:0%:86,67,0,0 -Example1_ref 1967 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 1968 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:86,66,0,0 0/0:.:152:152:0:0%:86,66,0,0 -Example1_ref 1969 . A G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:152:1:0.65%:85,67,1,0 0/0:.:154:152:1:0.65%:85,67,1,0 -Example1_ref 1970 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:157:157:0:0%:87,70,0,0 -Example1_ref 1971 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:83,71,0,0 0/0:.:154:154:0:0%:83,71,0,0 -Example1_ref 1972 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:87,75,0,0 0/0:.:162:162:0:0%:87,75,0,0 -Example1_ref 1973 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:82,75,0,0 0/0:.:157:157:0:0%:82,75,0,0 -Example1_ref 1974 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:83,75,0,0 0/0:.:158:158:0:0%:83,75,0,0 -Example1_ref 1975 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:82,74,0,0 0/0:.:156:156:0:0%:82,74,0,0 -Example1_ref 1976 . G A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:78,75,1,0 0/0:.:154:153:1:0.65%:78,75,1,0 -Example1_ref 1977 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:161:161:0:0%:85,76,0,0 -Example1_ref 1978 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:83,76,0,0 0/0:.:159:159:0:0%:83,76,0,0 -Example1_ref 1979 . A AG . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:83,73,0,1 0/0:.:157:156:1:0.64%:83,73,0,1 -Example1_ref 1980 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:160:160:0:0%:87,73,0,0 -Example1_ref 1981 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:81,72,0,0 0/0:.:153:153:0:0%:81,72,0,0 -Example1_ref 1982 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:82,69,0,0 0/0:.:151:151:0:0%:82,69,0,0 -Example1_ref 1983 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:155:155:0:0%:85,70,0,0 -Example1_ref 1984 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:82,72,0,0 0/0:.:154:154:0:0%:82,72,0,0 -Example1_ref 1985 . G T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:83,72,1,0 0/0:.:156:155:1:0.64%:83,72,1,0 -Example1_ref 1986 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:75,71,0,0 0/0:.:146:146:0:0%:75,71,0,0 -Example1_ref 1987 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:0:0%:86,70,0,0 0/0:.:157:156:0:0%:86,70,0,0 -Example1_ref 1988 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:80,70,0,0 0/0:.:150:150:0:0%:80,70,0,0 -Example1_ref 1989 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:144:144:0:0%:82,62,0,0 -Example1_ref 1990 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:84,61,0,0 0/0:.:145:145:0:0%:84,61,0,0 -Example1_ref 1991 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:81,61,0,0 0/0:.:142:142:0:0%:81,61,0,0 -Example1_ref 1992 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:80,62,0,0 0/0:.:142:142:0:0%:80,62,0,0 -Example1_ref 1993 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:80,60,0,0 0/0:.:140:140:0:0%:80,60,0,0 -Example1_ref 1994 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:82,59,0,0 0/0:.:141:141:0:0%:82,59,0,0 -Example1_ref 1995 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:84,60,0,0 0/0:.:144:144:0:0%:84,60,0,0 -Example1_ref 1996 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:144:144:0:0%:83,61,0,0 -Example1_ref 1997 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:144:144:0:0%:83,61,0,0 -Example1_ref 1998 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:0:0%:86,61,0,0 0/0:.:148:147:0:0%:86,61,0,0 -Example1_ref 1999 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:87,59,0,0 0/0:.:146:146:0:0%:87,59,0,0 -Example1_ref 2000 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:88,60,0,0 0/0:.:148:148:0:0%:88,60,0,0 -Example1_ref 2001 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:89,58,0,0 0/0:.:147:147:0:0%:89,58,0,0 -Example1_ref 2002 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:89,59,0,0 0/0:.:148:148:0:0%:89,59,0,0 -Example1_ref 2003 . C A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:89,56,0,1 0/0:.:146:145:1:0.68%:89,56,0,1 -Example1_ref 2004 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:88,54,0,0 0/0:.:142:142:0:0%:88,54,0,0 -Example1_ref 2005 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:89,57,0,0 0/0:.:146:146:0:0%:89,57,0,0 -Example1_ref 2006 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:81,58,0,0 0/0:.:140:139:0:0%:81,58,0,0 -Example1_ref 2007 . A G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:78,54,1,0 0/0:.:133:132:1:0.75%:78,54,1,0 -Example1_ref 2008 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 2009 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:77,61,0,0 0/0:.:138:138:0:0%:77,61,0,0 -Example1_ref 2010 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:77,62,0,0 0/0:.:139:139:0:0%:77,62,0,0 -Example1_ref 2011 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:72,64,0,0 0/0:.:136:136:0:0%:72,64,0,0 -Example1_ref 2012 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:79,62,0,0 0/0:.:141:141:0:0%:79,62,0,0 -Example1_ref 2013 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:137:0:0%:76,61,0,0 0/0:.:139:137:0:0%:76,61,0,0 -Example1_ref 2014 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:74,65,0,0 0/0:.:140:139:0:0%:74,65,0,0 -Example1_ref 2015 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:136:0:0%:72,64,0,0 0/0:.:138:136:0:0%:72,64,0,0 -Example1_ref 2016 . A C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:70,66,1,0 0/0:.:137:136:1:0.73%:70,66,1,0 -Example1_ref 2017 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:137:137:0:0%:73,64,0,0 -Example1_ref 2018 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:138:138:0:0%:75,63,0,0 -Example1_ref 2019 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:74,63,0,0 0/0:.:137:137:0:0%:74,63,0,0 -Example1_ref 2020 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:133:133:0:0%:74,59,0,0 -Example1_ref 2021 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:136:136:0:0%:74,62,0,0 -Example1_ref 2022 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:75,62,0,0 0/0:.:137:137:0:0%:75,62,0,0 -Example1_ref 2023 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:69,63,0,0 0/0:.:132:132:0:0%:69,63,0,0 -Example1_ref 2024 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:71,64,0,0 0/0:.:135:135:0:0%:71,64,0,0 -Example1_ref 2025 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:71,59,0,0 0/0:.:130:130:0:0%:71,59,0,0 -Example1_ref 2026 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:71,61,0,0 0/0:.:132:132:0:0%:71,61,0,0 -Example1_ref 2027 . T A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:72,60,1,0 0/0:.:133:132:1:0.75%:72,60,1,0 -Example1_ref 2028 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:135:135:0:0%:74,61,0,0 -Example1_ref 2029 . G T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:68,60,1,0 0/0:.:129:128:1:0.78%:68,60,1,0 -Example1_ref 2030 . A ATCCTG . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:73,60,1,0 0/0:.:134:133:1:0.75%:73,60,1,0 -Example1_ref 2031 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:128:128:0:0%:72,56,0,0 -Example1_ref 2032 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:128:128:0:0%:71,57,0,0 -Example1_ref 2033 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:73,59,0,0 0/0:.:132:132:0:0%:73,59,0,0 -Example1_ref 2034 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:131:131:0:0%:72,59,0,0 -Example1_ref 2035 . G T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=6.89E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:124:2:1.59%:68,56,2,0 0/0:.:126:124:2:1.59%:68,56,2,0 -Example1_ref 2036 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:70,58,0,0 0/0:.:128:128:0:0%:70,58,0,0 -Example1_ref 2037 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:0:0%:66,57,0,0 0/0:.:124:123:0:0%:66,57,0,0 -Example1_ref 2038 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:71,56,0,0 0/0:.:127:127:0:0%:71,56,0,0 -Example1_ref 2039 . C T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:75,55,1,0 0/0:.:131:130:1:0.76%:75,55,1,0 -Example1_ref 2040 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:129:129:0:0%:76,53,0,0 -Example1_ref 2041 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:134:134:0:0%:81,53,0,0 -Example1_ref 2042 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:83,54,0,0 0/0:.:137:137:0:0%:83,54,0,0 -Example1_ref 2043 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:82,57,0,0 0/0:.:139:139:0:0%:82,57,0,0 -Example1_ref 2044 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:82,57,0,0 0/0:.:139:139:0:0%:82,57,0,0 -Example1_ref 2045 . A C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=7.5091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:83,54,1,0 0/0:.:138:137:1:0.72%:83,54,1,0 -Example1_ref 2046 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:81,55,0,0 0/0:.:136:136:0:0%:81,55,0,0 -Example1_ref 2047 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 2048 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:133:133:0:0%:78,55,0,0 -Example1_ref 2049 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:80,51,0,0 0/0:.:131:131:0:0%:80,51,0,0 -Example1_ref 2050 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:79,50,0,0 0/0:.:129:129:0:0%:79,50,0,0 -Example1_ref 2051 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:126:126:0:0%:76,50,0,0 -Example1_ref 2052 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:81,51,0,0 0/0:.:132:132:0:0%:81,51,0,0 -Example1_ref 2053 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:82,50,0,0 0/0:.:132:132:0:0%:82,50,0,0 -Example1_ref 2054 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:125:125:0:0%:76,49,0,0 -Example1_ref 2055 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:80,50,0,0 0/0:.:130:130:0:0%:80,50,0,0 -Example1_ref 2056 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:81,50,0,0 0/0:.:131:131:0:0%:81,50,0,0 -Example1_ref 2057 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:81,50,0,0 0/0:.:131:131:0:0%:81,50,0,0 -Example1_ref 2058 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:129:129:0:0%:76,53,0,0 -Example1_ref 2059 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:128:128:0:0%:75,53,0,0 -Example1_ref 2060 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:83,54,0,0 0/0:.:137:137:0:0%:83,54,0,0 -Example1_ref 2061 . A G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:82,53,0,1 0/0:.:136:135:1:0.74%:82,53,0,1 -Example1_ref 2062 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:82,55,0,0 0/0:.:137:137:0:0%:82,55,0,0 -Example1_ref 2063 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:82,55,0,0 0/0:.:137:137:0:0%:82,55,0,0 -Example1_ref 2064 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:134:134:0:0%:81,53,0,0 -Example1_ref 2065 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:80,53,0,0 0/0:.:133:133:0:0%:80,53,0,0 -Example1_ref 2066 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:126:126:0:0%:73,53,0,0 -Example1_ref 2067 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 2068 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:81,52,0,0 0/0:.:133:133:0:0%:81,52,0,0 -Example1_ref 2069 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:75,51,0,0 0/0:.:126:126:0:0%:75,51,0,0 -Example1_ref 2070 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:77,52,0,0 0/0:.:129:129:0:0%:77,52,0,0 -Example1_ref 2071 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:127:127:0:0%:73,54,0,0 -Example1_ref 2072 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 2073 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:79,58,0,0 0/0:.:137:137:0:0%:79,58,0,0 -Example1_ref 2074 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:81,58,0,0 0/0:.:139:139:0:0%:81,58,0,0 -Example1_ref 2075 . A C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:1:0.72%:82,56,1,0 0/0:.:139:138:1:0.72%:82,56,1,0 -Example1_ref 2076 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:82,57,0,0 0/0:.:139:139:0:0%:82,57,0,0 -Example1_ref 2077 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:85,57,0,0 0/0:.:142:142:0:0%:85,57,0,0 -Example1_ref 2078 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:82,60,0,0 0/0:.:142:142:0:0%:82,60,0,0 -Example1_ref 2079 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:150:150:0:0%:87,63,0,0 -Example1_ref 2080 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:144:144:0:0%:82,62,0,0 -Example1_ref 2081 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:78,62,0,0 0/0:.:140:140:0:0%:78,62,0,0 -Example1_ref 2082 . A G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:84,58,0,1 0/0:.:143:142:1:0.7%:84,58,0,1 -Example1_ref 2083 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:135:135:0:0%:76,59,0,0 -Example1_ref 2084 . C A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:76,58,0,1 0/0:.:135:134:1:0.74%:76,58,0,1 -Example1_ref 2085 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:135:135:0:0%:76,59,0,0 -Example1_ref 2086 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:73,61,0,0 0/0:.:134:134:0:0%:73,61,0,0 -Example1_ref 2087 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:135:135:0:0%:74,61,0,0 -Example1_ref 2088 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:71,59,0,0 0/0:.:130:130:0:0%:71,59,0,0 -Example1_ref 2089 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:74,60,0,0 0/0:.:134:134:0:0%:74,60,0,0 -Example1_ref 2090 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:131:131:0:0%:72,59,0,0 -Example1_ref 2091 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:133:133:0:0%:74,59,0,0 -Example1_ref 2092 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:74,60,0,0 0/0:.:134:134:0:0%:74,60,0,0 -Example1_ref 2093 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:132:132:0:0%:74,58,0,0 -Example1_ref 2094 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:71,61,0,0 0/0:.:132:132:0:0%:71,61,0,0 -Example1_ref 2095 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:136:136:0:0%:74,62,0,0 -Example1_ref 2096 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:73,61,0,0 0/0:.:134:134:0:0%:73,61,0,0 -Example1_ref 2097 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:133:133:0:0%:74,59,0,0 -Example1_ref 2098 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:71,60,0,0 0/0:.:131:131:0:0%:71,60,0,0 -Example1_ref 2099 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:135:135:0:0%:74,61,0,0 -Example1_ref 2100 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:133:133:0:0%:71,62,0,0 -Example1_ref 2101 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:71,60,0,0 0/0:.:131:131:0:0%:71,60,0,0 -Example1_ref 2102 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:70,61,0,0 0/0:.:131:131:0:0%:70,61,0,0 -Example1_ref 2103 . A G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:69,61,1,0 0/0:.:131:130:1:0.76%:69,61,1,0 -Example1_ref 2104 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:71,58,0,0 0/0:.:129:129:0:0%:71,58,0,0 -Example1_ref 2105 . GA G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:68,60,1,0 0/0:.:129:128:1:0.78%:68,60,1,0 -Example1_ref 2106 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:69,61,0,0 0/0:.:130:130:0:0%:69,61,0,0 -Example1_ref 2107 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:66,63,0,0 0/0:.:129:129:0:0%:66,63,0,0 -Example1_ref 2108 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:71,57,0,0 0/0:.:129:128:0:0%:71,57,0,0 -Example1_ref 2109 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:81,61,0,0 0/0:.:142:142:0:0%:81,61,0,0 -Example1_ref 2110 . T A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:81,60,1,0 0/0:.:142:141:1:0.7%:81,60,1,0 -Example1_ref 2111 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:81,63,0,0 0/0:.:144:144:0:0%:81,63,0,0 -Example1_ref 2112 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:79,63,0,0 0/0:.:142:142:0:0%:79,63,0,0 -Example1_ref 2113 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:80,64,0,0 0/0:.:144:144:0:0%:80,64,0,0 -Example1_ref 2114 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:82,65,0,0 0/0:.:147:147:0:0%:82,65,0,0 -Example1_ref 2115 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:81,65,0,0 0/0:.:146:146:0:0%:81,65,0,0 -Example1_ref 2116 . A C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:84,65,1,0 0/0:.:150:149:1:0.67%:84,65,1,0 -Example1_ref 2117 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:82,63,0,0 0/0:.:145:145:0:0%:82,63,0,0 -Example1_ref 2118 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:140:0:0%:80,60,0,0 0/0:.:142:140:0:0%:80,60,0,0 -Example1_ref 2119 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:83,63,0,0 0/0:.:146:146:0:0%:83,63,0,0 -Example1_ref 2120 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:86,63,0,0 0/0:.:149:149:0:0%:86,63,0,0 -Example1_ref 2121 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:86,61,0,0 0/0:.:147:147:0:0%:86,61,0,0 -Example1_ref 2122 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:85,65,0,0 0/0:.:150:150:0:0%:85,65,0,0 -Example1_ref 2123 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:84,61,0,0 0/0:.:145:145:0:0%:84,61,0,0 -Example1_ref 2124 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:85,65,0,0 0/0:.:150:150:0:0%:85,65,0,0 -Example1_ref 2125 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:81,65,0,0 0/0:.:146:146:0:0%:81,65,0,0 -Example1_ref 2126 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 2127 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:82,64,0,0 0/0:.:146:146:0:0%:82,64,0,0 -Example1_ref 2128 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:84,63,0,0 0/0:.:147:147:0:0%:84,63,0,0 -Example1_ref 2129 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:88,62,0,0 0/0:.:150:150:0:0%:88,62,0,0 -Example1_ref 2130 . TA T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:86,65,0,1 0/0:.:152:151:1:0.66%:86,65,0,1 -Example1_ref 2131 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:84,66,0,0 0/0:.:150:150:0:0%:84,66,0,0 -Example1_ref 2132 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:151:151:0:0%:84,67,0,0 -Example1_ref 2133 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:83,67,0,0 0/0:.:150:150:0:0%:83,67,0,0 -Example1_ref 2134 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:85,66,0,0 0/0:.:151:151:0:0%:85,66,0,0 -Example1_ref 2135 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:87,65,0,0 0/0:.:152:152:0:0%:87,65,0,0 -Example1_ref 2136 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:151:151:0:0%:84,67,0,0 -Example1_ref 2137 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:84,66,0,0 0/0:.:150:150:0:0%:84,66,0,0 -Example1_ref 2138 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:83,66,0,0 0/0:.:149:149:0:0%:83,66,0,0 -Example1_ref 2139 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:84,68,0,0 0/0:.:152:152:0:0%:84,68,0,0 -Example1_ref 2140 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:154:154:0:0%:85,69,0,0 -Example1_ref 2141 . C A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:87,65,0,1 0/0:.:153:152:1:0.65%:87,65,0,1 -Example1_ref 2142 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 2143 . C A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:83,72,1,0 0/0:.:156:155:1:0.64%:83,72,1,0 -Example1_ref 2144 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:160:160:0:0%:87,73,0,0 -Example1_ref 2145 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:85,72,0,0 0/0:.:157:157:0:0%:85,72,0,0 -Example1_ref 2146 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:160:160:0:0%:87,73,0,0 -Example1_ref 2147 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:0:0%:87,74,0,0 0/0:.:162:161:0:0%:87,74,0,0 -Example1_ref 2148 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:87,74,0,0 0/0:.:161:161:0:0%:87,74,0,0 -Example1_ref 2149 . A G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:86,73,1,0 0/0:.:160:159:1:0.62%:86,73,1,0 -Example1_ref 2150 . C G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:87,72,0,1 0/0:.:160:159:1:0.62%:87,72,0,1 -Example1_ref 2151 . G A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:85,74,0,1 0/0:.:160:159:1:0.62%:85,74,0,1 -Example1_ref 2152 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 2153 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:159:159:0:0%:85,74,0,0 -Example1_ref 2154 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:86,76,0,0 0/0:.:162:162:0:0%:86,76,0,0 -Example1_ref 2155 . A G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:84,78,1,0 0/0:.:163:162:1:0.61%:84,78,1,0 -Example1_ref 2156 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:88,78,0,0 0/0:.:166:166:0:0%:88,78,0,0 -Example1_ref 2157 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:89,77,0,0 0/0:.:166:166:0:0%:89,77,0,0 -Example1_ref 2158 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:90,79,0,0 0/0:.:169:169:0:0%:90,79,0,0 -Example1_ref 2159 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:91,77,0,0 0/0:.:168:168:0:0%:91,77,0,0 -Example1_ref 2160 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:166:166:0:0%:87,79,0,0 -Example1_ref 2161 . G T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=6.8863E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:165:2:1.2%:88,77,2,0 0/0:.:167:165:2:1.2%:88,77,2,0 -Example1_ref 2162 . A G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:85,73,1,0 0/0:.:159:158:1:0.63%:85,73,1,0 -Example1_ref 2163 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:86,65,0,0 0/0:.:151:151:0:0%:86,65,0,0 -Example1_ref 2164 . C A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:89,70,1,0 0/0:.:160:159:1:0.62%:89,70,1,0 -Example1_ref 2165 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:157:157:0:0%:88,69,0,0 -Example1_ref 2166 . C A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:156:1:0.64%:89,67,0,1 0/0:.:158:156:1:0.64%:89,67,0,1 -Example1_ref 2167 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:86,71,0,0 0/0:.:157:157:0:0%:86,71,0,0 -Example1_ref 2168 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:89,71,0,0 0/0:.:160:160:0:0%:89,71,0,0 -Example1_ref 2169 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:157:157:0:0%:87,70,0,0 -Example1_ref 2170 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:86,71,0,0 0/0:.:157:157:0:0%:86,71,0,0 -Example1_ref 2171 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:156:156:0:0%:86,70,0,0 -Example1_ref 2172 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:154:154:0:0%:85,69,0,0 -Example1_ref 2173 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:0:0%:85,70,0,0 0/0:.:156:155:0:0%:85,70,0,0 -Example1_ref 2174 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:81,68,0,0 0/0:.:149:149:0:0%:81,68,0,0 -Example1_ref 2175 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:83,72,0,0 0/0:.:155:155:0:0%:83,72,0,0 -Example1_ref 2176 . G A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:81,74,1,0 0/0:.:156:155:1:0.64%:81,74,1,0 -Example1_ref 2177 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:79,74,0,0 0/0:.:153:153:0:0%:79,74,0,0 -Example1_ref 2178 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:155:155:0:0%:82,73,0,0 -Example1_ref 2179 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:154:0:0%:80,74,0,0 0/0:.:156:154:0:0%:80,74,0,0 -Example1_ref 2180 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:0:0%:81,75,0,0 0/0:.:157:156:0:0%:81,75,0,0 -Example1_ref 2181 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 2182 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:160:160:0:0%:86,74,0,0 -Example1_ref 2183 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:0:0%:82,75,0,0 0/0:.:158:157:0:0%:82,75,0,0 -Example1_ref 2184 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:160:160:0:0%:84,76,0,0 -Example1_ref 2185 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:159:159:0:0%:82,77,0,0 -Example1_ref 2186 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:82,76,0,0 0/0:.:158:158:0:0%:82,76,0,0 -Example1_ref 2187 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:76,74,0,0 0/0:.:150:150:0:0%:76,74,0,0 -Example1_ref 2188 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:79,78,0,0 0/0:.:157:157:0:0%:79,78,0,0 -Example1_ref 2189 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:0:0%:79,77,0,0 0/0:.:157:156:0:0%:79,77,0,0 -Example1_ref 2190 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:77,74,0,0 0/0:.:151:151:0:0%:77,74,0,0 -Example1_ref 2191 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:75,77,0,0 0/0:.:152:152:0:0%:75,77,0,0 -Example1_ref 2192 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:77,77,0,0 0/0:.:154:154:0:0%:77,77,0,0 -Example1_ref 2193 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:77,75,0,0 0/0:.:152:152:0:0%:77,75,0,0 -Example1_ref 2194 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:76,68,0,0 0/0:.:144:144:0:0%:76,68,0,0 -Example1_ref 2195 . C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:83,70,0,0 0/0:.:153:153:0:0%:83,70,0,0 -Example1_ref 2196 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:81,71,0,0 0/0:.:152:152:0:0%:81,71,0,0 -Example1_ref 2197 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:159:159:0:0%:82,77,0,0 -Example1_ref 2198 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:79,74,0,0 0/0:.:153:153:0:0%:79,74,0,0 -Example1_ref 2199 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:79,72,0,0 0/0:.:151:151:0:0%:79,72,0,0 -Example1_ref 2200 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:79,72,0,0 0/0:.:151:151:0:0%:79,72,0,0 -Example1_ref 2201 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:78,68,0,0 0/0:.:146:146:0:0%:78,68,0,0 -Example1_ref 2202 . G T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:79,63,1,0 0/0:.:143:142:1:0.7%:79,63,1,0 -Example1_ref 2203 . G T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:80,65,1,0 0/0:.:146:145:1:0.68%:80,65,1,0 -Example1_ref 2204 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:78,65,0,0 0/0:.:143:143:0:0%:78,65,0,0 -Example1_ref 2205 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:83,66,0,0 0/0:.:149:149:0:0%:83,66,0,0 -Example1_ref 2206 . A C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:82,67,1,0 0/0:.:150:149:1:0.67%:82,67,1,0 -Example1_ref 2207 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:152:152:0:0%:83,69,0,0 -Example1_ref 2208 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:81,69,0,0 0/0:.:150:150:0:0%:81,69,0,0 -Example1_ref 2209 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:82,70,0,0 0/0:.:152:152:0:0%:82,70,0,0 -Example1_ref 2210 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:83,68,0,0 0/0:.:151:151:0:0%:83,68,0,0 -Example1_ref 2211 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:81,70,0,0 0/0:.:151:151:0:0%:81,70,0,0 -Example1_ref 2212 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:80,67,0,0 0/0:.:147:147:0:0%:80,67,0,0 -Example1_ref 2213 . G A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:82,70,0,1 0/0:.:153:152:1:0.65%:82,70,0,1 -Example1_ref 2214 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:81,69,0,0 0/0:.:150:150:0:0%:81,69,0,0 -Example1_ref 2215 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:80,69,0,0 0/0:.:149:149:0:0%:80,69,0,0 -Example1_ref 2216 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:155:155:0:0%:85,70,0,0 -Example1_ref 2217 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:84,70,0,0 0/0:.:154:154:0:0%:84,70,0,0 -Example1_ref 2218 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:83,68,0,0 0/0:.:151:151:0:0%:83,68,0,0 -Example1_ref 2219 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 2220 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:155:155:0:0%:85,70,0,0 -Example1_ref 2221 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:88,72,0,0 0/0:.:160:160:0:0%:88,72,0,0 -Example1_ref 2222 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:87,72,0,0 0/0:.:159:159:0:0%:87,72,0,0 -Example1_ref 2223 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:90,73,0,0 0/0:.:163:163:0:0%:90,73,0,0 -Example1_ref 2224 . G A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:88,73,1,0 0/0:.:162:161:1:0.62%:88,73,1,0 -Example1_ref 2225 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:90,74,0,0 0/0:.:164:164:0:0%:90,74,0,0 -Example1_ref 2226 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:88,72,0,0 0/0:.:160:160:0:0%:88,72,0,0 -Example1_ref 2227 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:88,74,0,0 0/0:.:162:162:0:0%:88,74,0,0 -Example1_ref 2228 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:90,72,0,0 0/0:.:162:162:0:0%:90,72,0,0 -Example1_ref 2229 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 2230 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:160:160:0:0%:86,74,0,0 -Example1_ref 2231 . C T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:83,74,1,0 0/0:.:158:157:1:0.63%:83,74,1,0 -Example1_ref 2232 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 2233 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:160:160:0:0%:84,76,0,0 -Example1_ref 2234 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:83,75,0,0 0/0:.:158:158:0:0%:83,75,0,0 -Example1_ref 2235 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 2236 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:159:159:0:0%:82,77,0,0 -Example1_ref 2237 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:84,75,0,0 0/0:.:159:159:0:0%:84,75,0,0 -Example1_ref 2238 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 2239 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:164:164:0:0%:85,79,0,0 -Example1_ref 2240 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:86,78,0,0 0/0:.:164:164:0:0%:86,78,0,0 -Example1_ref 2241 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:89,79,0,0 0/0:.:168:168:0:0%:89,79,0,0 -Example1_ref 2242 . T G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:86,79,1,0 0/0:.:166:165:1:0.6%:86,79,1,0 -Example1_ref 2243 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:167:167:0:0%:90,77,0,0 -Example1_ref 2244 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:89,77,0,0 0/0:.:166:166:0:0%:89,77,0,0 -Example1_ref 2245 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:87,75,0,0 0/0:.:162:162:0:0%:87,75,0,0 -Example1_ref 2246 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:163:163:0:0%:86,77,0,0 -Example1_ref 2247 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:164:164:0:0%:88,76,0,0 -Example1_ref 2248 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:164:164:0:0%:88,76,0,0 -Example1_ref 2249 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:163:163:0:0%:87,76,0,0 -Example1_ref 2250 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:163:163:0:0%:87,76,0,0 -Example1_ref 2251 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:89,75,0,0 0/0:.:164:164:0:0%:89,75,0,0 -Example1_ref 2252 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:88,75,0,0 0/0:.:163:163:0:0%:88,75,0,0 -Example1_ref 2253 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:90,74,0,0 0/0:.:164:164:0:0%:90,74,0,0 -Example1_ref 2254 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:86,76,0,0 0/0:.:162:162:0:0%:86,76,0,0 -Example1_ref 2255 . G T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:85,75,1,0 0/0:.:161:160:1:0.62%:85,75,1,0 -Example1_ref 2256 . C CACTGTCTCTT . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:87,76,1,0 0/0:.:164:163:1:0.61%:87,76,1,0 -Example1_ref 2257 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:89,80,0,0 0/0:.:169:169:0:0%:89,80,0,0 -Example1_ref 2258 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:166:166:0:0%:87,79,0,0 -Example1_ref 2259 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:98,84,0,0 0/0:.:182:182:0:0%:98,84,0,0 -Example1_ref 2260 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:102,81,0,0 0/0:.:183:183:0:0%:102,81,0,0 -Example1_ref 2261 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:101,78,0,0 0/0:.:179:179:0:0%:101,78,0,0 -Example1_ref 2262 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:100,79,0,0 0/0:.:179:179:0:0%:100,79,0,0 -Example1_ref 2263 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:100,79,0,0 0/0:.:179:179:0:0%:100,79,0,0 -Example1_ref 2264 . C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:101,79,0,0 0/0:.:180:180:0:0%:101,79,0,0 -Example1_ref 2265 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:101,79,0,0 0/0:.:180:180:0:0%:101,79,0,0 -Example1_ref 2266 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:95,79,0,0 0/0:.:174:174:0:0%:95,79,0,0 -Example1_ref 2267 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:96,78,0,0 0/0:.:174:174:0:0%:96,78,0,0 -Example1_ref 2268 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 2269 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:168:168:0:0%:96,72,0,0 -Example1_ref 2270 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:96,73,0,0 0/0:.:169:169:0:0%:96,73,0,0 -Example1_ref 2271 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:171:171:0:0%:98,73,0,0 -Example1_ref 2272 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:97,73,0,0 0/0:.:170:170:0:0%:97,73,0,0 -Example1_ref 2273 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:169:169:0:0%:99,70,0,0 -Example1_ref 2274 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:99,69,0,0 0/0:.:168:168:0:0%:99,69,0,0 -Example1_ref 2275 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 2276 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:101,69,0,0 0/0:.:170:170:0:0%:101,69,0,0 -Example1_ref 2277 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:101,69,0,0 0/0:.:170:170:0:0%:101,69,0,0 -Example1_ref 2278 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:169:169:0:0%:99,70,0,0 -Example1_ref 2279 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:98,70,0,0 0/0:.:168:168:0:0%:98,70,0,0 -Example1_ref 2280 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 2281 . A G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:98,68,1,0 0/0:.:167:166:1:0.6%:98,68,1,0 -Example1_ref 2282 . A AC . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:99,70,1,0 0/0:.:170:169:1:0.59%:99,70,1,0 -Example1_ref 2283 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:165:165:0:0%:97,68,0,0 -Example1_ref 2284 . A G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:97,65,1,0 0/0:.:163:162:1:0.61%:97,65,1,0 -Example1_ref 2285 . GT G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:95,67,0,1 0/0:.:163:162:1:0.61%:95,67,0,1 -Example1_ref 2286 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:0:0%:97,64,0,0 0/0:.:162:161:0:0%:97,64,0,0 -Example1_ref 2287 . G A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:93,68,0,1 0/0:.:162:161:1:0.62%:93,68,0,1 -Example1_ref 2288 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 2289 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 2290 . C A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:94,69,0,1 0/0:.:164:163:1:0.61%:94,69,0,1 -Example1_ref 2291 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:165:165:0:0%:94,71,0,0 -Example1_ref 2292 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 2293 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:93,70,0,0 0/0:.:163:163:0:0%:93,70,0,0 -Example1_ref 2294 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:90,71,0,0 0/0:.:161:161:0:0%:90,71,0,0 -Example1_ref 2295 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:162:162:0:0%:92,70,0,0 -Example1_ref 2296 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:94,70,0,0 0/0:.:164:164:0:0%:94,70,0,0 -Example1_ref 2297 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:94,70,0,0 0/0:.:164:164:0:0%:94,70,0,0 -Example1_ref 2298 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:95,70,0,0 0/0:.:165:165:0:0%:95,70,0,0 -Example1_ref 2299 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:88,70,0,0 0/0:.:158:158:0:0%:88,70,0,0 -Example1_ref 2300 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:155:155:0:0%:86,69,0,0 -Example1_ref 2301 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:154:154:0:0%:85,69,0,0 -Example1_ref 2302 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:156:156:0:0%:86,70,0,0 -Example1_ref 2303 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:155:155:0:0%:86,69,0,0 -Example1_ref 2304 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:152:152:0:0%:83,69,0,0 -Example1_ref 2305 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:83,70,0,0 0/0:.:153:153:0:0%:83,70,0,0 -Example1_ref 2306 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:81,70,0,0 0/0:.:151:151:0:0%:81,70,0,0 -Example1_ref 2307 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:152:152:0:0%:83,69,0,0 -Example1_ref 2308 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:82,66,0,0 0/0:.:148:148:0:0%:82,66,0,0 -Example1_ref 2309 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:152:152:0:0%:83,69,0,0 -Example1_ref 2310 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:85,71,0,0 0/0:.:156:156:0:0%:85,71,0,0 -Example1_ref 2311 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:86,71,0,0 0/0:.:157:157:0:0%:86,71,0,0 -Example1_ref 2312 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:157:157:0:0%:87,70,0,0 -Example1_ref 2313 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:86,72,0,0 0/0:.:158:158:0:0%:86,72,0,0 -Example1_ref 2314 . A AG . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:86,72,1,0 0/0:.:159:158:1:0.63%:86,72,1,0 -Example1_ref 2315 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 2316 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:159:159:0:0%:85,74,0,0 -Example1_ref 2317 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:159:159:0:0%:85,74,0,0 -Example1_ref 2318 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:85,75,0,0 0/0:.:160:160:0:0%:85,75,0,0 -Example1_ref 2319 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:160:160:0:0%:86,74,0,0 -Example1_ref 2320 . C T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:90,71,1,0 0/0:.:162:161:1:0.62%:90,71,1,0 -Example1_ref 2321 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:89,74,0,0 0/0:.:163:163:0:0%:89,74,0,0 -Example1_ref 2322 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:91,72,0,0 0/0:.:163:163:0:0%:91,72,0,0 -Example1_ref 2323 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:90,75,0,0 0/0:.:165:165:0:0%:90,75,0,0 -Example1_ref 2324 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:94,74,0,0 0/0:.:168:168:0:0%:94,74,0,0 -Example1_ref 2325 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 2326 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:167:167:0:0%:92,75,0,0 -Example1_ref 2327 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 2328 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:167:167:0:0%:93,74,0,0 -Example1_ref 2329 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:91,72,0,0 0/0:.:163:163:0:0%:91,72,0,0 -Example1_ref 2330 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:0:0%:89,71,0,0 0/0:.:161:160:0:0%:89,71,0,0 -Example1_ref 2331 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:86,72,0,0 0/0:.:158:158:0:0%:86,72,0,0 -Example1_ref 2332 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:93,72,0,0 0/0:.:165:165:0:0%:93,72,0,0 -Example1_ref 2333 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 2334 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:95,76,0,0 0/0:.:171:171:0:0%:95,76,0,0 -Example1_ref 2335 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:95,77,0,0 0/0:.:172:172:0:0%:95,77,0,0 -Example1_ref 2336 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:98,79,0,0 0/0:.:177:177:0:0%:98,79,0,0 -Example1_ref 2337 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:98,80,0,0 0/0:.:178:178:0:0%:98,80,0,0 -Example1_ref 2338 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:96,80,0,0 0/0:.:176:176:0:0%:96,80,0,0 -Example1_ref 2339 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:177:177:0:0%:99,78,0,0 -Example1_ref 2340 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:177:177:0:0%:99,78,0,0 -Example1_ref 2341 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:0:0%:99,79,0,0 0/0:.:179:178:0:0%:99,79,0,0 -Example1_ref 2342 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:98,80,0,0 0/0:.:178:178:0:0%:98,80,0,0 -Example1_ref 2343 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:100,79,0,0 0/0:.:179:179:0:0%:100,79,0,0 -Example1_ref 2344 . G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:99,82,0,0 0/0:.:181:181:0:0%:99,82,0,0 -Example1_ref 2345 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:100,82,0,0 0/0:.:182:182:0:0%:100,82,0,0 -Example1_ref 2346 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:98,83,0,0 0/0:.:181:181:0:0%:98,83,0,0 -Example1_ref 2347 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:98,83,0,0 0/0:.:181:181:0:0%:98,83,0,0 -Example1_ref 2348 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:98,78,0,0 0/0:.:176:176:0:0%:98,78,0,0 -Example1_ref 2349 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:96,81,0,0 0/0:.:177:177:0:0%:96,81,0,0 -Example1_ref 2350 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:95,79,0,0 0/0:.:174:174:0:0%:95,79,0,0 -Example1_ref 2351 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:98,75,0,0 0/0:.:173:173:0:0%:98,75,0,0 -Example1_ref 2352 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:98,80,0,0 0/0:.:178:178:0:0%:98,80,0,0 -Example1_ref 2353 . G T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:96,78,1,0 0/0:.:175:174:1:0.57%:96,78,1,0 -Example1_ref 2354 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:177:177:0:0%:99,78,0,0 -Example1_ref 2355 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:100,81,0,0 0/0:.:181:181:0:0%:100,81,0,0 -Example1_ref 2356 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:104,81,0,0 0/0:.:185:185:0:0%:104,81,0,0 -Example1_ref 2357 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:107,80,0,0 0/0:.:187:187:0:0%:107,80,0,0 -Example1_ref 2358 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:108,82,0,0 0/0:.:190:190:0:0%:108,82,0,0 -Example1_ref 2359 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:110,80,0,0 0/0:.:190:190:0:0%:110,80,0,0 -Example1_ref 2360 . C A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:187:1:0.53%:105,82,1,0 0/0:.:188:187:1:0.53%:105,82,1,0 -Example1_ref 2361 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:108,83,0,0 0/0:.:191:191:0:0%:108,83,0,0 -Example1_ref 2362 . G GAGAC . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:107,82,0,1 0/0:.:190:189:1:0.53%:107,82,0,1 -Example1_ref 2363 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:108,82,0,0 0/0:.:190:190:0:0%:108,82,0,0 -Example1_ref 2364 . T C . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:108,82,1,0 0/0:.:191:190:1:0.52%:108,82,1,0 -Example1_ref 2365 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:110,79,0,0 0/0:.:189:189:0:0%:110,79,0,0 -Example1_ref 2366 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:110,79,0,0 0/0:.:189:189:0:0%:110,79,0,0 -Example1_ref 2367 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:107,79,0,0 0/0:.:186:186:0:0%:107,79,0,0 -Example1_ref 2368 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:189:189:0:0%:111,78,0,0 -Example1_ref 2369 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:108,79,0,0 0/0:.:187:187:0:0%:108,79,0,0 -Example1_ref 2370 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:108,78,0,0 0/0:.:186:186:0:0%:108,78,0,0 -Example1_ref 2371 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:106,76,0,0 0/0:.:182:182:0:0%:106,76,0,0 -Example1_ref 2372 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:107,78,0,0 0/0:.:185:185:0:0%:107,78,0,0 -Example1_ref 2373 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:107,78,0,0 0/0:.:185:185:0:0%:107,78,0,0 -Example1_ref 2374 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:108,77,0,0 0/0:.:185:185:0:0%:108,77,0,0 -Example1_ref 2375 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:107,76,0,0 0/0:.:183:183:0:0%:107,76,0,0 -Example1_ref 2376 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:109,75,0,0 0/0:.:184:184:0:0%:109,75,0,0 -Example1_ref 2377 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:108,75,0,0 0/0:.:183:183:0:0%:108,75,0,0 -Example1_ref 2378 . T C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:108,75,1,0 0/0:.:184:183:1:0.54%:108,75,1,0 -Example1_ref 2379 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:108,75,0,0 0/0:.:183:183:0:0%:108,75,0,0 -Example1_ref 2380 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:108,75,0,0 0/0:.:183:183:0:0%:108,75,0,0 -Example1_ref 2381 . T C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:105,76,1,0 0/0:.:182:181:1:0.55%:105,76,1,0 -Example1_ref 2382 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:105,77,0,0 0/0:.:182:182:0:0%:105,77,0,0 -Example1_ref 2383 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:106,77,0,0 0/0:.:183:183:0:0%:106,77,0,0 -Example1_ref 2384 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:106,74,0,0 0/0:.:180:180:0:0%:106,74,0,0 -Example1_ref 2385 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:102,75,0,0 0/0:.:177:177:0:0%:102,75,0,0 -Example1_ref 2386 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:97,74,0,0 0/0:.:171:171:0:0%:97,74,0,0 -Example1_ref 2387 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:99,71,0,0 0/0:.:170:170:0:0%:99,71,0,0 -Example1_ref 2388 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:97,71,0,0 0/0:.:168:168:0:0%:97,71,0,0 -Example1_ref 2389 . A G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:100,69,0,1 0/0:.:170:169:1:0.59%:100,69,0,1 -Example1_ref 2390 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:103,71,0,0 0/0:.:174:174:0:0%:103,71,0,0 -Example1_ref 2391 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:102,67,0,0 0/0:.:169:169:0:0%:102,67,0,0 -Example1_ref 2392 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:102,70,0,0 0/0:.:172:172:0:0%:102,70,0,0 -Example1_ref 2393 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:104,71,0,0 0/0:.:175:175:0:0%:104,71,0,0 -Example1_ref 2394 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:103,71,0,0 0/0:.:174:174:0:0%:103,71,0,0 -Example1_ref 2395 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:100,71,0,0 0/0:.:171:171:0:0%:100,71,0,0 -Example1_ref 2396 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:100,69,0,0 0/0:.:169:169:0:0%:100,69,0,0 -Example1_ref 2397 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:100,68,0,0 0/0:.:168:168:0:0%:100,68,0,0 -Example1_ref 2398 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:171:171:0:0%:103,68,0,0 -Example1_ref 2399 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:100,67,0,0 0/0:.:167:167:0:0%:100,67,0,0 -Example1_ref 2400 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:101,67,0,0 0/0:.:168:168:0:0%:101,67,0,0 -Example1_ref 2401 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:99,68,0,0 0/0:.:167:167:0:0%:99,68,0,0 -Example1_ref 2402 . A T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:99,68,1,0 0/0:.:168:167:1:0.6%:99,68,1,0 -Example1_ref 2403 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:101,66,0,0 0/0:.:167:167:0:0%:101,66,0,0 -Example1_ref 2404 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:165:165:0:0%:97,68,0,0 -Example1_ref 2405 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:169:169:0:0%:99,70,0,0 -Example1_ref 2406 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:96,68,0,0 0/0:.:164:164:0:0%:96,68,0,0 -Example1_ref 2407 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:96,70,0,0 0/0:.:166:166:0:0%:96,70,0,0 -Example1_ref 2408 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:97,70,0,0 0/0:.:167:167:0:0%:97,70,0,0 -Example1_ref 2409 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:96,67,0,0 0/0:.:163:163:0:0%:96,67,0,0 -Example1_ref 2410 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 2411 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 2412 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:95,71,0,0 0/0:.:166:166:0:0%:95,71,0,0 -Example1_ref 2413 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:91,73,0,0 0/0:.:164:164:0:0%:91,73,0,0 -Example1_ref 2414 . T C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:95,73,1,0 0/0:.:169:168:1:0.59%:95,73,1,0 -Example1_ref 2415 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:166:166:0:0%:94,72,0,0 -Example1_ref 2416 . AC A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:97,74,0,1 0/0:.:172:171:1:0.58%:97,74,0,1 -Example1_ref 2417 . C CTGTCTCTT . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:1:0.61%:92,72,1,0 0/0:.:166:164:1:0.61%:92,72,1,0 -Example1_ref 2418 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:92,75,0,0 0/0:.:168:167:0:0%:92,75,0,0 -Example1_ref 2419 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:0:0%:93,73,0,0 0/0:.:167:166:0:0%:93,73,0,0 -Example1_ref 2420 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:0:0%:94,74,0,0 0/0:.:169:168:0:0%:94,74,0,0 -Example1_ref 2421 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:97,73,0,0 0/0:.:170:170:0:0%:97,73,0,0 -Example1_ref 2422 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:95,72,0,0 0/0:.:167:167:0:0%:95,72,0,0 -Example1_ref 2423 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:166:166:0:0%:94,72,0,0 -Example1_ref 2424 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:97,67,0,0 0/0:.:164:164:0:0%:97,67,0,0 -Example1_ref 2425 . G A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:163:1:0.61%:93,70,0,1 0/0:.:165:163:1:0.61%:93,70,0,1 -Example1_ref 2426 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:92,71,0,0 0/0:.:163:163:0:0%:92,71,0,0 -Example1_ref 2427 . AG A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:95,70,1,0 0/0:.:166:165:1:0.6%:95,70,1,0 -Example1_ref 2428 . G A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:158:1:0.63%:92,66,0,1 0/0:.:160:158:1:0.63%:92,66,0,1 -Example1_ref 2429 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:161:161:0:0%:92,69,0,0 -Example1_ref 2430 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:94,67,0,0 0/0:.:161:161:0:0%:94,67,0,0 -Example1_ref 2431 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 2432 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:93,70,0,0 0/0:.:163:163:0:0%:93,70,0,0 -Example1_ref 2433 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 2434 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:90,72,0,0 0/0:.:162:162:0:0%:90,72,0,0 -Example1_ref 2435 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:90,72,0,0 0/0:.:162:162:0:0%:90,72,0,0 -Example1_ref 2436 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:89,72,0,0 0/0:.:161:161:0:0%:89,72,0,0 -Example1_ref 2437 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:91,71,0,0 0/0:.:162:162:0:0%:91,71,0,0 -Example1_ref 2438 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:162:162:0:0%:92,70,0,0 -Example1_ref 2439 . A G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:90,69,0,1 0/0:.:160:159:1:0.62%:90,69,0,1 -Example1_ref 2440 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 2441 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 2442 . T TA . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=6.5779E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:151:3:1.95%:84,67,2,1 0/0:.:155:151:3:1.95%:84,67,2,1 -Example1_ref 2443 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:89,69,0,0 0/0:.:158:158:0:0%:89,69,0,0 -Example1_ref 2444 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:87,69,0,0 0/0:.:156:156:0:0%:87,69,0,0 -Example1_ref 2445 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 2446 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:157:157:0:0%:87,70,0,0 -Example1_ref 2447 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:0:0%:84,67,0,0 0/0:.:152:151:0:0%:84,67,0,0 -Example1_ref 2448 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:85,66,0,0 0/0:.:151:151:0:0%:85,66,0,0 -Example1_ref 2449 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:79,67,0,0 0/0:.:146:146:0:0%:79,67,0,0 -Example1_ref 2450 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:75,67,0,0 0/0:.:142:142:0:0%:75,67,0,0 -Example1_ref 2451 . G A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=6.8879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:145:2:1.36%:78,67,1,1 0/0:.:147:145:2:1.36%:78,67,1,1 -Example1_ref 2452 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:76,68,0,0 0/0:.:144:144:0:0%:76,68,0,0 -Example1_ref 2453 . G GA . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:76,70,1,0 0/0:.:147:146:1:0.68%:76,70,1,0 -Example1_ref 2454 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:72,67,0,0 0/0:.:139:139:0:0%:72,67,0,0 -Example1_ref 2455 . A C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:76,67,0,1 0/0:.:144:143:1:0.69%:76,67,0,1 -Example1_ref 2456 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:75,66,0,0 0/0:.:141:141:0:0%:75,66,0,0 -Example1_ref 2457 . A G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:76,68,0,1 0/0:.:145:144:1:0.69%:76,68,0,1 -Example1_ref 2458 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:80,67,0,0 0/0:.:147:147:0:0%:80,67,0,0 -Example1_ref 2459 . G A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:75,68,1,0 0/0:.:144:143:1:0.69%:75,68,1,0 -Example1_ref 2460 . G A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:142:1:0.7%:74,68,1,0 0/0:.:144:142:1:0.7%:74,68,1,0 -Example1_ref 2461 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:74,71,0,0 0/0:.:145:145:0:0%:74,71,0,0 -Example1_ref 2462 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:76,71,0,0 0/0:.:147:147:0:0%:76,71,0,0 -Example1_ref 2463 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:78,72,0,0 0/0:.:150:150:0:0%:78,72,0,0 -Example1_ref 2464 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:81,72,0,0 0/0:.:153:153:0:0%:81,72,0,0 -Example1_ref 2465 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:81,80,0,0 0/0:.:161:161:0:0%:81,80,0,0 -Example1_ref 2466 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:78,78,0,0 0/0:.:156:156:0:0%:78,78,0,0 -Example1_ref 2467 . T C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:148:1:0.67%:72,76,1,0 0/0:.:150:148:1:0.67%:72,76,1,0 -Example1_ref 2468 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:160:160:0:0%:84,76,0,0 -Example1_ref 2469 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 2470 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:83,79,0,0 0/0:.:162:162:0:0%:83,79,0,0 -Example1_ref 2471 . T C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=6.8867E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:160:2:1.23%:81,79,2,0 0/0:.:162:160:2:1.23%:81,79,2,0 -Example1_ref 2472 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:81,78,0,0 0/0:.:159:159:0:0%:81,78,0,0 -Example1_ref 2473 . A T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:85,78,0,1 0/0:.:164:163:1:0.61%:85,78,0,1 -Example1_ref 2474 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:86,79,0,0 0/0:.:165:165:0:0%:86,79,0,0 -Example1_ref 2475 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:160:160:0:0%:83,77,0,0 -Example1_ref 2476 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:164:164:0:0%:85,79,0,0 -Example1_ref 2477 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:159:159:0:0%:82,77,0,0 -Example1_ref 2478 . A C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:83,76,0,1 0/0:.:160:159:1:0.62%:83,76,0,1 -Example1_ref 2479 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:83,75,0,0 0/0:.:158:158:0:0%:83,75,0,0 -Example1_ref 2480 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:160:160:0:0%:83,77,0,0 -Example1_ref 2481 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:163:163:0:0%:86,77,0,0 -Example1_ref 2482 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:163:163:0:0%:86,77,0,0 -Example1_ref 2483 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 2484 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:85,80,0,0 0/0:.:165:165:0:0%:85,80,0,0 -Example1_ref 2485 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:90,81,0,0 0/0:.:171:171:0:0%:90,81,0,0 -Example1_ref 2486 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:89,80,0,0 0/0:.:169:169:0:0%:89,80,0,0 -Example1_ref 2487 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:91,77,0,0 0/0:.:168:168:0:0%:91,77,0,0 -Example1_ref 2488 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:94,80,0,0 0/0:.:174:174:0:0%:94,80,0,0 -Example1_ref 2489 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:93,79,0,0 0/0:.:173:172:0:0%:93,79,0,0 -Example1_ref 2490 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:175:175:0:0%:94,81,0,0 -Example1_ref 2491 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:0:0%:95,81,0,0 0/0:.:177:176:0:0%:95,81,0,0 -Example1_ref 2492 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:97,83,0,0 0/0:.:181:180:0:0%:97,83,0,0 -Example1_ref 2493 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:95,81,0,0 0/0:.:176:176:0:0%:95,81,0,0 -Example1_ref 2494 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:97,84,0,0 0/0:.:181:181:0:0%:97,84,0,0 -Example1_ref 2495 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:0:0%:98,84,0,0 0/0:.:183:182:0:0%:98,84,0,0 -Example1_ref 2496 . C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:0:0%:98,81,0,0 0/0:.:180:179:0:0%:98,81,0,0 -Example1_ref 2497 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:0:0%:90,84,0,0 0/0:.:175:174:0:0%:90,84,0,0 -Example1_ref 2498 . A AG . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:98,86,0,1 0/0:.:185:184:1:0.54%:98,86,0,1 -Example1_ref 2499 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:107,85,0,0 0/0:.:192:192:0:0%:107,85,0,0 -Example1_ref 2500 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:105,89,0,0 0/0:.:194:194:0:0%:105,89,0,0 -Example1_ref 2501 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:105,91,0,0 0/0:.:196:196:0:0%:105,91,0,0 -Example1_ref 2502 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:109,92,0,0 0/0:.:201:201:0:0%:109,92,0,0 -Example1_ref 2503 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:105,89,0,0 0/0:.:194:194:0:0%:105,89,0,0 -Example1_ref 2504 . C . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:0:0%:107,93,0,0 0/0:.:201:200:0:0%:107,93,0,0 -Example1_ref 2505 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:110,91,0,0 0/0:.:201:201:0:0%:110,91,0,0 -Example1_ref 2506 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:111,91,0,0 0/0:.:202:202:0:0%:111,91,0,0 -Example1_ref 2507 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:113,90,0,0 0/0:.:203:203:0:0%:113,90,0,0 -Example1_ref 2508 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:112,88,0,0 0/0:.:200:200:0:0%:112,88,0,0 -Example1_ref 2509 . T A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:109,86,0,1 0/0:.:196:195:1:0.51%:109,86,0,1 -Example1_ref 2510 . C . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:105,86,0,0 0/0:.:191:191:0:0%:105,86,0,0 -Example1_ref 2511 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:108,90,0,0 0/0:.:198:198:0:0%:108,90,0,0 -Example1_ref 2512 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:106,89,0,0 0/0:.:195:195:0:0%:106,89,0,0 -Example1_ref 2513 . A ATCTGTC . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:105,89,1,0 0/0:.:195:194:1:0.51%:105,89,1,0 -Example1_ref 2514 . T G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:112,89,0,1 0/0:.:202:201:1:0.5%:112,89,0,1 -Example1_ref 2515 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:115,90,0,0 0/0:.:205:205:0:0%:115,90,0,0 -Example1_ref 2516 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:113,91,0,0 0/0:.:204:204:0:0%:113,91,0,0 -Example1_ref 2517 . C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:114,93,0,0 0/0:.:207:207:0:0%:114,93,0,0 -Example1_ref 2518 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:116,92,0,0 0/0:.:208:208:0:0%:116,92,0,0 -Example1_ref 2519 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:111,92,0,0 0/0:.:203:203:0:0%:111,92,0,0 -Example1_ref 2520 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:115,95,0,0 0/0:.:210:210:0:0%:115,95,0,0 -Example1_ref 2521 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:116,94,0,0 0/0:.:210:210:0:0%:116,94,0,0 -Example1_ref 2522 . C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:115,92,0,0 0/0:.:207:207:0:0%:115,92,0,0 -Example1_ref 2523 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:112,82,0,0 0/0:.:194:194:0:0%:112,82,0,0 -Example1_ref 2524 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:112,85,0,0 0/0:.:197:197:0:0%:112,85,0,0 -Example1_ref 2525 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:117,87,0,0 0/0:.:204:204:0:0%:117,87,0,0 -Example1_ref 2526 . A T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:116,89,1,0 0/0:.:206:205:1:0.49%:116,89,1,0 -Example1_ref 2527 . T A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:113,87,1,0 0/0:.:201:200:1:0.5%:113,87,1,0 -Example1_ref 2528 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:117,86,0,0 0/0:.:203:203:0:0%:117,86,0,0 -Example1_ref 2529 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:118,89,0,0 0/0:.:207:207:0:0%:118,89,0,0 -Example1_ref 2530 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:117,90,0,0 0/0:.:207:207:0:0%:117,90,0,0 -Example1_ref 2531 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:117,89,0,0 0/0:.:206:206:0:0%:117,89,0,0 -Example1_ref 2532 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:113,89,0,0 0/0:.:202:202:0:0%:113,89,0,0 -Example1_ref 2533 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:116,89,0,0 0/0:.:205:205:0:0%:116,89,0,0 -Example1_ref 2534 . G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:115,85,0,0 0/0:.:200:200:0:0%:115,85,0,0 -Example1_ref 2535 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:111,86,0,0 0/0:.:197:197:0:0%:111,86,0,0 -Example1_ref 2536 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:115,88,0,0 0/0:.:203:203:0:0%:115,88,0,0 -Example1_ref 2537 . A T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:119,86,0,1 0/0:.:206:205:1:0.49%:119,86,0,1 -Example1_ref 2538 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:117,88,0,0 0/0:.:205:205:0:0%:117,88,0,0 -Example1_ref 2539 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:114,86,0,0 0/0:.:200:200:0:0%:114,86,0,0 -Example1_ref 2540 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:118,86,0,0 0/0:.:204:204:0:0%:118,86,0,0 -Example1_ref 2541 . GA G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:115,86,0,1 0/0:.:202:201:1:0.5%:115,86,0,1 -Example1_ref 2542 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:114,84,0,0 0/0:.:198:198:0:0%:114,84,0,0 -Example1_ref 2543 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:114,84,0,0 0/0:.:198:198:0:0%:114,84,0,0 -Example1_ref 2544 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:113,84,0,0 0/0:.:197:197:0:0%:113,84,0,0 -Example1_ref 2545 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:114,85,0,0 0/0:.:199:199:0:0%:114,85,0,0 -Example1_ref 2546 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:105,84,0,0 0/0:.:189:189:0:0%:105,84,0,0 -Example1_ref 2547 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:106,84,0,0 0/0:.:190:190:0:0%:106,84,0,0 -Example1_ref 2548 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:102,84,0,0 0/0:.:186:186:0:0%:102,84,0,0 -Example1_ref 2549 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:107,85,0,0 0/0:.:192:192:0:0%:107,85,0,0 -Example1_ref 2550 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:109,84,0,0 0/0:.:193:193:0:0%:109,84,0,0 -Example1_ref 2551 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:108,86,0,0 0/0:.:194:194:0:0%:108,86,0,0 -Example1_ref 2552 . AAAC A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:106,85,0,1 0/0:.:192:191:1:0.52%:106,85,0,1 -Example1_ref 2553 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:103,85,0,0 0/0:.:188:188:0:0%:103,85,0,0 -Example1_ref 2554 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:109,85,0,0 0/0:.:194:194:0:0%:109,85,0,0 -Example1_ref 2555 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:109,86,0,0 0/0:.:195:195:0:0%:109,86,0,0 -Example1_ref 2556 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:0:0%:110,83,0,0 0/0:.:194:193:0:0%:110,83,0,0 -Example1_ref 2557 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:0:0%:110,86,0,0 0/0:.:197:196:0:0%:110,86,0,0 -Example1_ref 2558 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:110,85,0,0 0/0:.:195:195:0:0%:110,85,0,0 -Example1_ref 2559 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:108,87,0,0 0/0:.:195:195:0:0%:108,87,0,0 -Example1_ref 2560 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:113,87,0,0 0/0:.:200:200:0:0%:113,87,0,0 -Example1_ref 2561 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:116,87,0,0 0/0:.:203:203:0:0%:116,87,0,0 -Example1_ref 2562 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:117,85,0,0 0/0:.:202:202:0:0%:117,85,0,0 -Example1_ref 2563 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:0:0%:118,88,0,0 0/0:.:207:206:0:0%:118,88,0,0 -Example1_ref 2564 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:116,89,0,0 0/0:.:205:205:0:0%:116,89,0,0 -Example1_ref 2565 . C A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:116,90,1,0 0/0:.:207:206:1:0.48%:116,90,1,0 -Example1_ref 2566 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:117,88,0,0 0/0:.:205:205:0:0%:117,88,0,0 -Example1_ref 2567 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:118,89,0,0 0/0:.:207:207:0:0%:118,89,0,0 -Example1_ref 2568 . C A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=6.884E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:208:2:0.95%:118,90,2,0 0/0:.:210:208:2:0.95%:118,90,2,0 -Example1_ref 2569 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:123,88,0,0 0/0:.:211:211:0:0%:123,88,0,0 -Example1_ref 2570 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:120,91,0,0 0/0:.:211:211:0:0%:120,91,0,0 -Example1_ref 2571 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:119,91,0,0 0/0:.:210:210:0:0%:119,91,0,0 -Example1_ref 2572 . G . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:119,92,0,0 0/0:.:211:211:0:0%:119,92,0,0 -Example1_ref 2573 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:122,92,0,0 0/0:.:214:214:0:0%:122,92,0,0 -Example1_ref 2574 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:124,92,0,0 0/0:.:216:216:0:0%:124,92,0,0 -Example1_ref 2575 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:128,93,0,0 0/0:.:221:221:0:0%:128,93,0,0 -Example1_ref 2576 . C CCTG . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:127,93,1,0 0/0:.:221:220:1:0.45%:127,93,1,0 -Example1_ref 2577 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:127,92,0,0 0/0:.:219:219:0:0%:127,92,0,0 -Example1_ref 2578 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:127,92,0,0 0/0:.:219:219:0:0%:127,92,0,0 -Example1_ref 2579 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:124,92,0,0 0/0:.:216:216:0:0%:124,92,0,0 -Example1_ref 2580 . G A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:116,92,1,0 0/0:.:209:208:1:0.48%:116,92,1,0 -Example1_ref 2581 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:110,92,0,0 0/0:.:202:202:0:0%:110,92,0,0 -Example1_ref 2582 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:119,89,0,0 0/0:.:208:208:0:0%:119,89,0,0 -Example1_ref 2583 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:120,90,0,0 0/0:.:210:210:0:0%:120,90,0,0 -Example1_ref 2584 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:120,91,0,0 0/0:.:211:211:0:0%:120,91,0,0 -Example1_ref 2585 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:124,92,0,0 0/0:.:216:216:0:0%:124,92,0,0 -Example1_ref 2586 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:121,92,0,0 0/0:.:213:213:0:0%:121,92,0,0 -Example1_ref 2587 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:126,94,0,0 0/0:.:220:220:0:0%:126,94,0,0 -Example1_ref 2588 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:125,94,0,0 0/0:.:219:219:0:0%:125,94,0,0 -Example1_ref 2589 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:128,93,0,0 0/0:.:221:221:0:0%:128,93,0,0 -Example1_ref 2590 . G T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:128,93,1,0 0/0:.:222:221:1:0.45%:128,93,1,0 -Example1_ref 2591 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:132,93,0,0 0/0:.:225:225:0:0%:132,93,0,0 -Example1_ref 2592 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:134,93,0,0 0/0:.:227:227:0:0%:134,93,0,0 -Example1_ref 2593 . A T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:135,92,0,1 0/0:.:228:227:1:0.44%:135,92,0,1 -Example1_ref 2594 . T C . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:231:1:0.43%:138,93,0,1 0/0:.:233:231:1:0.43%:138,93,0,1 -Example1_ref 2595 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:137,93,0,0 0/0:.:230:230:0:0%:137,93,0,0 -Example1_ref 2596 . C CCTGTCTCTTAT . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:135,94,1,0 0/0:.:230:229:1:0.43%:135,94,1,0 -Example1_ref 2597 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:0:0%:136,91,0,0 0/0:.:228:227:0:0%:136,91,0,0 -Example1_ref 2598 . G A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:135,91,0,1 0/0:.:227:226:1:0.44%:135,91,0,1 -Example1_ref 2599 . G T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:126,90,1,0 0/0:.:217:216:1:0.46%:126,90,1,0 -Example1_ref 2600 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:133,91,0,0 0/0:.:224:224:0:0%:133,91,0,0 -Example1_ref 2601 . A ACT . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:139,92,1,0 0/0:.:232:231:1:0.43%:139,92,1,0 -Example1_ref 2602 . G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:132,92,0,0 0/0:.:224:224:0:0%:132,92,0,0 -Example1_ref 2603 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:137,91,0,0 0/0:.:228:228:0:0%:137,91,0,0 -Example1_ref 2604 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:145,92,0,0 0/0:.:237:237:0:0%:145,92,0,0 -Example1_ref 2605 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:145,102,0,0 0/0:.:247:247:0:0%:145,102,0,0 -Example1_ref 2606 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:140,104,0,0 0/0:.:244:244:0:0%:140,104,0,0 -Example1_ref 2607 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:146,104,0,0 0/0:.:250:250:0:0%:146,104,0,0 -Example1_ref 2608 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:142,105,0,0 0/0:.:247:247:0:0%:142,105,0,0 -Example1_ref 2609 . C . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:143,107,0,0 0/0:.:250:250:0:0%:143,107,0,0 -Example1_ref 2610 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:253:0:0%:144,109,0,0 0/0:.:254:253:0:0%:144,109,0,0 -Example1_ref 2611 . G . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:143,111,0,0 0/0:.:254:254:0:0%:143,111,0,0 -Example1_ref 2612 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:141,110,0,0 0/0:.:251:251:0:0%:141,110,0,0 -Example1_ref 2613 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:144,110,0,0 0/0:.:254:254:0:0%:144,110,0,0 -Example1_ref 2614 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:148,111,0,0 0/0:.:259:259:0:0%:148,111,0,0 -Example1_ref 2615 . C A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:146,111,1,0 0/0:.:258:257:1:0.39%:146,111,1,0 -Example1_ref 2616 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:149,109,0,0 0/0:.:258:258:0:0%:149,109,0,0 -Example1_ref 2617 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:148,110,0,0 0/0:.:258:258:0:0%:148,110,0,0 -Example1_ref 2618 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:152,111,0,0 0/0:.:263:263:0:0%:152,111,0,0 -Example1_ref 2619 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:154,109,0,0 0/0:.:263:263:0:0%:154,109,0,0 -Example1_ref 2620 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:153,109,0,0 0/0:.:262:262:0:0%:153,109,0,0 -Example1_ref 2621 . C . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:0:0%:150,108,0,0 0/0:.:259:258:0:0%:150,108,0,0 -Example1_ref 2622 . T C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:149,102,1,0 0/0:.:252:251:1:0.4%:149,102,1,0 -Example1_ref 2623 . C A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:153,108,0,1 0/0:.:262:261:1:0.38%:153,108,0,1 -Example1_ref 2624 . C . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:155,109,0,0 0/0:.:264:264:0:0%:155,109,0,0 -Example1_ref 2625 . A . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:161,111,0,0 0/0:.:272:272:0:0%:161,111,0,0 -Example1_ref 2626 . T A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:160,110,1,0 0/0:.:271:270:1:0.37%:160,110,1,0 -Example1_ref 2627 . C T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:164,113,1,0 0/0:.:278:277:1:0.36%:164,113,1,0 -Example1_ref 2628 . AT A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:163,115,1,0 0/0:.:279:278:1:0.36%:163,115,1,0 -Example1_ref 2629 . T C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:272:1:0.37%:159,113,1,0 0/0:.:274:272:1:0.37%:159,113,1,0 -Example1_ref 2630 . G . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:162,111,0,0 0/0:.:273:273:0:0%:162,111,0,0 -Example1_ref 2631 . G A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:158,115,1,0 0/0:.:274:273:1:0.36%:158,115,1,0 -Example1_ref 2632 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:164,115,0,0 0/0:.:279:279:0:0%:164,115,0,0 -Example1_ref 2633 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:165,115,0,0 0/0:.:280:280:0:0%:165,115,0,0 -Example1_ref 2634 . T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:169,114,0,0 0/0:.:283:283:0:0%:169,114,0,0 -Example1_ref 2635 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:165,110,0,0 0/0:.:275:275:0:0%:165,110,0,0 -Example1_ref 2636 . T C . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:264:1:0.38%:154,110,0,1 0/0:.:266:264:1:0.38%:154,110,0,1 -Example1_ref 2637 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:163,110,0,0 0/0:.:273:273:0:0%:163,110,0,0 -Example1_ref 2638 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:169,115,0,0 0/0:.:284:284:0:0%:169,115,0,0 -Example1_ref 2639 . C . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:166,113,0,0 0/0:.:279:279:0:0%:166,113,0,0 -Example1_ref 2640 . C . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:280:0:0%:164,116,0,0 0/0:.:281:280:0:0%:164,116,0,0 -Example1_ref 2641 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:169,115,0,0 0/0:.:284:284:0:0%:169,115,0,0 -Example1_ref 2642 . T . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:169,112,0,0 0/0:.:281:281:0:0%:169,112,0,0 -Example1_ref 2643 . T . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:169,112,0,0 0/0:.:281:281:0:0%:169,112,0,0 -Example1_ref 2644 . G A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:274:1:0.36%:162,112,1,0 0/0:.:276:274:1:0.36%:162,112,1,0 -Example1_ref 2645 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:173,115,0,0 0/0:.:288:288:0:0%:173,115,0,0 -Example1_ref 2646 . C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:0:0%:179,112,0,0 0/0:.:292:291:0:0%:179,112,0,0 -Example1_ref 2647 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:179,115,0,0 0/0:.:294:294:0:0%:179,115,0,0 -Example1_ref 2648 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:173,116,0,0 0/0:.:289:289:0:0%:173,116,0,0 -Example1_ref 2649 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:178,116,0,0 0/0:.:294:294:0:0%:178,116,0,0 -Example1_ref 2650 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:175,117,0,0 0/0:.:292:292:0:0%:175,117,0,0 -Example1_ref 2651 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:174,119,0,0 0/0:.:293:293:0:0%:174,119,0,0 -Example1_ref 2652 . C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:175,117,0,0 0/0:.:292:292:0:0%:175,117,0,0 -Example1_ref 2653 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:174,115,0,0 0/0:.:289:289:0:0%:174,115,0,0 -Example1_ref 2654 . C . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:174,117,0,0 0/0:.:291:291:0:0%:174,117,0,0 -Example1_ref 2655 . T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:172,111,0,0 0/0:.:283:283:0:0%:172,111,0,0 -Example1_ref 2656 . G T . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:165,113,1,0 0/0:.:279:278:1:0.36%:165,113,1,0 -Example1_ref 2657 . A C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:282:1:0.35%:172,110,1,0 0/0:.:284:282:1:0.35%:172,110,1,0 -Example1_ref 2658 . C CT . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:276:1:0.36%:167,109,1,0 0/0:.:278:276:1:0.36%:167,109,1,0 -Example1_ref 2659 . C . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:166,112,0,0 0/0:.:278:278:0:0%:166,112,0,0 -Example1_ref 2660 . G . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:163,112,0,0 0/0:.:275:275:0:0%:163,112,0,0 -Example1_ref 2661 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:169,110,0,0 0/0:.:279:279:0:0%:169,110,0,0 -Example1_ref 2662 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:170,113,0,0 0/0:.:283:283:0:0%:170,113,0,0 -Example1_ref 2663 . C . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:169,116,0,0 0/0:.:285:285:0:0%:169,116,0,0 -Example1_ref 2664 . T C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:165,118,1,0 0/0:.:284:283:1:0.35%:165,118,1,0 -Example1_ref 2665 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:170,116,0,0 0/0:.:286:286:0:0%:170,116,0,0 -Example1_ref 2666 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:173,118,0,0 0/0:.:291:291:0:0%:173,118,0,0 -Example1_ref 2667 . A ACCTGT . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=6.8815E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:287:2:0.69%:165,122,2,0 0/0:.:289:287:2:0.69%:165,122,2,0 -Example1_ref 2668 . C G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:285:1:0.35%:165,120,0,1 0/0:.:287:285:1:0.35%:165,120,0,1 -Example1_ref 2669 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:167,120,0,0 0/0:.:287:287:0:0%:167,120,0,0 -Example1_ref 2670 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:161,121,0,0 0/0:.:282:282:0:0%:161,121,0,0 -Example1_ref 2671 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:166,122,0,0 0/0:.:288:288:0:0%:166,122,0,0 -Example1_ref 2672 . C CAG . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:166,122,0,1 0/0:.:289:288:1:0.35%:166,122,0,1 -Example1_ref 2673 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:167,119,0,0 0/0:.:286:286:0:0%:167,119,0,0 -Example1_ref 2674 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:0:0%:166,118,0,0 0/0:.:285:284:0:0%:166,118,0,0 -Example1_ref 2675 . G . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:157,118,0,0 0/0:.:275:275:0:0%:157,118,0,0 -Example1_ref 2676 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:161,114,0,0 0/0:.:275:275:0:0%:161,114,0,0 -Example1_ref 2677 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:157,118,0,0 0/0:.:275:275:0:0%:157,118,0,0 -Example1_ref 2678 . C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:272:0:0%:155,117,0,0 0/0:.:274:272:0:0%:155,117,0,0 -Example1_ref 2679 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:157,112,0,0 0/0:.:269:269:0:0%:157,112,0,0 -Example1_ref 2680 . A G . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:155,115,1,0 0/0:.:271:270:1:0.37%:155,115,1,0 -Example1_ref 2681 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:160,113,0,0 0/0:.:273:273:0:0%:160,113,0,0 -Example1_ref 2682 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:153,109,0,0 0/0:.:262:262:0:0%:153,109,0,0 -Example1_ref 2683 . C A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:1:0.38%:153,110,0,1 0/0:.:264:263:1:0.38%:153,110,0,1 -Example1_ref 2684 . C CTG . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=6.8821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:263:2:0.75%:159,104,2,0 0/0:.:265:263:2:0.75%:159,104,2,0 -Example1_ref 2685 . T A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=6.8824E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:252:2:0.79%:150,102,2,0 0/0:.:254:252:2:0.79%:150,102,2,0 -Example1_ref 2686 . C . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:0:0%:161,109,0,0 0/0:.:271:270:0:0%:161,109,0,0 -Example1_ref 2687 . C T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:155,107,1,0 0/0:.:263:262:1:0.38%:155,107,1,0 -Example1_ref 2688 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:157,106,0,0 0/0:.:263:263:0:0%:157,106,0,0 -Example1_ref 2689 . A AC . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:150,110,1,0 0/0:.:261:260:1:0.38%:150,110,1,0 -Example1_ref 2690 . C T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:151,109,0,1 0/0:.:261:260:1:0.38%:151,109,0,1 -Example1_ref 2691 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:149,102,0,0 0/0:.:251:251:0:0%:149,102,0,0 -Example1_ref 2692 . G A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:244:1:0.41%:139,105,1,0 0/0:.:246:244:1:0.41%:139,105,1,0 -Example1_ref 2693 . C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:141,101,0,0 0/0:.:242:242:0:0%:141,101,0,0 -Example1_ref 2694 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:138,105,0,0 0/0:.:243:243:0:0%:138,105,0,0 -Example1_ref 2695 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:140,107,0,0 0/0:.:247:247:0:0%:140,107,0,0 -Example1_ref 2696 . C . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:149,101,0,0 0/0:.:250:250:0:0%:149,101,0,0 -Example1_ref 2697 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:142,101,0,0 0/0:.:243:243:0:0%:142,101,0,0 -Example1_ref 2698 . C T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:146,103,1,0 0/0:.:250:249:1:0.4%:146,103,1,0 -Example1_ref 2699 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:146,101,0,0 0/0:.:247:247:0:0%:146,101,0,0 -Example1_ref 2700 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:147,106,0,0 0/0:.:253:253:0:0%:147,106,0,0 -Example1_ref 2701 . A G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=6.8825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:250:2:0.79%:146,104,2,0 0/0:.:252:250:2:0.79%:146,104,2,0 -Example1_ref 2702 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:143,105,0,0 0/0:.:248:248:0:0%:143,105,0,0 -Example1_ref 2703 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:142,107,0,0 0/0:.:249:249:0:0%:142,107,0,0 -Example1_ref 2704 . T A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:237:1:0.42%:133,104,0,1 0/0:.:239:237:1:0.42%:133,104,0,1 -Example1_ref 2705 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:140,103,0,0 0/0:.:243:243:0:0%:140,103,0,0 -Example1_ref 2706 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:142,103,0,0 0/0:.:245:245:0:0%:142,103,0,0 -Example1_ref 2707 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:140,104,0,0 0/0:.:244:244:0:0%:140,104,0,0 -Example1_ref 2708 . C T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:143,101,1,0 0/0:.:245:244:1:0.41%:143,101,1,0 -Example1_ref 2709 . C . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:144,106,0,0 0/0:.:250:250:0:0%:144,106,0,0 -Example1_ref 2710 . A AG . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:140,107,0,1 0/0:.:248:247:1:0.4%:140,107,0,1 -Example1_ref 2711 . G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:135,108,0,0 0/0:.:244:243:0:0%:135,108,0,0 -Example1_ref 2712 . C A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:251:1:0.4%:140,111,1,0 0/0:.:253:251:1:0.4%:140,111,1,0 -Example1_ref 2713 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:141,115,0,0 0/0:.:256:256:0:0%:141,115,0,0 -Example1_ref 2714 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:144,114,0,0 0/0:.:258:258:0:0%:144,114,0,0 -Example1_ref 2715 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:136,112,0,0 0/0:.:248:248:0:0%:136,112,0,0 -Example1_ref 2716 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:136,115,0,0 0/0:.:251:251:0:0%:136,115,0,0 -Example1_ref 2717 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:136,115,0,0 0/0:.:251:251:0:0%:136,115,0,0 -Example1_ref 2718 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:139,115,0,0 0/0:.:254:254:0:0%:139,115,0,0 -Example1_ref 2719 . G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:130,114,0,0 0/0:.:244:244:0:0%:130,114,0,0 -Example1_ref 2720 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:135,112,0,0 0/0:.:247:247:0:0%:135,112,0,0 -Example1_ref 2721 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:137,113,0,0 0/0:.:250:250:0:0%:137,113,0,0 -Example1_ref 2722 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:131,106,0,0 0/0:.:237:237:0:0%:131,106,0,0 -Example1_ref 2723 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:135,109,0,0 0/0:.:244:244:0:0%:135,109,0,0 -Example1_ref 2724 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:136,112,0,0 0/0:.:248:248:0:0%:136,112,0,0 -Example1_ref 2725 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:136,112,0,0 0/0:.:248:248:0:0%:136,112,0,0 -Example1_ref 2726 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:129,103,0,0 0/0:.:232:232:0:0%:129,103,0,0 -Example1_ref 2727 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:132,114,0,0 0/0:.:246:246:0:0%:132,114,0,0 -Example1_ref 2728 . C . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:130,115,0,0 0/0:.:245:245:0:0%:130,115,0,0 -Example1_ref 2729 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:134,118,0,0 0/0:.:252:252:0:0%:134,118,0,0 -Example1_ref 2730 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:137,118,0,0 0/0:.:255:255:0:0%:137,118,0,0 -Example1_ref 2731 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:137,117,0,0 0/0:.:254:254:0:0%:137,117,0,0 -Example1_ref 2732 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:137,116,0,0 0/0:.:253:253:0:0%:137,116,0,0 -Example1_ref 2733 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:137,118,0,0 0/0:.:255:255:0:0%:137,118,0,0 -Example1_ref 2734 . A C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:139,122,1,0 0/0:.:262:261:1:0.38%:139,122,1,0 -Example1_ref 2735 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:136,123,0,0 0/0:.:259:259:0:0%:136,123,0,0 -Example1_ref 2736 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:139,123,0,0 0/0:.:262:262:0:0%:139,123,0,0 -Example1_ref 2737 . T A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:132,114,0,1 0/0:.:247:246:1:0.4%:132,114,0,1 -Example1_ref 2738 . C A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:131,128,1,0 0/0:.:260:259:1:0.38%:131,128,1,0 -Example1_ref 2739 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:0:0%:133,124,0,0 0/0:.:258:257:0:0%:133,124,0,0 -Example1_ref 2740 . G . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:133,125,0,0 0/0:.:258:258:0:0%:133,125,0,0 -Example1_ref 2741 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:136,126,0,0 0/0:.:262:262:0:0%:136,126,0,0 -Example1_ref 2742 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:139,127,0,0 0/0:.:266:266:0:0%:139,127,0,0 -Example1_ref 2743 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:135,126,0,0 0/0:.:261:261:0:0%:135,126,0,0 -Example1_ref 2744 . C . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:135,129,0,0 0/0:.:264:264:0:0%:135,129,0,0 -Example1_ref 2745 . C . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:0:0%:130,129,0,0 0/0:.:260:259:0:0%:130,129,0,0 -Example1_ref 2746 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:136,130,0,0 0/0:.:266:266:0:0%:136,130,0,0 -Example1_ref 2747 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:135,132,0,0 0/0:.:267:267:0:0%:135,132,0,0 -Example1_ref 2748 . G . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:131,133,0,0 0/0:.:264:264:0:0%:131,133,0,0 -Example1_ref 2749 . C G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=6.8823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:257:2:0.77%:127,130,2,0 0/0:.:259:257:2:0.77%:127,130,2,0 -Example1_ref 2750 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:130,132,0,0 0/0:.:262:262:0:0%:130,132,0,0 -Example1_ref 2751 . C . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:129,128,0,0 0/0:.:257:257:0:0%:129,128,0,0 -Example1_ref 2752 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:130,133,0,0 0/0:.:263:263:0:0%:130,133,0,0 -Example1_ref 2753 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:127,135,0,0 0/0:.:262:262:0:0%:127,135,0,0 -Example1_ref 2754 . G . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:120,133,0,0 0/0:.:253:253:0:0%:120,133,0,0 -Example1_ref 2755 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:125,136,0,0 0/0:.:261:261:0:0%:125,136,0,0 -Example1_ref 2756 . C A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:259:1:0.38%:126,133,1,0 0/0:.:261:259:1:0.38%:126,133,1,0 -Example1_ref 2757 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:128,134,0,0 0/0:.:262:262:0:0%:128,134,0,0 -Example1_ref 2758 . C . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:122,134,0,0 0/0:.:256:256:0:0%:122,134,0,0 -Example1_ref 2759 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:0:0%:119,132,0,0 0/0:.:252:251:0:0%:119,132,0,0 -Example1_ref 2760 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:119,134,0,0 0/0:.:253:253:0:0%:119,134,0,0 -Example1_ref 2761 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:120,133,0,0 0/0:.:253:253:0:0%:120,133,0,0 -Example1_ref 2762 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:118,138,0,0 0/0:.:256:256:0:0%:118,138,0,0 -Example1_ref 2763 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:110,137,0,0 0/0:.:247:247:0:0%:110,137,0,0 -Example1_ref 2764 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:0:0%:119,136,0,0 0/0:.:256:255:0:0%:119,136,0,0 -Example1_ref 2765 . C A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:115,130,0,1 0/0:.:246:245:1:0.41%:115,130,0,1 -Example1_ref 2766 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:119,136,0,0 0/0:.:255:255:0:0%:119,136,0,0 -Example1_ref 2767 . A G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:116,133,0,1 0/0:.:250:249:1:0.4%:116,133,0,1 -Example1_ref 2768 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:124,137,0,0 0/0:.:261:261:0:0%:124,137,0,0 -Example1_ref 2769 . T A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:115,132,1,0 0/0:.:248:247:1:0.4%:115,132,1,0 -Example1_ref 2770 . G . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:120,133,0,0 0/0:.:253:253:0:0%:120,133,0,0 -Example1_ref 2771 . G T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:112,137,1,0 0/0:.:250:249:1:0.4%:112,137,1,0 -Example1_ref 2772 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:120,137,0,0 0/0:.:257:257:0:0%:120,137,0,0 -Example1_ref 2773 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:123,138,0,0 0/0:.:261:261:0:0%:123,138,0,0 -Example1_ref 2774 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:119,137,0,0 0/0:.:256:256:0:0%:119,137,0,0 -Example1_ref 2775 . G C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:251:1:0.4%:118,133,1,0 0/0:.:253:251:1:0.4%:118,133,1,0 -Example1_ref 2776 . G . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:117,138,0,0 0/0:.:255:255:0:0%:117,138,0,0 -Example1_ref 2777 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:118,134,0,0 0/0:.:252:252:0:0%:118,134,0,0 -Example1_ref 2778 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:0:0%:109,138,0,0 0/0:.:248:247:0:0%:109,138,0,0 -Example1_ref 2779 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:114,137,0,0 0/0:.:251:251:0:0%:114,137,0,0 -Example1_ref 2780 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:114,138,0,0 0/0:.:252:252:0:0%:114,138,0,0 -Example1_ref 2781 . G . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:111,138,0,0 0/0:.:249:249:0:0%:111,138,0,0 -Example1_ref 2782 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:113,139,0,0 0/0:.:252:252:0:0%:113,139,0,0 -Example1_ref 2783 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:108,138,0,0 0/0:.:246:246:0:0%:108,138,0,0 -Example1_ref 2784 . G GCTGTCTCT . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:114,134,1,0 0/0:.:249:248:1:0.4%:114,134,1,0 -Example1_ref 2785 . G . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:111,138,0,0 0/0:.:249:249:0:0%:111,138,0,0 -Example1_ref 2786 . AT A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:259:1:0.38%:119,140,1,0 0/0:.:261:259:1:0.38%:119,140,1,0 -Example1_ref 2787 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:0:0%:118,141,0,0 0/0:.:260:259:0:0%:118,141,0,0 -Example1_ref 2788 . A T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:118,142,0,1 0/0:.:261:260:1:0.38%:118,142,0,1 -Example1_ref 2789 . C . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:119,141,0,0 0/0:.:260:260:0:0%:119,141,0,0 -Example1_ref 2790 . A G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:119,140,1,0 0/0:.:260:259:1:0.38%:119,140,1,0 -Example1_ref 2791 . G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:110,140,0,0 0/0:.:250:250:0:0%:110,140,0,0 -Example1_ref 2792 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:109,140,0,0 0/0:.:249:249:0:0%:109,140,0,0 -Example1_ref 2793 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:111,140,0,0 0/0:.:251:251:0:0%:111,140,0,0 -Example1_ref 2794 . G GCTGC . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:104,140,1,0 0/0:.:245:244:1:0.41%:104,140,1,0 -Example1_ref 2795 . A G . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:102,122,1,0 0/0:.:226:224:1:0.44%:102,122,1,0 -Example1_ref 2796 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:102,118,0,0 0/0:.:220:220:0:0%:102,118,0,0 -Example1_ref 2797 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:101,121,0,0 0/0:.:222:222:0:0%:101,121,0,0 -Example1_ref 2798 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:104,117,0,0 0/0:.:221:221:0:0%:104,117,0,0 -Example1_ref 2799 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:104,121,0,0 0/0:.:225:225:0:0%:104,121,0,0 -Example1_ref 2800 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:108,119,0,0 0/0:.:227:227:0:0%:108,119,0,0 -Example1_ref 2801 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:102,116,0,0 0/0:.:218:218:0:0%:102,116,0,0 -Example1_ref 2802 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:94,116,0,0 0/0:.:210:210:0:0%:94,116,0,0 -Example1_ref 2803 . C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:103,118,0,0 0/0:.:221:221:0:0%:103,118,0,0 -Example1_ref 2804 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:101,119,0,0 0/0:.:220:220:0:0%:101,119,0,0 -Example1_ref 2805 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:103,116,0,0 0/0:.:219:219:0:0%:103,116,0,0 -Example1_ref 2806 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:99,114,0,0 0/0:.:213:213:0:0%:99,114,0,0 -Example1_ref 2807 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:101,117,0,0 0/0:.:218:218:0:0%:101,117,0,0 -Example1_ref 2808 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:101,118,0,0 0/0:.:219:219:0:0%:101,118,0,0 -Example1_ref 2809 . A G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:103,128,1,0 0/0:.:232:231:1:0.43%:103,128,1,0 -Example1_ref 2810 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:98,126,0,0 0/0:.:224:224:0:0%:98,126,0,0 -Example1_ref 2811 . A AGCT . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:97,129,1,0 0/0:.:227:226:1:0.44%:97,129,1,0 -Example1_ref 2812 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:218:218:0:0%:91,127,0,0 -Example1_ref 2813 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:218:218:0:0%:91,127,0,0 -Example1_ref 2814 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:0:0%:90,126,0,0 0/0:.:217:216:0:0%:90,126,0,0 -Example1_ref 2815 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:0:0%:89,127,0,0 0/0:.:217:216:0:0%:89,127,0,0 -Example1_ref 2816 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:84,126,0,0 0/0:.:210:210:0:0%:84,126,0,0 -Example1_ref 2817 . G T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=6.5741E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:201:3:1.47%:80,121,2,1 0/0:.:206:201:3:1.47%:80,121,2,1 -Example1_ref 2818 . G T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:200:1:0.5%:76,124,1,0 0/0:.:202:200:1:0.5%:76,124,1,0 -Example1_ref 2819 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:0:0%:82,120,0,0 0/0:.:203:202:0:0%:82,120,0,0 -Example1_ref 2820 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:84,127,0,0 0/0:.:211:211:0:0%:84,127,0,0 -Example1_ref 2821 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:82,129,0,0 0/0:.:211:211:0:0%:82,129,0,0 -Example1_ref 2822 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:82,127,0,0 0/0:.:209:209:0:0%:82,127,0,0 -Example1_ref 2823 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:79,125,0,0 0/0:.:204:204:0:0%:79,125,0,0 -Example1_ref 2824 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:81,128,0,0 0/0:.:209:209:0:0%:81,128,0,0 -Example1_ref 2825 . C A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:82,128,1,0 0/0:.:211:210:1:0.47%:82,128,1,0 -Example1_ref 2826 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:81,120,0,0 0/0:.:201:201:0:0%:81,120,0,0 -Example1_ref 2827 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:79,125,0,0 0/0:.:204:204:0:0%:79,125,0,0 -Example1_ref 2828 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:77,123,0,0 0/0:.:200:200:0:0%:77,123,0,0 -Example1_ref 2829 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:81,126,0,0 0/0:.:207:207:0:0%:81,126,0,0 -Example1_ref 2830 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:80,123,0,0 0/0:.:203:203:0:0%:80,123,0,0 -Example1_ref 2831 . T A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:79,123,0,1 0/0:.:203:202:1:0.49%:79,123,0,1 -Example1_ref 2832 . G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:76,124,0,0 0/0:.:200:200:0:0%:76,124,0,0 -Example1_ref 2833 . C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:74,124,0,0 0/0:.:198:198:0:0%:74,124,0,0 -Example1_ref 2834 . AG A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:75,125,0,1 0/0:.:201:200:1:0.5%:75,125,0,1 -Example1_ref 2835 . G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:0:0%:67,122,0,0 0/0:.:190:189:0:0%:67,122,0,0 -Example1_ref 2836 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:68,124,0,0 0/0:.:192:192:0:0%:68,124,0,0 -Example1_ref 2837 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:68,123,0,0 0/0:.:191:191:0:0%:68,123,0,0 -Example1_ref 2838 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:67,121,0,0 0/0:.:188:188:0:0%:67,121,0,0 -Example1_ref 2839 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:67,121,0,0 0/0:.:188:188:0:0%:67,121,0,0 -Example1_ref 2840 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:64,120,0,0 0/0:.:184:184:0:0%:64,120,0,0 -Example1_ref 2841 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:67,120,0,0 0/0:.:187:187:0:0%:67,120,0,0 -Example1_ref 2842 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:65,122,0,0 0/0:.:187:187:0:0%:65,122,0,0 -Example1_ref 2843 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:66,121,0,0 0/0:.:187:187:0:0%:66,121,0,0 -Example1_ref 2844 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:69,122,0,0 0/0:.:191:191:0:0%:69,122,0,0 -Example1_ref 2845 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:67,120,0,0 0/0:.:187:187:0:0%:67,120,0,0 -Example1_ref 2846 . TA T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:66,119,1,0 0/0:.:186:185:1:0.54%:66,119,1,0 -Example1_ref 2847 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:66,119,0,0 0/0:.:185:185:0:0%:66,119,0,0 -Example1_ref 2848 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:65,118,0,0 0/0:.:183:183:0:0%:65,118,0,0 -Example1_ref 2849 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:69,115,0,0 0/0:.:184:184:0:0%:69,115,0,0 -Example1_ref 2850 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:66,118,0,0 0/0:.:184:184:0:0%:66,118,0,0 -Example1_ref 2851 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:66,117,0,0 0/0:.:183:183:0:0%:66,117,0,0 -Example1_ref 2852 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:68,115,0,0 0/0:.:183:183:0:0%:68,115,0,0 -Example1_ref 2853 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:67,115,0,0 0/0:.:182:182:0:0%:67,115,0,0 -Example1_ref 2854 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:66,111,0,0 0/0:.:177:177:0:0%:66,111,0,0 -Example1_ref 2855 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:61,114,0,0 0/0:.:175:175:0:0%:61,114,0,0 -Example1_ref 2856 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:64,111,0,0 0/0:.:175:175:0:0%:64,111,0,0 -Example1_ref 2857 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:67,112,0,0 0/0:.:179:179:0:0%:67,112,0,0 -Example1_ref 2858 . C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:67,113,0,0 0/0:.:180:180:0:0%:67,113,0,0 -Example1_ref 2859 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:67,112,0,0 0/0:.:179:179:0:0%:67,112,0,0 -Example1_ref 2860 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:65,109,0,0 0/0:.:174:174:0:0%:65,109,0,0 -Example1_ref 2861 . CA C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=6.8857E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:174:2:1.14%:63,111,0,2 0/0:.:176:174:2:1.14%:63,111,0,2 -Example1_ref 2862 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:67,111,0,0 0/0:.:178:178:0:0%:67,111,0,0 -Example1_ref 2863 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:66,111,0,0 0/0:.:177:177:0:0%:66,111,0,0 -Example1_ref 2864 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:63,112,0,0 0/0:.:175:175:0:0%:63,112,0,0 -Example1_ref 2865 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:67,113,0,0 0/0:.:180:180:0:0%:67,113,0,0 -Example1_ref 2866 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:67,113,0,0 0/0:.:180:180:0:0%:67,113,0,0 -Example1_ref 2867 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:64,112,0,0 0/0:.:176:176:0:0%:64,112,0,0 -Example1_ref 2868 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:65,114,0,0 0/0:.:179:179:0:0%:65,114,0,0 -Example1_ref 2869 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:64,115,0,0 0/0:.:179:179:0:0%:64,115,0,0 -Example1_ref 2870 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:65,116,0,0 0/0:.:181:181:0:0%:65,116,0,0 -Example1_ref 2871 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:65,116,0,0 0/0:.:181:181:0:0%:65,116,0,0 -Example1_ref 2872 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:66,113,0,0 0/0:.:179:179:0:0%:66,113,0,0 -Example1_ref 2873 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:59,113,0,0 0/0:.:172:172:0:0%:59,113,0,0 -Example1_ref 2874 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:62,116,0,0 0/0:.:178:178:0:0%:62,116,0,0 -Example1_ref 2875 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:63,116,0,0 0/0:.:179:179:0:0%:63,116,0,0 -Example1_ref 2876 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:62,117,0,0 0/0:.:179:179:0:0%:62,117,0,0 -Example1_ref 2877 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:59,114,0,0 0/0:.:173:173:0:0%:59,114,0,0 -Example1_ref 2878 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:58,114,0,0 0/0:.:172:172:0:0%:58,114,0,0 -Example1_ref 2879 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:60,116,0,0 0/0:.:176:176:0:0%:60,116,0,0 -Example1_ref 2880 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:61,117,0,0 0/0:.:178:178:0:0%:61,117,0,0 -Example1_ref 2881 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:62,116,0,0 0/0:.:178:178:0:0%:62,116,0,0 -Example1_ref 2882 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:64,116,0,0 0/0:.:180:180:0:0%:64,116,0,0 -Example1_ref 2883 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:65,114,0,0 0/0:.:179:179:0:0%:65,114,0,0 -Example1_ref 2884 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:63,113,0,0 0/0:.:176:176:0:0%:63,113,0,0 -Example1_ref 2885 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:62,112,0,0 0/0:.:174:174:0:0%:62,112,0,0 -Example1_ref 2886 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:56,110,0,0 0/0:.:166:166:0:0%:56,110,0,0 -Example1_ref 2887 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:56,110,0,0 0/0:.:166:166:0:0%:56,110,0,0 -Example1_ref 2888 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:56,113,0,0 0/0:.:169:169:0:0%:56,113,0,0 -Example1_ref 2889 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:55,112,0,0 0/0:.:167:167:0:0%:55,112,0,0 -Example1_ref 2890 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:56,111,0,0 0/0:.:167:167:0:0%:56,111,0,0 -Example1_ref 2891 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:57,113,0,0 0/0:.:170:170:0:0%:57,113,0,0 -Example1_ref 2892 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:57,110,0,0 0/0:.:167:167:0:0%:57,110,0,0 -Example1_ref 2893 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:54,110,0,0 0/0:.:164:164:0:0%:54,110,0,0 -Example1_ref 2894 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:57,109,0,0 0/0:.:166:166:0:0%:57,109,0,0 -Example1_ref 2895 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:57,109,0,0 0/0:.:166:166:0:0%:57,109,0,0 -Example1_ref 2896 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:55,110,0,0 0/0:.:165:165:0:0%:55,110,0,0 -Example1_ref 2897 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:57,110,0,0 0/0:.:167:167:0:0%:57,110,0,0 -Example1_ref 2898 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:58,104,0,0 0/0:.:162:162:0:0%:58,104,0,0 -Example1_ref 2899 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:56,103,0,0 0/0:.:159:159:0:0%:56,103,0,0 -Example1_ref 2900 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:60,103,0,0 0/0:.:163:163:0:0%:60,103,0,0 -Example1_ref 2901 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:56,101,0,0 0/0:.:157:157:0:0%:56,101,0,0 -Example1_ref 2902 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:53,99,0,0 0/0:.:152:152:0:0%:53,99,0,0 -Example1_ref 2903 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:58,100,0,0 0/0:.:158:158:0:0%:58,100,0,0 -Example1_ref 2904 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:56,102,0,0 0/0:.:158:158:0:0%:56,102,0,0 -Example1_ref 2905 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:59,101,0,0 0/0:.:160:160:0:0%:59,101,0,0 -Example1_ref 2906 . A T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:55,99,0,1 0/0:.:155:154:1:0.65%:55,99,0,1 -Example1_ref 2907 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:57,98,0,0 0/0:.:155:155:0:0%:57,98,0,0 -Example1_ref 2908 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:60,100,0,0 0/0:.:160:160:0:0%:60,100,0,0 -Example1_ref 2909 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:62,99,0,0 0/0:.:161:161:0:0%:62,99,0,0 -Example1_ref 2910 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:60,102,0,0 0/0:.:162:162:0:0%:60,102,0,0 -Example1_ref 2911 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:61,99,0,0 0/0:.:160:160:0:0%:61,99,0,0 -Example1_ref 2912 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:60,99,0,0 0/0:.:159:159:0:0%:60,99,0,0 -Example1_ref 2913 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:63,102,0,0 0/0:.:165:165:0:0%:63,102,0,0 -Example1_ref 2914 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:60,102,0,0 0/0:.:162:162:0:0%:60,102,0,0 -Example1_ref 2915 . A ATCTGTC . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:64,103,1,0 0/0:.:168:167:1:0.6%:64,103,1,0 -Example1_ref 2916 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:66,100,0,0 0/0:.:166:166:0:0%:66,100,0,0 -Example1_ref 2917 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:65,96,0,0 0/0:.:161:161:0:0%:65,96,0,0 -Example1_ref 2918 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:66,98,0,0 0/0:.:164:164:0:0%:66,98,0,0 -Example1_ref 2919 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:71,93,0,0 0/0:.:164:164:0:0%:71,93,0,0 -Example1_ref 2920 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:72,98,0,0 0/0:.:170:170:0:0%:72,98,0,0 -Example1_ref 2921 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:72,96,0,0 0/0:.:168:168:0:0%:72,96,0,0 -Example1_ref 2922 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:71,93,0,0 0/0:.:164:164:0:0%:71,93,0,0 -Example1_ref 2923 . G T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:68,92,1,0 0/0:.:161:160:1:0.62%:68,92,1,0 -Example1_ref 2924 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:69,89,0,0 0/0:.:158:158:0:0%:69,89,0,0 -Example1_ref 2925 . C A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:66,87,1,0 0/0:.:154:153:1:0.65%:66,87,1,0 -Example1_ref 2926 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:67,85,0,0 0/0:.:152:152:0:0%:67,85,0,0 -Example1_ref 2927 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:69,85,0,0 0/0:.:154:154:0:0%:69,85,0,0 -Example1_ref 2928 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:71,85,0,0 0/0:.:156:156:0:0%:71,85,0,0 -Example1_ref 2929 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:73,84,0,0 0/0:.:157:157:0:0%:73,84,0,0 -Example1_ref 2930 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:71,83,0,0 0/0:.:154:154:0:0%:71,83,0,0 -Example1_ref 2931 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:73,86,0,0 0/0:.:159:159:0:0%:73,86,0,0 -Example1_ref 2932 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:72,85,0,0 0/0:.:157:157:0:0%:72,85,0,0 -Example1_ref 2933 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:72,82,0,0 0/0:.:154:154:0:0%:72,82,0,0 -Example1_ref 2934 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:72,85,0,0 0/0:.:157:157:0:0%:72,85,0,0 -Example1_ref 2935 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:74,85,0,0 0/0:.:159:159:0:0%:74,85,0,0 -Example1_ref 2936 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:74,85,0,0 0/0:.:159:159:0:0%:74,85,0,0 -Example1_ref 2937 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:76,83,0,0 0/0:.:159:159:0:0%:76,83,0,0 -Example1_ref 2938 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:157:157:0:0%:75,82,0,0 -Example1_ref 2939 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:76,81,0,0 0/0:.:157:157:0:0%:76,81,0,0 -Example1_ref 2940 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:76,82,0,0 0/0:.:158:158:0:0%:76,82,0,0 -Example1_ref 2941 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:157:157:0:0%:75,82,0,0 -Example1_ref 2942 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:76,81,0,0 0/0:.:157:157:0:0%:76,81,0,0 -Example1_ref 2943 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:76,81,0,0 0/0:.:157:157:0:0%:76,81,0,0 -Example1_ref 2944 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:74,77,0,0 0/0:.:151:151:0:0%:74,77,0,0 -Example1_ref 2945 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:0:0%:72,76,0,0 0/0:.:149:148:0:0%:72,76,0,0 -Example1_ref 2946 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:74,75,0,0 0/0:.:149:149:0:0%:74,75,0,0 -Example1_ref 2947 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:71,78,0,0 0/0:.:149:149:0:0%:71,78,0,0 -Example1_ref 2948 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:73,79,0,0 0/0:.:152:152:0:0%:73,79,0,0 -Example1_ref 2949 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:71,78,0,0 0/0:.:149:149:0:0%:71,78,0,0 -Example1_ref 2950 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:73,77,0,0 0/0:.:150:150:0:0%:73,77,0,0 -Example1_ref 2951 . C A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:75,77,0,1 0/0:.:153:152:1:0.65%:75,77,0,1 -Example1_ref 2952 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:72,76,0,0 0/0:.:148:148:0:0%:72,76,0,0 -Example1_ref 2953 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:76,73,0,0 0/0:.:149:149:0:0%:76,73,0,0 -Example1_ref 2954 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:76,76,0,0 0/0:.:152:152:0:0%:76,76,0,0 -Example1_ref 2955 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:77,76,0,0 0/0:.:153:153:0:0%:77,76,0,0 -Example1_ref 2956 . T A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:73,72,1,0 0/0:.:146:145:1:0.68%:73,72,1,0 -Example1_ref 2957 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:76,75,0,0 0/0:.:151:151:0:0%:76,75,0,0 -Example1_ref 2958 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:77,77,0,0 0/0:.:154:154:0:0%:77,77,0,0 -Example1_ref 2959 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:78,77,0,0 0/0:.:155:155:0:0%:78,77,0,0 -Example1_ref 2960 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:80,76,0,0 0/0:.:156:156:0:0%:80,76,0,0 -Example1_ref 2961 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:75,76,0,0 0/0:.:151:151:0:0%:75,76,0,0 -Example1_ref 2962 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:79,77,0,0 0/0:.:156:156:0:0%:79,77,0,0 -Example1_ref 2963 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:79,77,0,0 0/0:.:156:156:0:0%:79,77,0,0 -Example1_ref 2964 . A T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:76,76,1,0 0/0:.:153:152:1:0.65%:76,76,1,0 -Example1_ref 2965 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:73,77,0,0 0/0:.:150:150:0:0%:73,77,0,0 -Example1_ref 2966 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:72,74,0,0 0/0:.:146:146:0:0%:72,74,0,0 -Example1_ref 2967 . G A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:77,75,0,1 0/0:.:153:152:1:0.65%:77,75,0,1 -Example1_ref 2968 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:75,72,0,0 0/0:.:147:147:0:0%:75,72,0,0 -Example1_ref 2969 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:76,68,0,0 0/0:.:144:144:0:0%:76,68,0,0 -Example1_ref 2970 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:73,71,0,0 0/0:.:144:144:0:0%:73,71,0,0 -Example1_ref 2971 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:78,70,0,0 0/0:.:148:148:0:0%:78,70,0,0 -Example1_ref 2972 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:76,71,0,0 0/0:.:147:147:0:0%:76,71,0,0 -Example1_ref 2973 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:77,72,0,0 0/0:.:149:149:0:0%:77,72,0,0 -Example1_ref 2974 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:77,71,0,0 0/0:.:148:148:0:0%:77,71,0,0 -Example1_ref 2975 . T C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:71,71,1,0 0/0:.:143:142:1:0.7%:71,71,1,0 -Example1_ref 2976 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:71,69,0,0 0/0:.:140:140:0:0%:71,69,0,0 -Example1_ref 2977 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:69,69,0,0 0/0:.:138:138:0:0%:69,69,0,0 -Example1_ref 2978 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:69,69,0,0 0/0:.:138:138:0:0%:69,69,0,0 -Example1_ref 2979 . C A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=7.5091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:70,67,0,1 0/0:.:138:137:1:0.72%:70,67,0,1 -Example1_ref 2980 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:70,69,0,0 0/0:.:139:139:0:0%:70,69,0,0 -Example1_ref 2981 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:70,68,0,0 0/0:.:139:138:0:0%:70,68,0,0 -Example1_ref 2982 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:71,68,0,0 0/0:.:140:139:0:0%:71,68,0,0 -Example1_ref 2983 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:70,69,0,0 0/0:.:139:139:0:0%:70,69,0,0 -Example1_ref 2984 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:75,72,0,0 0/0:.:147:147:0:0%:75,72,0,0 -Example1_ref 2985 . C G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:75,68,0,1 0/0:.:144:143:1:0.69%:75,68,0,1 -Example1_ref 2986 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:73,73,0,0 0/0:.:146:146:0:0%:73,73,0,0 -Example1_ref 2987 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:74,71,0,0 0/0:.:145:145:0:0%:74,71,0,0 -Example1_ref 2988 . A AG . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:75,72,0,1 0/0:.:148:147:1:0.68%:75,72,0,1 -Example1_ref 2989 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:155:155:0:0%:82,73,0,0 -Example1_ref 2990 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:91,71,0,0 0/0:.:162:162:0:0%:91,71,0,0 -Example1_ref 2991 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:97,70,0,0 0/0:.:167:167:0:0%:97,70,0,0 -Example1_ref 2992 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:96,69,0,0 0/0:.:165:165:0:0%:96,69,0,0 -Example1_ref 2993 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:99,72,0,0 0/0:.:171:171:0:0%:99,72,0,0 -Example1_ref 2994 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:168:168:0:0%:96,72,0,0 -Example1_ref 2995 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:98,74,0,0 0/0:.:172:172:0:0%:98,74,0,0 -Example1_ref 2996 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:169:169:0:0%:99,70,0,0 -Example1_ref 2997 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:98,77,0,0 0/0:.:176:175:0:0%:98,77,0,0 -Example1_ref 2998 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:99,76,0,0 0/0:.:176:175:0:0%:99,76,0,0 -Example1_ref 2999 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:99,69,0,0 0/0:.:168:168:0:0%:99,69,0,0 -Example1_ref 3000 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:99,68,0,0 0/0:.:167:167:0:0%:99,68,0,0 -Example1_ref 3001 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 3002 . T G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:99,65,0,1 0/0:.:165:164:1:0.61%:99,65,0,1 -Example1_ref 3003 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 3004 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 3005 . A AG . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:98,67,0,1 0/0:.:166:165:1:0.6%:98,67,0,1 -Example1_ref 3006 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:165:165:0:0%:97,68,0,0 -Example1_ref 3007 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 3008 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 3009 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:100,61,0,0 0/0:.:161:161:0:0%:100,61,0,0 -Example1_ref 3010 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:100,61,0,0 0/0:.:161:161:0:0%:100,61,0,0 -Example1_ref 3011 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:99,64,0,0 0/0:.:163:163:0:0%:99,64,0,0 -Example1_ref 3012 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:164:164:0:0%:99,65,0,0 -Example1_ref 3013 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:100,65,0,0 0/0:.:165:165:0:0%:100,65,0,0 -Example1_ref 3014 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:100,65,0,0 0/0:.:165:165:0:0%:100,65,0,0 -Example1_ref 3015 . G A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:100,63,1,0 0/0:.:164:163:1:0.61%:100,63,1,0 -Example1_ref 3016 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:101,64,0,0 0/0:.:165:165:0:0%:101,64,0,0 -Example1_ref 3017 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:162:162:0:0%:98,64,0,0 -Example1_ref 3018 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:100,65,0,0 0/0:.:165:165:0:0%:100,65,0,0 -Example1_ref 3019 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:162:162:0:0%:98,64,0,0 -Example1_ref 3020 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:99,62,0,0 0/0:.:161:161:0:0%:99,62,0,0 -Example1_ref 3021 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:159:159:0:0%:103,56,0,0 -Example1_ref 3022 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:102,63,0,0 0/0:.:165:165:0:0%:102,63,0,0 -Example1_ref 3023 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:101,60,0,0 0/0:.:161:161:0:0%:101,60,0,0 -Example1_ref 3024 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:103,61,0,0 0/0:.:164:164:0:0%:103,61,0,0 -Example1_ref 3025 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:104,61,0,0 0/0:.:165:165:0:0%:104,61,0,0 -Example1_ref 3026 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:107,61,0,0 0/0:.:168:168:0:0%:107,61,0,0 -Example1_ref 3027 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:103,61,0,0 0/0:.:164:164:0:0%:103,61,0,0 -Example1_ref 3028 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:105,60,0,0 0/0:.:165:165:0:0%:105,60,0,0 -Example1_ref 3029 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:105,62,0,0 0/0:.:167:167:0:0%:105,62,0,0 -Example1_ref 3030 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:170:170:0:0%:106,64,0,0 -Example1_ref 3031 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:108,63,0,0 0/0:.:171:171:0:0%:108,63,0,0 -Example1_ref 3032 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:175:175:0:0%:110,65,0,0 -Example1_ref 3033 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:170:170:0:0%:106,64,0,0 -Example1_ref 3034 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:109,62,0,0 0/0:.:171:171:0:0%:109,62,0,0 -Example1_ref 3035 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:105,65,0,0 0/0:.:170:170:0:0%:105,65,0,0 -Example1_ref 3036 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:111,65,0,0 0/0:.:176:176:0:0%:111,65,0,0 -Example1_ref 3037 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:111,66,0,0 0/0:.:177:177:0:0%:111,66,0,0 -Example1_ref 3038 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:178:178:0:0%:112,66,0,0 -Example1_ref 3039 . G T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:110,68,1,0 0/0:.:179:178:1:0.56%:110,68,1,0 -Example1_ref 3040 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:113,65,0,0 0/0:.:178:178:0:0%:113,65,0,0 -Example1_ref 3041 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:113,65,0,0 0/0:.:178:178:0:0%:113,65,0,0 -Example1_ref 3042 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:114,63,0,0 0/0:.:177:177:0:0%:114,63,0,0 -Example1_ref 3043 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:114,66,0,0 0/0:.:180:180:0:0%:114,66,0,0 -Example1_ref 3044 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:114,65,0,0 0/0:.:179:179:0:0%:114,65,0,0 -Example1_ref 3045 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:178:178:0:0%:112,66,0,0 -Example1_ref 3046 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:108,66,0,0 0/0:.:174:174:0:0%:108,66,0,0 -Example1_ref 3047 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:112,64,0,0 0/0:.:176:176:0:0%:112,64,0,0 -Example1_ref 3048 . T C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:102,64,1,0 0/0:.:167:166:1:0.6%:102,64,1,0 -Example1_ref 3049 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:108,63,0,0 0/0:.:171:171:0:0%:108,63,0,0 -Example1_ref 3050 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:112,63,0,0 0/0:.:175:175:0:0%:112,63,0,0 -Example1_ref 3051 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:114,64,0,0 0/0:.:178:178:0:0%:114,64,0,0 -Example1_ref 3052 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:116,59,0,0 0/0:.:175:175:0:0%:116,59,0,0 -Example1_ref 3053 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:111,66,0,0 0/0:.:177:177:0:0%:111,66,0,0 -Example1_ref 3054 . A AG . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:120,69,0,1 0/0:.:190:189:1:0.53%:120,69,0,1 -Example1_ref 3055 . C . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:123,68,0,0 0/0:.:191:191:0:0%:123,68,0,0 -Example1_ref 3056 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:123,71,0,0 0/0:.:194:194:0:0%:123,71,0,0 -Example1_ref 3057 . TA T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:125,71,1,0 0/0:.:197:196:1:0.51%:125,71,1,0 -Example1_ref 3058 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:123,70,0,0 0/0:.:193:193:0:0%:123,70,0,0 -Example1_ref 3059 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:123,70,0,0 0/0:.:193:193:0:0%:123,70,0,0 -Example1_ref 3060 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:125,68,0,0 0/0:.:193:193:0:0%:125,68,0,0 -Example1_ref 3061 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:124,69,0,0 0/0:.:193:193:0:0%:124,69,0,0 -Example1_ref 3062 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:126,69,0,0 0/0:.:195:195:0:0%:126,69,0,0 -Example1_ref 3063 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:123,71,0,0 0/0:.:194:194:0:0%:123,71,0,0 -Example1_ref 3064 . T C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:127,72,1,0 0/0:.:200:199:1:0.5%:127,72,1,0 -Example1_ref 3065 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:126,73,0,0 0/0:.:199:199:0:0%:126,73,0,0 -Example1_ref 3066 . G T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:124,74,1,0 0/0:.:199:198:1:0.5%:124,74,1,0 -Example1_ref 3067 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:124,74,0,0 0/0:.:198:198:0:0%:124,74,0,0 -Example1_ref 3068 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:125,73,0,0 0/0:.:198:198:0:0%:125,73,0,0 -Example1_ref 3069 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:0:0%:127,73,0,0 0/0:.:201:200:0:0%:127,73,0,0 -Example1_ref 3070 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:123,72,0,0 0/0:.:195:195:0:0%:123,72,0,0 -Example1_ref 3071 . A T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:121,74,0,1 0/0:.:196:195:1:0.51%:121,74,0,1 -Example1_ref 3072 . A T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:123,76,1,0 0/0:.:200:199:1:0.5%:123,76,1,0 -Example1_ref 3073 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:124,76,0,0 0/0:.:200:200:0:0%:124,76,0,0 -Example1_ref 3074 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:122,76,0,0 0/0:.:198:198:0:0%:122,76,0,0 -Example1_ref 3075 . T C . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:197:1:0.51%:126,71,1,0 0/0:.:201:197:1:0.51%:126,71,1,0 -Example1_ref 3076 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:124,80,0,0 0/0:.:204:204:0:0%:124,80,0,0 -Example1_ref 3077 . A C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:120,81,1,0 0/0:.:202:201:1:0.5%:120,81,1,0 -Example1_ref 3078 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:124,81,0,0 0/0:.:205:205:0:0%:124,81,0,0 -Example1_ref 3079 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:122,81,0,0 0/0:.:203:203:0:0%:122,81,0,0 -Example1_ref 3080 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:117,81,0,0 0/0:.:198:198:0:0%:117,81,0,0 -Example1_ref 3081 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:122,81,0,0 0/0:.:203:203:0:0%:122,81,0,0 -Example1_ref 3082 . G T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:128,79,1,0 0/0:.:208:207:1:0.48%:128,79,1,0 -Example1_ref 3083 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:128,83,0,0 0/0:.:211:211:0:0%:128,83,0,0 -Example1_ref 3084 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:130,85,0,0 0/0:.:215:215:0:0%:130,85,0,0 -Example1_ref 3085 . C A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:127,80,0,1 0/0:.:208:207:1:0.48%:127,80,0,1 -Example1_ref 3086 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:129,84,0,0 0/0:.:213:213:0:0%:129,84,0,0 -Example1_ref 3087 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:128,84,0,0 0/0:.:212:212:0:0%:128,84,0,0 -Example1_ref 3088 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:128,82,0,0 0/0:.:210:210:0:0%:128,82,0,0 -Example1_ref 3089 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:123,81,0,0 0/0:.:204:204:0:0%:123,81,0,0 -Example1_ref 3090 . G A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=6.8839E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:209:2:0.95%:123,86,2,0 0/0:.:211:209:2:0.95%:123,86,2,0 -Example1_ref 3091 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:132,78,0,0 0/0:.:210:210:0:0%:132,78,0,0 -Example1_ref 3092 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:126,83,0,0 0/0:.:209:209:0:0%:126,83,0,0 -Example1_ref 3093 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:132,90,0,0 0/0:.:222:222:0:0%:132,90,0,0 -Example1_ref 3094 . T G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:129,88,0,1 0/0:.:218:217:1:0.46%:129,88,0,1 -Example1_ref 3095 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:128,92,0,0 0/0:.:220:220:0:0%:128,92,0,0 -Example1_ref 3096 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:126,91,0,0 0/0:.:217:217:0:0%:126,91,0,0 -Example1_ref 3097 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:134,91,0,0 0/0:.:225:225:0:0%:134,91,0,0 -Example1_ref 3098 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:128,90,0,0 0/0:.:218:218:0:0%:128,90,0,0 -Example1_ref 3099 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:129,88,0,0 0/0:.:217:217:0:0%:129,88,0,0 -Example1_ref 3100 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:132,91,0,0 0/0:.:223:223:0:0%:132,91,0,0 -Example1_ref 3101 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:133,83,0,0 0/0:.:216:216:0:0%:133,83,0,0 -Example1_ref 3102 . G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:134,88,0,0 0/0:.:222:222:0:0%:134,88,0,0 -Example1_ref 3103 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:133,85,0,0 0/0:.:218:218:0:0%:133,85,0,0 -Example1_ref 3104 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:129,82,0,0 0/0:.:211:211:0:0%:129,82,0,0 -Example1_ref 3105 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:131,90,0,0 0/0:.:221:221:0:0%:131,90,0,0 -Example1_ref 3106 . T C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:129,87,1,0 0/0:.:217:216:1:0.46%:129,87,1,0 -Example1_ref 3107 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:128,88,0,0 0/0:.:216:216:0:0%:128,88,0,0 -Example1_ref 3108 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:0:0%:128,90,0,0 0/0:.:219:218:0:0%:128,90,0,0 -Example1_ref 3109 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:120,91,0,0 0/0:.:211:211:0:0%:120,91,0,0 -Example1_ref 3110 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:123,87,0,0 0/0:.:210:210:0:0%:123,87,0,0 -Example1_ref 3111 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:124,86,0,0 0/0:.:210:210:0:0%:124,86,0,0 -Example1_ref 3112 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:123,85,0,0 0/0:.:208:208:0:0%:123,85,0,0 -Example1_ref 3113 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:122,88,0,0 0/0:.:210:210:0:0%:122,88,0,0 -Example1_ref 3114 . A T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:123,97,1,0 0/0:.:221:220:1:0.45%:123,97,1,0 -Example1_ref 3115 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:123,98,0,0 0/0:.:221:221:0:0%:123,98,0,0 -Example1_ref 3116 . A G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:123,96,0,1 0/0:.:220:219:1:0.45%:123,96,0,1 -Example1_ref 3117 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:124,84,0,0 0/0:.:208:208:0:0%:124,84,0,0 -Example1_ref 3118 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:119,87,0,0 0/0:.:206:206:0:0%:119,87,0,0 -Example1_ref 3119 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:117,90,0,0 0/0:.:207:207:0:0%:117,90,0,0 -Example1_ref 3120 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:118,99,0,0 0/0:.:217:217:0:0%:118,99,0,0 -Example1_ref 3121 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:120,98,0,0 0/0:.:218:218:0:0%:120,98,0,0 -Example1_ref 3122 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:118,100,0,0 0/0:.:218:218:0:0%:118,100,0,0 -Example1_ref 3123 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:0:0%:123,96,0,0 0/0:.:220:219:0:0%:123,96,0,0 -Example1_ref 3124 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:0:0%:123,96,0,0 0/0:.:220:219:0:0%:123,96,0,0 -Example1_ref 3125 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:118,89,0,0 0/0:.:207:207:0:0%:118,89,0,0 -Example1_ref 3126 . C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:120,95,0,0 0/0:.:215:215:0:0%:120,95,0,0 -Example1_ref 3127 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:119,97,0,0 0/0:.:216:216:0:0%:119,97,0,0 -Example1_ref 3128 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:120,93,0,0 0/0:.:213:213:0:0%:120,93,0,0 -Example1_ref 3129 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:116,99,0,0 0/0:.:215:215:0:0%:116,99,0,0 -Example1_ref 3130 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:119,100,0,0 0/0:.:219:219:0:0%:119,100,0,0 -Example1_ref 3131 . C A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:214:1:0.47%:123,91,0,1 0/0:.:215:214:1:0.47%:123,91,0,1 -Example1_ref 3132 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:119,99,0,0 0/0:.:218:218:0:0%:119,99,0,0 -Example1_ref 3133 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:121,97,0,0 0/0:.:218:218:0:0%:121,97,0,0 -Example1_ref 3134 . A G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:119,98,0,1 0/0:.:218:217:1:0.46%:119,98,0,1 -Example1_ref 3135 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:120,101,0,0 0/0:.:221:221:0:0%:120,101,0,0 -Example1_ref 3136 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:120,101,0,0 0/0:.:221:221:0:0%:120,101,0,0 -Example1_ref 3137 . G T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:120,97,0,1 0/0:.:218:217:1:0.46%:120,97,0,1 -Example1_ref 3138 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:123,99,0,0 0/0:.:222:222:0:0%:123,99,0,0 -Example1_ref 3139 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:123,98,0,0 0/0:.:221:221:0:0%:123,98,0,0 -Example1_ref 3140 . G A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:117,98,1,0 0/0:.:216:215:1:0.46%:117,98,1,0 -Example1_ref 3141 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:121,101,0,0 0/0:.:222:222:0:0%:121,101,0,0 -Example1_ref 3142 . G T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:120,99,1,0 0/0:.:220:219:1:0.45%:120,99,1,0 -Example1_ref 3143 . G C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:118,99,1,0 0/0:.:218:217:1:0.46%:118,99,1,0 -Example1_ref 3144 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:116,102,0,0 0/0:.:218:218:0:0%:116,102,0,0 -Example1_ref 3145 . A AC . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:116,103,1,0 0/0:.:220:219:1:0.45%:116,103,1,0 -Example1_ref 3146 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:114,105,0,0 0/0:.:219:219:0:0%:114,105,0,0 -Example1_ref 3147 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:218:218:0:0%:114,104,0,0 -Example1_ref 3148 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:117,105,0,0 0/0:.:222:222:0:0%:117,105,0,0 -Example1_ref 3149 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:111,107,0,0 0/0:.:218:218:0:0%:111,107,0,0 -Example1_ref 3150 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:114,108,0,0 0/0:.:222:222:0:0%:114,108,0,0 -Example1_ref 3151 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:215:215:0:0%:111,104,0,0 -Example1_ref 3152 . A T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:115,107,0,1 0/0:.:223:222:1:0.45%:115,107,0,1 -Example1_ref 3153 . C A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=6.8839E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:210:2:0.94%:114,96,0,2 0/0:.:212:210:2:0.94%:114,96,0,2 -Example1_ref 3154 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:108,108,0,0 0/0:.:216:216:0:0%:108,108,0,0 -Example1_ref 3155 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:114,110,0,0 0/0:.:224:224:0:0%:114,110,0,0 -Example1_ref 3156 . A T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:113,109,1,0 0/0:.:223:222:1:0.45%:113,109,1,0 -Example1_ref 3157 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:116,111,0,0 0/0:.:227:227:0:0%:116,111,0,0 -Example1_ref 3158 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:115,112,0,0 0/0:.:227:227:0:0%:115,112,0,0 -Example1_ref 3159 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:115,105,0,0 0/0:.:220:220:0:0%:115,105,0,0 -Example1_ref 3160 . G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:111,112,0,0 0/0:.:223:223:0:0%:111,112,0,0 -Example1_ref 3161 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:114,113,0,0 0/0:.:227:227:0:0%:114,113,0,0 -Example1_ref 3162 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:112,114,0,0 0/0:.:226:226:0:0%:112,114,0,0 -Example1_ref 3163 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:214:214:0:0%:112,102,0,0 -Example1_ref 3164 . C A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:113,108,0,1 0/0:.:222:221:1:0.45%:113,108,0,1 -Example1_ref 3165 . C A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:215:1:0.46%:110,105,0,1 0/0:.:217:215:1:0.46%:110,105,0,1 -Example1_ref 3166 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:119,108,0,0 0/0:.:227:227:0:0%:119,108,0,0 -Example1_ref 3167 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:239:239:0:0%:120,119,0,0 -Example1_ref 3168 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:118,120,0,0 0/0:.:238:238:0:0%:118,120,0,0 -Example1_ref 3169 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:120,120,0,0 0/0:.:240:240:0:0%:120,120,0,0 -Example1_ref 3170 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:0:0%:118,119,0,0 0/0:.:238:237:0:0%:118,119,0,0 -Example1_ref 3171 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:118,119,0,0 0/0:.:237:237:0:0%:118,119,0,0 -Example1_ref 3172 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:114,118,0,0 0/0:.:232:232:0:0%:114,118,0,0 -Example1_ref 3173 . G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:118,115,0,0 0/0:.:233:233:0:0%:118,115,0,0 -Example1_ref 3174 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:118,114,0,0 0/0:.:232:232:0:0%:118,114,0,0 -Example1_ref 3175 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:231:231:0:0%:114,117,0,0 -Example1_ref 3176 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:114,111,0,0 0/0:.:225:225:0:0%:114,111,0,0 -Example1_ref 3177 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:238:238:0:0%:122,116,0,0 -Example1_ref 3178 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:116,109,0,0 0/0:.:225:225:0:0%:116,109,0,0 -Example1_ref 3179 . C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:117,110,0,0 0/0:.:227:227:0:0%:117,110,0,0 -Example1_ref 3180 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:219:219:0:0%:106,113,0,0 -Example1_ref 3181 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:111,112,0,0 0/0:.:223:223:0:0%:111,112,0,0 -Example1_ref 3182 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:109,111,0,0 0/0:.:220:220:0:0%:109,111,0,0 -Example1_ref 3183 . G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:108,114,0,0 0/0:.:222:222:0:0%:108,114,0,0 -Example1_ref 3184 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:219:219:0:0%:106,113,0,0 -Example1_ref 3185 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:103,108,0,0 0/0:.:211:211:0:0%:103,108,0,0 -Example1_ref 3186 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:103,105,0,0 0/0:.:208:208:0:0%:103,105,0,0 -Example1_ref 3187 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:105,109,0,0 0/0:.:214:214:0:0%:105,109,0,0 -Example1_ref 3188 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:108,106,0,0 0/0:.:214:214:0:0%:108,106,0,0 -Example1_ref 3189 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:108,105,0,0 0/0:.:213:213:0:0%:108,105,0,0 -Example1_ref 3190 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:107,107,0,0 0/0:.:214:214:0:0%:107,107,0,0 -Example1_ref 3191 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:107,105,0,0 0/0:.:212:212:0:0%:107,105,0,0 -Example1_ref 3192 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:109,108,0,0 0/0:.:217:217:0:0%:109,108,0,0 -Example1_ref 3193 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:105,107,0,0 0/0:.:212:212:0:0%:105,107,0,0 -Example1_ref 3194 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:106,108,0,0 0/0:.:214:214:0:0%:106,108,0,0 -Example1_ref 3195 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:106,106,0,0 0/0:.:212:212:0:0%:106,106,0,0 -Example1_ref 3196 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:106,107,0,0 0/0:.:213:213:0:0%:106,107,0,0 -Example1_ref 3197 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:106,106,0,0 0/0:.:212:212:0:0%:106,106,0,0 -Example1_ref 3198 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:103,107,0,0 0/0:.:210:210:0:0%:103,107,0,0 -Example1_ref 3199 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:105,106,0,0 0/0:.:211:211:0:0%:105,106,0,0 -Example1_ref 3200 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:103,108,0,0 0/0:.:211:211:0:0%:103,108,0,0 -Example1_ref 3201 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:211:211:0:0%:101,110,0,0 -Example1_ref 3202 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:208:208:0:0%:100,108,0,0 -Example1_ref 3203 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:0:0%:102,105,0,0 0/0:.:208:207:0:0%:102,105,0,0 -Example1_ref 3204 . G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:101,111,0,0 0/0:.:212:212:0:0%:101,111,0,0 -Example1_ref 3205 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:95,114,0,0 0/0:.:209:209:0:0%:95,114,0,0 -Example1_ref 3206 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:102,125,0,0 0/0:.:227:227:0:0%:102,125,0,0 -Example1_ref 3207 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:104,122,0,0 0/0:.:226:226:0:0%:104,122,0,0 -Example1_ref 3208 . A G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:230:1:0.43%:105,125,0,1 0/0:.:232:230:1:0.43%:105,125,0,1 -Example1_ref 3209 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:231:231:0:0%:103,128,0,0 -Example1_ref 3210 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:97,128,0,0 0/0:.:225:225:0:0%:97,128,0,0 -Example1_ref 3211 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:99,127,0,0 0/0:.:226:226:0:0%:99,127,0,0 -Example1_ref 3212 . T A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:96,116,0,1 0/0:.:213:212:1:0.47%:96,116,0,1 -Example1_ref 3213 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:94,119,0,0 0/0:.:213:213:0:0%:94,119,0,0 -Example1_ref 3214 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:96,124,0,0 0/0:.:220:220:0:0%:96,124,0,0 -Example1_ref 3215 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:98,126,0,0 0/0:.:224:224:0:0%:98,126,0,0 -Example1_ref 3216 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:94,124,0,0 0/0:.:218:218:0:0%:94,124,0,0 -Example1_ref 3217 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:96,124,0,0 0/0:.:220:220:0:0%:96,124,0,0 -Example1_ref 3218 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:96,123,0,0 0/0:.:219:219:0:0%:96,123,0,0 -Example1_ref 3219 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:95,124,0,0 0/0:.:219:219:0:0%:95,124,0,0 -Example1_ref 3220 . A C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:96,122,1,0 0/0:.:219:218:1:0.46%:96,122,1,0 -Example1_ref 3221 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:91,117,0,0 0/0:.:208:208:0:0%:91,117,0,0 -Example1_ref 3222 . C A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:86,124,1,0 0/0:.:211:210:1:0.47%:86,124,1,0 -Example1_ref 3223 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:92,123,0,0 0/0:.:215:215:0:0%:92,123,0,0 -Example1_ref 3224 . G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:92,120,0,0 0/0:.:212:212:0:0%:92,120,0,0 -Example1_ref 3225 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:85,124,0,0 0/0:.:209:209:0:0%:85,124,0,0 -Example1_ref 3226 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:89,123,0,0 0/0:.:212:212:0:0%:89,123,0,0 -Example1_ref 3227 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:88,121,0,0 0/0:.:209:209:0:0%:88,121,0,0 -Example1_ref 3228 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:89,121,0,0 0/0:.:210:210:0:0%:89,121,0,0 -Example1_ref 3229 . G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:88,124,0,0 0/0:.:212:212:0:0%:88,124,0,0 -Example1_ref 3230 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:91,125,0,0 0/0:.:216:216:0:0%:91,125,0,0 -Example1_ref 3231 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:89,117,0,0 0/0:.:206:206:0:0%:89,117,0,0 -Example1_ref 3232 . C A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=6.884E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:2:0.96%:85,122,0,2 0/0:.:209:207:2:0.96%:85,122,0,2 -Example1_ref 3233 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:87,123,0,0 0/0:.:210:210:0:0%:87,123,0,0 -Example1_ref 3234 . G . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:211:211:0:0%:89,122,0,0 -Example1_ref 3235 . C A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:92,114,0,1 0/0:.:207:206:1:0.48%:92,114,0,1 -Example1_ref 3236 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:93,120,0,0 0/0:.:213:213:0:0%:93,120,0,0 -Example1_ref 3237 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:88,123,0,0 0/0:.:211:211:0:0%:88,123,0,0 -Example1_ref 3238 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:94,127,0,0 0/0:.:221:221:0:0%:94,127,0,0 -Example1_ref 3239 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:94,125,0,0 0/0:.:219:219:0:0%:94,125,0,0 -Example1_ref 3240 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:94,126,0,0 0/0:.:220:220:0:0%:94,126,0,0 -Example1_ref 3241 . G T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:88,125,1,0 0/0:.:214:213:1:0.47%:88,125,1,0 -Example1_ref 3242 . A ACTGTCTCTT . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=6.8837E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:214:2:0.93%:88,126,2,0 0/0:.:217:214:2:0.93%:88,126,2,0 -Example1_ref 3243 . A G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:87,114,0,1 0/0:.:202:201:1:0.5%:87,114,0,1 -Example1_ref 3244 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:79,113,0,0 0/0:.:192:192:0:0%:79,113,0,0 -Example1_ref 3245 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:80,114,0,0 0/0:.:194:194:0:0%:80,114,0,0 -Example1_ref 3246 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:80,119,0,0 0/0:.:199:199:0:0%:80,119,0,0 -Example1_ref 3247 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:81,111,0,0 0/0:.:192:192:0:0%:81,111,0,0 -Example1_ref 3248 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:81,119,0,0 0/0:.:200:200:0:0%:81,119,0,0 -Example1_ref 3249 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:80,119,0,0 0/0:.:199:199:0:0%:80,119,0,0 -Example1_ref 3250 . G A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:77,117,0,1 0/0:.:195:194:1:0.51%:77,117,0,1 -Example1_ref 3251 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:74,115,0,0 0/0:.:189:189:0:0%:74,115,0,0 -Example1_ref 3252 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:74,111,0,0 0/0:.:185:185:0:0%:74,111,0,0 -Example1_ref 3253 . A T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:75,111,1,0 0/0:.:187:186:1:0.53%:75,111,1,0 -Example1_ref 3254 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:76,103,0,0 0/0:.:179:179:0:0%:76,103,0,0 -Example1_ref 3255 . C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:76,108,0,0 0/0:.:184:184:0:0%:76,108,0,0 -Example1_ref 3256 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:187:187:0:0%:77,110,0,0 -Example1_ref 3257 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:78,111,0,0 0/0:.:189:189:0:0%:78,111,0,0 -Example1_ref 3258 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:78,110,0,0 0/0:.:188:188:0:0%:78,110,0,0 -Example1_ref 3259 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:78,110,0,0 0/0:.:188:188:0:0%:78,110,0,0 -Example1_ref 3260 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:78,109,0,0 0/0:.:187:187:0:0%:78,109,0,0 -Example1_ref 3261 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:80,108,0,0 0/0:.:188:188:0:0%:80,108,0,0 -Example1_ref 3262 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:79,109,0,0 0/0:.:188:188:0:0%:79,109,0,0 -Example1_ref 3263 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:0:0%:79,109,0,0 0/0:.:189:188:0:0%:79,109,0,0 -Example1_ref 3264 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:78,104,0,0 0/0:.:182:182:0:0%:78,104,0,0 -Example1_ref 3265 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:78,104,0,0 0/0:.:182:182:0:0%:78,104,0,0 -Example1_ref 3266 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:79,102,0,0 0/0:.:181:181:0:0%:79,102,0,0 -Example1_ref 3267 . A AC . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=6.885E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:186:2:1.06%:77,109,2,0 0/0:.:188:186:2:1.06%:77,109,2,0 -Example1_ref 3268 . C A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:77,102,0,1 0/0:.:180:179:1:0.56%:77,102,0,1 -Example1_ref 3269 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:75,107,0,0 0/0:.:182:182:0:0%:75,107,0,0 -Example1_ref 3270 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:77,102,0,0 0/0:.:179:179:0:0%:77,102,0,0 -Example1_ref 3271 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:78,106,0,0 0/0:.:184:184:0:0%:78,106,0,0 -Example1_ref 3272 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:187:187:0:0%:77,110,0,0 -Example1_ref 3273 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:179:179:0:0%:80,99,0,0 -Example1_ref 3274 . C A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:79,104,0,1 0/0:.:184:183:1:0.54%:79,104,0,1 -Example1_ref 3275 . T G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:78,100,0,1 0/0:.:179:178:1:0.56%:78,100,0,1 -Example1_ref 3276 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:80,105,0,0 0/0:.:185:185:0:0%:80,105,0,0 -Example1_ref 3277 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:78,99,0,0 0/0:.:177:177:0:0%:78,99,0,0 -Example1_ref 3278 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:77,105,0,0 0/0:.:182:182:0:0%:77,105,0,0 -Example1_ref 3279 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:76,99,0,0 0/0:.:176:175:0:0%:76,99,0,0 -Example1_ref 3280 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:77,96,0,0 0/0:.:173:173:0:0%:77,96,0,0 -Example1_ref 3281 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:72,97,0,0 0/0:.:169:169:0:0%:72,97,0,0 -Example1_ref 3282 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:75,96,0,0 0/0:.:171:171:0:0%:75,96,0,0 -Example1_ref 3283 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:75,93,0,0 0/0:.:168:168:0:0%:75,93,0,0 -Example1_ref 3284 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:75,94,0,0 0/0:.:169:169:0:0%:75,94,0,0 -Example1_ref 3285 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:76,92,0,0 0/0:.:168:168:0:0%:76,92,0,0 -Example1_ref 3286 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:73,94,0,0 0/0:.:167:167:0:0%:73,94,0,0 -Example1_ref 3287 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:166:166:0:0%:73,93,0,0 -Example1_ref 3288 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:74,96,0,0 0/0:.:170:170:0:0%:74,96,0,0 -Example1_ref 3289 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:79,93,0,0 0/0:.:172:172:0:0%:79,93,0,0 -Example1_ref 3290 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:74,97,0,0 0/0:.:171:171:0:0%:74,97,0,0 -Example1_ref 3291 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:75,99,0,0 0/0:.:174:174:0:0%:75,99,0,0 -Example1_ref 3292 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:75,98,0,0 0/0:.:173:173:0:0%:75,98,0,0 -Example1_ref 3293 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:80,101,0,0 0/0:.:181:181:0:0%:80,101,0,0 -Example1_ref 3294 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:78,99,0,0 0/0:.:177:177:0:0%:78,99,0,0 -Example1_ref 3295 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:80,101,0,0 0/0:.:181:181:0:0%:80,101,0,0 -Example1_ref 3296 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:179:179:0:0%:80,99,0,0 -Example1_ref 3297 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:81,99,0,0 0/0:.:180:180:0:0%:81,99,0,0 -Example1_ref 3298 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:178:178:0:0%:81,97,0,0 -Example1_ref 3299 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:179:179:0:0%:80,99,0,0 -Example1_ref 3300 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:179:179:0:0%:80,99,0,0 -Example1_ref 3301 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:83,97,0,0 0/0:.:180:180:0:0%:83,97,0,0 -Example1_ref 3302 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:83,94,0,0 0/0:.:177:177:0:0%:83,94,0,0 -Example1_ref 3303 . GA G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=6.8858E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:173:2:1.14%:79,94,2,0 0/0:.:175:173:2:1.14%:79,94,2,0 -Example1_ref 3304 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:81,92,0,0 0/0:.:173:173:0:0%:81,92,0,0 -Example1_ref 3305 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:83,93,0,0 0/0:.:176:176:0:0%:83,93,0,0 -Example1_ref 3306 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:175:175:0:0%:84,91,0,0 -Example1_ref 3307 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:175:175:0:0%:84,91,0,0 -Example1_ref 3308 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:85,92,0,0 0/0:.:177:177:0:0%:85,92,0,0 -Example1_ref 3309 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:86,87,0,0 0/0:.:173:173:0:0%:86,87,0,0 -Example1_ref 3310 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:83,88,0,0 0/0:.:171:171:0:0%:83,88,0,0 -Example1_ref 3311 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:84,92,0,0 0/0:.:176:176:0:0%:84,92,0,0 -Example1_ref 3312 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:87,93,0,0 0/0:.:180:180:0:0%:87,93,0,0 -Example1_ref 3313 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:84,92,0,0 0/0:.:176:176:0:0%:84,92,0,0 -Example1_ref 3314 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:83,93,0,0 0/0:.:176:176:0:0%:83,93,0,0 -Example1_ref 3315 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:84,94,0,0 0/0:.:178:178:0:0%:84,94,0,0 -Example1_ref 3316 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:175:175:0:0%:84,91,0,0 -Example1_ref 3317 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:85,90,0,0 0/0:.:175:175:0:0%:85,90,0,0 -Example1_ref 3318 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:83,85,0,0 0/0:.:168:168:0:0%:83,85,0,0 -Example1_ref 3319 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:83,92,0,0 0/0:.:175:175:0:0%:83,92,0,0 -Example1_ref 3320 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:86,93,0,0 0/0:.:179:179:0:0%:86,93,0,0 -Example1_ref 3321 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:175:175:0:0%:81,94,0,0 -Example1_ref 3322 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:175:175:0:0%:84,91,0,0 -Example1_ref 3323 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:84,93,0,0 0/0:.:177:177:0:0%:84,93,0,0 -Example1_ref 3324 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:84,95,0,0 0/0:.:179:179:0:0%:84,95,0,0 -Example1_ref 3325 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:85,94,0,0 0/0:.:179:179:0:0%:85,94,0,0 -Example1_ref 3326 . A T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:82,94,1,0 0/0:.:177:176:1:0.56%:82,94,1,0 -Example1_ref 3327 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:82,96,0,0 0/0:.:178:178:0:0%:82,96,0,0 -Example1_ref 3328 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:86,99,0,0 0/0:.:185:185:0:0%:86,99,0,0 -Example1_ref 3329 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:184:184:0:0%:88,96,0,0 -Example1_ref 3330 . A ACTTC . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:87,96,1,0 0/0:.:184:183:1:0.54%:87,96,1,0 -Example1_ref 3331 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:180:180:0:0%:85,95,0,0 -Example1_ref 3332 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:84,98,0,0 0/0:.:182:182:0:0%:84,98,0,0 -Example1_ref 3333 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:87,98,0,0 0/0:.:185:185:0:0%:87,98,0,0 -Example1_ref 3334 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:184:184:0:0%:88,96,0,0 -Example1_ref 3335 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:87,98,0,0 0/0:.:185:185:0:0%:87,98,0,0 -Example1_ref 3336 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:92,96,0,0 0/0:.:188:188:0:0%:92,96,0,0 -Example1_ref 3337 . T A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:185:1:0.54%:92,93,0,1 0/0:.:187:185:1:0.54%:92,93,0,1 -Example1_ref 3338 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:181:0:0%:89,92,0,0 0/0:.:183:181:0:0%:89,92,0,0 -Example1_ref 3339 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:90,91,0,0 0/0:.:181:181:0:0%:90,91,0,0 -Example1_ref 3340 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:93,89,0,0 0/0:.:182:182:0:0%:93,89,0,0 -Example1_ref 3341 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:93,91,0,0 0/0:.:184:184:0:0%:93,91,0,0 -Example1_ref 3342 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:95,90,0,0 0/0:.:185:185:0:0%:95,90,0,0 -Example1_ref 3343 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:96,91,0,0 0/0:.:187:187:0:0%:96,91,0,0 -Example1_ref 3344 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:96,91,0,0 0/0:.:187:187:0:0%:96,91,0,0 -Example1_ref 3345 . TGAG T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:182:1:0.55%:94,88,1,0 0/0:.:184:182:1:0.55%:94,88,1,0 -Example1_ref 3346 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:91,89,0,0 0/0:.:180:180:0:0%:91,89,0,0 -Example1_ref 3347 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:94,90,0,0 0/0:.:184:184:0:0%:94,90,0,0 -Example1_ref 3348 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:93,91,0,0 0/0:.:184:184:0:0%:93,91,0,0 -Example1_ref 3349 . T A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:94,88,0,1 0/0:.:183:182:1:0.55%:94,88,0,1 -Example1_ref 3350 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:91,88,0,0 0/0:.:179:179:0:0%:91,88,0,0 -Example1_ref 3351 . AAAT A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:95,89,0,1 0/0:.:185:184:1:0.54%:95,89,0,1 -Example1_ref 3352 . A C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:183:1:0.54%:94,89,1,0 0/0:.:185:183:1:0.54%:94,89,1,0 -Example1_ref 3353 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:0:0%:93,88,0,0 0/0:.:182:181:0:0%:93,88,0,0 -Example1_ref 3354 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:0:0%:93,91,0,0 0/0:.:185:184:0:0%:93,91,0,0 -Example1_ref 3355 . G A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:88,91,1,0 0/0:.:180:179:1:0.56%:88,91,1,0 -Example1_ref 3356 . CA C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:91,86,0,1 0/0:.:178:177:1:0.56%:91,86,0,1 -Example1_ref 3357 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:90,87,0,0 0/0:.:177:177:0:0%:90,87,0,0 -Example1_ref 3358 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:89,86,0,0 0/0:.:175:175:0:0%:89,86,0,0 -Example1_ref 3359 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:88,85,0,0 0/0:.:173:173:0:0%:88,85,0,0 -Example1_ref 3360 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:87,90,0,0 0/0:.:177:177:0:0%:87,90,0,0 -Example1_ref 3361 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:86,92,0,0 0/0:.:178:178:0:0%:86,92,0,0 -Example1_ref 3362 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:89,91,0,0 0/0:.:180:180:0:0%:89,91,0,0 -Example1_ref 3363 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:89,91,0,0 0/0:.:180:180:0:0%:89,91,0,0 -Example1_ref 3364 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:90,88,0,0 0/0:.:178:178:0:0%:90,88,0,0 -Example1_ref 3365 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:89,88,0,0 0/0:.:177:177:0:0%:89,88,0,0 -Example1_ref 3366 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:88,88,0,0 0/0:.:176:176:0:0%:88,88,0,0 -Example1_ref 3367 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:86,88,0,0 0/0:.:174:174:0:0%:86,88,0,0 -Example1_ref 3368 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:80,87,0,0 0/0:.:167:167:0:0%:80,87,0,0 -Example1_ref 3369 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:81,89,0,0 0/0:.:170:170:0:0%:81,89,0,0 -Example1_ref 3370 . C A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:81,87,0,1 0/0:.:169:168:1:0.59%:81,87,0,1 -Example1_ref 3371 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:81,91,0,0 0/0:.:172:172:0:0%:81,91,0,0 -Example1_ref 3372 . C CA . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=6.886E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:170:2:1.16%:82,88,0,2 0/0:.:173:170:2:1.16%:82,88,0,2 -Example1_ref 3373 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:79,86,0,0 0/0:.:165:165:0:0%:79,86,0,0 -Example1_ref 3374 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:78,88,0,0 0/0:.:166:166:0:0%:78,88,0,0 -Example1_ref 3375 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:78,87,0,0 0/0:.:165:165:0:0%:78,87,0,0 -Example1_ref 3376 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:80,88,0,0 0/0:.:168:168:0:0%:80,88,0,0 -Example1_ref 3377 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:78,89,0,0 0/0:.:167:167:0:0%:78,89,0,0 -Example1_ref 3378 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:75,90,0,0 0/0:.:165:165:0:0%:75,90,0,0 -Example1_ref 3379 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:74,93,0,0 0/0:.:167:167:0:0%:74,93,0,0 -Example1_ref 3380 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:77,92,0,0 0/0:.:169:169:0:0%:77,92,0,0 -Example1_ref 3381 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:76,94,0,0 0/0:.:170:170:0:0%:76,94,0,0 -Example1_ref 3382 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:71,94,0,0 0/0:.:165:165:0:0%:71,94,0,0 -Example1_ref 3383 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:73,92,0,0 0/0:.:165:165:0:0%:73,92,0,0 -Example1_ref 3384 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:75,93,0,0 0/0:.:168:168:0:0%:75,93,0,0 -Example1_ref 3385 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:78,93,0,0 0/0:.:171:171:0:0%:78,93,0,0 -Example1_ref 3386 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:79,92,0,0 0/0:.:171:171:0:0%:79,92,0,0 -Example1_ref 3387 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:80,95,0,0 0/0:.:175:175:0:0%:80,95,0,0 -Example1_ref 3388 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:80,95,0,0 0/0:.:175:175:0:0%:80,95,0,0 -Example1_ref 3389 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:81,89,0,0 0/0:.:170:170:0:0%:81,89,0,0 -Example1_ref 3390 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:175:175:0:0%:81,94,0,0 -Example1_ref 3391 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:82,94,0,0 0/0:.:176:176:0:0%:82,94,0,0 -Example1_ref 3392 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:82,91,0,0 0/0:.:173:173:0:0%:82,91,0,0 -Example1_ref 3393 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:82,92,0,0 0/0:.:174:174:0:0%:82,92,0,0 -Example1_ref 3394 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:80,90,0,0 0/0:.:170:170:0:0%:80,90,0,0 -Example1_ref 3395 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:81,76,0,0 0/0:.:157:157:0:0%:81,76,0,0 -Example1_ref 3396 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:85,80,0,0 0/0:.:165:165:0:0%:85,80,0,0 -Example1_ref 3397 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:160:160:0:0%:83,77,0,0 -Example1_ref 3398 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:158:158:0:0%:85,73,0,0 -Example1_ref 3399 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:82,75,0,0 0/0:.:157:157:0:0%:82,75,0,0 -Example1_ref 3400 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:87,74,0,0 0/0:.:161:161:0:0%:87,74,0,0 -Example1_ref 3401 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:88,75,0,0 0/0:.:163:163:0:0%:88,75,0,0 -Example1_ref 3402 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:160:160:0:0%:86,74,0,0 -Example1_ref 3403 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:158:158:0:0%:85,73,0,0 -Example1_ref 3404 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:88,71,0,0 0/0:.:159:159:0:0%:88,71,0,0 -Example1_ref 3405 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:160:160:0:0%:86,74,0,0 -Example1_ref 3406 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:161:161:0:0%:85,76,0,0 -Example1_ref 3407 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:84,75,0,0 0/0:.:159:159:0:0%:84,75,0,0 -Example1_ref 3408 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:84,78,0,0 0/0:.:162:162:0:0%:84,78,0,0 -Example1_ref 3409 . G T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:84,75,1,0 0/0:.:160:159:1:0.62%:84,75,1,0 -Example1_ref 3410 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:163:163:0:0%:87,76,0,0 -Example1_ref 3411 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:88,78,0,0 0/0:.:166:166:0:0%:88,78,0,0 -Example1_ref 3412 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:89,79,0,0 0/0:.:168:168:0:0%:89,79,0,0 -Example1_ref 3413 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:160:160:0:0%:87,73,0,0 -Example1_ref 3414 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:164:164:0:0%:85,79,0,0 -Example1_ref 3415 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:88,79,0,0 0/0:.:167:167:0:0%:88,79,0,0 -Example1_ref 3416 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:88,78,0,0 0/0:.:166:166:0:0%:88,78,0,0 -Example1_ref 3417 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:163:163:0:0%:86,77,0,0 -Example1_ref 3418 . A G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:87,80,1,0 0/0:.:168:167:1:0.6%:87,80,1,0 -Example1_ref 3419 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:91,81,0,0 0/0:.:172:172:0:0%:91,81,0,0 -Example1_ref 3420 . C A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:92,81,0,1 0/0:.:174:173:1:0.57%:92,81,0,1 -Example1_ref 3421 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:93,82,0,0 0/0:.:175:175:0:0%:93,82,0,0 -Example1_ref 3422 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:172:172:0:0%:89,83,0,0 -Example1_ref 3423 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:166:166:0:0%:85,81,0,0 -Example1_ref 3424 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:86,78,0,0 0/0:.:164:164:0:0%:86,78,0,0 -Example1_ref 3425 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:172:172:0:0%:89,83,0,0 -Example1_ref 3426 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:89,80,0,0 0/0:.:169:169:0:0%:89,80,0,0 -Example1_ref 3427 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:167:167:0:0%:90,77,0,0 -Example1_ref 3428 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:87,82,0,0 0/0:.:169:169:0:0%:87,82,0,0 -Example1_ref 3429 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:164:164:0:0%:85,79,0,0 -Example1_ref 3430 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:89,81,0,0 0/0:.:170:170:0:0%:89,81,0,0 -Example1_ref 3431 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:90,83,0,0 0/0:.:173:173:0:0%:90,83,0,0 -Example1_ref 3432 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:91,85,0,0 0/0:.:176:176:0:0%:91,85,0,0 -Example1_ref 3433 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:90,82,0,0 0/0:.:172:172:0:0%:90,82,0,0 -Example1_ref 3434 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:172:172:0:0%:89,83,0,0 -Example1_ref 3435 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:0:0%:86,87,0,0 0/0:.:174:173:0:0%:86,87,0,0 -Example1_ref 3436 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:85,84,0,0 0/0:.:169:169:0:0%:85,84,0,0 -Example1_ref 3437 . G A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:87,82,0,1 0/0:.:170:169:1:0.59%:87,82,0,1 -Example1_ref 3438 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:87,83,0,0 0/0:.:170:170:0:0%:87,83,0,0 -Example1_ref 3439 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:174:174:0:0%:90,84,0,0 -Example1_ref 3440 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:87,80,0,0 0/0:.:167:167:0:0%:87,80,0,0 -Example1_ref 3441 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:171:171:0:0%:87,84,0,0 -Example1_ref 3442 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:174:174:0:0%:90,84,0,0 -Example1_ref 3443 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:171:171:0:0%:87,84,0,0 -Example1_ref 3444 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:92,84,0,0 0/0:.:176:176:0:0%:92,84,0,0 -Example1_ref 3445 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:92,83,0,0 0/0:.:175:175:0:0%:92,83,0,0 -Example1_ref 3446 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:0:0%:91,80,0,0 0/0:.:172:171:0:0%:91,80,0,0 -Example1_ref 3447 . A G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=6.1476E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:170:6:3.41%:89,81,4,2 0/0:.:176:170:6:3.41%:89,81,4,2 -Example1_ref 3448 . T A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:90,78,0,1 0/0:.:169:168:1:0.59%:90,78,0,1 -Example1_ref 3449 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:92,84,0,0 0/0:.:176:176:0:0%:92,84,0,0 -Example1_ref 3450 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:177:177:0:0%:92,85,0,0 -Example1_ref 3451 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:177:177:0:0%:92,85,0,0 -Example1_ref 3452 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:100,85,0,0 0/0:.:186:185:0:0%:100,85,0,0 -Example1_ref 3453 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:99,84,0,0 0/0:.:183:183:0:0%:99,84,0,0 -Example1_ref 3454 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:98,84,0,0 0/0:.:182:182:0:0%:98,84,0,0 -Example1_ref 3455 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:97,84,0,0 0/0:.:181:181:0:0%:97,84,0,0 -Example1_ref 3456 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:97,80,0,0 0/0:.:177:177:0:0%:97,80,0,0 -Example1_ref 3457 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:99,79,0,0 0/0:.:178:178:0:0%:99,79,0,0 -Example1_ref 3458 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:98,81,0,0 0/0:.:179:179:0:0%:98,81,0,0 -Example1_ref 3459 . C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:99,82,0,0 0/0:.:181:181:0:0%:99,82,0,0 -Example1_ref 3460 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:89,79,0,0 0/0:.:168:168:0:0%:89,79,0,0 -Example1_ref 3461 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:97,80,0,0 0/0:.:177:177:0:0%:97,80,0,0 -Example1_ref 3462 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:92,82,0,0 0/0:.:174:174:0:0%:92,82,0,0 -Example1_ref 3463 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:94,80,0,0 0/0:.:174:174:0:0%:94,80,0,0 -Example1_ref 3464 . T C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:95,78,0,1 0/0:.:174:173:1:0.57%:95,78,0,1 -Example1_ref 3465 . C A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:93,84,1,0 0/0:.:178:177:1:0.56%:93,84,1,0 -Example1_ref 3466 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:93,87,0,0 0/0:.:180:180:0:0%:93,87,0,0 -Example1_ref 3467 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:95,86,0,0 0/0:.:181:181:0:0%:95,86,0,0 -Example1_ref 3468 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:92,88,0,0 0/0:.:180:180:0:0%:92,88,0,0 -Example1_ref 3469 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:95,88,0,0 0/0:.:183:183:0:0%:95,88,0,0 -Example1_ref 3470 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:94,87,0,0 0/0:.:181:181:0:0%:94,87,0,0 -Example1_ref 3471 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:96,83,0,0 0/0:.:179:179:0:0%:96,83,0,0 -Example1_ref 3472 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:94,88,0,0 0/0:.:182:182:0:0%:94,88,0,0 -Example1_ref 3473 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:94,84,0,0 0/0:.:178:178:0:0%:94,84,0,0 -Example1_ref 3474 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:91,86,0,0 0/0:.:177:177:0:0%:91,86,0,0 -Example1_ref 3475 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:97,87,0,0 0/0:.:184:184:0:0%:97,87,0,0 -Example1_ref 3476 . AAAG A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:179:1:0.56%:91,88,1,0 0/0:.:181:179:1:0.56%:91,88,1,0 -Example1_ref 3477 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:0:0%:90,87,0,0 0/0:.:178:177:0:0%:90,87,0,0 -Example1_ref 3478 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:0:0%:94,85,0,0 0/0:.:180:179:0:0%:94,85,0,0 -Example1_ref 3479 . GT G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:173:1:0.57%:85,88,0,1 0/0:.:176:173:1:0.57%:85,88,0,1 -Example1_ref 3480 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:88,84,0,0 0/0:.:173:172:0:0%:88,84,0,0 -Example1_ref 3481 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:85,87,0,0 0/0:.:172:172:0:0%:85,87,0,0 -Example1_ref 3482 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:87,87,0,0 0/0:.:174:174:0:0%:87,87,0,0 -Example1_ref 3483 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:87,88,0,0 0/0:.:175:175:0:0%:87,88,0,0 -Example1_ref 3484 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:81,87,0,0 0/0:.:168:168:0:0%:81,87,0,0 -Example1_ref 3485 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:85,87,0,0 0/0:.:172:172:0:0%:85,87,0,0 -Example1_ref 3486 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:85,91,0,0 0/0:.:176:176:0:0%:85,91,0,0 -Example1_ref 3487 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:80,90,0,0 0/0:.:170:170:0:0%:80,90,0,0 -Example1_ref 3488 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:85,90,0,0 0/0:.:175:175:0:0%:85,90,0,0 -Example1_ref 3489 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:83,89,0,0 0/0:.:172:172:0:0%:83,89,0,0 -Example1_ref 3490 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:84,89,0,0 0/0:.:173:173:0:0%:84,89,0,0 -Example1_ref 3491 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:88,89,0,0 0/0:.:177:177:0:0%:88,89,0,0 -Example1_ref 3492 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:87,89,0,0 0/0:.:176:176:0:0%:87,89,0,0 -Example1_ref 3493 . T A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:81,87,1,0 0/0:.:169:168:1:0.59%:81,87,1,0 -Example1_ref 3494 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:84,83,0,0 0/0:.:167:167:0:0%:84,83,0,0 -Example1_ref 3495 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:84,87,0,0 0/0:.:171:171:0:0%:84,87,0,0 -Example1_ref 3496 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:85,84,0,0 0/0:.:169:169:0:0%:85,84,0,0 -Example1_ref 3497 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:84,85,0,0 0/0:.:169:169:0:0%:84,85,0,0 -Example1_ref 3498 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:86,84,0,0 0/0:.:170:170:0:0%:86,84,0,0 -Example1_ref 3499 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 3500 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:84,88,0,0 0/0:.:172:172:0:0%:84,88,0,0 -Example1_ref 3501 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:83,86,0,0 0/0:.:169:169:0:0%:83,86,0,0 -Example1_ref 3502 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:0:0%:82,87,0,0 0/0:.:170:169:0:0%:82,87,0,0 -Example1_ref 3503 . TGGA T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:79,85,1,0 0/0:.:165:164:1:0.61%:79,85,1,0 -Example1_ref 3504 . G T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:78,85,1,0 0/0:.:164:163:1:0.61%:78,85,1,0 -Example1_ref 3505 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:78,87,0,0 0/0:.:165:165:0:0%:78,87,0,0 -Example1_ref 3506 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:79,85,0,0 0/0:.:164:164:0:0%:79,85,0,0 -Example1_ref 3507 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:81,84,0,0 0/0:.:165:165:0:0%:81,84,0,0 -Example1_ref 3508 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:81,87,0,0 0/0:.:168:168:0:0%:81,87,0,0 -Example1_ref 3509 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:81,83,0,0 0/0:.:164:164:0:0%:81,83,0,0 -Example1_ref 3510 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:78,86,0,0 0/0:.:164:164:0:0%:78,86,0,0 -Example1_ref 3511 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:82,85,0,0 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 3512 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:83,82,0,0 0/0:.:165:165:0:0%:83,82,0,0 -Example1_ref 3513 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:83,81,0,0 0/0:.:164:164:0:0%:83,81,0,0 -Example1_ref 3514 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:83,85,0,0 0/0:.:168:168:0:0%:83,85,0,0 -Example1_ref 3515 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:81,84,0,0 0/0:.:165:165:0:0%:81,84,0,0 -Example1_ref 3516 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 3517 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:79,83,0,0 0/0:.:162:162:0:0%:79,83,0,0 -Example1_ref 3518 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:0:0%:78,81,0,0 0/0:.:160:159:0:0%:78,81,0,0 -Example1_ref 3519 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:0:0%:74,78,0,0 0/0:.:153:152:0:0%:74,78,0,0 -Example1_ref 3520 . G T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:75,83,1,0 0/0:.:159:158:1:0.63%:75,83,1,0 -Example1_ref 3521 . A T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:76,84,1,0 0/0:.:161:160:1:0.62%:76,84,1,0 -Example1_ref 3522 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:77,83,0,0 0/0:.:160:160:0:0%:77,83,0,0 -Example1_ref 3523 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:81,83,0,0 0/0:.:164:164:0:0%:81,83,0,0 -Example1_ref 3524 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:79,81,0,0 0/0:.:160:160:0:0%:79,81,0,0 -Example1_ref 3525 . C G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:75,80,0,1 0/0:.:156:155:1:0.64%:75,80,0,1 -Example1_ref 3526 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:76,83,0,0 0/0:.:159:159:0:0%:76,83,0,0 -Example1_ref 3527 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:76,82,0,0 0/0:.:158:158:0:0%:76,82,0,0 -Example1_ref 3528 . C A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:156:1:0.64%:73,83,1,0 0/0:.:158:156:1:0.64%:73,83,1,0 -Example1_ref 3529 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:76,82,0,0 0/0:.:158:158:0:0%:76,82,0,0 -Example1_ref 3530 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:75,83,0,0 0/0:.:158:158:0:0%:75,83,0,0 -Example1_ref 3531 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:75,80,0,0 0/0:.:155:155:0:0%:75,80,0,0 -Example1_ref 3532 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:71,79,0,0 0/0:.:150:150:0:0%:71,79,0,0 -Example1_ref 3533 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:73,77,0,0 0/0:.:150:150:0:0%:73,77,0,0 -Example1_ref 3534 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:72,79,0,0 0/0:.:151:151:0:0%:72,79,0,0 -Example1_ref 3535 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:75,78,0,0 0/0:.:153:153:0:0%:75,78,0,0 -Example1_ref 3536 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:73,79,0,0 0/0:.:152:152:0:0%:73,79,0,0 -Example1_ref 3537 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:73,80,0,0 0/0:.:153:153:0:0%:73,80,0,0 -Example1_ref 3538 . T A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:73,82,0,1 0/0:.:156:155:1:0.64%:73,82,0,1 -Example1_ref 3539 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:73,84,0,0 0/0:.:157:157:0:0%:73,84,0,0 -Example1_ref 3540 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:74,84,0,0 0/0:.:158:158:0:0%:74,84,0,0 -Example1_ref 3541 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:73,82,0,0 0/0:.:155:155:0:0%:73,82,0,0 -Example1_ref 3542 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:73,84,0,0 0/0:.:157:157:0:0%:73,84,0,0 -Example1_ref 3543 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:73,83,0,0 0/0:.:156:156:0:0%:73,83,0,0 -Example1_ref 3544 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:75,85,0,0 0/0:.:160:160:0:0%:75,85,0,0 -Example1_ref 3545 . A G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:73,84,0,1 0/0:.:158:157:1:0.63%:73,84,0,1 -Example1_ref 3546 . T C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:74,82,0,1 0/0:.:157:156:1:0.64%:74,82,0,1 -Example1_ref 3547 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:73,83,0,0 0/0:.:156:156:0:0%:73,83,0,0 -Example1_ref 3548 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:74,85,0,0 0/0:.:159:159:0:0%:74,85,0,0 -Example1_ref 3549 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:73,83,0,0 0/0:.:156:156:0:0%:73,83,0,0 -Example1_ref 3550 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:72,82,0,0 0/0:.:154:154:0:0%:72,82,0,0 -Example1_ref 3551 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:157:157:0:0%:75,82,0,0 -Example1_ref 3552 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:73,82,0,0 0/0:.:155:155:0:0%:73,82,0,0 -Example1_ref 3553 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 3554 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:155:155:0:0%:74,81,0,0 -Example1_ref 3555 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:155:155:0:0%:74,81,0,0 -Example1_ref 3556 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:157:157:0:0%:74,83,0,0 -Example1_ref 3557 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:157:157:0:0%:74,83,0,0 -Example1_ref 3558 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:157:157:0:0%:74,83,0,0 -Example1_ref 3559 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:73,81,0,0 0/0:.:154:154:0:0%:73,81,0,0 -Example1_ref 3560 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:73,79,0,0 0/0:.:152:152:0:0%:73,79,0,0 -Example1_ref 3561 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 3562 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:75,81,0,0 0/0:.:156:156:0:0%:75,81,0,0 -Example1_ref 3563 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:75,80,0,0 0/0:.:155:155:0:0%:75,80,0,0 -Example1_ref 3564 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 3565 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:75,78,0,0 0/0:.:153:153:0:0%:75,78,0,0 -Example1_ref 3566 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 3567 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:76,80,0,0 0/0:.:156:156:0:0%:76,80,0,0 -Example1_ref 3568 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 3569 . A AGCT . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:75,79,1,0 0/0:.:155:154:1:0.65%:75,79,1,0 -Example1_ref 3570 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:74,80,0,0 0/0:.:154:154:0:0%:74,80,0,0 -Example1_ref 3571 . A G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:75,78,0,1 0/0:.:154:153:1:0.65%:75,78,0,1 -Example1_ref 3572 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:75,77,0,0 0/0:.:152:152:0:0%:75,77,0,0 -Example1_ref 3573 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:155:155:0:0%:74,81,0,0 -Example1_ref 3574 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:157:157:0:0%:75,82,0,0 -Example1_ref 3575 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:73,82,0,0 0/0:.:155:155:0:0%:73,82,0,0 -Example1_ref 3576 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:157:157:0:0%:74,83,0,0 -Example1_ref 3577 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:157:157:0:0%:75,82,0,0 -Example1_ref 3578 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:157:157:0:0%:74,83,0,0 -Example1_ref 3579 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:155:155:0:0%:74,81,0,0 -Example1_ref 3580 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:157:157:0:0%:74,83,0,0 -Example1_ref 3581 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:75,84,0,0 0/0:.:159:159:0:0%:75,84,0,0 -Example1_ref 3582 . C T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:73,83,1,0 0/0:.:157:156:1:0.64%:73,83,1,0 -Example1_ref 3583 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:155:155:0:0%:74,81,0,0 -Example1_ref 3584 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:70,79,0,0 0/0:.:149:149:0:0%:70,79,0,0 -Example1_ref 3585 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:73,80,0,0 0/0:.:153:153:0:0%:73,80,0,0 -Example1_ref 3586 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:72,80,0,0 0/0:.:152:152:0:0%:72,80,0,0 -Example1_ref 3587 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:70,79,0,0 0/0:.:149:149:0:0%:70,79,0,0 -Example1_ref 3588 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:72,78,0,0 0/0:.:150:150:0:0%:72,78,0,0 -Example1_ref 3589 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:70,78,0,0 0/0:.:148:148:0:0%:70,78,0,0 -Example1_ref 3590 . CA C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:65,78,1,0 0/0:.:144:143:1:0.69%:65,78,1,0 -Example1_ref 3591 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:68,80,0,0 0/0:.:148:148:0:0%:68,80,0,0 -Example1_ref 3592 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:67,79,0,0 0/0:.:146:146:0:0%:67,79,0,0 -Example1_ref 3593 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:66,80,0,0 0/0:.:146:146:0:0%:66,80,0,0 -Example1_ref 3594 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:0:0%:67,81,0,0 0/0:.:149:148:0:0%:67,81,0,0 -Example1_ref 3595 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:67,75,0,0 0/0:.:142:142:0:0%:67,75,0,0 -Example1_ref 3596 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:65,74,0,0 0/0:.:139:139:0:0%:65,74,0,0 -Example1_ref 3597 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:68,74,0,0 0/0:.:142:142:0:0%:68,74,0,0 -Example1_ref 3598 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 3599 . T A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:67,73,0,1 0/0:.:141:140:1:0.71%:67,73,0,1 -Example1_ref 3600 . C CTCT . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:1:0.72%:64,74,1,0 0/0:.:139:138:1:0.72%:64,74,1,0 -Example1_ref 3601 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:63,78,0,0 0/0:.:141:141:0:0%:63,78,0,0 -Example1_ref 3602 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:65,79,0,0 0/0:.:144:144:0:0%:65,79,0,0 -Example1_ref 3603 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:65,79,0,0 0/0:.:144:144:0:0%:65,79,0,0 -Example1_ref 3604 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:66,79,0,0 0/0:.:145:145:0:0%:66,79,0,0 -Example1_ref 3605 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 3606 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:140:140:0:0%:62,78,0,0 -Example1_ref 3607 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:65,76,0,0 0/0:.:141:141:0:0%:65,76,0,0 -Example1_ref 3608 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:65,75,0,0 0/0:.:140:140:0:0%:65,75,0,0 -Example1_ref 3609 . T C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:61,73,0,1 0/0:.:135:134:1:0.74%:61,73,0,1 -Example1_ref 3610 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:59,76,0,0 0/0:.:135:135:0:0%:59,76,0,0 -Example1_ref 3611 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:61,72,0,0 0/0:.:133:133:0:0%:61,72,0,0 -Example1_ref 3612 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 3613 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 3614 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:61,71,0,0 0/0:.:132:132:0:0%:61,71,0,0 -Example1_ref 3615 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:55,72,0,0 0/0:.:127:127:0:0%:55,72,0,0 -Example1_ref 3616 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:57,73,0,0 0/0:.:130:130:0:0%:57,73,0,0 -Example1_ref 3617 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:57,73,0,0 0/0:.:130:130:0:0%:57,73,0,0 -Example1_ref 3618 . G GTCTGTCGCTTA . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:57,73,1,0 0/0:.:131:130:1:0.76%:57,73,1,0 -Example1_ref 3619 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:54,73,0,0 0/0:.:127:127:0:0%:54,73,0,0 -Example1_ref 3620 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:131:131:0:0%:58,73,0,0 -Example1_ref 3621 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:54,71,0,0 0/0:.:125:125:0:0%:54,71,0,0 -Example1_ref 3622 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:56,74,0,0 0/0:.:130:130:0:0%:56,74,0,0 -Example1_ref 3623 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:56,73,0,0 0/0:.:129:129:0:0%:56,73,0,0 -Example1_ref 3624 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:54,69,0,0 0/0:.:123:123:0:0%:54,69,0,0 -Example1_ref 3625 . G T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:55,70,1,0 0/0:.:126:125:1:0.79%:55,70,1,0 -Example1_ref 3626 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:57,72,0,0 0/0:.:129:129:0:0%:57,72,0,0 -Example1_ref 3627 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:59,71,0,0 0/0:.:130:130:0:0%:59,71,0,0 -Example1_ref 3628 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:131:131:0:0%:59,72,0,0 -Example1_ref 3629 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:130:1:0.76%:58,72,1,0 0/0:.:132:130:1:0.76%:58,72,1,0 -Example1_ref 3630 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:59,77,0,0 0/0:.:136:136:0:0%:59,77,0,0 -Example1_ref 3631 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:58,78,0,0 0/0:.:136:136:0:0%:58,78,0,0 -Example1_ref 3632 . T C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:59,74,0,1 0/0:.:134:133:1:0.75%:59,74,0,1 -Example1_ref 3633 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:59,78,0,0 0/0:.:137:137:0:0%:59,78,0,0 -Example1_ref 3634 . G T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:48,78,1,0 0/0:.:127:126:1:0.79%:48,78,1,0 -Example1_ref 3635 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:57,78,0,0 0/0:.:135:135:0:0%:57,78,0,0 -Example1_ref 3636 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:128:128:0:0%:52,76,0,0 -Example1_ref 3637 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:128:128:0:0%:53,75,0,0 -Example1_ref 3638 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:51,74,0,0 0/0:.:125:125:0:0%:51,74,0,0 -Example1_ref 3639 . C A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:50,69,0,1 0/0:.:120:119:1:0.83%:50,69,0,1 -Example1_ref 3640 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:54,77,0,0 0/0:.:131:131:0:0%:54,77,0,0 -Example1_ref 3641 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:54,77,0,0 0/0:.:131:131:0:0%:54,77,0,0 -Example1_ref 3642 . T C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.5098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:50,77,1,0 0/0:.:128:127:1:0.78%:50,77,1,0 -Example1_ref 3643 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:49,75,0,0 0/0:.:124:124:0:0%:49,75,0,0 -Example1_ref 3644 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:51,75,0,0 0/0:.:126:126:0:0%:51,75,0,0 -Example1_ref 3645 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:51,75,0,0 0/0:.:126:126:0:0%:51,75,0,0 -Example1_ref 3646 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:52,75,0,0 0/0:.:127:127:0:0%:52,75,0,0 -Example1_ref 3647 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:128:128:0:0%:52,76,0,0 -Example1_ref 3648 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:48,76,0,0 0/0:.:124:124:0:0%:48,76,0,0 -Example1_ref 3649 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:128:128:0:0%:53,75,0,0 -Example1_ref 3650 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:53,72,0,0 0/0:.:125:125:0:0%:53,72,0,0 -Example1_ref 3651 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:53,68,0,0 0/0:.:121:121:0:0%:53,68,0,0 -Example1_ref 3652 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:54,68,0,0 0/0:.:122:122:0:0%:54,68,0,0 -Example1_ref 3653 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:53,67,0,0 0/0:.:120:120:0:0%:53,67,0,0 -Example1_ref 3654 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:55,64,0,0 0/0:.:119:119:0:0%:55,64,0,0 -Example1_ref 3655 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:54,65,0,0 0/0:.:119:119:0:0%:54,65,0,0 -Example1_ref 3656 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:56,63,0,0 0/0:.:119:119:0:0%:56,63,0,0 -Example1_ref 3657 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:55,62,0,0 0/0:.:117:117:0:0%:55,62,0,0 -Example1_ref 3658 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:56,64,0,0 0/0:.:120:120:0:0%:56,64,0,0 -Example1_ref 3659 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:55,62,0,0 0/0:.:117:117:0:0%:55,62,0,0 -Example1_ref 3660 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:54,61,0,0 0/0:.:115:115:0:0%:54,61,0,0 -Example1_ref 3661 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:114:114:0:0%:52,62,0,0 -Example1_ref 3662 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:54,62,0,0 0/0:.:116:116:0:0%:54,62,0,0 -Example1_ref 3663 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:52,63,0,0 0/0:.:115:115:0:0%:52,63,0,0 -Example1_ref 3664 . T A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=7.5111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:53,59,0,1 0/0:.:113:112:1:0.88%:53,59,0,1 -Example1_ref 3665 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:115:115:0:0%:53,62,0,0 -Example1_ref 3666 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:115:115:0:0%:53,62,0,0 -Example1_ref 3667 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:49,61,0,0 0/0:.:110:110:0:0%:49,61,0,0 -Example1_ref 3668 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:48,62,0,0 0/0:.:110:110:0:0%:48,62,0,0 -Example1_ref 3669 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:49,63,0,0 0/0:.:112:112:0:0%:49,63,0,0 -Example1_ref 3670 . T G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:49,61,1,0 0/0:.:111:110:1:0.9%:49,61,1,0 -Example1_ref 3671 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:48,61,0,0 0/0:.:109:109:0:0%:48,61,0,0 -Example1_ref 3672 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:49,62,0,0 0/0:.:111:111:0:0%:49,62,0,0 -Example1_ref 3673 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:50,62,0,0 0/0:.:112:112:0:0%:50,62,0,0 -Example1_ref 3674 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:108:108:0:0%:48,60,0,0 -Example1_ref 3675 . G GCTGT . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.5112E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:49,62,1,0 0/0:.:112:111:1:0.89%:49,62,1,0 -Example1_ref 3676 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:50,60,0,0 0/0:.:110:110:0:0%:50,60,0,0 -Example1_ref 3677 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:49,60,0,0 0/0:.:109:109:0:0%:49,60,0,0 -Example1_ref 3678 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:47,58,0,0 0/0:.:105:105:0:0%:47,58,0,0 -Example1_ref 3679 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:51,59,0,0 0/0:.:110:110:0:0%:51,59,0,0 -Example1_ref 3680 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 3681 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:50,60,0,0 0/0:.:110:110:0:0%:50,60,0,0 -Example1_ref 3682 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:51,60,0,0 0/0:.:111:111:0:0%:51,60,0,0 -Example1_ref 3683 . T A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.5112E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:50,61,1,0 0/0:.:112:111:1:0.89%:50,61,1,0 -Example1_ref 3684 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:50,58,0,0 0/0:.:108:108:0:0%:50,58,0,0 -Example1_ref 3685 . A C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=7.5118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:49,56,0,1 0/0:.:106:105:1:0.94%:49,56,0,1 -Example1_ref 3686 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:105:105:0:0%:49,56,0,0 -Example1_ref 3687 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 3688 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:104:104:0:0%:49,55,0,0 -Example1_ref 3689 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 3690 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:50,56,0,0 0/0:.:106:106:0:0%:50,56,0,0 -Example1_ref 3691 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:105:105:0:0%:49,56,0,0 -Example1_ref 3692 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:105:105:0:0%:50,55,0,0 -Example1_ref 3693 . C A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=7.5118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:105:1:0.94%:50,55,0,1 0/0:.:107:105:1:0.94%:50,55,0,1 -Example1_ref 3694 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:46,56,0,0 0/0:.:102:102:0:0%:46,56,0,0 -Example1_ref 3695 . A G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=7.5118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:50,55,0,1 0/0:.:106:105:1:0.94%:50,55,0,1 -Example1_ref 3696 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:105:105:0:0%:48,57,0,0 -Example1_ref 3697 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:104:104:0:0%:49,55,0,0 -Example1_ref 3698 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 3699 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:105:105:0:0%:48,57,0,0 -Example1_ref 3700 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:104:104:0:0%:49,55,0,0 -Example1_ref 3701 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:105:105:0:0%:51,54,0,0 -Example1_ref 3702 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:104:104:0:0%:50,54,0,0 -Example1_ref 3703 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:51,50,0,0 0/0:.:101:101:0:0%:51,50,0,0 -Example1_ref 3704 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 3705 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 3706 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:108:108:0:0%:54,54,0,0 -Example1_ref 3707 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:56,55,0,0 0/0:.:111:111:0:0%:56,55,0,0 -Example1_ref 3708 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:56,54,0,0 0/0:.:110:110:0:0%:56,54,0,0 -Example1_ref 3709 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:54,52,0,0 0/0:.:106:106:0:0%:54,52,0,0 -Example1_ref 3710 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:108:108:0:0%:54,54,0,0 -Example1_ref 3711 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:0:0%:55,52,0,0 0/0:.:108:107:0:0%:55,52,0,0 -Example1_ref 3712 . C A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:55,53,0,1 0/0:.:109:108:1:0.92%:55,53,0,1 -Example1_ref 3713 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:55,52,0,0 0/0:.:107:107:0:0%:55,52,0,0 -Example1_ref 3714 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:55,53,0,0 0/0:.:108:108:0:0%:55,53,0,0 -Example1_ref 3715 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:55,54,0,0 0/0:.:109:109:0:0%:55,54,0,0 -Example1_ref 3716 . A T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.5109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:58,56,1,0 0/0:.:115:114:1:0.87%:58,56,1,0 -Example1_ref 3717 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:60,52,0,0 0/0:.:112:112:0:0%:60,52,0,0 -Example1_ref 3718 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:60,56,0,0 0/0:.:116:116:0:0%:60,56,0,0 -Example1_ref 3719 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 3720 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:62,53,0,0 0/0:.:115:115:0:0%:62,53,0,0 -Example1_ref 3721 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:115:115:0:0%:63,52,0,0 -Example1_ref 3722 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:115:115:0:0%:63,52,0,0 -Example1_ref 3723 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:114:114:0:0%:63,51,0,0 -Example1_ref 3724 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:62,51,0,0 0/0:.:113:113:0:0%:62,51,0,0 -Example1_ref 3725 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:114:114:0:0%:63,51,0,0 -Example1_ref 3726 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:114:114:0:0%:63,51,0,0 -Example1_ref 3727 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:61,45,0,0 0/0:.:106:106:0:0%:61,45,0,0 -Example1_ref 3728 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:62,42,0,0 0/0:.:104:104:0:0%:62,42,0,0 -Example1_ref 3729 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:62,44,0,0 0/0:.:106:106:0:0%:62,44,0,0 -Example1_ref 3730 . C A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=6.8934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:101:2:1.94%:58,43,0,2 0/0:.:103:101:2:1.94%:58,43,0,2 -Example1_ref 3731 . C T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.5128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:55,42,1,0 0/0:.:98:97:1:1.02%:55,42,1,0 -Example1_ref 3732 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 3733 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:58,42,0,0 0/0:.:100:100:0:0%:58,42,0,0 -Example1_ref 3734 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 3735 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 3736 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:56,43,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 3737 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:57,41,0,0 0/0:.:98:98:0:0%:57,41,0,0 -Example1_ref 3738 . C G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=7.513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:56,40,1,0 0/0:.:97:96:1:1.03%:56,40,1,0 -Example1_ref 3739 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 3740 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:55,44,0,0 0/0:.:99:99:0:0%:55,44,0,0 -Example1_ref 3741 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 3742 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:52,45,0,0 0/0:.:97:97:0:0%:52,45,0,0 -Example1_ref 3743 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 3744 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 3745 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:55,45,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 3746 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 3747 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 3748 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:55,47,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 3749 . G T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.5124E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:1:0.99%:53,47,1,0 0/0:.:101:100:1:0.99%:53,47,1,0 -Example1_ref 3750 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:55,48,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 3751 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:0:0%:49,48,0,0 0/0:.:98:97:0:0%:49,48,0,0 -Example1_ref 3752 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:53,48,0,0 0/0:.:102:101:0:0%:53,48,0,0 -Example1_ref 3753 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:0:0%:54,48,0,0 0/0:.:103:102:0:0%:54,48,0,0 -Example1_ref 3754 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:54,47,0,0 0/0:.:102:101:0:0%:54,47,0,0 -Example1_ref 3755 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:56,47,0,0 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 3756 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 3757 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:116:116:0:0%:67,49,0,0 -Example1_ref 3758 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:115:115:0:0%:67,48,0,0 -Example1_ref 3759 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:68,49,0,0 0/0:.:117:117:0:0%:68,49,0,0 -Example1_ref 3760 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:119:119:0:0%:71,48,0,0 -Example1_ref 3761 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:118:118:0:0%:69,49,0,0 -Example1_ref 3762 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:118:118:0:0%:69,49,0,0 -Example1_ref 3763 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:68,46,0,0 0/0:.:114:114:0:0%:68,46,0,0 -Example1_ref 3764 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 3765 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:71,47,0,0 0/0:.:118:118:0:0%:71,47,0,0 -Example1_ref 3766 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:120:120:0:0%:73,47,0,0 -Example1_ref 3767 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:117:117:0:0%:73,44,0,0 -Example1_ref 3768 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:71,49,0,0 0/0:.:120:120:0:0%:71,49,0,0 -Example1_ref 3769 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:121:121:0:0%:72,49,0,0 -Example1_ref 3770 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:72,47,0,0 0/0:.:119:119:0:0%:72,47,0,0 -Example1_ref 3771 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:71,47,0,0 0/0:.:118:118:0:0%:71,47,0,0 -Example1_ref 3772 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:120:120:0:0%:72,48,0,0 -Example1_ref 3773 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:70,43,0,0 0/0:.:113:113:0:0%:70,43,0,0 -Example1_ref 3774 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:72,44,0,0 0/0:.:116:116:0:0%:72,44,0,0 -Example1_ref 3775 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:72,42,0,0 0/0:.:114:114:0:0%:72,42,0,0 -Example1_ref 3776 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:72,43,0,0 0/0:.:115:115:0:0%:72,43,0,0 -Example1_ref 3777 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:72,43,0,0 0/0:.:115:115:0:0%:72,43,0,0 -Example1_ref 3778 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:0:0%:72,41,0,0 0/0:.:114:113:0:0%:72,41,0,0 -Example1_ref 3779 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:73,46,0,0 0/0:.:119:119:0:0%:73,46,0,0 -Example1_ref 3780 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 3781 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:72,47,0,0 0/0:.:119:119:0:0%:72,47,0,0 -Example1_ref 3782 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:70,46,0,0 0/0:.:116:116:0:0%:70,46,0,0 -Example1_ref 3783 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:118:118:0:0%:73,45,0,0 -Example1_ref 3784 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:73,42,0,0 0/0:.:115:115:0:0%:73,42,0,0 -Example1_ref 3785 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:119:119:0:0%:70,49,0,0 -Example1_ref 3786 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:121:121:0:0%:72,49,0,0 -Example1_ref 3787 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:122:122:0:0%:73,49,0,0 -Example1_ref 3788 . G GTAT . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:74,51,0,1 0/0:.:126:125:1:0.79%:74,51,0,1 -Example1_ref 3789 . A AG . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=7.5101E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:1:0.81%:73,50,0,1 0/0:.:124:123:1:0.81%:73,50,0,1 -Example1_ref 3790 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:125:125:0:0%:73,52,0,0 -Example1_ref 3791 . C A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:75,50,0,1 0/0:.:126:125:1:0.79%:75,50,0,1 -Example1_ref 3792 . A AG . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:73,51,0,1 0/0:.:125:124:1:0.8%:73,51,0,1 -Example1_ref 3793 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:130:130:0:0%:79,51,0,0 -Example1_ref 3794 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:79,50,0,0 0/0:.:129:129:0:0%:79,50,0,0 -Example1_ref 3795 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:130:130:0:0%:78,52,0,0 -Example1_ref 3796 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:130:130:0:0%:79,51,0,0 -Example1_ref 3797 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 3798 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:82,53,0,0 0/0:.:135:135:0:0%:82,53,0,0 -Example1_ref 3799 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:82,53,0,0 0/0:.:135:135:0:0%:82,53,0,0 -Example1_ref 3800 . G T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:132:1:0.75%:78,54,1,0 0/0:.:134:132:1:0.75%:78,54,1,0 -Example1_ref 3801 . CA C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:138:1:0.72%:84,54,0,1 0/0:.:140:138:1:0.72%:84,54,0,1 -Example1_ref 3802 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:136:0:0%:84,52,0,0 0/0:.:138:136:0:0%:84,52,0,0 -Example1_ref 3803 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:81,52,0,0 0/0:.:134:133:0:0%:81,52,0,0 -Example1_ref 3804 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:0:0%:83,52,0,0 0/0:.:136:135:0:0%:83,52,0,0 -Example1_ref 3805 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:0:0%:84,59,0,0 0/0:.:144:143:0:0%:84,59,0,0 -Example1_ref 3806 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:0:0%:82,58,0,0 0/0:.:141:140:0:0%:82,58,0,0 -Example1_ref 3807 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:0:0%:80,56,0,0 0/0:.:137:136:0:0%:80,56,0,0 -Example1_ref 3808 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:79,59,0,0 0/0:.:139:138:0:0%:79,59,0,0 -Example1_ref 3809 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:0:0%:82,55,0,0 0/0:.:138:137:0:0%:82,55,0,0 -Example1_ref 3810 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:85,60,0,0 0/0:.:145:145:0:0%:85,60,0,0 -Example1_ref 3811 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:85,60,0,0 0/0:.:145:145:0:0%:85,60,0,0 -Example1_ref 3812 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:84,57,0,0 0/0:.:141:141:0:0%:84,57,0,0 -Example1_ref 3813 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:84,59,0,0 0/0:.:143:143:0:0%:84,59,0,0 -Example1_ref 3814 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:83,58,0,0 0/0:.:141:141:0:0%:83,58,0,0 -Example1_ref 3815 . A C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:82,57,1,0 0/0:.:140:139:1:0.71%:82,57,1,0 -Example1_ref 3816 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:134:134:0:0%:77,57,0,0 -Example1_ref 3817 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:82,58,0,0 0/0:.:140:140:0:0%:82,58,0,0 -Example1_ref 3818 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:79,58,0,0 0/0:.:137:137:0:0%:79,58,0,0 -Example1_ref 3819 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:81,51,0,0 0/0:.:132:132:0:0%:81,51,0,0 -Example1_ref 3820 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:79,51,0,0 0/0:.:131:130:0:0%:79,51,0,0 -Example1_ref 3821 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:127:127:0:0%:77,50,0,0 -Example1_ref 3822 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:130:130:0:0%:78,52,0,0 -Example1_ref 3823 . C A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:78,51,0,1 0/0:.:130:129:1:0.77%:78,51,0,1 -Example1_ref 3824 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:79,56,0,0 0/0:.:135:135:0:0%:79,56,0,0 -Example1_ref 3825 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:131:131:0:0%:76,55,0,0 -Example1_ref 3826 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 3827 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:80,54,0,0 0/0:.:134:134:0:0%:80,54,0,0 -Example1_ref 3828 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 3829 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:130:130:0:0%:77,53,0,0 -Example1_ref 3830 . G T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:76,55,1,0 0/0:.:132:131:1:0.76%:76,55,1,0 -Example1_ref 3831 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 3832 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:131:131:0:0%:75,56,0,0 -Example1_ref 3833 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:76,58,0,0 0/0:.:134:134:0:0%:76,58,0,0 -Example1_ref 3834 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:77,58,0,0 0/0:.:135:135:0:0%:77,58,0,0 -Example1_ref 3835 . T C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:76,54,0,1 0/0:.:131:130:1:0.76%:76,54,0,1 -Example1_ref 3836 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:75,56,0,1 0/0:.:132:131:1:0.76%:75,56,0,1 -Example1_ref 3837 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:132:132:0:0%:74,58,0,0 -Example1_ref 3838 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:76,60,0,0 0/0:.:136:136:0:0%:76,60,0,0 -Example1_ref 3839 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:135:135:0:0%:76,59,0,0 -Example1_ref 3840 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:72,58,0,0 0/0:.:130:130:0:0%:72,58,0,0 -Example1_ref 3841 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 3842 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 3843 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:129:129:0:0%:72,57,0,0 -Example1_ref 3844 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:128:128:0:0%:71,57,0,0 -Example1_ref 3845 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:127:127:0:0%:73,54,0,0 -Example1_ref 3846 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:134:134:0:0%:75,59,0,0 -Example1_ref 3847 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:131:131:0:0%:75,56,0,0 -Example1_ref 3848 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:129:129:0:0%:72,57,0,0 -Example1_ref 3849 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 3850 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 3851 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:74,56,0,0 0/0:.:131:130:0:0%:74,56,0,0 -Example1_ref 3852 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:126:126:0:0%:73,53,0,0 -Example1_ref 3853 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:126:126:0:0%:73,53,0,0 -Example1_ref 3854 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:131:131:0:0%:76,55,0,0 -Example1_ref 3855 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:132:132:0:0%:74,58,0,0 -Example1_ref 3856 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:135:135:0:0%:76,59,0,0 -Example1_ref 3857 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:138:138:0:0%:75,63,0,0 -Example1_ref 3858 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:77,60,0,0 0/0:.:137:137:0:0%:77,60,0,0 -Example1_ref 3859 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:135:135:0:0%:76,59,0,0 -Example1_ref 3860 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:133:133:0:0%:76,57,0,0 -Example1_ref 3861 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:75,60,0,0 0/0:.:135:135:0:0%:75,60,0,0 -Example1_ref 3862 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:77,58,0,0 0/0:.:135:135:0:0%:77,58,0,0 -Example1_ref 3863 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:78,59,0,0 0/0:.:137:137:0:0%:78,59,0,0 -Example1_ref 3864 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:78,59,0,0 0/0:.:137:137:0:0%:78,59,0,0 -Example1_ref 3865 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:78,56,0,0 0/0:.:134:134:0:0%:78,56,0,0 -Example1_ref 3866 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:76,58,0,0 0/0:.:134:134:0:0%:76,58,0,0 -Example1_ref 3867 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:76,55,0,0 0/0:.:132:131:0:0%:76,55,0,0 -Example1_ref 3868 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:134:134:0:0%:77,57,0,0 -Example1_ref 3869 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:75,58,0,0 0/0:.:133:133:0:0%:75,58,0,0 -Example1_ref 3870 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 3871 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:131:131:0:0%:73,58,0,0 -Example1_ref 3872 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:134:134:0:0%:75,59,0,0 -Example1_ref 3873 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 3874 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:131:131:0:0%:73,58,0,0 -Example1_ref 3875 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 3876 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:72,58,0,0 0/0:.:130:130:0:0%:72,58,0,0 -Example1_ref 3877 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 3878 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:133:133:0:0%:74,59,0,0 -Example1_ref 3879 . G T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:71,58,1,0 0/0:.:130:129:1:0.77%:71,58,1,0 -Example1_ref 3880 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:133:133:0:0%:76,57,0,0 -Example1_ref 3881 . T G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:74,59,1,0 0/0:.:134:133:1:0.75%:74,59,1,0 -Example1_ref 3882 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:134:134:0:0%:75,59,0,0 -Example1_ref 3883 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 3884 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:130:130:0:0%:73,57,0,0 -Example1_ref 3885 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:134:134:0:0%:75,59,0,0 -Example1_ref 3886 . C T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=6.8891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:132:2:1.49%:72,60,1,1 0/0:.:134:132:2:1.49%:72,60,1,1 -Example1_ref 3887 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:75,60,0,0 0/0:.:135:135:0:0%:75,60,0,0 -Example1_ref 3888 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:72,61,0,0 0/0:.:133:133:0:0%:72,61,0,0 -Example1_ref 3889 . G A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.5098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:69,58,0,1 0/0:.:128:127:1:0.78%:69,58,0,1 -Example1_ref 3890 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:133:133:0:0%:71,62,0,0 -Example1_ref 3891 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:72,60,0,0 0/0:.:132:132:0:0%:72,60,0,0 -Example1_ref 3892 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:70,59,0,0 0/0:.:129:129:0:0%:70,59,0,0 -Example1_ref 3893 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:68,60,0,0 0/0:.:128:128:0:0%:68,60,0,0 -Example1_ref 3894 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:69,59,0,0 0/0:.:128:128:0:0%:69,59,0,0 -Example1_ref 3895 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:68,60,0,0 0/0:.:128:128:0:0%:68,60,0,0 -Example1_ref 3896 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:67,59,0,0 0/0:.:126:126:0:0%:67,59,0,0 -Example1_ref 3897 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 3898 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:122:122:0:0%:64,58,0,0 -Example1_ref 3899 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:65,61,0,0 0/0:.:126:126:0:0%:65,61,0,0 -Example1_ref 3900 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:66,61,0,0 0/0:.:127:127:0:0%:66,61,0,0 -Example1_ref 3901 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:124:124:0:0%:65,59,0,0 -Example1_ref 3902 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:64,61,0,0 0/0:.:125:125:0:0%:64,61,0,0 -Example1_ref 3903 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:66,61,0,0 0/0:.:127:127:0:0%:66,61,0,0 -Example1_ref 3904 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:62,62,0,0 0/0:.:124:124:0:0%:62,62,0,0 -Example1_ref 3905 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:125:125:0:0%:62,63,0,0 -Example1_ref 3906 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:61,59,0,0 0/0:.:120:120:0:0%:61,59,0,0 -Example1_ref 3907 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:64,61,0,0 0/0:.:125:125:0:0%:64,61,0,0 -Example1_ref 3908 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:66,62,0,0 0/0:.:128:128:0:0%:66,62,0,0 -Example1_ref 3909 . A C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:125:1:0.79%:60,65,1,0 0/0:.:127:125:1:0.79%:60,65,1,0 -Example1_ref 3910 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:63,63,0,0 0/0:.:126:126:0:0%:63,63,0,0 -Example1_ref 3911 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:129:129:0:0%:63,66,0,0 -Example1_ref 3912 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:63,64,0,0 0/0:.:127:127:0:0%:63,64,0,0 -Example1_ref 3913 . C A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:127:1:0.78%:62,65,1,0 0/0:.:129:127:1:0.78%:62,65,1,0 -Example1_ref 3914 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:61,64,0,0 0/0:.:125:125:0:0%:61,64,0,0 -Example1_ref 3915 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:59,67,0,0 0/0:.:126:126:0:0%:59,67,0,0 -Example1_ref 3916 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:62,67,0,0 0/0:.:129:129:0:0%:62,67,0,0 -Example1_ref 3917 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:59,66,0,0 0/0:.:125:125:0:0%:59,66,0,0 -Example1_ref 3918 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:60,66,0,0 0/0:.:126:126:0:0%:60,66,0,0 -Example1_ref 3919 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:62,66,0,0 0/0:.:128:128:0:0%:62,66,0,0 -Example1_ref 3920 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:64,66,0,0 0/0:.:130:130:0:0%:64,66,0,0 -Example1_ref 3921 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:63,63,0,0 0/0:.:126:126:0:0%:63,63,0,0 -Example1_ref 3922 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:64,65,0,0 0/0:.:129:129:0:0%:64,65,0,0 -Example1_ref 3923 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:129:129:0:0%:63,66,0,0 -Example1_ref 3924 . A T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:59,67,1,0 0/0:.:127:126:1:0.79%:59,67,1,0 -Example1_ref 3925 . T G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:60,66,0,1 0/0:.:127:126:1:0.79%:60,66,0,1 -Example1_ref 3926 . G A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:65,67,0,1 0/0:.:133:132:1:0.75%:65,67,0,1 -Example1_ref 3927 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:66,67,0,0 0/0:.:133:133:0:0%:66,67,0,0 -Example1_ref 3928 . T A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:79,65,0,1 0/0:.:145:144:1:0.69%:79,65,0,1 -Example1_ref 3929 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:79,65,0,0 0/0:.:144:144:0:0%:79,65,0,0 -Example1_ref 3930 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:81,64,0,0 0/0:.:145:145:0:0%:81,64,0,0 -Example1_ref 3931 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:79,62,0,0 0/0:.:141:141:0:0%:79,62,0,0 -Example1_ref 3932 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:79,66,0,0 0/0:.:145:145:0:0%:79,66,0,0 -Example1_ref 3933 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:81,64,0,0 0/0:.:145:145:0:0%:81,64,0,0 -Example1_ref 3934 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:80,65,0,0 0/0:.:145:145:0:0%:80,65,0,0 -Example1_ref 3935 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:81,63,0,0 0/0:.:144:144:0:0%:81,63,0,0 -Example1_ref 3936 . G GCTGTCTCT . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:80,62,1,0 0/0:.:143:142:1:0.7%:80,62,1,0 -Example1_ref 3937 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:80,61,0,0 0/0:.:141:141:0:0%:80,61,0,0 -Example1_ref 3938 . G T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=6.8886E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:137:2:1.44%:76,61,2,0 0/0:.:139:137:2:1.44%:76,61,2,0 -Example1_ref 3939 . A T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:78,64,1,0 0/0:.:143:142:1:0.7%:78,64,1,0 -Example1_ref 3940 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:135:135:0:0%:78,57,0,0 -Example1_ref 3941 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:78,63,0,0 0/0:.:141:141:0:0%:78,63,0,0 -Example1_ref 3942 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:79,63,0,0 0/0:.:142:142:0:0%:79,63,0,0 -Example1_ref 3943 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:79,63,0,0 0/0:.:142:142:0:0%:79,63,0,0 -Example1_ref 3944 . A ACAG . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:79,63,0,1 0/0:.:143:142:1:0.7%:79,63,0,1 -Example1_ref 3945 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:74,65,0,0 0/0:.:139:139:0:0%:74,65,0,0 -Example1_ref 3946 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:72,63,0,0 0/0:.:135:135:0:0%:72,63,0,0 -Example1_ref 3947 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:72,64,0,0 0/0:.:136:136:0:0%:72,64,0,0 -Example1_ref 3948 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:72,66,0,0 0/0:.:138:138:0:0%:72,66,0,0 -Example1_ref 3949 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:70,64,0,0 0/0:.:134:134:0:0%:70,64,0,0 -Example1_ref 3950 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:67,66,0,0 0/0:.:133:133:0:0%:67,66,0,0 -Example1_ref 3951 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:68,67,0,0 0/0:.:135:135:0:0%:68,67,0,0 -Example1_ref 3952 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:67,67,0,0 0/0:.:134:134:0:0%:67,67,0,0 -Example1_ref 3953 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:66,67,0,0 0/0:.:133:133:0:0%:66,67,0,0 -Example1_ref 3954 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:67,65,0,0 0/0:.:132:132:0:0%:67,65,0,0 -Example1_ref 3955 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:68,66,0,0 0/0:.:134:134:0:0%:68,66,0,0 -Example1_ref 3956 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:64,65,0,0 0/0:.:129:129:0:0%:64,65,0,0 -Example1_ref 3957 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:67,64,0,0 0/0:.:132:131:0:0%:67,64,0,0 -Example1_ref 3958 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:67,65,0,0 0/0:.:132:132:0:0%:67,65,0,0 -Example1_ref 3959 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:68,63,0,0 0/0:.:131:131:0:0%:68,63,0,0 -Example1_ref 3960 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:67,65,0,0 0/0:.:132:132:0:0%:67,65,0,0 -Example1_ref 3961 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:69,63,0,0 0/0:.:132:132:0:0%:69,63,0,0 -Example1_ref 3962 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:66,64,0,0 0/0:.:130:130:0:0%:66,64,0,0 -Example1_ref 3963 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:66,65,0,1 0/0:.:132:131:1:0.76%:66,65,0,1 -Example1_ref 3964 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:68,66,0,0 0/0:.:134:134:0:0%:68,66,0,0 -Example1_ref 3965 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:69,67,0,0 0/0:.:136:136:0:0%:69,67,0,0 -Example1_ref 3966 . G T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:64,67,1,0 0/0:.:132:131:1:0.76%:64,67,1,0 -Example1_ref 3967 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:70,68,0,0 0/0:.:138:138:0:0%:70,68,0,0 -Example1_ref 3968 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:67,66,0,0 0/0:.:133:133:0:0%:67,66,0,0 -Example1_ref 3969 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:70,62,0,0 0/0:.:132:132:0:0%:70,62,0,0 -Example1_ref 3970 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:70,64,0,0 0/0:.:134:134:0:0%:70,64,0,0 -Example1_ref 3971 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:137:137:0:0%:73,64,0,0 -Example1_ref 3972 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:73,65,0,0 0/0:.:138:138:0:0%:73,65,0,0 -Example1_ref 3973 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:72,64,0,0 0/0:.:136:136:0:0%:72,64,0,0 -Example1_ref 3974 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:73,61,0,0 0/0:.:134:134:0:0%:73,61,0,0 -Example1_ref 3975 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:73,59,0,0 0/0:.:132:132:0:0%:73,59,0,0 -Example1_ref 3976 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:70,55,0,0 0/0:.:125:125:0:0%:70,55,0,0 -Example1_ref 3977 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:129:129:0:0%:73,56,0,0 -Example1_ref 3978 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:125:125:0:0%:71,54,0,0 -Example1_ref 3979 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:128:128:0:0%:71,57,0,0 -Example1_ref 3980 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:70,55,0,0 0/0:.:125:125:0:0%:70,55,0,0 -Example1_ref 3981 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:69,56,0,0 0/0:.:125:125:0:0%:69,56,0,0 -Example1_ref 3982 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:66,56,0,0 0/0:.:122:122:0:0%:66,56,0,0 -Example1_ref 3983 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:66,55,0,0 0/0:.:121:121:0:0%:66,55,0,0 -Example1_ref 3984 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:67,54,0,0 0/0:.:121:121:0:0%:67,54,0,0 -Example1_ref 3985 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:67,55,0,0 0/0:.:122:122:0:0%:67,55,0,0 -Example1_ref 3986 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:67,54,0,0 0/0:.:121:121:0:0%:67,54,0,0 -Example1_ref 3987 . C A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:66,53,0,1 0/0:.:120:119:1:0.83%:66,53,0,1 -Example1_ref 3988 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 3989 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 3990 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:117:117:0:0%:63,54,0,0 -Example1_ref 3991 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:65,53,0,0 0/0:.:118:118:0:0%:65,53,0,0 -Example1_ref 3992 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 3993 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:65,53,0,0 0/0:.:118:118:0:0%:65,53,0,0 -Example1_ref 3994 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:121:121:0:0%:69,52,0,0 -Example1_ref 3995 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 3996 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:70,48,0,0 0/0:.:118:118:0:0%:70,48,0,0 -Example1_ref 3997 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:70,46,0,0 0/0:.:116:116:0:0%:70,46,0,0 -Example1_ref 3998 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 3999 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:115:115:0:0%:67,48,0,0 -Example1_ref 4000 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 4001 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:118:118:0:0%:69,49,0,0 -Example1_ref 4002 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:71,50,0,0 0/0:.:121:121:0:0%:71,50,0,0 -Example1_ref 4003 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 4004 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:117:117:0:0%:72,45,0,0 -Example1_ref 4005 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:72,47,0,0 0/0:.:119:119:0:0%:72,47,0,0 -Example1_ref 4006 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:74,49,0,0 0/0:.:123:123:0:0%:74,49,0,0 -Example1_ref 4007 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:123:123:0:0%:73,50,0,0 -Example1_ref 4008 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:125:125:0:0%:73,52,0,0 -Example1_ref 4009 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:126:126:0:0%:73,53,0,0 -Example1_ref 4010 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:80,53,0,0 0/0:.:133:133:0:0%:80,53,0,0 -Example1_ref 4011 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:78,56,0,0 0/0:.:134:134:0:0%:78,56,0,0 -Example1_ref 4012 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:79,56,0,0 0/0:.:135:135:0:0%:79,56,0,0 -Example1_ref 4013 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:139:139:0:0%:84,55,0,0 -Example1_ref 4014 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:82,54,0,0 0/0:.:136:136:0:0%:82,54,0,0 -Example1_ref 4015 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:82,55,0,0 0/0:.:137:137:0:0%:82,55,0,0 -Example1_ref 4016 . C A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:85,55,0,1 0/0:.:141:140:1:0.71%:85,55,0,1 -Example1_ref 4017 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:86,56,0,0 0/0:.:142:142:0:0%:86,56,0,0 -Example1_ref 4018 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:84,56,0,0 0/0:.:140:140:0:0%:84,56,0,0 -Example1_ref 4019 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:139:139:0:0%:84,55,0,0 -Example1_ref 4020 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:139:139:0:0%:84,55,0,0 -Example1_ref 4021 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:86,54,0,0 0/0:.:140:140:0:0%:86,54,0,0 -Example1_ref 4022 . G T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:85,55,0,1 0/0:.:141:140:1:0.71%:85,55,0,1 -Example1_ref 4023 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:85,53,0,0 0/0:.:138:138:0:0%:85,53,0,0 -Example1_ref 4024 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:86,55,0,0 0/0:.:141:141:0:0%:86,55,0,0 -Example1_ref 4025 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:85,55,0,0 0/0:.:140:140:0:0%:85,55,0,0 -Example1_ref 4026 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:86,55,0,0 0/0:.:141:141:0:0%:86,55,0,0 -Example1_ref 4027 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:87,55,0,0 0/0:.:142:142:0:0%:87,55,0,0 -Example1_ref 4028 . A T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:86,56,1,0 0/0:.:143:142:1:0.7%:86,56,1,0 -Example1_ref 4029 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:86,54,0,0 0/0:.:140:140:0:0%:86,54,0,0 -Example1_ref 4030 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:88,55,0,0 0/0:.:143:143:0:0%:88,55,0,0 -Example1_ref 4031 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:148:148:0:0%:90,58,0,0 -Example1_ref 4032 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:91,58,0,0 0/0:.:149:149:0:0%:91,58,0,0 -Example1_ref 4033 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:91,58,0,0 0/0:.:149:149:0:0%:91,58,0,0 -Example1_ref 4034 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:88,59,0,0 0/0:.:147:147:0:0%:88,59,0,0 -Example1_ref 4035 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:91,58,0,0 0/0:.:149:149:0:0%:91,58,0,0 -Example1_ref 4036 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:93,60,0,0 0/0:.:153:153:0:0%:93,60,0,0 -Example1_ref 4037 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:89,56,0,0 0/0:.:145:145:0:0%:89,56,0,0 -Example1_ref 4038 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:93,57,0,0 0/0:.:150:150:0:0%:93,57,0,0 -Example1_ref 4039 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:95,58,0,0 0/0:.:153:153:0:0%:95,58,0,0 -Example1_ref 4040 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:94,59,0,0 0/0:.:153:153:0:0%:94,59,0,0 -Example1_ref 4041 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:89,56,0,0 0/0:.:145:145:0:0%:89,56,0,0 -Example1_ref 4042 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:90,61,0,0 0/0:.:151:151:0:0%:90,61,0,0 -Example1_ref 4043 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:148:148:0:0%:90,58,0,0 -Example1_ref 4044 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 4045 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:93,60,0,0 0/0:.:153:153:0:0%:93,60,0,0 -Example1_ref 4046 . G A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:90,58,1,0 0/0:.:149:148:1:0.67%:90,58,1,0 -Example1_ref 4047 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:91,57,0,0 0/0:.:148:148:0:0%:91,57,0,0 -Example1_ref 4048 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:90,59,0,0 0/0:.:149:149:0:0%:90,59,0,0 -Example1_ref 4049 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:87,60,0,0 0/0:.:147:147:0:0%:87,60,0,0 -Example1_ref 4050 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:90,60,0,0 0/0:.:150:150:0:0%:90,60,0,0 -Example1_ref 4051 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:90,61,0,0 0/0:.:151:151:0:0%:90,61,0,0 -Example1_ref 4052 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:91,61,0,0 0/0:.:152:152:0:0%:91,61,0,0 -Example1_ref 4053 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:93,59,0,0 0/0:.:152:152:0:0%:93,59,0,0 -Example1_ref 4054 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:92,62,0,0 0/0:.:154:154:0:0%:92,62,0,0 -Example1_ref 4055 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:155:155:0:0%:93,62,0,0 -Example1_ref 4056 . C A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:92,61,1,0 0/0:.:154:153:1:0.65%:92,61,1,0 -Example1_ref 4057 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:93,61,0,0 0/0:.:154:154:0:0%:93,61,0,0 -Example1_ref 4058 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:94,62,0,0 0/0:.:156:156:0:0%:94,62,0,0 -Example1_ref 4059 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:94,58,0,0 0/0:.:152:152:0:0%:94,58,0,0 -Example1_ref 4060 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:95,57,0,0 0/0:.:152:152:0:0%:95,57,0,0 -Example1_ref 4061 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:153:153:0:0%:91,62,0,0 -Example1_ref 4062 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:98,62,0,0 0/0:.:160:160:0:0%:98,62,0,0 -Example1_ref 4063 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:97,63,0,0 0/0:.:160:160:0:0%:97,63,0,0 -Example1_ref 4064 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:96,60,0,0 0/0:.:156:156:0:0%:96,60,0,0 -Example1_ref 4065 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:162:162:0:0%:98,64,0,0 -Example1_ref 4066 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:99,63,0,0 0/0:.:162:162:0:0%:99,63,0,0 -Example1_ref 4067 . A AT . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:99,63,0,1 0/0:.:163:162:1:0.61%:99,63,0,1 -Example1_ref 4068 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:164:164:0:0%:99,65,0,0 -Example1_ref 4069 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:98,65,0,0 0/0:.:163:163:0:0%:98,65,0,0 -Example1_ref 4070 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:161:161:0:0%:97,64,0,0 -Example1_ref 4071 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:97,63,0,0 0/0:.:160:160:0:0%:97,63,0,0 -Example1_ref 4072 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:98,63,0,0 0/0:.:161:161:0:0%:98,63,0,0 -Example1_ref 4073 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:94,60,0,0 0/0:.:154:154:0:0%:94,60,0,0 -Example1_ref 4074 . T C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:97,62,0,1 0/0:.:160:159:1:0.62%:97,62,0,1 -Example1_ref 4075 . G A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:159:1:0.62%:98,61,0,1 0/0:.:161:159:1:0.62%:98,61,0,1 -Example1_ref 4076 . A G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:96,60,0,1 0/0:.:157:156:1:0.64%:96,60,0,1 -Example1_ref 4077 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:105,62,0,0 0/0:.:167:167:0:0%:105,62,0,0 -Example1_ref 4078 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:111,61,0,0 0/0:.:172:172:0:0%:111,61,0,0 -Example1_ref 4079 . GT G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:113,62,1,0 0/0:.:176:175:1:0.57%:113,62,1,0 -Example1_ref 4080 . T G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:117,60,0,1 0/0:.:178:177:1:0.56%:117,60,0,1 -Example1_ref 4081 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:117,60,0,0 0/0:.:177:177:0:0%:117,60,0,0 -Example1_ref 4082 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:117,63,0,0 0/0:.:180:180:0:0%:117,63,0,0 -Example1_ref 4083 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:118,65,0,0 0/0:.:183:183:0:0%:118,65,0,0 -Example1_ref 4084 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:117,63,0,0 0/0:.:180:180:0:0%:117,63,0,0 -Example1_ref 4085 . A ACCTGT . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:117,64,1,0 0/0:.:182:181:1:0.55%:117,64,1,0 -Example1_ref 4086 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:117,65,0,0 0/0:.:182:182:0:0%:117,65,0,0 -Example1_ref 4087 . A AG . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:116,63,0,1 0/0:.:180:179:1:0.56%:116,63,0,1 -Example1_ref 4088 . G GTTCTGGTTT . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:1:0.55%:115,65,1,0 0/0:.:181:180:1:0.55%:115,65,1,0 -Example1_ref 4089 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:119,65,0,0 0/0:.:184:184:0:0%:119,65,0,0 -Example1_ref 4090 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:117,68,0,0 0/0:.:185:185:0:0%:117,68,0,0 -Example1_ref 4091 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:120,68,0,0 0/0:.:188:188:0:0%:120,68,0,0 -Example1_ref 4092 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:118,67,0,0 0/0:.:185:185:0:0%:118,67,0,0 -Example1_ref 4093 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:119,67,0,0 0/0:.:186:186:0:0%:119,67,0,0 -Example1_ref 4094 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:118,67,0,0 0/0:.:185:185:0:0%:118,67,0,0 -Example1_ref 4095 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:122,67,0,0 0/0:.:189:189:0:0%:122,67,0,0 -Example1_ref 4096 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:121,65,0,0 0/0:.:186:186:0:0%:121,65,0,0 -Example1_ref 4097 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:119,64,0,0 0/0:.:183:183:0:0%:119,64,0,0 -Example1_ref 4098 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:120,63,0,0 0/0:.:183:183:0:0%:120,63,0,0 -Example1_ref 4099 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:120,66,0,0 0/0:.:186:186:0:0%:120,66,0,0 -Example1_ref 4100 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:121,68,0,0 0/0:.:189:189:0:0%:121,68,0,0 -Example1_ref 4101 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:122,69,0,0 0/0:.:191:191:0:0%:122,69,0,0 -Example1_ref 4102 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:123,70,0,0 0/0:.:193:193:0:0%:123,70,0,0 -Example1_ref 4103 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:121,71,0,0 0/0:.:192:192:0:0%:121,71,0,0 -Example1_ref 4104 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:123,73,0,0 0/0:.:196:196:0:0%:123,73,0,0 -Example1_ref 4105 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:119,76,0,0 0/0:.:195:195:0:0%:119,76,0,0 -Example1_ref 4106 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:117,77,0,0 0/0:.:194:194:0:0%:117,77,0,0 -Example1_ref 4107 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:119,75,0,0 0/0:.:194:194:0:0%:119,75,0,0 -Example1_ref 4108 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:126,76,0,0 0/0:.:202:202:0:0%:126,76,0,0 -Example1_ref 4109 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:127,76,0,0 0/0:.:203:203:0:0%:127,76,0,0 -Example1_ref 4110 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:127,79,0,0 0/0:.:206:206:0:0%:127,79,0,0 -Example1_ref 4111 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:129,81,0,0 0/0:.:210:210:0:0%:129,81,0,0 -Example1_ref 4112 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:130,84,0,0 0/0:.:214:214:0:0%:130,84,0,0 -Example1_ref 4113 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:131,87,0,0 0/0:.:218:218:0:0%:131,87,0,0 -Example1_ref 4114 . C A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:130,83,0,1 0/0:.:214:213:1:0.47%:130,83,0,1 -Example1_ref 4115 . C A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:129,86,1,0 0/0:.:216:215:1:0.46%:129,86,1,0 -Example1_ref 4116 . C T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:129,87,0,1 0/0:.:217:216:1:0.46%:129,87,0,1 -Example1_ref 4117 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:128,92,0,0 0/0:.:220:220:0:0%:128,92,0,0 -Example1_ref 4118 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:121,94,0,0 0/0:.:215:215:0:0%:121,94,0,0 -Example1_ref 4119 . G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:117,95,0,0 0/0:.:212:212:0:0%:117,95,0,0 -Example1_ref 4120 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:122,93,0,0 0/0:.:215:215:0:0%:122,93,0,0 -Example1_ref 4121 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:122,97,0,0 0/0:.:219:219:0:0%:122,97,0,0 -Example1_ref 4122 . C T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:126,93,1,0 0/0:.:220:219:1:0.45%:126,93,1,0 -Example1_ref 4123 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:126,102,0,0 0/0:.:228:228:0:0%:126,102,0,0 -Example1_ref 4124 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:127,101,0,0 0/0:.:228:228:0:0%:127,101,0,0 -Example1_ref 4125 . G T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:1:0.44%:126,102,1,0 0/0:.:229:228:1:0.44%:126,102,1,0 -Example1_ref 4126 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:128,102,0,0 0/0:.:230:230:0:0%:128,102,0,0 -Example1_ref 4127 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:128,103,0,0 0/0:.:231:231:0:0%:128,103,0,0 -Example1_ref 4128 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:127,102,0,0 0/0:.:229:229:0:0%:127,102,0,0 -Example1_ref 4129 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:129,98,0,0 0/0:.:227:227:0:0%:129,98,0,0 -Example1_ref 4130 . C . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:126,94,0,0 0/0:.:220:220:0:0%:126,94,0,0 -Example1_ref 4131 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:127,99,0,0 0/0:.:226:226:0:0%:127,99,0,0 -Example1_ref 4132 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:126,98,0,0 0/0:.:224:224:0:0%:126,98,0,0 -Example1_ref 4133 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:126,103,0,0 0/0:.:229:229:0:0%:126,103,0,0 -Example1_ref 4134 . G . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:124,104,0,0 0/0:.:228:228:0:0%:124,104,0,0 -Example1_ref 4135 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:126,105,0,0 0/0:.:231:231:0:0%:126,105,0,0 -Example1_ref 4136 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:127,105,0,0 0/0:.:232:232:0:0%:127,105,0,0 -Example1_ref 4137 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:129,105,0,0 0/0:.:234:234:0:0%:129,105,0,0 -Example1_ref 4138 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:129,107,0,0 0/0:.:236:236:0:0%:129,107,0,0 -Example1_ref 4139 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:129,106,0,0 0/0:.:235:235:0:0%:129,106,0,0 -Example1_ref 4140 . G T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:125,105,1,0 0/0:.:231:230:1:0.43%:125,105,1,0 -Example1_ref 4141 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:125,105,0,0 0/0:.:230:230:0:0%:125,105,0,0 -Example1_ref 4142 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:126,102,0,0 0/0:.:228:228:0:0%:126,102,0,0 -Example1_ref 4143 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:129,104,0,0 0/0:.:233:233:0:0%:129,104,0,0 -Example1_ref 4144 . G GC . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:128,106,1,0 0/0:.:235:234:1:0.43%:128,106,1,0 -Example1_ref 4145 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:128,106,0,0 0/0:.:234:234:0:0%:128,106,0,0 -Example1_ref 4146 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:128,108,0,0 0/0:.:236:236:0:0%:128,108,0,0 -Example1_ref 4147 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:129,106,0,0 0/0:.:235:235:0:0%:129,106,0,0 -Example1_ref 4148 . T A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:232:1:0.43%:129,103,1,0 0/0:.:234:232:1:0.43%:129,103,1,0 -Example1_ref 4149 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:128,104,0,0 0/0:.:232:232:0:0%:128,104,0,0 -Example1_ref 4150 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:0:0%:128,105,0,0 0/0:.:234:233:0:0%:128,105,0,0 -Example1_ref 4151 . G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:127,105,0,0 0/0:.:232:232:0:0%:127,105,0,0 -Example1_ref 4152 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:126,105,0,0 0/0:.:231:231:0:0%:126,105,0,0 -Example1_ref 4153 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:129,105,0,0 0/0:.:234:234:0:0%:129,105,0,0 -Example1_ref 4154 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:123,104,0,0 0/0:.:227:227:0:0%:123,104,0,0 -Example1_ref 4155 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:125,104,0,0 0/0:.:229:229:0:0%:125,104,0,0 -Example1_ref 4156 . C . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:126,107,0,0 0/0:.:233:233:0:0%:126,107,0,0 -Example1_ref 4157 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:125,108,0,0 0/0:.:233:233:0:0%:125,108,0,0 -Example1_ref 4158 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:124,106,0,0 0/0:.:230:230:0:0%:124,106,0,0 -Example1_ref 4159 . C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:125,106,0,0 0/0:.:231:231:0:0%:125,106,0,0 -Example1_ref 4160 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:126,105,0,0 0/0:.:231:231:0:0%:126,105,0,0 -Example1_ref 4161 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:124,105,0,0 0/0:.:229:229:0:0%:124,105,0,0 -Example1_ref 4162 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:123,105,0,0 0/0:.:228:228:0:0%:123,105,0,0 -Example1_ref 4163 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:123,106,0,0 0/0:.:229:229:0:0%:123,106,0,0 -Example1_ref 4164 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:124,107,0,0 0/0:.:231:231:0:0%:124,107,0,0 -Example1_ref 4165 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:121,108,0,0 0/0:.:229:229:0:0%:121,108,0,0 -Example1_ref 4166 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:119,106,0,0 0/0:.:225:225:0:0%:119,106,0,0 -Example1_ref 4167 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:119,106,0,0 0/0:.:225:225:0:0%:119,106,0,0 -Example1_ref 4168 . T C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:121,109,1,0 0/0:.:231:230:1:0.43%:121,109,1,0 -Example1_ref 4169 . C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:121,106,0,0 0/0:.:227:227:0:0%:121,106,0,0 -Example1_ref 4170 . T A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:122,107,1,0 0/0:.:230:229:1:0.43%:122,107,1,0 -Example1_ref 4171 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:123,108,0,0 0/0:.:231:231:0:0%:123,108,0,0 -Example1_ref 4172 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:122,107,0,0 0/0:.:229:229:0:0%:122,107,0,0 -Example1_ref 4173 . C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:123,104,0,0 0/0:.:227:227:0:0%:123,104,0,0 -Example1_ref 4174 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:121,106,0,0 0/0:.:227:227:0:0%:121,106,0,0 -Example1_ref 4175 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:123,106,0,0 0/0:.:229:229:0:0%:123,106,0,0 -Example1_ref 4176 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:120,104,0,0 0/0:.:224:224:0:0%:120,104,0,0 -Example1_ref 4177 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:121,108,0,0 0/0:.:229:229:0:0%:121,108,0,0 -Example1_ref 4178 . C A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:118,108,0,1 0/0:.:227:226:1:0.44%:118,108,0,1 -Example1_ref 4179 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:118,109,0,0 0/0:.:227:227:0:0%:118,109,0,0 -Example1_ref 4180 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:117,110,0,0 0/0:.:227:227:0:0%:117,110,0,0 -Example1_ref 4181 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:119,110,0,0 0/0:.:229:229:0:0%:119,110,0,0 -Example1_ref 4182 . G A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=6.8832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:229:2:0.87%:119,110,1,1 0/0:.:231:229:2:0.87%:119,110,1,1 -Example1_ref 4183 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:122,111,0,0 0/0:.:233:233:0:0%:122,111,0,0 -Example1_ref 4184 . C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:116,110,0,0 0/0:.:226:226:0:0%:116,110,0,0 -Example1_ref 4185 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:222:222:0:0%:115,107,0,0 -Example1_ref 4186 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:115,109,0,0 0/0:.:224:224:0:0%:115,109,0,0 -Example1_ref 4187 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:116,114,0,0 0/0:.:230:230:0:0%:116,114,0,0 -Example1_ref 4188 . C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:116,110,0,0 0/0:.:226:226:0:0%:116,110,0,0 -Example1_ref 4189 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:117,113,0,0 0/0:.:230:230:0:0%:117,113,0,0 -Example1_ref 4190 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:114,111,0,0 0/0:.:225:225:0:0%:114,111,0,0 -Example1_ref 4191 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:116,113,0,0 0/0:.:229:229:0:0%:116,113,0,0 -Example1_ref 4192 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:119,112,0,0 0/0:.:231:231:0:0%:119,112,0,0 -Example1_ref 4193 . G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:119,113,0,0 0/0:.:232:232:0:0%:119,113,0,0 -Example1_ref 4194 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:0:0%:114,113,0,0 0/0:.:228:227:0:0%:114,113,0,0 -Example1_ref 4195 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:115,113,0,0 0/0:.:228:228:0:0%:115,113,0,0 -Example1_ref 4196 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:222:222:0:0%:115,107,0,0 -Example1_ref 4197 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:218:218:0:0%:113,105,0,0 -Example1_ref 4198 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:115,104,0,0 0/0:.:219:219:0:0%:115,104,0,0 -Example1_ref 4199 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:215:215:0:0%:111,104,0,0 -Example1_ref 4200 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:108,105,0,0 0/0:.:213:213:0:0%:108,105,0,0 -Example1_ref 4201 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:110,102,0,0 0/0:.:212:212:0:0%:110,102,0,0 -Example1_ref 4202 . A G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:214:1:0.47%:111,103,1,0 0/0:.:216:214:1:0.47%:111,103,1,0 -Example1_ref 4203 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:109,105,0,0 0/0:.:214:214:0:0%:109,105,0,0 -Example1_ref 4204 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:109,108,0,0 0/0:.:217:217:0:0%:109,108,0,0 -Example1_ref 4205 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:109,107,0,0 0/0:.:216:216:0:0%:109,107,0,0 -Example1_ref 4206 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:108,103,0,0 0/0:.:211:211:0:0%:108,103,0,0 -Example1_ref 4207 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:107,106,0,0 0/0:.:213:213:0:0%:107,106,0,0 -Example1_ref 4208 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:213:213:0:0%:109,104,0,0 -Example1_ref 4209 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:210:210:0:0%:105,105,0,0 -Example1_ref 4210 . C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:103,104,0,0 0/0:.:207:207:0:0%:103,104,0,0 -Example1_ref 4211 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:104,104,0,0 0/0:.:208:208:0:0%:104,104,0,0 -Example1_ref 4212 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:106,103,0,0 0/0:.:209:209:0:0%:106,103,0,0 -Example1_ref 4213 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:107,104,0,0 0/0:.:211:211:0:0%:107,104,0,0 -Example1_ref 4214 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:105,102,0,0 0/0:.:207:207:0:0%:105,102,0,0 -Example1_ref 4215 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:108,104,0,0 0/0:.:212:212:0:0%:108,104,0,0 -Example1_ref 4216 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:104,105,0,0 0/0:.:209:209:0:0%:104,105,0,0 -Example1_ref 4217 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:210:210:0:0%:105,105,0,0 -Example1_ref 4218 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:105,103,0,0 0/0:.:208:208:0:0%:105,103,0,0 -Example1_ref 4219 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:106,103,0,0 0/0:.:209:209:0:0%:106,103,0,0 -Example1_ref 4220 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:104,103,0,0 0/0:.:207:207:0:0%:104,103,0,0 -Example1_ref 4221 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:101,99,0,0 0/0:.:200:200:0:0%:101,99,0,0 -Example1_ref 4222 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:102,104,0,0 0/0:.:206:206:0:0%:102,104,0,0 -Example1_ref 4223 . G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:102,104,0,0 0/0:.:206:206:0:0%:102,104,0,0 -Example1_ref 4224 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:205:205:0:0%:102,103,0,0 -Example1_ref 4225 . G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:101,103,0,0 0/0:.:204:204:0:0%:101,103,0,0 -Example1_ref 4226 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:97,103,0,0 0/0:.:200:200:0:0%:97,103,0,0 -Example1_ref 4227 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:99,103,0,0 0/0:.:202:202:0:0%:99,103,0,0 -Example1_ref 4228 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:205:205:0:0%:102,103,0,0 -Example1_ref 4229 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:101,107,0,0 0/0:.:208:208:0:0%:101,107,0,0 -Example1_ref 4230 . G T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:94,107,1,0 0/0:.:202:201:1:0.5%:94,107,1,0 -Example1_ref 4231 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:102,107,0,0 0/0:.:209:209:0:0%:102,107,0,0 -Example1_ref 4232 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:100,105,0,0 0/0:.:205:205:0:0%:100,105,0,0 -Example1_ref 4233 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:203:203:0:0%:100,103,0,0 -Example1_ref 4234 . G T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:96,105,1,0 0/0:.:202:201:1:0.5%:96,105,1,0 -Example1_ref 4235 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:95,102,0,0 0/0:.:197:197:0:0%:95,102,0,0 -Example1_ref 4236 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:101,102,0,0 0/0:.:203:203:0:0%:101,102,0,0 -Example1_ref 4237 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:103,104,0,0 0/0:.:207:207:0:0%:103,104,0,0 -Example1_ref 4238 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:102,102,0,0 0/0:.:204:204:0:0%:102,102,0,0 -Example1_ref 4239 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:100,102,0,0 0/0:.:202:202:0:0%:100,102,0,0 -Example1_ref 4240 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:97,104,0,0 0/0:.:201:201:0:0%:97,104,0,0 -Example1_ref 4241 . G GTATAAGAGACA . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:96,101,0,1 0/0:.:198:197:1:0.51%:96,101,0,1 -Example1_ref 4242 . G A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:93,102,1,0 0/0:.:196:195:1:0.51%:93,102,1,0 -Example1_ref 4243 . AT A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:95,100,0,1 0/0:.:196:195:1:0.51%:95,100,0,1 -Example1_ref 4244 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:0:0%:97,100,0,0 0/0:.:198:197:0:0%:97,100,0,0 -Example1_ref 4245 . C A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=6.5743E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:197:3:1.5%:98,99,1,2 0/0:.:200:197:3:1.5%:98,99,1,2 -Example1_ref 4246 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:100,102,0,0 0/0:.:202:202:0:0%:100,102,0,0 -Example1_ref 4247 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:203:203:0:0%:100,103,0,0 -Example1_ref 4248 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:100,101,0,0 0/0:.:201:201:0:0%:100,101,0,0 -Example1_ref 4249 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:203:203:0:0%:100,103,0,0 -Example1_ref 4250 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:100,102,0,0 0/0:.:202:202:0:0%:100,102,0,0 -Example1_ref 4251 . C . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:97,104,0,0 0/0:.:201:201:0:0%:97,104,0,0 -Example1_ref 4252 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:93,101,0,0 0/0:.:194:194:0:0%:93,101,0,0 -Example1_ref 4253 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:197:197:0:0%:94,103,0,0 -Example1_ref 4254 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:89,102,0,0 0/0:.:191:191:0:0%:89,102,0,0 -Example1_ref 4255 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:92,100,0,0 0/0:.:192:192:0:0%:92,100,0,0 -Example1_ref 4256 . T A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:93,99,0,1 0/0:.:193:192:1:0.52%:93,99,0,1 -Example1_ref 4257 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:88,100,0,0 0/0:.:188:188:0:0%:88,100,0,0 -Example1_ref 4258 . C . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:91,98,0,0 0/0:.:189:189:0:0%:91,98,0,0 -Example1_ref 4259 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:92,101,0,0 0/0:.:193:193:0:0%:92,101,0,0 -Example1_ref 4260 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:92,105,0,0 0/0:.:197:197:0:0%:92,105,0,0 -Example1_ref 4261 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:91,104,0,0 0/0:.:195:195:0:0%:91,104,0,0 -Example1_ref 4262 . A C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:192:1:0.52%:87,105,1,0 0/0:.:194:192:1:0.52%:87,105,1,0 -Example1_ref 4263 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:91,103,0,0 0/0:.:194:194:0:0%:91,103,0,0 -Example1_ref 4264 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:94,98,0,0 0/0:.:192:192:0:0%:94,98,0,0 -Example1_ref 4265 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:94,102,0,0 0/0:.:196:196:0:0%:94,102,0,0 -Example1_ref 4266 . C . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:89,100,0,0 0/0:.:189:189:0:0%:89,100,0,0 -Example1_ref 4267 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:86,99,0,0 0/0:.:185:185:0:0%:86,99,0,0 -Example1_ref 4268 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:76,103,0,0 0/0:.:179:179:0:0%:76,103,0,0 -Example1_ref 4269 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:73,104,0,0 0/0:.:177:177:0:0%:73,104,0,0 -Example1_ref 4270 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:74,106,0,0 0/0:.:180:180:0:0%:74,106,0,0 -Example1_ref 4271 . T A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:76,106,0,1 0/0:.:183:182:1:0.55%:76,106,0,1 -Example1_ref 4272 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:77,102,0,0 0/0:.:179:179:0:0%:77,102,0,0 -Example1_ref 4273 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:78,103,0,0 0/0:.:181:181:0:0%:78,103,0,0 -Example1_ref 4274 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:76,104,0,0 0/0:.:180:180:0:0%:76,104,0,0 -Example1_ref 4275 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:78,105,0,0 0/0:.:183:183:0:0%:78,105,0,0 -Example1_ref 4276 . GGCATCA G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:77,107,1,0 0/0:.:185:184:1:0.54%:77,107,1,0 -Example1_ref 4277 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:74,106,0,0 0/0:.:180:180:0:0%:74,106,0,0 -Example1_ref 4278 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:73,104,0,0 0/0:.:177:177:0:0%:73,104,0,0 -Example1_ref 4279 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:71,104,0,0 0/0:.:175:175:0:0%:71,104,0,0 -Example1_ref 4280 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:74,105,0,0 0/0:.:179:179:0:0%:74,105,0,0 -Example1_ref 4281 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:76,107,0,0 0/0:.:183:183:0:0%:76,107,0,0 -Example1_ref 4282 . A T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:76,108,1,0 0/0:.:185:184:1:0.54%:76,108,1,0 -Example1_ref 4283 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:76,106,0,0 0/0:.:182:182:0:0%:76,106,0,0 -Example1_ref 4284 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:76,109,0,0 0/0:.:185:185:0:0%:76,109,0,0 -Example1_ref 4285 . A AG . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:72,103,0,1 0/0:.:176:175:1:0.57%:72,103,0,1 -Example1_ref 4286 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:76,100,0,0 0/0:.:176:176:0:0%:76,100,0,0 -Example1_ref 4287 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:75,102,0,0 0/0:.:177:177:0:0%:75,102,0,0 -Example1_ref 4288 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:70,102,0,0 0/0:.:173:172:0:0%:70,102,0,0 -Example1_ref 4289 . C A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:71,99,0,1 0/0:.:171:170:1:0.58%:71,99,0,1 -Example1_ref 4290 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:73,95,0,0 0/0:.:168:168:0:0%:73,95,0,0 -Example1_ref 4291 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:66,96,0,0 0/0:.:162:162:0:0%:66,96,0,0 -Example1_ref 4292 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:68,91,0,0 0/0:.:159:159:0:0%:68,91,0,0 -Example1_ref 4293 . C T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:66,88,0,1 0/0:.:155:154:1:0.65%:66,88,0,1 -Example1_ref 4294 . C T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:153:1:0.65%:64,89,1,0 0/0:.:155:153:1:0.65%:64,89,1,0 -Example1_ref 4295 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:66,83,0,0 0/0:.:149:149:0:0%:66,83,0,0 -Example1_ref 4296 . A G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:66,83,1,0 0/0:.:150:149:1:0.67%:66,83,1,0 -Example1_ref 4297 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:67,83,0,0 0/0:.:150:150:0:0%:67,83,0,0 -Example1_ref 4298 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:64,82,0,0 0/0:.:146:146:0:0%:64,82,0,0 -Example1_ref 4299 . C CCTGTCTCTT . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:63,83,1,0 0/0:.:147:146:1:0.68%:63,83,1,0 -Example1_ref 4300 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:0:0%:61,75,0,0 0/0:.:137:136:0:0%:61,75,0,0 -Example1_ref 4301 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:61,75,0,0 0/0:.:136:136:0:0%:61,75,0,0 -Example1_ref 4302 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:61,75,0,0 0/0:.:136:136:0:0%:61,75,0,0 -Example1_ref 4303 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:128:128:0:0%:57,71,0,0 -Example1_ref 4304 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:58,68,0,0 0/0:.:126:126:0:0%:58,68,0,0 -Example1_ref 4305 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:57,70,0,0 0/0:.:127:127:0:0%:57,70,0,0 -Example1_ref 4306 . A G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.5102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:57,65,0,1 0/0:.:123:122:1:0.81%:57,65,0,1 -Example1_ref 4307 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:56,66,0,0 0/0:.:122:122:0:0%:56,66,0,0 -Example1_ref 4308 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:58,64,0,0 0/0:.:122:122:0:0%:58,64,0,0 -Example1_ref 4309 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:55,66,0,0 0/0:.:121:121:0:0%:55,66,0,0 -Example1_ref 4310 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:55,58,0,0 0/0:.:113:113:0:0%:55,58,0,0 -Example1_ref 4311 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:114:114:0:0%:55,59,0,0 -Example1_ref 4312 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:55,53,0,0 0/0:.:108:108:0:0%:55,53,0,0 -Example1_ref 4313 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:55,61,0,0 0/0:.:116:116:0:0%:55,61,0,0 -Example1_ref 4314 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 4315 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 4316 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:116:116:0:0%:56,60,0,0 -Example1_ref 4317 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:56,59,0,0 0/0:.:115:115:0:0%:56,59,0,0 -Example1_ref 4318 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:59,57,0,0 0/0:.:116:116:0:0%:59,57,0,0 -Example1_ref 4319 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:116:116:0:0%:56,60,0,0 -Example1_ref 4320 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 4321 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:58,59,0,0 0/0:.:117:117:0:0%:58,59,0,0 -Example1_ref 4322 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 4323 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:58,57,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 4324 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 4325 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:117:117:0:0%:63,54,0,0 -Example1_ref 4326 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:0:0%:63,54,0,0 0/0:.:118:117:0:0%:63,54,0,0 -Example1_ref 4327 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:63,55,0,0 0/0:.:118:118:0:0%:63,55,0,0 -Example1_ref 4328 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:120:120:0:0%:63,57,0,0 -Example1_ref 4329 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 4330 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:65,55,0,0 0/0:.:120:120:0:0%:65,55,0,0 -Example1_ref 4331 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:65,55,0,0 0/0:.:120:120:0:0%:65,55,0,0 -Example1_ref 4332 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 4333 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:0:0%:64,53,0,0 0/0:.:118:117:0:0%:64,53,0,0 -Example1_ref 4334 . G T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5107E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:116:1:0.85%:63,53,0,1 0/0:.:118:116:1:0.85%:63,53,0,1 -Example1_ref 4335 . G A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:110:1:0.9%:56,54,1,0 0/0:.:112:110:1:0.9%:56,54,1,0 -Example1_ref 4336 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:58,54,0,0 0/0:.:112:112:0:0%:58,54,0,0 -Example1_ref 4337 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:114:114:0:0%:59,55,0,0 -Example1_ref 4338 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:59,53,0,0 0/0:.:112:112:0:0%:59,53,0,0 -Example1_ref 4339 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:64,53,0,0 0/0:.:117:117:0:0%:64,53,0,0 -Example1_ref 4340 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:61,54,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 4341 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 4342 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:117:117:0:0%:61,56,0,0 -Example1_ref 4343 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:117:117:0:0%:63,54,0,0 -Example1_ref 4344 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:117:117:0:0%:63,54,0,0 -Example1_ref 4345 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:61,52,0,0 0/0:.:113:113:0:0%:61,52,0,0 -Example1_ref 4346 . G A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=7.5107E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:116:1:0.85%:63,53,1,0 0/0:.:117:116:1:0.85%:63,53,1,0 -Example1_ref 4347 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:122:122:0:0%:69,53,0,0 -Example1_ref 4348 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:119:119:0:0%:71,48,0,0 -Example1_ref 4349 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:121:121:0:0%:69,52,0,0 -Example1_ref 4350 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:122:122:0:0%:69,53,0,0 -Example1_ref 4351 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:125:125:0:0%:73,52,0,0 -Example1_ref 4352 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:126:126:0:0%:72,54,0,0 -Example1_ref 4353 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:126:126:0:0%:72,54,0,0 -Example1_ref 4354 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:127:127:0:0%:74,53,0,0 -Example1_ref 4355 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:122:122:0:0%:69,53,0,0 -Example1_ref 4356 . G T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=7.5104E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:67,53,1,0 0/0:.:121:120:1:0.83%:67,53,1,0 -Example1_ref 4357 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:70,51,0,0 0/0:.:121:121:0:0%:70,51,0,0 -Example1_ref 4358 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:122:122:0:0%:69,53,0,0 -Example1_ref 4359 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:127:127:0:0%:74,53,0,0 -Example1_ref 4360 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:68,52,0,0 0/0:.:120:120:0:0%:68,52,0,0 -Example1_ref 4361 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:129:129:0:0%:76,53,0,0 -Example1_ref 4362 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 4363 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:130:130:0:0%:77,53,0,0 -Example1_ref 4364 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:127:127:0:0%:75,52,0,0 -Example1_ref 4365 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:132:132:0:0%:78,54,0,0 -Example1_ref 4366 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:132:132:0:0%:78,54,0,0 -Example1_ref 4367 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:131:131:0:0%:75,56,0,0 -Example1_ref 4368 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:79,54,0,0 0/0:.:134:133:0:0%:79,54,0,0 -Example1_ref 4369 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:79,52,0,0 0/0:.:131:131:0:0%:79,52,0,0 -Example1_ref 4370 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:82,53,0,0 0/0:.:135:135:0:0%:82,53,0,0 -Example1_ref 4371 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:134:134:0:0%:81,53,0,0 -Example1_ref 4372 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 4373 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 4374 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:79,54,0,0 0/0:.:133:133:0:0%:79,54,0,0 -Example1_ref 4375 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:80,54,0,0 0/0:.:134:134:0:0%:80,54,0,0 -Example1_ref 4376 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:130:130:0:0%:78,52,0,0 -Example1_ref 4377 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:79,53,0,0 0/0:.:132:132:0:0%:79,53,0,0 -Example1_ref 4378 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:132:132:0:0%:78,54,0,0 -Example1_ref 4379 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:130:130:0:0%:77,53,0,0 -Example1_ref 4380 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:127:127:0:0%:75,52,0,0 -Example1_ref 4381 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:128:128:0:0%:76,52,0,0 -Example1_ref 4382 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 4383 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:121:121:0:0%:69,52,0,0 -Example1_ref 4384 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:120:120:0:0%:70,50,0,0 -Example1_ref 4385 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 4386 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:70,52,0,0 0/0:.:122:122:0:0%:70,52,0,0 -Example1_ref 4387 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:125:125:0:0%:73,52,0,0 -Example1_ref 4388 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:74,51,0,0 0/0:.:125:125:0:0%:74,51,0,0 -Example1_ref 4389 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:127:127:0:0%:75,52,0,0 -Example1_ref 4390 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:74,51,0,0 0/0:.:125:125:0:0%:74,51,0,0 -Example1_ref 4391 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:122:122:0:0%:73,49,0,0 -Example1_ref 4392 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 4393 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:75,55,0,0 0/0:.:130:130:0:0%:75,55,0,0 -Example1_ref 4394 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:128:128:0:0%:75,53,0,0 -Example1_ref 4395 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:74,56,0,0 0/0:.:130:130:0:0%:74,56,0,0 -Example1_ref 4396 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:129:129:0:0%:73,56,0,0 -Example1_ref 4397 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:131:131:0:0%:75,56,0,0 -Example1_ref 4398 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:79,57,0,0 0/0:.:136:136:0:0%:79,57,0,0 -Example1_ref 4399 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:79,53,0,0 0/0:.:132:132:0:0%:79,53,0,0 -Example1_ref 4400 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 4401 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:80,55,0,0 0/0:.:135:135:0:0%:80,55,0,0 -Example1_ref 4402 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:133:133:0:0%:78,55,0,0 -Example1_ref 4403 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:135:135:0:0%:78,57,0,0 -Example1_ref 4404 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 4405 . G T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:77,57,1,0 0/0:.:135:134:1:0.74%:77,57,1,0 -Example1_ref 4406 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 4407 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:135:135:0:0%:78,57,0,0 -Example1_ref 4408 . C A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=6.8899E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:125:2:1.57%:75,50,0,2 0/0:.:127:125:2:1.57%:75,50,0,2 -Example1_ref 4409 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:132:132:0:0%:74,58,0,0 -Example1_ref 4410 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:81,60,0,0 0/0:.:141:141:0:0%:81,60,0,0 -Example1_ref 4411 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:82,58,0,0 0/0:.:140:140:0:0%:82,58,0,0 -Example1_ref 4412 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:80,53,0,0 0/0:.:133:133:0:0%:80,53,0,0 -Example1_ref 4413 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:134:134:0:0%:77,57,0,0 -Example1_ref 4414 . CG C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:79,57,1,0 0/0:.:137:136:1:0.73%:79,57,1,0 -Example1_ref 4415 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:135:135:0:0%:78,57,0,0 -Example1_ref 4416 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:131:131:0:0%:73,58,0,0 -Example1_ref 4417 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:75,58,0,0 0/0:.:133:133:0:0%:75,58,0,0 -Example1_ref 4418 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:75,58,0,0 0/0:.:133:133:0:0%:75,58,0,0 -Example1_ref 4419 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:131:131:0:0%:76,55,0,0 -Example1_ref 4420 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:79,54,0,0 0/0:.:133:133:0:0%:79,54,0,0 -Example1_ref 4421 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 4422 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 4423 . C A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:79,50,0,1 0/0:.:130:129:1:0.77%:79,50,0,1 -Example1_ref 4424 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 4425 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:131:131:0:0%:76,55,0,0 -Example1_ref 4426 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:77,55,0,0 0/0:.:132:132:0:0%:77,55,0,0 -Example1_ref 4427 . A G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:77,54,1,0 0/0:.:132:131:1:0.76%:77,54,1,0 -Example1_ref 4428 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 4429 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 4430 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:78,56,0,0 0/0:.:134:134:0:0%:78,56,0,0 -Example1_ref 4431 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:79,57,0,0 0/0:.:136:136:0:0%:79,57,0,0 -Example1_ref 4432 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:79,57,0,0 0/0:.:136:136:0:0%:79,57,0,0 -Example1_ref 4433 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:80,58,0,0 0/0:.:138:138:0:0%:80,58,0,0 -Example1_ref 4434 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:132:132:0:0%:78,54,0,0 -Example1_ref 4435 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:133:133:0:0%:78,55,0,0 -Example1_ref 4436 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:133:133:0:0%:78,55,0,0 -Example1_ref 4437 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:131:131:0:0%:75,56,0,0 -Example1_ref 4438 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:78,60,0,0 0/0:.:138:138:0:0%:78,60,0,0 -Example1_ref 4439 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:82,59,0,0 0/0:.:141:141:0:0%:82,59,0,0 -Example1_ref 4440 . G A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:86,58,1,0 0/0:.:145:144:1:0.69%:86,58,1,0 -Example1_ref 4441 . A G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:83,57,1,0 0/0:.:141:140:1:0.71%:83,57,1,0 -Example1_ref 4442 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:86,59,0,0 0/0:.:145:145:0:0%:86,59,0,0 -Example1_ref 4443 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:90,57,0,0 0/0:.:147:147:0:0%:90,57,0,0 -Example1_ref 4444 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:97,62,0,0 0/0:.:159:159:0:0%:97,62,0,0 -Example1_ref 4445 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:98,60,0,0 0/0:.:158:158:0:0%:98,60,0,0 -Example1_ref 4446 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:104,65,0,0 0/0:.:169:169:0:0%:104,65,0,0 -Example1_ref 4447 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:105,63,0,0 0/0:.:168:168:0:0%:105,63,0,0 -Example1_ref 4448 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:103,64,0,0 0/0:.:167:167:0:0%:103,64,0,0 -Example1_ref 4449 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:107,63,0,0 0/0:.:170:170:0:0%:107,63,0,0 -Example1_ref 4450 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:108,60,0,0 0/0:.:168:168:0:0%:108,60,0,0 -Example1_ref 4451 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:123,62,0,0 0/0:.:185:185:0:0%:123,62,0,0 -Example1_ref 4452 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:122,60,0,0 0/0:.:182:182:0:0%:122,60,0,0 -Example1_ref 4453 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:121,62,0,0 0/0:.:183:183:0:0%:121,62,0,0 -Example1_ref 4454 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:123,61,0,0 0/0:.:184:184:0:0%:123,61,0,0 -Example1_ref 4455 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:123,62,0,0 0/0:.:186:185:0:0%:123,62,0,0 -Example1_ref 4456 . G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:123,63,0,0 0/0:.:186:186:0:0%:123,63,0,0 -Example1_ref 4457 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:127,65,0,0 0/0:.:192:192:0:0%:127,65,0,0 -Example1_ref 4458 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:134,63,0,0 0/0:.:197:197:0:0%:134,63,0,0 -Example1_ref 4459 . C A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:134,62,0,1 0/0:.:197:196:1:0.51%:134,62,0,1 -Example1_ref 4460 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:135,61,0,0 0/0:.:196:196:0:0%:135,61,0,0 -Example1_ref 4461 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:131,61,0,0 0/0:.:192:192:0:0%:131,61,0,0 -Example1_ref 4462 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:139,60,0,0 0/0:.:199:199:0:0%:139,60,0,0 -Example1_ref 4463 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:137,67,0,0 0/0:.:204:204:0:0%:137,67,0,0 -Example1_ref 4464 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:135,67,0,0 0/0:.:202:202:0:0%:135,67,0,0 -Example1_ref 4465 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:135,65,0,0 0/0:.:200:200:0:0%:135,65,0,0 -Example1_ref 4466 . C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:134,64,0,0 0/0:.:199:198:0:0%:134,64,0,0 -Example1_ref 4467 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:137,63,0,0 0/0:.:200:200:0:0%:137,63,0,0 -Example1_ref 4468 . G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:137,64,0,0 0/0:.:201:201:0:0%:137,64,0,0 -Example1_ref 4469 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:138,64,0,0 0/0:.:202:202:0:0%:138,64,0,0 -Example1_ref 4470 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:132,63,0,0 0/0:.:195:195:0:0%:132,63,0,0 -Example1_ref 4471 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:132,62,0,0 0/0:.:194:194:0:0%:132,62,0,0 -Example1_ref 4472 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:131,60,0,0 0/0:.:191:191:0:0%:131,60,0,0 -Example1_ref 4473 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:132,61,0,0 0/0:.:193:193:0:0%:132,61,0,0 -Example1_ref 4474 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:133,61,0,0 0/0:.:194:194:0:0%:133,61,0,0 -Example1_ref 4475 . G T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=6.885E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:186:2:1.06%:124,62,2,0 0/0:.:188:186:2:1.06%:124,62,2,0 -Example1_ref 4476 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:128,63,0,0 0/0:.:191:191:0:0%:128,63,0,0 -Example1_ref 4477 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:128,63,0,0 0/0:.:191:191:0:0%:128,63,0,0 -Example1_ref 4478 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:129,66,0,0 0/0:.:195:195:0:0%:129,66,0,0 -Example1_ref 4479 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:132,66,0,0 0/0:.:198:198:0:0%:132,66,0,0 -Example1_ref 4480 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:129,66,0,0 0/0:.:195:195:0:0%:129,66,0,0 -Example1_ref 4481 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:130,70,0,0 0/0:.:200:200:0:0%:130,70,0,0 -Example1_ref 4482 . T C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:128,70,0,1 0/0:.:199:198:1:0.5%:128,70,0,1 -Example1_ref 4483 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:129,69,0,0 0/0:.:198:198:0:0%:129,69,0,0 -Example1_ref 4484 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:126,69,0,0 0/0:.:195:195:0:0%:126,69,0,0 -Example1_ref 4485 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:129,70,0,0 0/0:.:199:199:0:0%:129,70,0,0 -Example1_ref 4486 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:128,71,0,0 0/0:.:199:199:0:0%:128,71,0,0 -Example1_ref 4487 . T G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:126,68,0,1 0/0:.:195:194:1:0.51%:126,68,0,1 -Example1_ref 4488 . T C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:128,69,1,0 0/0:.:198:197:1:0.51%:128,69,1,0 -Example1_ref 4489 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:131,68,0,0 0/0:.:199:199:0:0%:131,68,0,0 -Example1_ref 4490 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:129,71,0,0 0/0:.:200:200:0:0%:129,71,0,0 -Example1_ref 4491 . T C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:128,71,1,0 0/0:.:200:199:1:0.5%:128,71,1,0 -Example1_ref 4492 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:129,72,0,0 0/0:.:201:201:0:0%:129,72,0,0 -Example1_ref 4493 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:132,71,0,0 0/0:.:203:203:0:0%:132,71,0,0 -Example1_ref 4494 . T G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:127,69,1,0 0/0:.:197:196:1:0.51%:127,69,1,0 -Example1_ref 4495 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:124,69,0,0 0/0:.:193:193:0:0%:124,69,0,0 -Example1_ref 4496 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:128,71,0,0 0/0:.:199:199:0:0%:128,71,0,0 -Example1_ref 4497 . C . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:127,70,0,0 0/0:.:197:197:0:0%:127,70,0,0 -Example1_ref 4498 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:130,70,0,0 0/0:.:200:200:0:0%:130,70,0,0 -Example1_ref 4499 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:128,70,0,0 0/0:.:198:198:0:0%:128,70,0,0 -Example1_ref 4500 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:132,72,0,0 0/0:.:204:204:0:0%:132,72,0,0 -Example1_ref 4501 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:126,70,0,0 0/0:.:196:196:0:0%:126,70,0,0 -Example1_ref 4502 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:124,73,0,0 0/0:.:197:197:0:0%:124,73,0,0 -Example1_ref 4503 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:122,71,0,0 0/0:.:193:193:0:0%:122,71,0,0 -Example1_ref 4504 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:122,77,0,0 0/0:.:199:199:0:0%:122,77,0,0 -Example1_ref 4505 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:130,74,0,0 0/0:.:204:204:0:0%:130,74,0,0 -Example1_ref 4506 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:125,76,0,0 0/0:.:201:201:0:0%:125,76,0,0 -Example1_ref 4507 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:125,77,0,0 0/0:.:202:202:0:0%:125,77,0,0 -Example1_ref 4508 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:127,76,0,0 0/0:.:203:203:0:0%:127,76,0,0 -Example1_ref 4509 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:130,79,0,0 0/0:.:209:209:0:0%:130,79,0,0 -Example1_ref 4510 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:128,79,0,0 0/0:.:207:207:0:0%:128,79,0,0 -Example1_ref 4511 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:125,77,0,0 0/0:.:202:202:0:0%:125,77,0,0 -Example1_ref 4512 . G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:128,78,0,0 0/0:.:206:206:0:0%:128,78,0,0 -Example1_ref 4513 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:127,79,0,0 0/0:.:206:206:0:0%:127,79,0,0 -Example1_ref 4514 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:119,76,0,0 0/0:.:195:195:0:0%:119,76,0,0 -Example1_ref 4515 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:119,77,0,0 0/0:.:196:196:0:0%:119,77,0,0 -Example1_ref 4516 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:124,74,0,0 0/0:.:198:198:0:0%:124,74,0,0 -Example1_ref 4517 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:128,76,0,0 0/0:.:204:204:0:0%:128,76,0,0 -Example1_ref 4518 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:126,77,0,0 0/0:.:203:203:0:0%:126,77,0,0 -Example1_ref 4519 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:124,76,0,0 0/0:.:200:200:0:0%:124,76,0,0 -Example1_ref 4520 . A AG . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:123,79,0,1 0/0:.:203:202:1:0.49%:123,79,0,1 -Example1_ref 4521 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:135,80,0,0 0/0:.:215:215:0:0%:135,80,0,0 -Example1_ref 4522 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:136,80,0,0 0/0:.:216:216:0:0%:136,80,0,0 -Example1_ref 4523 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:139,77,0,0 0/0:.:216:216:0:0%:139,77,0,0 -Example1_ref 4524 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:135,80,0,0 0/0:.:215:215:0:0%:135,80,0,0 -Example1_ref 4525 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:140,80,0,0 0/0:.:220:220:0:0%:140,80,0,0 -Example1_ref 4526 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:137,80,0,0 0/0:.:217:217:0:0%:137,80,0,0 -Example1_ref 4527 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:138,80,0,0 0/0:.:218:218:0:0%:138,80,0,0 -Example1_ref 4528 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:142,81,0,0 0/0:.:223:223:0:0%:142,81,0,0 -Example1_ref 4529 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:0:0%:140,86,0,0 0/0:.:227:226:0:0%:140,86,0,0 -Example1_ref 4530 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:141,85,0,0 0/0:.:226:226:0:0%:141,85,0,0 -Example1_ref 4531 . C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:0:0%:139,81,0,0 0/0:.:221:220:0:0%:139,81,0,0 -Example1_ref 4532 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:140,91,0,0 0/0:.:231:231:0:0%:140,91,0,0 -Example1_ref 4533 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:139,91,0,0 0/0:.:230:230:0:0%:139,91,0,0 -Example1_ref 4534 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:141,90,0,0 0/0:.:231:231:0:0%:141,90,0,0 -Example1_ref 4535 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:134,91,0,0 0/0:.:225:225:0:0%:134,91,0,0 -Example1_ref 4536 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:139,90,0,0 0/0:.:229:229:0:0%:139,90,0,0 -Example1_ref 4537 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:141,93,0,0 0/0:.:234:234:0:0%:141,93,0,0 -Example1_ref 4538 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:142,93,0,0 0/0:.:235:235:0:0%:142,93,0,0 -Example1_ref 4539 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:143,91,0,0 0/0:.:234:234:0:0%:143,91,0,0 -Example1_ref 4540 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:142,91,0,0 0/0:.:233:233:0:0%:142,91,0,0 -Example1_ref 4541 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:143,91,0,0 0/0:.:234:234:0:0%:143,91,0,0 -Example1_ref 4542 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:144,90,0,0 0/0:.:234:234:0:0%:144,90,0,0 -Example1_ref 4543 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:143,93,0,0 0/0:.:236:236:0:0%:143,93,0,0 -Example1_ref 4544 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:140,92,0,0 0/0:.:232:232:0:0%:140,92,0,0 -Example1_ref 4545 . C . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:146,90,0,0 0/0:.:236:236:0:0%:146,90,0,0 -Example1_ref 4546 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:144,93,0,0 0/0:.:237:237:0:0%:144,93,0,0 -Example1_ref 4547 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:148,92,0,0 0/0:.:240:240:0:0%:148,92,0,0 -Example1_ref 4548 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:152,94,0,0 0/0:.:246:246:0:0%:152,94,0,0 -Example1_ref 4549 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:156,95,0,0 0/0:.:251:251:0:0%:156,95,0,0 -Example1_ref 4550 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:154,92,0,0 0/0:.:246:246:0:0%:154,92,0,0 -Example1_ref 4551 . CA C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:239:1:0.42%:151,88,0,1 0/0:.:241:239:1:0.42%:151,88,0,1 -Example1_ref 4552 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:151,88,0,0 0/0:.:239:239:0:0%:151,88,0,0 -Example1_ref 4553 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:151,89,0,0 0/0:.:240:240:0:0%:151,89,0,0 -Example1_ref 4554 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:151,88,0,0 0/0:.:239:239:0:0%:151,88,0,0 -Example1_ref 4555 . A G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:154,89,0,1 0/0:.:244:243:1:0.41%:154,89,0,1 -Example1_ref 4556 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:152,89,0,0 0/0:.:241:241:0:0%:152,89,0,0 -Example1_ref 4557 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:156,91,0,0 0/0:.:247:247:0:0%:156,91,0,0 -Example1_ref 4558 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:156,89,0,0 0/0:.:245:245:0:0%:156,89,0,0 -Example1_ref 4559 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:151,87,0,0 0/0:.:238:238:0:0%:151,87,0,0 -Example1_ref 4560 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:154,90,0,0 0/0:.:244:244:0:0%:154,90,0,0 -Example1_ref 4561 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:155,91,0,0 0/0:.:246:246:0:0%:155,91,0,0 -Example1_ref 4562 . G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:151,93,0,0 0/0:.:244:244:0:0%:151,93,0,0 -Example1_ref 4563 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:155,91,0,0 0/0:.:246:246:0:0%:155,91,0,0 -Example1_ref 4564 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:155,93,0,0 0/0:.:248:248:0:0%:155,93,0,0 -Example1_ref 4565 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:156,91,0,0 0/0:.:247:247:0:0%:156,91,0,0 -Example1_ref 4566 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:158,90,0,0 0/0:.:248:248:0:0%:158,90,0,0 -Example1_ref 4567 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:158,90,0,0 0/0:.:248:248:0:0%:158,90,0,0 -Example1_ref 4568 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:156,92,0,0 0/0:.:248:248:0:0%:156,92,0,0 -Example1_ref 4569 . A G . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=6.8824E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:252:2:0.79%:160,92,2,0 0/0:.:254:252:2:0.79%:160,92,2,0 -Example1_ref 4570 . G . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:163,90,0,0 0/0:.:253:253:0:0%:163,90,0,0 -Example1_ref 4571 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:163,95,0,0 0/0:.:258:258:0:0%:163,95,0,0 -Example1_ref 4572 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:163,98,0,0 0/0:.:261:261:0:0%:163,98,0,0 -Example1_ref 4573 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:165,98,0,0 0/0:.:263:263:0:0%:165,98,0,0 -Example1_ref 4574 . G . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:174,96,0,0 0/0:.:270:270:0:0%:174,96,0,0 -Example1_ref 4575 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:175,97,0,0 0/0:.:272:272:0:0%:175,97,0,0 -Example1_ref 4576 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:181,101,0,0 0/0:.:282:282:0:0%:181,101,0,0 -Example1_ref 4577 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:180,98,0,0 0/0:.:278:278:0:0%:180,98,0,0 -Example1_ref 4578 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:180,100,0,0 0/0:.:280:280:0:0%:180,100,0,0 -Example1_ref 4579 . C A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:176,98,0,1 0/0:.:275:274:1:0.36%:176,98,0,1 -Example1_ref 4580 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:176,97,0,0 0/0:.:273:273:0:0%:176,97,0,0 -Example1_ref 4581 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:0:0%:177,99,0,0 0/0:.:277:276:0:0%:177,99,0,0 -Example1_ref 4582 . G . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:178,101,0,0 0/0:.:279:279:0:0%:178,101,0,0 -Example1_ref 4583 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:177,100,0,0 0/0:.:277:277:0:0%:177,100,0,0 -Example1_ref 4584 . G . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:177,98,0,0 0/0:.:275:275:0:0%:177,98,0,0 -Example1_ref 4585 . G . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:176,97,0,0 0/0:.:273:273:0:0%:176,97,0,0 -Example1_ref 4586 . G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:171,96,0,0 0/0:.:267:267:0:0%:171,96,0,0 -Example1_ref 4587 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:174,93,0,0 0/0:.:267:267:0:0%:174,93,0,0 -Example1_ref 4588 . G . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:176,96,0,0 0/0:.:272:272:0:0%:176,96,0,0 -Example1_ref 4589 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:173,97,0,0 0/0:.:270:270:0:0%:173,97,0,0 -Example1_ref 4590 . T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:174,93,0,0 0/0:.:267:267:0:0%:174,93,0,0 -Example1_ref 4591 . T C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:180,94,1,0 0/0:.:275:274:1:0.36%:180,94,1,0 -Example1_ref 4592 . T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:181,108,0,0 0/0:.:289:289:0:0%:181,108,0,0 -Example1_ref 4593 . G . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:183,109,0,0 0/0:.:292:292:0:0%:183,109,0,0 -Example1_ref 4594 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:184,109,0,0 0/0:.:293:293:0:0%:184,109,0,0 -Example1_ref 4595 . T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:184,105,0,0 0/0:.:289:289:0:0%:184,105,0,0 -Example1_ref 4596 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:183,106,0,0 0/0:.:289:289:0:0%:183,106,0,0 -Example1_ref 4597 . T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:182,107,0,0 0/0:.:289:289:0:0%:182,107,0,0 -Example1_ref 4598 . C A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:188,105,0,1 0/0:.:294:293:1:0.34%:188,105,0,1 -Example1_ref 4599 . C A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:195,113,1,0 0/0:.:309:308:1:0.32%:195,113,1,0 -Example1_ref 4600 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:191,113,0,0 0/0:.:304:304:0:0%:191,113,0,0 -Example1_ref 4601 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:192,111,0,0 0/0:.:303:303:0:0%:192,111,0,0 -Example1_ref 4602 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:193,115,0,0 0/0:.:308:308:0:0%:193,115,0,0 -Example1_ref 4603 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:194,115,0,0 0/0:.:309:309:0:0%:194,115,0,0 -Example1_ref 4604 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:193,117,0,0 0/0:.:310:310:0:0%:193,117,0,0 -Example1_ref 4605 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:195,114,0,0 0/0:.:309:309:0:0%:195,114,0,0 -Example1_ref 4606 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:190,118,0,0 0/0:.:308:308:0:0%:190,118,0,0 -Example1_ref 4607 . G A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:187,120,0,1 0/0:.:308:307:1:0.32%:187,120,0,1 -Example1_ref 4608 . A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:188,118,0,0 0/0:.:306:306:0:0%:188,118,0,0 -Example1_ref 4609 . C A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=6.8811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:306:2:0.65%:198,108,0,2 0/0:.:308:306:2:0.65%:198,108,0,2 -Example1_ref 4610 . C . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:195,118,0,0 0/0:.:313:313:0:0%:195,118,0,0 -Example1_ref 4611 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:195,114,0,0 0/0:.:309:309:0:0%:195,114,0,0 -Example1_ref 4612 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:311:0:0%:195,116,0,0 0/0:.:313:311:0:0%:195,116,0,0 -Example1_ref 4613 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:194,114,0,0 0/0:.:308:308:0:0%:194,114,0,0 -Example1_ref 4614 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:196,114,0,0 0/0:.:310:310:0:0%:196,114,0,0 -Example1_ref 4615 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:196,111,0,0 0/0:.:307:307:0:0%:196,111,0,0 -Example1_ref 4616 . C A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:192,111,0,1 0/0:.:304:303:1:0.33%:192,111,0,1 -Example1_ref 4617 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:191,114,0,0 0/0:.:305:305:0:0%:191,114,0,0 -Example1_ref 4618 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:187,117,0,0 0/0:.:304:304:0:0%:187,117,0,0 -Example1_ref 4619 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:188,113,0,0 0/0:.:301:301:0:0%:188,113,0,0 -Example1_ref 4620 . A G . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:193,122,0,1 0/0:.:316:315:1:0.32%:193,122,0,1 -Example1_ref 4621 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:193,121,0,0 0/0:.:314:314:0:0%:193,121,0,0 -Example1_ref 4622 . C . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:190,122,0,0 0/0:.:312:312:0:0%:190,122,0,0 -Example1_ref 4623 . TC T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:192,121,1,0 0/0:.:314:313:1:0.32%:192,121,1,0 -Example1_ref 4624 . C . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:190,125,0,0 0/0:.:315:315:0:0%:190,125,0,0 -Example1_ref 4625 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:191,125,0,0 0/0:.:316:316:0:0%:191,125,0,0 -Example1_ref 4626 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:192,126,0,0 0/0:.:318:318:0:0%:192,126,0,0 -Example1_ref 4627 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:196,127,0,0 0/0:.:323:323:0:0%:196,127,0,0 -Example1_ref 4628 . C . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:194,123,0,0 0/0:.:317:317:0:0%:194,123,0,0 -Example1_ref 4629 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:194,121,0,0 0/0:.:315:315:0:0%:194,121,0,0 -Example1_ref 4630 . A T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:190,123,1,0 0/0:.:314:313:1:0.32%:190,123,1,0 -Example1_ref 4631 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:186,122,0,0 0/0:.:308:308:0:0%:186,122,0,0 -Example1_ref 4632 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:191,119,0,0 0/0:.:310:310:0:0%:191,119,0,0 -Example1_ref 4633 . T G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:188,119,1,0 0/0:.:308:307:1:0.32%:188,119,1,0 -Example1_ref 4634 . A ACTG . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:182,120,1,0 0/0:.:303:302:1:0.33%:182,120,1,0 -Example1_ref 4635 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:186,116,0,0 0/0:.:302:302:0:0%:186,116,0,0 -Example1_ref 4636 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:176,118,0,0 0/0:.:294:294:0:0%:176,118,0,0 -Example1_ref 4637 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:177,119,0,0 0/0:.:296:296:0:0%:177,119,0,0 -Example1_ref 4638 . G . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:171,117,0,0 0/0:.:288:288:0:0%:171,117,0,0 -Example1_ref 4639 . G . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:163,115,0,0 0/0:.:278:278:0:0%:163,115,0,0 -Example1_ref 4640 . G . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:161,116,0,0 0/0:.:277:277:0:0%:161,116,0,0 -Example1_ref 4641 . CT C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=6.8819E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:270:2:0.74%:151,119,2,0 0/0:.:273:270:2:0.74%:151,119,2,0 -Example1_ref 4642 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:159,116,0,0 0/0:.:275:275:0:0%:159,116,0,0 -Example1_ref 4643 . T C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:272:1:0.37%:155,117,0,1 0/0:.:274:272:1:0.37%:155,117,0,1 -Example1_ref 4644 . C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:166,118,0,0 0/0:.:284:284:0:0%:166,118,0,0 -Example1_ref 4645 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:167,121,0,0 0/0:.:288:288:0:0%:167,121,0,0 -Example1_ref 4646 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:171,120,0,0 0/0:.:291:291:0:0%:171,120,0,0 -Example1_ref 4647 . C . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:170,119,0,0 0/0:.:289:289:0:0%:170,119,0,0 -Example1_ref 4648 . A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:161,120,0,0 0/0:.:281:281:0:0%:161,120,0,0 -Example1_ref 4649 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:294:294:0:0%:171,123,0,0 -Example1_ref 4650 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:171,122,0,0 0/0:.:293:293:0:0%:171,122,0,0 -Example1_ref 4651 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:167,119,0,0 0/0:.:286:286:0:0%:167,119,0,0 -Example1_ref 4652 . G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:165,122,0,0 0/0:.:287:287:0:0%:165,122,0,0 -Example1_ref 4653 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:164,116,0,0 0/0:.:280:280:0:0%:164,116,0,0 -Example1_ref 4654 . G . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:167,117,0,0 0/0:.:284:284:0:0%:167,117,0,0 -Example1_ref 4655 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:168,118,0,0 0/0:.:286:286:0:0%:168,118,0,0 -Example1_ref 4656 . T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:170,114,0,0 0/0:.:284:284:0:0%:170,114,0,0 -Example1_ref 4657 . C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:170,114,0,0 0/0:.:284:284:0:0%:170,114,0,0 -Example1_ref 4658 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:171,119,0,0 0/0:.:290:290:0:0%:171,119,0,0 -Example1_ref 4659 . C T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:176,114,1,0 0/0:.:291:290:1:0.34%:176,114,1,0 -Example1_ref 4660 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:173,120,0,0 0/0:.:293:293:0:0%:173,120,0,0 -Example1_ref 4661 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:173,119,0,0 0/0:.:292:292:0:0%:173,119,0,0 -Example1_ref 4662 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:176,120,0,0 0/0:.:296:296:0:0%:176,120,0,0 -Example1_ref 4663 . A C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:175,117,1,0 0/0:.:293:292:1:0.34%:175,117,1,0 -Example1_ref 4664 . G . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:180,118,0,0 0/0:.:298:298:0:0%:180,118,0,0 -Example1_ref 4665 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:180,117,0,0 0/0:.:297:297:0:0%:180,117,0,0 -Example1_ref 4666 . A T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:177,117,2,0 0/0:.:296:294:2:0.68%:177,117,2,0 -Example1_ref 4667 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:178,119,0,0 0/0:.:297:297:0:0%:178,119,0,0 -Example1_ref 4668 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:176,108,0,0 0/0:.:284:284:0:0%:176,108,0,0 -Example1_ref 4669 . T A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:179,114,1,0 0/0:.:294:293:1:0.34%:179,114,1,0 -Example1_ref 4670 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:175,119,0,0 0/0:.:294:294:0:0%:175,119,0,0 -Example1_ref 4671 . C T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=6.8813E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:2:0.67%:180,115,2,0 0/0:.:297:295:2:0.67%:180,115,2,0 -Example1_ref 4672 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:183,117,0,0 0/0:.:300:300:0:0%:183,117,0,0 -Example1_ref 4673 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:182,117,0,0 0/0:.:299:299:0:0%:182,117,0,0 -Example1_ref 4674 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:182,115,0,0 0/0:.:297:297:0:0%:182,115,0,0 -Example1_ref 4675 . T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:180,114,0,0 0/0:.:294:294:0:0%:180,114,0,0 -Example1_ref 4676 . T C . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:180,117,0,1 0/0:.:298:297:1:0.34%:180,117,0,1 -Example1_ref 4677 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:179,127,0,0 0/0:.:306:306:0:0%:179,127,0,0 -Example1_ref 4678 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:180,125,0,0 0/0:.:305:305:0:0%:180,125,0,0 -Example1_ref 4679 . C . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:177,126,0,0 0/0:.:303:303:0:0%:177,126,0,0 -Example1_ref 4680 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:178,125,0,0 0/0:.:303:303:0:0%:178,125,0,0 -Example1_ref 4681 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:181,126,0,0 0/0:.:307:307:0:0%:181,126,0,0 -Example1_ref 4682 . C A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:181,123,0,1 0/0:.:305:304:1:0.33%:181,123,0,1 -Example1_ref 4683 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:178,122,0,0 0/0:.:301:300:0:0%:178,122,0,0 -Example1_ref 4684 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:180,123,0,0 0/0:.:303:303:0:0%:180,123,0,0 -Example1_ref 4685 . T A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:1:0.33%:181,125,0,1 0/0:.:307:306:1:0.33%:181,125,0,1 -Example1_ref 4686 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:182,128,0,0 0/0:.:310:310:0:0%:182,128,0,0 -Example1_ref 4687 . T G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:180,127,0,1 0/0:.:308:307:1:0.32%:180,127,0,1 -Example1_ref 4688 . T A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:178,126,0,1 0/0:.:305:304:1:0.33%:178,126,0,1 -Example1_ref 4689 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:183,128,0,0 0/0:.:311:311:0:0%:183,128,0,0 -Example1_ref 4690 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:182,130,0,0 0/0:.:312:312:0:0%:182,130,0,0 -Example1_ref 4691 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:182,128,0,0 0/0:.:310:310:0:0%:182,128,0,0 -Example1_ref 4692 . C . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:181,123,0,0 0/0:.:304:304:0:0%:181,123,0,0 -Example1_ref 4693 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:182,123,0,0 0/0:.:305:305:0:0%:182,123,0,0 -Example1_ref 4694 . G . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:182,125,0,0 0/0:.:307:307:0:0%:182,125,0,0 -Example1_ref 4695 . G T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=6.8813E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:2:0.67%:168,127,2,0 0/0:.:297:295:2:0.67%:168,127,2,0 -Example1_ref 4696 . C T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:177,124,1,0 0/0:.:302:301:1:0.33%:177,124,1,0 -Example1_ref 4697 . G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:175,131,0,0 0/0:.:306:306:0:0%:175,131,0,0 -Example1_ref 4698 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:171,131,0,0 0/0:.:302:302:0:0%:171,131,0,0 -Example1_ref 4699 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:180,128,0,0 0/0:.:308:308:0:0%:180,128,0,0 -Example1_ref 4700 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:182,128,0,0 0/0:.:310:310:0:0%:182,128,0,0 -Example1_ref 4701 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:183,128,0,0 0/0:.:311:311:0:0%:183,128,0,0 -Example1_ref 4702 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:180,129,0,0 0/0:.:309:309:0:0%:180,129,0,0 -Example1_ref 4703 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:179,130,0,0 0/0:.:309:309:0:0%:179,130,0,0 -Example1_ref 4704 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:177,131,0,0 0/0:.:308:308:0:0%:177,131,0,0 -Example1_ref 4705 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:177,132,0,0 0/0:.:309:309:0:0%:177,132,0,0 -Example1_ref 4706 . T G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=6.881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:310:2:0.64%:182,128,0,2 0/0:.:312:310:2:0.64%:182,128,0,2 -Example1_ref 4707 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:181,137,0,0 0/0:.:318:318:0:0%:181,137,0,0 -Example1_ref 4708 . C A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:313:1:0.32%:182,131,0,1 0/0:.:315:313:1:0.32%:182,131,0,1 -Example1_ref 4709 . T A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:182,128,0,1 0/0:.:311:310:1:0.32%:182,128,0,1 -Example1_ref 4710 . A G . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:322:2:0.62%:194,128,1,1 0/0:.:324:322:2:0.62%:194,128,1,1 -Example1_ref 4711 . T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:187,125,0,0 0/0:.:312:312:0:0%:187,125,0,0 -Example1_ref 4712 . C . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:191,126,0,0 0/0:.:317:317:0:0%:191,126,0,0 -Example1_ref 4713 . C . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:188,129,0,0 0/0:.:317:317:0:0%:188,129,0,0 -Example1_ref 4714 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:192,131,0,0 0/0:.:323:323:0:0%:192,131,0,0 -Example1_ref 4715 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:0:0%:190,134,0,0 0/0:.:325:324:0:0%:190,134,0,0 -Example1_ref 4716 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:192,134,0,0 0/0:.:326:326:0:0%:192,134,0,0 -Example1_ref 4717 . C . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:189,133,0,0 0/0:.:322:322:0:0%:189,133,0,0 -Example1_ref 4718 . A . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:185,136,0,0 0/0:.:321:321:0:0%:185,136,0,0 -Example1_ref 4719 . T C . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:186,124,1,0 0/0:.:311:310:1:0.32%:186,124,1,0 -Example1_ref 4720 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:184,126,0,0 0/0:.:310:310:0:0%:184,126,0,0 -Example1_ref 4721 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:183,124,0,0 0/0:.:307:307:0:0%:183,124,0,0 -Example1_ref 4722 . T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:188,124,0,0 0/0:.:312:312:0:0%:188,124,0,0 -Example1_ref 4723 . T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:186,126,0,0 0/0:.:312:312:0:0%:186,126,0,0 -Example1_ref 4724 . G T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:180,125,1,0 0/0:.:306:305:1:0.33%:180,125,1,0 -Example1_ref 4725 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:182,127,0,0 0/0:.:309:309:0:0%:182,127,0,0 -Example1_ref 4726 . A G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:182,125,1,0 0/0:.:308:307:1:0.32%:182,125,1,0 -Example1_ref 4727 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:178,125,0,0 0/0:.:303:303:0:0%:178,125,0,0 -Example1_ref 4728 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:169,124,0,0 0/0:.:293:293:0:0%:169,124,0,0 -Example1_ref 4729 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:168,125,0,0 0/0:.:293:293:0:0%:168,125,0,0 -Example1_ref 4730 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:294:294:0:0%:171,123,0,0 -Example1_ref 4731 . G GCTGTCTC . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:169,121,1,0 0/0:.:291:290:1:0.34%:169,121,1,0 -Example1_ref 4732 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:160,125,0,0 0/0:.:285:285:0:0%:160,125,0,0 -Example1_ref 4733 . G . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:169,121,0,0 0/0:.:290:290:0:0%:169,121,0,0 -Example1_ref 4734 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:175,120,0,0 0/0:.:295:295:0:0%:175,120,0,0 -Example1_ref 4735 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:172,118,0,0 0/0:.:290:290:0:0%:172,118,0,0 -Example1_ref 4736 . G . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:170,118,0,0 0/0:.:288:288:0:0%:170,118,0,0 -Example1_ref 4737 . G T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:282:1:0.35%:166,116,1,0 0/0:.:283:282:1:0.35%:166,116,1,0 -Example1_ref 4738 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:165,118,0,0 0/0:.:283:283:0:0%:165,118,0,0 -Example1_ref 4739 . A ACTGTC . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:161,122,1,0 0/0:.:284:283:1:0.35%:161,122,1,0 -Example1_ref 4740 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:171,120,0,0 0/0:.:291:291:0:0%:171,120,0,0 -Example1_ref 4741 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:172,120,0,0 0/0:.:292:292:0:0%:172,120,0,0 -Example1_ref 4742 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:173,121,0,0 0/0:.:294:294:0:0%:173,121,0,0 -Example1_ref 4743 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:175,121,0,0 0/0:.:296:296:0:0%:175,121,0,0 -Example1_ref 4744 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:172,124,0,0 0/0:.:296:296:0:0%:172,124,0,0 -Example1_ref 4745 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:176,127,0,0 0/0:.:303:303:0:0%:176,127,0,0 -Example1_ref 4746 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:173,127,0,0 0/0:.:300:300:0:0%:173,127,0,0 -Example1_ref 4747 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:174,128,0,0 0/0:.:302:302:0:0%:174,128,0,0 -Example1_ref 4748 . C CCTGTCTCT . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:171,121,1,0 0/0:.:293:292:1:0.34%:171,121,1,0 -Example1_ref 4749 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:174,125,0,0 0/0:.:299:299:0:0%:174,125,0,0 -Example1_ref 4750 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:170,128,0,0 0/0:.:298:298:0:0%:170,128,0,0 -Example1_ref 4751 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:173,124,0,0 0/0:.:297:297:0:0%:173,124,0,0 -Example1_ref 4752 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:171,125,0,0 0/0:.:296:296:0:0%:171,125,0,0 -Example1_ref 4753 . G T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:1:0.34%:166,128,1,0 0/0:.:296:294:1:0.34%:166,128,1,0 -Example1_ref 4754 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:173,132,0,0 0/0:.:305:305:0:0%:173,132,0,0 -Example1_ref 4755 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:172,136,0,0 0/0:.:308:308:0:0%:172,136,0,0 -Example1_ref 4756 . TTAA T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:172,133,1,0 0/0:.:306:305:1:0.33%:172,133,1,0 -Example1_ref 4757 . T TTTG . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:169,132,1,0 0/0:.:302:301:1:0.33%:169,132,1,0 -Example1_ref 4758 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:0:0%:167,137,0,0 0/0:.:305:304:0:0%:167,137,0,0 -Example1_ref 4759 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:165,138,0,0 0/0:.:303:303:0:0%:165,138,0,0 -Example1_ref 4760 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:164,135,0,0 0/0:.:299:299:0:0%:164,135,0,0 -Example1_ref 4761 . A T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:163,135,1,0 0/0:.:299:298:1:0.33%:163,135,1,0 -Example1_ref 4762 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:0:0%:162,136,0,0 0/0:.:299:298:0:0%:162,136,0,0 -Example1_ref 4763 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:173,130,0,0 0/0:.:303:303:0:0%:173,130,0,0 -Example1_ref 4764 . C . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:169,135,0,0 0/0:.:304:304:0:0%:169,135,0,0 -Example1_ref 4765 . T TC . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:168,133,1,0 0/0:.:302:301:1:0.33%:168,133,1,0 -Example1_ref 4766 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:163,137,0,0 0/0:.:300:300:0:0%:163,137,0,0 -Example1_ref 4767 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:164,132,0,0 0/0:.:296:296:0:0%:164,132,0,0 -Example1_ref 4768 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:165,139,0,0 0/0:.:304:304:0:0%:165,139,0,0 -Example1_ref 4769 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:165,133,0,0 0/0:.:298:298:0:0%:165,133,0,0 -Example1_ref 4770 . T C . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:162,139,1,0 0/0:.:302:301:1:0.33%:162,139,1,0 -Example1_ref 4771 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:162,138,0,0 0/0:.:300:300:0:0%:162,138,0,0 -Example1_ref 4772 . T C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:158,138,1,0 0/0:.:297:296:1:0.34%:158,138,1,0 -Example1_ref 4773 . G T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:167,137,1,0 0/0:.:305:304:1:0.33%:167,137,1,0 -Example1_ref 4774 . A G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:175,145,1,0 0/0:.:321:320:1:0.31%:175,145,1,0 -Example1_ref 4775 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:173,136,0,0 0/0:.:309:309:0:0%:173,136,0,0 -Example1_ref 4776 . C A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:1:0.32%:176,138,0,1 0/0:.:315:314:1:0.32%:176,138,0,1 -Example1_ref 4777 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:174,141,0,0 0/0:.:315:315:0:0%:174,141,0,0 -Example1_ref 4778 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:337:0:0%:192,145,0,0 0/0:.:339:337:0:0%:192,145,0,0 -Example1_ref 4779 . G . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:196,144,0,0 0/0:.:340:340:0:0%:196,144,0,0 -Example1_ref 4780 . A T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:341:1:0.29%:197,144,1,0 0/0:.:342:341:1:0.29%:197,144,1,0 -Example1_ref 4781 . T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:198,144,0,0 0/0:.:342:342:0:0%:198,144,0,0 -Example1_ref 4782 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:194,135,0,0 0/0:.:329:329:0:0%:194,135,0,0 -Example1_ref 4783 . T . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:195,131,0,0 0/0:.:326:326:0:0%:195,131,0,0 -Example1_ref 4784 . A G . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:196,134,0,1 0/0:.:331:330:1:0.3%:196,134,0,1 -Example1_ref 4785 . C T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:197,131,1,0 0/0:.:329:328:1:0.3%:197,131,1,0 -Example1_ref 4786 . C . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:195,129,0,0 0/0:.:324:324:0:0%:195,129,0,0 -Example1_ref 4787 . C . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:198,126,0,0 0/0:.:324:324:0:0%:198,126,0,0 -Example1_ref 4788 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:201,129,0,0 0/0:.:330:330:0:0%:201,129,0,0 -Example1_ref 4789 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:198,125,0,0 0/0:.:323:323:0:0%:198,125,0,0 -Example1_ref 4790 . T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:199,129,0,0 0/0:.:328:328:0:0%:199,129,0,0 -Example1_ref 4791 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:200,129,0,0 0/0:.:329:329:0:0%:200,129,0,0 -Example1_ref 4792 . A T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:201,126,0,1 0/0:.:328:327:1:0.3%:201,126,0,1 -Example1_ref 4793 . G GC . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:197,127,1,0 0/0:.:325:324:1:0.31%:197,127,1,0 -Example1_ref 4794 . C . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:202,122,0,0 0/0:.:324:324:0:0%:202,122,0,0 -Example1_ref 4795 . CA C . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:201,124,1,0 0/0:.:326:325:1:0.31%:201,124,1,0 -Example1_ref 4796 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:203,125,0,0 0/0:.:329:328:0:0%:203,125,0,0 -Example1_ref 4797 . G A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:199,125,0,1 0/0:.:325:324:1:0.31%:199,125,0,1 -Example1_ref 4798 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:199,126,0,0 0/0:.:325:325:0:0%:199,126,0,0 -Example1_ref 4799 . G . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:195,125,0,0 0/0:.:320:320:0:0%:195,125,0,0 -Example1_ref 4800 . C . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:199,124,0,0 0/0:.:323:323:0:0%:199,124,0,0 -Example1_ref 4801 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:204,125,0,0 0/0:.:329:329:0:0%:204,125,0,0 -Example1_ref 4802 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:205,126,0,0 0/0:.:331:331:0:0%:205,126,0,0 -Example1_ref 4803 . A ATTTTG . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:204,127,1,0 0/0:.:332:331:1:0.3%:204,127,1,0 -Example1_ref 4804 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:207,126,0,0 0/0:.:333:333:0:0%:207,126,0,0 -Example1_ref 4805 . A G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:206,125,0,1 0/0:.:332:331:1:0.3%:206,125,0,1 -Example1_ref 4806 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:206,126,0,0 0/0:.:332:332:0:0%:206,126,0,0 -Example1_ref 4807 . G . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:205,124,0,0 0/0:.:329:329:0:0%:205,124,0,0 -Example1_ref 4808 . A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:202,120,0,0 0/0:.:322:322:0:0%:202,120,0,0 -Example1_ref 4809 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:200,121,0,0 0/0:.:321:321:0:0%:200,121,0,0 -Example1_ref 4810 . A ATCTG . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:199,121,1,0 0/0:.:321:320:1:0.31%:199,121,1,0 -Example1_ref 4811 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:202,118,0,0 0/0:.:320:320:0:0%:202,118,0,0 -Example1_ref 4812 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:196,119,0,0 0/0:.:315:315:0:0%:196,119,0,0 -Example1_ref 4813 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:210,121,0,0 0/0:.:331:331:0:0%:210,121,0,0 -Example1_ref 4814 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:209,116,0,0 0/0:.:325:325:0:0%:209,116,0,0 -Example1_ref 4815 . C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:210,121,0,0 0/0:.:331:331:0:0%:210,121,0,0 -Example1_ref 4816 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:209,123,0,0 0/0:.:332:332:0:0%:209,123,0,0 -Example1_ref 4817 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:210,122,0,0 0/0:.:332:332:0:0%:210,122,0,0 -Example1_ref 4818 . A T . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:209,122,0,1 0/0:.:332:331:1:0.3%:209,122,0,1 -Example1_ref 4819 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:207,121,0,0 0/0:.:328:328:0:0%:207,121,0,0 -Example1_ref 4820 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:209,125,0,0 0/0:.:334:334:0:0%:209,125,0,0 -Example1_ref 4821 . C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:206,122,0,0 0/0:.:328:328:0:0%:206,122,0,0 -Example1_ref 4822 . T . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:209,117,0,0 0/0:.:326:326:0:0%:209,117,0,0 -Example1_ref 4823 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:201,123,0,0 0/0:.:324:324:0:0%:201,123,0,0 -Example1_ref 4824 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:207,130,0,0 0/0:.:337:337:0:0%:207,130,0,0 -Example1_ref 4825 . G T . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:203,128,1,0 0/0:.:332:331:1:0.3%:203,128,1,0 -Example1_ref 4826 . G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:197,130,0,0 0/0:.:327:327:0:0%:197,130,0,0 -Example1_ref 4827 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:206,133,0,0 0/0:.:339:339:0:0%:206,133,0,0 -Example1_ref 4828 . C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:0:0%:213,125,0,0 0/0:.:339:338:0:0%:213,125,0,0 -Example1_ref 4829 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:342:0:0%:210,132,0,0 0/0:.:346:342:0:0%:210,132,0,0 -Example1_ref 4830 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:211,131,0,0 0/0:.:342:342:0:0%:211,131,0,0 -Example1_ref 4831 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:212,138,0,0 0/0:.:350:350:0:0%:212,138,0,0 -Example1_ref 4832 . A G . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:213,138,0,1 0/0:.:353:351:1:0.28%:213,138,0,1 -Example1_ref 4833 . GA G . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=6.5694E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:337:3:0.88%:206,131,1,2 0/0:.:340:337:3:0.88%:206,131,1,2 -Example1_ref 4834 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:202,136,0,0 0/0:.:338:338:0:0%:202,136,0,0 -Example1_ref 4835 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:206,140,0,0 0/0:.:346:346:0:0%:206,140,0,0 -Example1_ref 4836 . G GC . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:337:1:0.3%:201,136,1,0 0/0:.:338:337:1:0.3%:201,136,1,0 -Example1_ref 4837 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:204,133,0,0 0/0:.:337:337:0:0%:204,133,0,0 -Example1_ref 4838 . C . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:199,133,0,0 0/0:.:333:332:0:0%:199,133,0,0 -Example1_ref 4839 . A G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:341:1:0.29%:198,143,1,0 0/0:.:343:341:1:0.29%:198,143,1,0 -Example1_ref 4840 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:199,148,0,0 0/0:.:347:347:0:0%:199,148,0,0 -Example1_ref 4841 . C . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:201,146,0,0 0/0:.:347:347:0:0%:201,146,0,0 -Example1_ref 4842 . A AG . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:202,146,0,1 0/0:.:349:348:1:0.29%:202,146,0,1 -Example1_ref 4843 . C . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:199,149,0,0 0/0:.:348:348:0:0%:199,149,0,0 -Example1_ref 4844 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:195,151,0,0 0/0:.:346:346:0:0%:195,151,0,0 -Example1_ref 4845 . A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:202,154,0,0 0/0:.:356:356:0:0%:202,154,0,0 -Example1_ref 4846 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:201,154,0,0 0/0:.:355:355:0:0%:201,154,0,0 -Example1_ref 4847 . C . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:199,153,0,0 0/0:.:352:352:0:0%:199,153,0,0 -Example1_ref 4848 . A G . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:197,151,1,0 0/0:.:349:348:1:0.29%:197,151,1,0 -Example1_ref 4849 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:197,148,0,0 0/0:.:345:345:0:0%:197,148,0,0 -Example1_ref 4850 . C . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:198,145,0,0 0/0:.:343:343:0:0%:198,145,0,0 -Example1_ref 4851 . C . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:199,150,0,0 0/0:.:349:349:0:0%:199,150,0,0 -Example1_ref 4852 . G . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:199,149,0,0 0/0:.:348:348:0:0%:199,149,0,0 -Example1_ref 4853 . T C . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:341:1:0.29%:198,143,1,0 0/0:.:343:341:1:0.29%:198,143,1,0 -Example1_ref 4854 . C A . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:190,145,1,0 0/0:.:336:335:1:0.3%:190,145,1,0 -Example1_ref 4855 . A ACTGTCTC . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:352:1:0.28%:199,153,1,0 0/0:.:353:352:1:0.28%:199,153,1,0 -Example1_ref 4856 . G T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:204,153,1,0 0/0:.:358:357:1:0.28%:204,153,1,0 -Example1_ref 4857 . T G . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:204,153,0,1 0/0:.:358:357:1:0.28%:204,153,0,1 -Example1_ref 4858 . A G . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:371:1:0.27%:217,154,1,0 0/0:.:372:371:1:0.27%:217,154,1,0 -Example1_ref 4859 . G . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:214,155,0,0 0/0:.:369:369:0:0%:214,155,0,0 -Example1_ref 4860 . T . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:219,147,0,0 0/0:.:366:366:0:0%:219,147,0,0 -Example1_ref 4861 . C T . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:217,148,1,0 0/0:.:366:365:1:0.27%:217,148,1,0 -Example1_ref 4862 . A G . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:373:1:0.27%:220,153,0,1 0/0:.:374:373:1:0.27%:220,153,0,1 -Example1_ref 4863 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:220,150,0,0 0/0:.:370:370:0:0%:220,150,0,0 -Example1_ref 4864 . A . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:221,154,0,0 0/0:.:375:375:0:0%:221,154,0,0 -Example1_ref 4865 . C . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:223,144,0,0 0/0:.:367:367:0:0%:223,144,0,0 -Example1_ref 4866 . C . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:215,147,0,0 0/0:.:362:362:0:0%:215,147,0,0 -Example1_ref 4867 . T . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:221,153,0,0 0/0:.:374:374:0:0%:221,153,0,0 -Example1_ref 4868 . G . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:218,152,0,0 0/0:.:370:370:0:0%:218,152,0,0 -Example1_ref 4869 . T A . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:363:1:0.27%:219,144,0,1 0/0:.:364:363:1:0.27%:219,144,0,1 -Example1_ref 4870 . C . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:220,149,0,0 0/0:.:369:369:0:0%:220,149,0,0 -Example1_ref 4871 . G T . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:371:1:0.27%:215,156,1,0 0/0:.:372:371:1:0.27%:215,156,1,0 -Example1_ref 4872 . G A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:216,154,0,1 0/0:.:371:370:1:0.27%:216,154,0,1 -Example1_ref 4873 . A . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:224,160,0,0 0/0:.:384:384:0:0%:224,160,0,0 -Example1_ref 4874 . A . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:226,159,0,0 0/0:.:385:385:0:0%:226,159,0,0 -Example1_ref 4875 . C A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:373:1:0.27%:221,152,0,1 0/0:.:374:373:1:0.27%:221,152,0,1 -Example1_ref 4876 . A G . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:381:1:0.26%:222,159,1,0 0/0:.:382:381:1:0.26%:222,159,1,0 -Example1_ref 4877 . A T . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:1:0.26%:219,160,1,0 0/0:.:380:379:1:0.26%:219,160,1,0 -Example1_ref 4878 . G . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:223,159,0,0 0/0:.:382:382:0:0%:223,159,0,0 -Example1_ref 4879 . A . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:221,161,0,0 0/0:.:382:382:0:0%:221,161,0,0 -Example1_ref 4880 . A . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:378:0:0%:217,161,0,0 0/0:.:380:378:0:0%:217,161,0,0 -Example1_ref 4881 . A C . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:218,159,1,0 0/0:.:378:377:1:0.26%:218,159,1,0 -Example1_ref 4882 . G . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:221,158,0,0 0/0:.:379:379:0:0%:221,158,0,0 -Example1_ref 4883 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:222,161,0,0 0/0:.:383:383:0:0%:222,161,0,0 -Example1_ref 4884 . A . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:223,161,0,0 0/0:.:384:384:0:0%:223,161,0,0 -Example1_ref 4885 . G . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:0:0%:221,157,0,0 0/0:.:379:378:0:0%:221,157,0,0 -Example1_ref 4886 . A . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:223,154,0,0 0/0:.:377:377:0:0%:223,154,0,0 -Example1_ref 4887 . G T . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:221,156,1,0 0/0:.:378:377:1:0.26%:221,156,1,0 -Example1_ref 4888 . A . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:226,164,0,0 0/0:.:390:390:0:0%:226,164,0,0 -Example1_ref 4889 . C CA . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=5.7372E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:359:15:4.01%:209,150,9,6 0/0:.:382:359:15:4.01%:209,150,9,6 -Example1_ref 4890 . A . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:210,153,0,0 0/0:.:363:363:0:0%:210,153,0,0 -Example1_ref 4891 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:207,153,0,0 0/0:.:360:360:0:0%:207,153,0,0 -Example1_ref 4892 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:205,153,0,0 0/0:.:358:358:0:0%:205,153,0,0 -Example1_ref 4893 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:201,154,0,0 0/0:.:355:355:0:0%:201,154,0,0 -Example1_ref 4894 . A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:203,154,0,0 0/0:.:357:357:0:0%:203,154,0,0 -Example1_ref 4895 . A T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:204,153,0,1 0/0:.:358:357:1:0.28%:204,153,0,1 -Example1_ref 4896 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:195,147,0,0 0/0:.:342:342:0:0%:195,147,0,0 -Example1_ref 4897 . G A . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:364:1:0.27%:213,151,0,1 0/0:.:367:364:1:0.27%:213,151,0,1 -Example1_ref 4898 . T . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:212,155,0,0 0/0:.:367:367:0:0%:212,155,0,0 -Example1_ref 4899 . C . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:202,151,0,0 0/0:.:353:353:0:0%:202,151,0,0 -Example1_ref 4900 . A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:200,157,0,0 0/0:.:357:357:0:0%:200,157,0,0 -Example1_ref 4901 . A . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:206,157,0,0 0/0:.:363:363:0:0%:206,157,0,0 -Example1_ref 4902 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:198,157,0,0 0/0:.:355:355:0:0%:198,157,0,0 -Example1_ref 4903 . T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:200,156,0,0 0/0:.:356:356:0:0%:200,156,0,0 -Example1_ref 4904 . A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:200,156,0,0 0/0:.:356:356:0:0%:200,156,0,0 -Example1_ref 4905 . G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:199,158,0,0 0/0:.:357:357:0:0%:199,158,0,0 -Example1_ref 4906 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:201,157,0,0 0/0:.:358:358:0:0%:201,157,0,0 -Example1_ref 4907 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:204,158,0,0 0/0:.:362:362:0:0%:204,158,0,0 -Example1_ref 4908 . G A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:195,159,0,1 0/0:.:355:354:1:0.28%:195,159,0,1 -Example1_ref 4909 . A G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:200,156,1,0 0/0:.:357:356:1:0.28%:200,156,1,0 -Example1_ref 4910 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:197,158,0,0 0/0:.:355:355:0:0%:197,158,0,0 -Example1_ref 4911 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:197,158,0,0 0/0:.:355:355:0:0%:197,158,0,0 -Example1_ref 4912 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:196,158,0,0 0/0:.:354:354:0:0%:196,158,0,0 -Example1_ref 4913 . C A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:191,160,1,0 0/0:.:352:351:1:0.28%:191,160,1,0 -Example1_ref 4914 . A . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:198,165,0,0 0/0:.:363:363:0:0%:198,165,0,0 -Example1_ref 4915 . A . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:197,171,0,0 0/0:.:368:368:0:0%:197,171,0,0 -Example1_ref 4916 . A . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:364:0:0%:194,170,0,0 0/0:.:364:364:0:0%:194,170,0,0 -Example1_ref 4917 . A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:200,170,0,0 0/0:.:370:370:0:0%:200,170,0,0 -Example1_ref 4918 . C . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:195,174,0,0 0/0:.:369:369:0:0%:195,174,0,0 -Example1_ref 4919 . A AG . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:366:1:0.27%:194,172,0,1 0/0:.:367:366:1:0.27%:194,172,0,1 -Example1_ref 4920 . G . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:193,172,0,0 0/0:.:365:365:0:0%:193,172,0,0 -Example1_ref 4921 . A . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:195,178,0,0 0/0:.:373:373:0:0%:195,178,0,0 -Example1_ref 4922 . A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:190,180,0,0 0/0:.:370:370:0:0%:190,180,0,0 -Example1_ref 4923 . A . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:192,183,0,0 0/0:.:375:375:0:0%:192,183,0,0 -Example1_ref 4924 . G T . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:371:1:0.27%:192,179,1,0 0/0:.:372:371:1:0.27%:192,179,1,0 -Example1_ref 4925 . C . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:182,181,0,0 0/0:.:363:363:0:0%:182,181,0,0 -Example1_ref 4926 . A . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:201,183,0,0 0/0:.:384:384:0:0%:201,183,0,0 -Example1_ref 4927 . T . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:194,173,0,0 0/0:.:367:367:0:0%:194,173,0,0 -Example1_ref 4928 . A T . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:381:1:0.26%:198,183,1,0 0/0:.:382:381:1:0.26%:198,183,1,0 -Example1_ref 4929 . G . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:179,181,0,0 0/0:.:360:360:0:0%:179,181,0,0 -Example1_ref 4930 . A . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:197,182,0,0 0/0:.:379:379:0:0%:197,182,0,0 -Example1_ref 4931 . A . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:193,184,0,0 0/0:.:377:377:0:0%:193,184,0,0 -Example1_ref 4932 . C A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:367:1:0.27%:187,180,1,0 0/0:.:369:367:1:0.27%:187,180,1,0 -Example1_ref 4933 . AC A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:368:1:0.27%:192,176,1,0 0/0:.:370:368:1:0.27%:192,176,1,0 -Example1_ref 4934 . C . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:184,175,0,0 0/0:.:359:359:0:0%:184,175,0,0 -Example1_ref 4935 . C . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:179,177,0,0 0/0:.:356:356:0:0%:179,177,0,0 -Example1_ref 4936 . A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:189,181,0,0 0/0:.:370:370:0:0%:189,181,0,0 -Example1_ref 4937 . G . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:183,182,0,0 0/0:.:365:365:0:0%:183,182,0,0 -Example1_ref 4938 . A . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:0:0%:190,184,0,0 0/0:.:375:374:0:0%:190,184,0,0 -Example1_ref 4939 . A . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:0:0%:191,186,0,0 0/0:.:378:377:0:0%:191,186,0,0 -Example1_ref 4940 . C A . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=6.88E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:377:2:0.53%:193,184,1,1 0/0:.:379:377:2:0.53%:193,184,1,1 -Example1_ref 4941 . A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:197,190,0,0 0/0:.:387:387:0:0%:197,190,0,0 -Example1_ref 4942 . A . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:198,191,0,0 0/0:.:389:389:0:0%:198,191,0,0 -Example1_ref 4943 . C . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:0:0%:193,186,0,0 0/0:.:380:379:0:0%:193,186,0,0 -Example1_ref 4944 . A . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:192,198,0,0 0/0:.:390:390:0:0%:192,198,0,0 -Example1_ref 4945 . A G . PASS DP=782;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:390:1:0.26%:190,200,0,1 0/0:.:391:390:1:0.26%:190,200,0,1 -Example1_ref 4946 . G A . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:372:1:0.27%:178,194,1,0 0/0:.:373:372:1:0.27%:178,194,1,0 -Example1_ref 4947 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:187,196,0,0 0/0:.:383:383:0:0%:187,196,0,0 -Example1_ref 4948 . T A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=6.375E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:348:4:1.14%:161,187,3,1 0/0:.:352:348:4:1.14%:161,187,3,1 -Example1_ref 4949 . C A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:373:1:0.27%:181,192,1,0 0/0:.:374:373:1:0.27%:181,192,1,0 -Example1_ref 4950 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:0:0%:187,195,0,0 0/0:.:383:382:0:0%:187,195,0,0 -Example1_ref 4951 . A . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:0:0%:182,196,0,0 0/0:.:379:378:0:0%:182,196,0,0 -Example1_ref 4952 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:0:0%:187,195,0,0 0/0:.:383:382:0:0%:187,195,0,0 -Example1_ref 4953 . A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:174,195,0,0 0/0:.:369:369:0:0%:174,195,0,0 -Example1_ref 4954 . C . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:177,193,0,0 0/0:.:370:370:0:0%:177,193,0,0 -Example1_ref 4955 . A . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:179,188,0,0 0/0:.:367:367:0:0%:179,188,0,0 -Example1_ref 4956 . T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:172,178,0,0 0/0:.:350:350:0:0%:172,178,0,0 -Example1_ref 4957 . C A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:353:1:0.28%:166,187,0,1 0/0:.:354:353:1:0.28%:166,187,0,1 -Example1_ref 4958 . C T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:345:1:0.29%:161,184,0,1 0/0:.:346:345:1:0.29%:161,184,0,1 -Example1_ref 4959 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:174,186,0,0 0/0:.:360:360:0:0%:174,186,0,0 -Example1_ref 4960 . A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:177,180,0,0 0/0:.:357:357:0:0%:177,180,0,0 -Example1_ref 4961 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:160,176,0,0 0/0:.:336:336:0:0%:160,176,0,0 -Example1_ref 4962 . C . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:167,182,0,0 0/0:.:349:349:0:0%:167,182,0,0 -Example1_ref 4963 . C A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:320:1:0.31%:143,177,1,0 0/0:.:322:320:1:0.31%:143,177,1,0 -Example1_ref 4964 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:339:0:0%:159,180,0,0 0/0:.:341:339:0:0%:159,180,0,0 -Example1_ref 4965 . C . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:156,178,0,0 0/0:.:334:334:0:0%:156,178,0,0 -Example1_ref 4966 . T C . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=6.881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:310:2:0.64%:138,172,2,0 0/0:.:313:310:2:0.64%:138,172,2,0 -Example1_ref 4967 . C . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:149,177,0,0 0/0:.:326:326:0:0%:149,177,0,0 -Example1_ref 4968 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:142,181,0,0 0/0:.:323:323:0:0%:142,181,0,0 -Example1_ref 4969 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:136,180,0,0 0/0:.:316:316:0:0%:136,180,0,0 -Example1_ref 4970 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:136,182,0,0 0/0:.:318:318:0:0%:136,182,0,0 -Example1_ref 4971 . A . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:140,179,0,0 0/0:.:319:319:0:0%:140,179,0,0 -Example1_ref 4972 . C CA . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:1:0.31%:139,179,0,1 0/0:.:319:318:1:0.31%:139,179,0,1 -Example1_ref 4973 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:140,176,0,0 0/0:.:316:316:0:0%:140,176,0,0 -Example1_ref 4974 . A . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:140,181,0,0 0/0:.:321:321:0:0%:140,181,0,0 -Example1_ref 4975 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:138,175,0,0 0/0:.:313:313:0:0%:138,175,0,0 -Example1_ref 4976 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:135,180,0,0 0/0:.:315:315:0:0%:135,180,0,0 -Example1_ref 4977 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:128,183,0,0 0/0:.:311:311:0:0%:128,183,0,0 -Example1_ref 4978 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:129,180,0,0 0/0:.:309:309:0:0%:129,180,0,0 -Example1_ref 4979 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:119,178,0,0 0/0:.:297:297:0:0%:119,178,0,0 -Example1_ref 4980 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:123,186,0,0 0/0:.:309:309:0:0%:123,186,0,0 -Example1_ref 4981 . C A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:121,189,1,0 0/0:.:311:310:1:0.32%:121,189,1,0 -Example1_ref 4982 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:126,189,0,0 0/0:.:315:315:0:0%:126,189,0,0 -Example1_ref 4983 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:121,190,0,0 0/0:.:311:311:0:0%:121,190,0,0 -Example1_ref 4984 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:125,191,0,0 0/0:.:316:316:0:0%:125,191,0,0 -Example1_ref 4985 . A G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=6.881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:310:2:0.64%:123,187,0,2 0/0:.:312:310:2:0.64%:123,187,0,2 -Example1_ref 4986 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:116,188,0,0 0/0:.:304:304:0:0%:116,188,0,0 -Example1_ref 4987 . C . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:120,187,0,0 0/0:.:307:307:0:0%:120,187,0,0 -Example1_ref 4988 . G . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:103,187,0,0 0/0:.:290:290:0:0%:103,187,0,0 -Example1_ref 4989 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:123,187,0,0 0/0:.:310:310:0:0%:123,187,0,0 -Example1_ref 4990 . C . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:117,182,0,0 0/0:.:299:299:0:0%:117,182,0,0 -Example1_ref 4991 . C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:109,188,0,0 0/0:.:297:297:0:0%:109,188,0,0 -Example1_ref 4992 . G C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:103,188,0,1 0/0:.:292:291:1:0.34%:103,188,0,1 -Example1_ref 4993 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:94,188,0,0 0/0:.:282:282:0:0%:94,188,0,0 -Example1_ref 4994 . C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:107,185,0,0 0/0:.:292:292:0:0%:107,185,0,0 -Example1_ref 4995 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:110,193,0,0 0/0:.:303:303:0:0%:110,193,0,0 -Example1_ref 4996 . A ACTGTC . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:1:0.33%:113,193,1,0 0/0:.:307:306:1:0.33%:113,193,1,0 -Example1_ref 4997 . C . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:116,192,0,0 0/0:.:308:308:0:0%:116,192,0,0 -Example1_ref 4998 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:120,193,0,0 0/0:.:313:313:0:0%:120,193,0,0 -Example1_ref 4999 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:122,187,0,0 0/0:.:309:309:0:0%:122,187,0,0 -Example1_ref 5000 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:314:0:0%:126,188,0,0 0/0:.:316:314:0:0%:126,188,0,0 -Example1_ref 5001 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:126,192,0,0 0/0:.:318:318:0:0%:126,192,0,0 -Example1_ref 5002 . C . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:121,194,0,0 0/0:.:315:315:0:0%:121,194,0,0 -Example1_ref 5003 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:117,194,0,0 0/0:.:311:311:0:0%:117,194,0,0 -Example1_ref 5004 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:117,192,0,0 0/0:.:309:309:0:0%:117,192,0,0 -Example1_ref 5005 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:106,190,0,0 0/0:.:296:296:0:0%:106,190,0,0 -Example1_ref 5006 . C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:109,183,0,0 0/0:.:292:292:0:0%:109,183,0,0 -Example1_ref 5007 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:116,193,0,0 0/0:.:309:309:0:0%:116,193,0,0 -Example1_ref 5008 . C . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:119,187,0,0 0/0:.:306:306:0:0%:119,187,0,0 -Example1_ref 5009 . C . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:113,185,0,0 0/0:.:298:298:0:0%:113,185,0,0 -Example1_ref 5010 . G A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:103,188,0,1 0/0:.:292:291:1:0.34%:103,188,0,1 -Example1_ref 5011 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:114,193,0,0 0/0:.:307:307:0:0%:114,193,0,0 -Example1_ref 5012 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:119,197,0,0 0/0:.:316:316:0:0%:119,197,0,0 -Example1_ref 5013 . C . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:118,198,0,0 0/0:.:316:316:0:0%:118,198,0,0 -Example1_ref 5014 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:119,191,0,0 0/0:.:310:310:0:0%:119,191,0,0 -Example1_ref 5015 . C A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:117,179,0,1 0/0:.:297:296:1:0.34%:117,179,0,1 -Example1_ref 5016 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:117,187,0,0 0/0:.:304:304:0:0%:117,187,0,0 -Example1_ref 5017 . A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:119,187,0,0 0/0:.:306:306:0:0%:119,187,0,0 -Example1_ref 5018 . T C . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:110,191,1,0 0/0:.:302:301:1:0.33%:110,191,1,0 -Example1_ref 5019 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:105,188,0,0 0/0:.:293:293:0:0%:105,188,0,0 -Example1_ref 5020 . C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:108,184,0,0 0/0:.:292:292:0:0%:108,184,0,0 -Example1_ref 5021 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:110,183,0,0 0/0:.:293:293:0:0%:110,183,0,0 -Example1_ref 5022 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:114,189,0,0 0/0:.:303:303:0:0%:114,189,0,0 -Example1_ref 5023 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:111,188,0,0 0/0:.:299:299:0:0%:111,188,0,0 -Example1_ref 5024 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:116,179,0,0 0/0:.:295:295:0:0%:116,179,0,0 -Example1_ref 5025 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:112,176,0,0 0/0:.:288:288:0:0%:112,176,0,0 -Example1_ref 5026 . T A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:114,176,1,0 0/0:.:291:290:1:0.34%:114,176,1,0 -Example1_ref 5027 . C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:118,174,0,0 0/0:.:292:292:0:0%:118,174,0,0 -Example1_ref 5028 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:119,176,0,0 0/0:.:295:295:0:0%:119,176,0,0 -Example1_ref 5029 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:120,178,0,0 0/0:.:298:298:0:0%:120,178,0,0 -Example1_ref 5030 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:118,173,0,0 0/0:.:291:291:0:0%:118,173,0,0 -Example1_ref 5031 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:117,179,0,0 0/0:.:296:296:0:0%:117,179,0,0 -Example1_ref 5032 . T TC . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:119,173,1,0 0/0:.:293:292:1:0.34%:119,173,1,0 -Example1_ref 5033 . T A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:115,170,1,0 0/0:.:286:285:1:0.35%:115,170,1,0 -Example1_ref 5034 . G . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:106,171,0,0 0/0:.:277:277:0:0%:106,171,0,0 -Example1_ref 5035 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:117,173,0,0 0/0:.:290:290:0:0%:117,173,0,0 -Example1_ref 5036 . T A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:113,176,0,1 0/0:.:290:289:1:0.34%:113,176,0,1 -Example1_ref 5037 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:116,177,0,0 0/0:.:293:293:0:0%:116,177,0,0 -Example1_ref 5038 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:116,175,0,0 0/0:.:291:291:0:0%:116,175,0,0 -Example1_ref 5039 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:115,173,0,0 0/0:.:288:288:0:0%:115,173,0,0 -Example1_ref 5040 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:113,175,0,0 0/0:.:288:288:0:0%:113,175,0,0 -Example1_ref 5041 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:113,179,0,0 0/0:.:292:292:0:0%:113,179,0,0 -Example1_ref 5042 . T TA . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:280:1:0.36%:110,170,1,0 0/0:.:281:280:1:0.36%:110,170,1,0 -Example1_ref 5043 . C A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:108,177,0,1 0/0:.:286:285:1:0.35%:108,177,0,1 -Example1_ref 5044 . A T . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:108,178,0,1 0/0:.:287:286:1:0.35%:108,178,0,1 -Example1_ref 5045 . C . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:106,176,0,0 0/0:.:282:282:0:0%:106,176,0,0 -Example1_ref 5046 . A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:105,178,0,0 0/0:.:283:283:0:0%:105,178,0,0 -Example1_ref 5047 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:109,178,0,0 0/0:.:287:287:0:0%:109,178,0,0 -Example1_ref 5048 . C . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:99,180,0,0 0/0:.:279:279:0:0%:99,180,0,0 -Example1_ref 5049 . C . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:98,180,0,0 0/0:.:278:278:0:0%:98,180,0,0 -Example1_ref 5050 . A G . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:101,175,0,1 0/0:.:277:276:1:0.36%:101,175,0,1 -Example1_ref 5051 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:100,171,0,0 0/0:.:271:271:0:0%:100,171,0,0 -Example1_ref 5052 . G . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:102,177,0,0 0/0:.:279:279:0:0%:102,177,0,0 -Example1_ref 5053 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:105,175,0,0 0/0:.:280:280:0:0%:105,175,0,0 -Example1_ref 5054 . T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:104,173,0,0 0/0:.:277:277:0:0%:104,173,0,0 -Example1_ref 5055 . C . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:277:0:0%:101,176,0,0 0/0:.:279:277:0:0%:101,176,0,0 -Example1_ref 5056 . A AG . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:104,170,0,1 0/0:.:275:274:1:0.36%:104,170,0,1 -Example1_ref 5057 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:104,168,0,0 0/0:.:272:272:0:0%:104,168,0,0 -Example1_ref 5058 . G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:99,168,0,0 0/0:.:267:267:0:0%:99,168,0,0 -Example1_ref 5059 . G T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:95,171,1,0 0/0:.:267:266:1:0.37%:95,171,1,0 -Example1_ref 5060 . C A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:105,169,0,1 0/0:.:275:274:1:0.36%:105,169,0,1 -Example1_ref 5061 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:105,168,0,0 0/0:.:273:273:0:0%:105,168,0,0 -Example1_ref 5062 . TCA T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:103,167,0,1 0/0:.:271:270:1:0.37%:103,167,0,1 -Example1_ref 5063 . C . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:103,166,0,0 0/0:.:269:269:0:0%:103,166,0,0 -Example1_ref 5064 . A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:106,170,0,0 0/0:.:276:276:0:0%:106,170,0,0 -Example1_ref 5065 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:105,168,0,0 0/0:.:273:273:0:0%:105,168,0,0 -Example1_ref 5066 . A AG . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:107,163,0,1 0/0:.:271:270:1:0.37%:107,163,0,1 -Example1_ref 5067 . T C . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:103,163,0,1 0/0:.:267:266:1:0.37%:103,163,0,1 -Example1_ref 5068 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:103,157,0,0 0/0:.:260:260:0:0%:103,157,0,0 -Example1_ref 5069 . G T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:95,162,1,0 0/0:.:258:257:1:0.39%:95,162,1,0 -Example1_ref 5070 . C A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=6.8823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:255:2:0.78%:100,155,0,2 0/0:.:257:255:2:0.78%:100,155,0,2 -Example1_ref 5071 . C . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:106,161,0,0 0/0:.:267:267:0:0%:106,161,0,0 -Example1_ref 5072 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:105,164,0,0 0/0:.:269:269:0:0%:105,164,0,0 -Example1_ref 5073 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:102,164,0,0 0/0:.:266:266:0:0%:102,164,0,0 -Example1_ref 5074 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:103,165,0,0 0/0:.:268:268:0:0%:103,165,0,0 -Example1_ref 5075 . T . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:104,164,0,0 0/0:.:268:268:0:0%:104,164,0,0 -Example1_ref 5076 . A C . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:103,165,1,0 0/0:.:269:268:1:0.37%:103,165,1,0 -Example1_ref 5077 . G . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:100,166,0,0 0/0:.:266:266:0:0%:100,166,0,0 -Example1_ref 5078 . A . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:103,162,0,0 0/0:.:265:265:0:0%:103,162,0,0 -Example1_ref 5079 . C . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:103,160,0,0 0/0:.:263:263:0:0%:103,160,0,0 -Example1_ref 5080 . A AG . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:103,159,0,1 0/0:.:263:262:1:0.38%:103,159,0,1 -Example1_ref 5081 . T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:107,159,0,0 0/0:.:266:266:0:0%:107,159,0,0 -Example1_ref 5082 . C . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:104,166,0,0 0/0:.:270:270:0:0%:104,166,0,0 -Example1_ref 5083 . A G . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:103,164,0,1 0/0:.:268:267:1:0.37%:103,164,0,1 -Example1_ref 5084 . CA C . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:107,160,0,1 0/0:.:268:267:1:0.37%:107,160,0,1 -Example1_ref 5085 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:108,165,0,0 0/0:.:273:273:0:0%:108,165,0,0 -Example1_ref 5086 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:108,161,0,0 0/0:.:269:269:0:0%:108,161,0,0 -Example1_ref 5087 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:106,162,0,0 0/0:.:268:268:0:0%:106,162,0,0 -Example1_ref 5088 . A G . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:266:1:0.37%:106,160,0,1 0/0:.:268:266:1:0.37%:106,160,0,1 -Example1_ref 5089 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:106,167,0,0 0/0:.:273:273:0:0%:106,167,0,0 -Example1_ref 5090 . T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:106,161,0,0 0/0:.:267:267:0:0%:106,161,0,0 -Example1_ref 5091 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:105,166,0,0 0/0:.:271:271:0:0%:105,166,0,0 -Example1_ref 5092 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:106,167,0,0 0/0:.:273:273:0:0%:106,167,0,0 -Example1_ref 5093 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:103,165,0,0 0/0:.:268:268:0:0%:103,165,0,0 -Example1_ref 5094 . G . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:100,165,0,0 0/0:.:265:265:0:0%:100,165,0,0 -Example1_ref 5095 . C . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:105,163,0,0 0/0:.:268:268:0:0%:105,163,0,0 -Example1_ref 5096 . A G . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:105,165,1,0 0/0:.:271:270:1:0.37%:105,165,1,0 -Example1_ref 5097 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:110,165,0,0 0/0:.:275:275:0:0%:110,165,0,0 -Example1_ref 5098 . G . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:108,162,0,0 0/0:.:270:270:0:0%:108,162,0,0 -Example1_ref 5099 . T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:113,164,0,0 0/0:.:277:277:0:0%:113,164,0,0 -Example1_ref 5100 . A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:109,165,0,0 0/0:.:274:274:0:0%:109,165,0,0 -Example1_ref 5101 . G . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:111,158,0,0 0/0:.:269:269:0:0%:111,158,0,0 -Example1_ref 5102 . G GTGC . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:272:1:0.37%:107,165,1,0 0/0:.:273:272:1:0.37%:107,165,1,0 -Example1_ref 5103 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:112,159,0,0 0/0:.:271:271:0:0%:112,159,0,0 -Example1_ref 5104 . G . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:109,157,0,0 0/0:.:266:266:0:0%:109,157,0,0 -Example1_ref 5105 . T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:112,154,0,0 0/0:.:266:266:0:0%:112,154,0,0 -Example1_ref 5106 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:114,156,0,0 0/0:.:270:270:0:0%:114,156,0,0 -Example1_ref 5107 . T C . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:117,160,1,0 0/0:.:278:277:1:0.36%:117,160,1,0 -Example1_ref 5108 . T . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:117,156,0,0 0/0:.:273:273:0:0%:117,156,0,0 -Example1_ref 5109 . G T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=6.8822E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:260:2:0.76%:107,153,2,0 0/0:.:263:260:2:0.76%:107,153,2,0 -Example1_ref 5110 . G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:108,151,0,0 0/0:.:259:259:0:0%:108,151,0,0 -Example1_ref 5111 . T G . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:120,153,0,1 0/0:.:274:273:1:0.36%:120,153,0,1 -Example1_ref 5112 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:0:0%:113,144,0,0 0/0:.:258:257:0:0%:113,144,0,0 -Example1_ref 5113 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:115,155,0,0 0/0:.:270:270:0:0%:115,155,0,0 -Example1_ref 5114 . A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:0:0%:118,157,0,0 0/0:.:276:275:0:0%:118,157,0,0 -Example1_ref 5115 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:119,156,0,0 0/0:.:275:275:0:0%:119,156,0,0 -Example1_ref 5116 . A AG . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:119,157,0,1 0/0:.:277:276:1:0.36%:119,157,0,1 -Example1_ref 5117 . GT G . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:120,154,0,1 0/0:.:275:274:1:0.36%:120,154,0,1 -Example1_ref 5118 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:127,152,0,0 0/0:.:280:279:0:0%:127,152,0,0 -Example1_ref 5119 . C A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:125,152,0,1 0/0:.:278:277:1:0.36%:125,152,0,1 -Example1_ref 5120 . C . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:122,159,0,0 0/0:.:281:281:0:0%:122,159,0,0 -Example1_ref 5121 . T G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:280:1:0.36%:123,157,0,1 0/0:.:281:280:1:0.36%:123,157,0,1 -Example1_ref 5122 . A G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:126,160,0,1 0/0:.:287:286:1:0.35%:126,160,0,1 -Example1_ref 5123 . A AGG . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:119,158,1,0 0/0:.:278:277:1:0.36%:119,158,1,0 -Example1_ref 5124 . G . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:123,153,0,0 0/0:.:276:276:0:0%:123,153,0,0 -Example1_ref 5125 . G GGCT . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:275:1:0.36%:121,154,1,0 0/0:.:277:275:1:0.36%:121,154,1,0 -Example1_ref 5126 . G . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:125,149,0,0 0/0:.:274:274:0:0%:125,149,0,0 -Example1_ref 5127 . T . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:130,134,0,0 0/0:.:264:264:0:0%:130,134,0,0 -Example1_ref 5128 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:126,134,0,0 0/0:.:260:260:0:0%:126,134,0,0 -Example1_ref 5129 . T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:130,133,0,0 0/0:.:263:263:0:0%:130,133,0,0 -Example1_ref 5130 . G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:125,134,0,0 0/0:.:259:259:0:0%:125,134,0,0 -Example1_ref 5131 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:128,131,0,0 0/0:.:259:259:0:0%:128,131,0,0 -Example1_ref 5132 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:127,132,0,0 0/0:.:259:259:0:0%:127,132,0,0 -Example1_ref 5133 . G . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:124,133,0,0 0/0:.:257:257:0:0%:124,133,0,0 -Example1_ref 5134 . A G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:121,124,1,0 0/0:.:246:245:1:0.41%:121,124,1,0 -Example1_ref 5135 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:125,120,0,0 0/0:.:245:245:0:0%:125,120,0,0 -Example1_ref 5136 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:124,123,0,0 0/0:.:247:247:0:0%:124,123,0,0 -Example1_ref 5137 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:125,123,0,0 0/0:.:248:248:0:0%:125,123,0,0 -Example1_ref 5138 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:124,123,0,0 0/0:.:247:247:0:0%:124,123,0,0 -Example1_ref 5139 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:126,125,0,0 0/0:.:251:251:0:0%:126,125,0,0 -Example1_ref 5140 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:124,124,0,0 0/0:.:248:248:0:0%:124,124,0,0 -Example1_ref 5141 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:125,124,0,0 0/0:.:249:249:0:0%:125,124,0,0 -Example1_ref 5142 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:127,124,0,0 0/0:.:251:251:0:0%:127,124,0,0 -Example1_ref 5143 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:125,123,0,0 0/0:.:248:248:0:0%:125,123,0,0 -Example1_ref 5144 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:121,125,0,0 0/0:.:246:246:0:0%:121,125,0,0 -Example1_ref 5145 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:117,121,0,0 0/0:.:238:238:0:0%:117,121,0,0 -Example1_ref 5146 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:117,119,0,0 0/0:.:236:236:0:0%:117,119,0,0 -Example1_ref 5147 . T C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:245:1:0.41%:120,125,0,1 0/0:.:247:245:1:0.41%:120,125,0,1 -Example1_ref 5148 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:117,129,0,0 0/0:.:246:246:0:0%:117,129,0,0 -Example1_ref 5149 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:113,132,0,0 0/0:.:245:245:0:0%:113,132,0,0 -Example1_ref 5150 . A G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:116,129,0,1 0/0:.:246:245:1:0.41%:116,129,0,1 -Example1_ref 5151 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:118,131,0,0 0/0:.:249:249:0:0%:118,131,0,0 -Example1_ref 5152 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:116,130,0,0 0/0:.:246:246:0:0%:116,130,0,0 -Example1_ref 5153 . C . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:118,131,0,0 0/0:.:249:249:0:0%:118,131,0,0 -Example1_ref 5154 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:251:251:0:0%:119,132,0,0 -Example1_ref 5155 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:116,133,0,0 0/0:.:249:249:0:0%:116,133,0,0 -Example1_ref 5156 . G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:118,132,0,0 0/0:.:250:250:0:0%:118,132,0,0 -Example1_ref 5157 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:116,133,0,0 0/0:.:249:249:0:0%:116,133,0,0 -Example1_ref 5158 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:119,133,0,0 0/0:.:252:252:0:0%:119,133,0,0 -Example1_ref 5159 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:122,133,0,0 0/0:.:255:255:0:0%:122,133,0,0 -Example1_ref 5160 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:123,135,0,0 0/0:.:258:258:0:0%:123,135,0,0 -Example1_ref 5161 . C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:121,134,0,0 0/0:.:255:255:0:0%:121,134,0,0 -Example1_ref 5162 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:121,136,0,0 0/0:.:257:257:0:0%:121,136,0,0 -Example1_ref 5163 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:121,135,0,0 0/0:.:256:256:0:0%:121,135,0,0 -Example1_ref 5164 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:121,134,0,0 0/0:.:255:255:0:0%:121,134,0,0 -Example1_ref 5165 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:121,131,0,0 0/0:.:252:252:0:0%:121,131,0,0 -Example1_ref 5166 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:120,128,0,0 0/0:.:248:248:0:0%:120,128,0,0 -Example1_ref 5167 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:120,130,0,0 0/0:.:250:250:0:0%:120,130,0,0 -Example1_ref 5168 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:122,123,0,0 0/0:.:245:245:0:0%:122,123,0,0 -Example1_ref 5169 . G T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:114,121,1,0 0/0:.:236:235:1:0.42%:114,121,1,0 -Example1_ref 5170 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:121,123,0,0 0/0:.:244:244:0:0%:121,123,0,0 -Example1_ref 5171 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:119,121,0,0 0/0:.:240:240:0:0%:119,121,0,0 -Example1_ref 5172 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:239:239:0:0%:120,119,0,0 -Example1_ref 5173 . C A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:121,117,1,0 0/0:.:239:238:1:0.42%:121,117,1,0 -Example1_ref 5174 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:119,117,0,0 0/0:.:236:236:0:0%:119,117,0,0 -Example1_ref 5175 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:121,119,0,0 0/0:.:240:240:0:0%:121,119,0,0 -Example1_ref 5176 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:120,122,0,0 0/0:.:242:242:0:0%:120,122,0,0 -Example1_ref 5177 . T A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:123,121,1,0 0/0:.:245:244:1:0.41%:123,121,1,0 -Example1_ref 5178 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:123,125,0,0 0/0:.:248:248:0:0%:123,125,0,0 -Example1_ref 5179 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:121,119,0,0 0/0:.:240:240:0:0%:121,119,0,0 -Example1_ref 5180 . C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:120,121,0,0 0/0:.:241:241:0:0%:120,121,0,0 -Example1_ref 5181 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:124,121,0,0 0/0:.:245:245:0:0%:124,121,0,0 -Example1_ref 5182 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:119,122,0,0 0/0:.:241:241:0:0%:119,122,0,0 -Example1_ref 5183 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:120,121,0,0 0/0:.:241:241:0:0%:120,121,0,0 -Example1_ref 5184 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:119,120,0,0 0/0:.:239:239:0:0%:119,120,0,0 -Example1_ref 5185 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:115,122,0,0 0/0:.:237:237:0:0%:115,122,0,0 -Example1_ref 5186 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:120,120,0,0 0/0:.:240:240:0:0%:120,120,0,0 -Example1_ref 5187 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:115,120,0,0 0/0:.:235:235:0:0%:115,120,0,0 -Example1_ref 5188 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:0:0%:108,120,0,0 0/0:.:229:228:0:0%:108,120,0,0 -Example1_ref 5189 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:105,118,0,0 0/0:.:223:223:0:0%:105,118,0,0 -Example1_ref 5190 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:107,120,0,0 0/0:.:227:227:0:0%:107,120,0,0 -Example1_ref 5191 . G T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=6.8832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:229:2:0.87%:106,123,2,0 0/0:.:231:229:2:0.87%:106,123,2,0 -Example1_ref 5192 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:110,116,0,0 0/0:.:226:226:0:0%:110,116,0,0 -Example1_ref 5193 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:231:231:0:0%:114,117,0,0 -Example1_ref 5194 . T C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:113,116,1,0 0/0:.:230:229:1:0.43%:113,116,1,0 -Example1_ref 5195 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:111,118,0,0 0/0:.:229:229:0:0%:111,118,0,0 -Example1_ref 5196 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:236:236:0:0%:114,122,0,0 -Example1_ref 5197 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:112,121,0,0 0/0:.:233:233:0:0%:112,121,0,0 -Example1_ref 5198 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:111,122,0,0 0/0:.:233:233:0:0%:111,122,0,0 -Example1_ref 5199 . C . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:108,120,0,0 0/0:.:228:228:0:0%:108,120,0,0 -Example1_ref 5200 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:110,114,0,0 0/0:.:224:224:0:0%:110,114,0,0 -Example1_ref 5201 . C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:110,112,0,0 0/0:.:222:222:0:0%:110,112,0,0 -Example1_ref 5202 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:0:0%:105,108,0,0 0/0:.:214:213:0:0%:105,108,0,0 -Example1_ref 5203 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:109,112,0,0 0/0:.:221:221:0:0%:109,112,0,0 -Example1_ref 5204 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:106,110,0,0 0/0:.:216:216:0:0%:106,110,0,0 -Example1_ref 5205 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:107,110,0,0 0/0:.:217:217:0:0%:107,110,0,0 -Example1_ref 5206 . G . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:102,109,0,0 0/0:.:211:211:0:0%:102,109,0,0 -Example1_ref 5207 . G T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:99,109,1,0 0/0:.:209:208:1:0.48%:99,109,1,0 -Example1_ref 5208 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:103,107,0,0 0/0:.:210:210:0:0%:103,107,0,0 -Example1_ref 5209 . G T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:94,107,1,0 0/0:.:202:201:1:0.5%:94,107,1,0 -Example1_ref 5210 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:104,108,0,0 0/0:.:212:212:0:0%:104,108,0,0 -Example1_ref 5211 . C A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=6.8842E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:204:2:0.97%:104,100,0,2 0/0:.:206:204:2:0.97%:104,100,0,2 -Example1_ref 5212 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:97,108,0,0 0/0:.:205:205:0:0%:97,108,0,0 -Example1_ref 5213 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:208:208:0:0%:100,108,0,0 -Example1_ref 5214 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:98,105,0,0 0/0:.:203:203:0:0%:98,105,0,0 -Example1_ref 5215 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:98,108,0,0 0/0:.:206:206:0:0%:98,108,0,0 -Example1_ref 5216 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:97,108,0,0 0/0:.:205:205:0:0%:97,108,0,0 -Example1_ref 5217 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:91,108,0,0 0/0:.:199:199:0:0%:91,108,0,0 -Example1_ref 5218 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:95,106,0,0 0/0:.:201:201:0:0%:95,106,0,0 -Example1_ref 5219 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:94,104,0,0 0/0:.:198:198:0:0%:94,104,0,0 -Example1_ref 5220 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:0:0%:94,105,0,0 0/0:.:200:199:0:0%:94,105,0,0 -Example1_ref 5221 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:93,106,0,0 0/0:.:199:199:0:0%:93,106,0,0 -Example1_ref 5222 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:92,106,0,0 0/0:.:198:198:0:0%:92,106,0,0 -Example1_ref 5223 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:91,106,0,0 0/0:.:197:197:0:0%:91,106,0,0 -Example1_ref 5224 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:91,104,0,0 0/0:.:195:195:0:0%:91,104,0,0 -Example1_ref 5225 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:91,102,0,0 0/0:.:193:193:0:0%:91,102,0,0 -Example1_ref 5226 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:91,102,0,0 0/0:.:193:193:0:0%:91,102,0,0 -Example1_ref 5227 . T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:94,101,0,0 0/0:.:195:195:0:0%:94,101,0,0 -Example1_ref 5228 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:94,104,0,0 0/0:.:198:198:0:0%:94,104,0,0 -Example1_ref 5229 . C . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:92,101,0,0 0/0:.:193:193:0:0%:92,101,0,0 -Example1_ref 5230 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:92,102,0,0 0/0:.:194:194:0:0%:92,102,0,0 -Example1_ref 5231 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:90,102,0,0 0/0:.:192:192:0:0%:90,102,0,0 -Example1_ref 5232 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:94,104,0,0 0/0:.:198:198:0:0%:94,104,0,0 -Example1_ref 5233 . AG A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:97,100,0,1 0/0:.:198:197:1:0.51%:97,100,0,1 -Example1_ref 5234 . G A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:95,97,0,1 0/0:.:193:192:1:0.52%:95,97,0,1 -Example1_ref 5235 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:97,99,0,0 0/0:.:196:196:0:0%:97,99,0,0 -Example1_ref 5236 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:197:197:0:0%:97,100,0,0 -Example1_ref 5237 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:90,100,0,0 0/0:.:190:190:0:0%:90,100,0,0 -Example1_ref 5238 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:91,98,0,0 0/0:.:189:189:0:0%:91,98,0,0 -Example1_ref 5239 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:91,99,0,0 0/0:.:190:190:0:0%:91,99,0,0 -Example1_ref 5240 . T C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:91,98,1,0 0/0:.:190:189:1:0.53%:91,98,1,0 -Example1_ref 5241 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:88,97,0,0 0/0:.:185:185:0:0%:88,97,0,0 -Example1_ref 5242 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:83,96,0,0 0/0:.:179:179:0:0%:83,96,0,0 -Example1_ref 5243 . A T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:84,99,1,0 0/0:.:184:183:1:0.54%:84,99,1,0 -Example1_ref 5244 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:180:180:0:0%:85,95,0,0 -Example1_ref 5245 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:86,86,0,0 0/0:.:172:172:0:0%:86,86,0,0 -Example1_ref 5246 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:86,85,0,0 0/0:.:171:171:0:0%:86,85,0,0 -Example1_ref 5247 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:79,88,0,0 0/0:.:168:167:0:0%:79,88,0,0 -Example1_ref 5248 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:84,86,0,0 0/0:.:170:170:0:0%:84,86,0,0 -Example1_ref 5249 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:82,87,0,0 0/0:.:169:169:0:0%:82,87,0,0 -Example1_ref 5250 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:84,84,0,0 0/0:.:168:168:0:0%:84,84,0,0 -Example1_ref 5251 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 5252 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:84,86,0,0 0/0:.:170:170:0:0%:84,86,0,0 -Example1_ref 5253 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:83,86,0,0 0/0:.:169:169:0:0%:83,86,0,0 -Example1_ref 5254 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:82,86,0,0 0/0:.:168:168:0:0%:82,86,0,0 -Example1_ref 5255 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 5256 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:82,85,0,0 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 5257 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:85,86,0,0 0/0:.:171:171:0:0%:85,86,0,0 -Example1_ref 5258 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:86,86,0,0 0/0:.:172:172:0:0%:86,86,0,0 -Example1_ref 5259 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:85,87,0,0 0/0:.:172:172:0:0%:85,87,0,0 -Example1_ref 5260 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:85,85,0,0 0/0:.:170:170:0:0%:85,85,0,0 -Example1_ref 5261 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:0:0%:87,86,0,0 0/0:.:174:173:0:0%:87,86,0,0 -Example1_ref 5262 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:86,87,0,0 0/0:.:173:173:0:0%:86,87,0,0 -Example1_ref 5263 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:84,88,0,0 0/0:.:172:172:0:0%:84,88,0,0 -Example1_ref 5264 . A ATCTG . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:84,88,1,0 0/0:.:173:172:1:0.58%:84,88,1,0 -Example1_ref 5265 . T A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:85,85,0,1 0/0:.:171:170:1:0.58%:85,85,0,1 -Example1_ref 5266 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:86,83,0,0 0/0:.:169:169:0:0%:86,83,0,0 -Example1_ref 5267 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:167:167:0:0%:85,82,0,0 -Example1_ref 5268 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:166:166:0:0%:85,81,0,0 -Example1_ref 5269 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:164:164:0:0%:85,79,0,0 -Example1_ref 5270 . G T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:82,79,1,0 0/0:.:162:161:1:0.62%:82,79,1,0 -Example1_ref 5271 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:81,79,0,0 0/0:.:160:160:0:0%:81,79,0,0 -Example1_ref 5272 . C T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:82,75,1,0 0/0:.:158:157:1:0.63%:82,75,1,0 -Example1_ref 5273 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:83,79,0,0 0/0:.:162:162:0:0%:83,79,0,0 -Example1_ref 5274 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:82,81,0,0 0/0:.:163:163:0:0%:82,81,0,0 -Example1_ref 5275 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:166:166:0:0%:84,82,0,0 -Example1_ref 5276 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:167:167:0:0%:85,82,0,0 -Example1_ref 5277 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:83,82,0,0 0/0:.:165:165:0:0%:83,82,0,0 -Example1_ref 5278 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:88,79,0,0 0/0:.:167:167:0:0%:88,79,0,0 -Example1_ref 5279 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:87,78,0,0 0/0:.:165:165:0:0%:87,78,0,0 -Example1_ref 5280 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:88,81,0,0 0/0:.:169:169:0:0%:88,81,0,0 -Example1_ref 5281 . C CTCCT . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:86,81,1,0 0/0:.:168:167:1:0.6%:86,81,1,0 -Example1_ref 5282 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:88,82,0,0 0/0:.:170:170:0:0%:88,82,0,0 -Example1_ref 5283 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:83,83,0,0 0/0:.:166:166:0:0%:83,83,0,0 -Example1_ref 5284 . A AC . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:1:0.61%:86,78,0,1 0/0:.:166:164:1:0.61%:86,78,0,1 -Example1_ref 5285 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:0:0%:86,80,0,0 0/0:.:167:166:0:0%:86,80,0,0 -Example1_ref 5286 . GGATGT G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:161:1:0.62%:82,79,0,1 0/0:.:163:161:1:0.62%:82,79,0,1 -Example1_ref 5287 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:81,80,0,0 0/0:.:161:161:0:0%:81,80,0,0 -Example1_ref 5288 . A AC . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:81,82,1,0 0/0:.:164:163:1:0.61%:81,82,1,0 -Example1_ref 5289 . T C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:86,81,0,1 0/0:.:168:167:1:0.6%:86,81,0,1 -Example1_ref 5290 . G A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:83,80,0,1 0/0:.:164:163:1:0.61%:83,80,0,1 -Example1_ref 5291 . T G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:84,80,0,1 0/0:.:165:164:1:0.61%:84,80,0,1 -Example1_ref 5292 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:88,83,0,0 0/0:.:171:171:0:0%:88,83,0,0 -Example1_ref 5293 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:89,85,0,0 0/0:.:174:174:0:0%:89,85,0,0 -Example1_ref 5294 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:0:0%:92,84,0,0 0/0:.:177:176:0:0%:92,84,0,0 -Example1_ref 5295 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:92,81,0,0 0/0:.:173:173:0:0%:92,81,0,0 -Example1_ref 5296 . G GC . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=6.8862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:166:2:1.19%:86,80,2,0 0/0:.:168:166:2:1.19%:86,80,2,0 -Example1_ref 5297 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:87,71,0,0 0/0:.:158:158:0:0%:87,71,0,0 -Example1_ref 5298 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:158:158:0:0%:85,73,0,0 -Example1_ref 5299 . A ACCTGT . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:84,73,1,0 0/0:.:158:157:1:0.63%:84,73,1,0 -Example1_ref 5300 . C A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:86,72,1,0 0/0:.:159:158:1:0.63%:86,72,1,0 -Example1_ref 5301 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:85,68,0,0 0/0:.:153:153:0:0%:85,68,0,0 -Example1_ref 5302 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:156:156:0:0%:88,68,0,0 -Example1_ref 5303 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 5304 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:156:156:0:0%:90,66,0,0 -Example1_ref 5305 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:0:0%:91,69,0,0 0/0:.:161:160:0:0%:91,69,0,0 -Example1_ref 5306 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 5307 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:82,68,0,0 0/0:.:150:150:0:0%:82,68,0,0 -Example1_ref 5308 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:81,67,0,0 0/0:.:148:148:0:0%:81,67,0,0 -Example1_ref 5309 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:82,68,0,0 0/0:.:150:150:0:0%:82,68,0,0 -Example1_ref 5310 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:86,67,0,0 0/0:.:153:153:0:0%:86,67,0,0 -Example1_ref 5311 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:150:150:0:0%:87,63,0,0 -Example1_ref 5312 . C A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=6.888E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:144:2:1.37%:80,64,1,1 0/0:.:147:144:2:1.37%:80,64,1,1 -Example1_ref 5313 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:144:144:0:0%:83,61,0,0 -Example1_ref 5314 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:144:144:0:0%:82,62,0,0 -Example1_ref 5315 . A T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:77,65,1,0 0/0:.:143:142:1:0.7%:77,65,1,0 -Example1_ref 5316 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:83,65,0,0 0/0:.:148:148:0:0%:83,65,0,0 -Example1_ref 5317 . G A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:85,68,1,0 0/0:.:154:153:1:0.65%:85,68,1,0 -Example1_ref 5318 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:156:156:0:0%:88,68,0,0 -Example1_ref 5319 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:86,68,0,0 0/0:.:154:154:0:0%:86,68,0,0 -Example1_ref 5320 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:151:151:0:0%:84,67,0,0 -Example1_ref 5321 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:156:156:0:0%:88,68,0,0 -Example1_ref 5322 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:89,66,0,0 0/0:.:155:155:0:0%:89,66,0,0 -Example1_ref 5323 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:158:158:0:0%:91,67,0,0 -Example1_ref 5324 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 5325 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 5326 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:89,69,0,0 0/0:.:158:158:0:0%:89,69,0,0 -Example1_ref 5327 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 5328 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:99,60,0,0 0/0:.:159:159:0:0%:99,60,0,0 -Example1_ref 5329 . C A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=6.8864E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:2:1.2%:98,66,0,2 0/0:.:166:164:2:1.2%:98,66,0,2 -Example1_ref 5330 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:171:171:0:0%:103,68,0,0 -Example1_ref 5331 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:102,68,0,0 0/0:.:170:170:0:0%:102,68,0,0 -Example1_ref 5332 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:103,69,0,0 0/0:.:172:172:0:0%:103,69,0,0 -Example1_ref 5333 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:107,68,0,0 0/0:.:175:175:0:0%:107,68,0,0 -Example1_ref 5334 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:108,71,0,0 0/0:.:179:179:0:0%:108,71,0,0 -Example1_ref 5335 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:108,71,0,0 0/0:.:179:179:0:0%:108,71,0,0 -Example1_ref 5336 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:111,71,0,0 0/0:.:182:182:0:0%:111,71,0,0 -Example1_ref 5337 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:110,71,0,0 0/0:.:181:181:0:0%:110,71,0,0 -Example1_ref 5338 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:108,71,0,0 0/0:.:179:179:0:0%:108,71,0,0 -Example1_ref 5339 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:109,71,0,0 0/0:.:180:180:0:0%:109,71,0,0 -Example1_ref 5340 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:110,74,0,0 0/0:.:184:184:0:0%:110,74,0,0 -Example1_ref 5341 . C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:110,74,0,0 0/0:.:184:184:0:0%:110,74,0,0 -Example1_ref 5342 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:110,72,0,0 0/0:.:182:182:0:0%:110,72,0,0 -Example1_ref 5343 . A T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:109,73,0,1 0/0:.:183:182:1:0.55%:109,73,0,1 -Example1_ref 5344 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:106,72,0,0 0/0:.:178:178:0:0%:106,72,0,0 -Example1_ref 5345 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:106,71,0,0 0/0:.:177:177:0:0%:106,71,0,0 -Example1_ref 5346 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:112,71,0,0 0/0:.:183:183:0:0%:112,71,0,0 -Example1_ref 5347 . T A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:110,69,1,0 0/0:.:180:179:1:0.56%:110,69,1,0 -Example1_ref 5348 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:112,76,0,0 0/0:.:188:188:0:0%:112,76,0,0 -Example1_ref 5349 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:189:189:0:0%:111,78,0,0 -Example1_ref 5350 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:109,75,0,0 0/0:.:184:184:0:0%:109,75,0,0 -Example1_ref 5351 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:103,77,0,0 0/0:.:180:180:0:0%:103,77,0,0 -Example1_ref 5352 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:103,74,0,0 0/0:.:177:177:0:0%:103,74,0,0 -Example1_ref 5353 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:109,76,0,0 0/0:.:185:185:0:0%:109,76,0,0 -Example1_ref 5354 . G T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:107,76,1,0 0/0:.:184:183:1:0.54%:107,76,1,0 -Example1_ref 5355 . G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:106,77,0,0 0/0:.:183:183:0:0%:106,77,0,0 -Example1_ref 5356 . G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:107,74,0,0 0/0:.:181:181:0:0%:107,74,0,0 -Example1_ref 5357 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:110,76,0,0 0/0:.:186:186:0:0%:110,76,0,0 -Example1_ref 5358 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:118,83,0,0 0/0:.:201:201:0:0%:118,83,0,0 -Example1_ref 5359 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:122,86,0,0 0/0:.:208:208:0:0%:122,86,0,0 -Example1_ref 5360 . T G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:124,85,0,1 0/0:.:210:209:1:0.48%:124,85,0,1 -Example1_ref 5361 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:126,87,0,0 0/0:.:213:213:0:0%:126,87,0,0 -Example1_ref 5362 . G A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:122,89,1,0 0/0:.:212:211:1:0.47%:122,89,1,0 -Example1_ref 5363 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:130,89,0,0 0/0:.:219:219:0:0%:130,89,0,0 -Example1_ref 5364 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:128,92,0,0 0/0:.:220:220:0:0%:128,92,0,0 -Example1_ref 5365 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:131,91,0,0 0/0:.:222:222:0:0%:131,91,0,0 -Example1_ref 5366 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:136,89,0,0 0/0:.:225:225:0:0%:136,89,0,0 -Example1_ref 5367 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:136,89,0,0 0/0:.:225:225:0:0%:136,89,0,0 -Example1_ref 5368 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:136,87,0,0 0/0:.:223:223:0:0%:136,87,0,0 -Example1_ref 5369 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:136,86,0,0 0/0:.:222:222:0:0%:136,86,0,0 -Example1_ref 5370 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:136,88,0,0 0/0:.:224:224:0:0%:136,88,0,0 -Example1_ref 5371 . G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:151,92,0,0 0/0:.:243:243:0:0%:151,92,0,0 -Example1_ref 5372 . C . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:170,90,0,0 0/0:.:260:260:0:0%:170,90,0,0 -Example1_ref 5373 . T A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:166,90,0,1 0/0:.:257:256:1:0.39%:166,90,0,1 -Example1_ref 5374 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:169,89,0,0 0/0:.:258:258:0:0%:169,89,0,0 -Example1_ref 5375 . T . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:173,91,0,0 0/0:.:264:264:0:0%:173,91,0,0 -Example1_ref 5376 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:172,97,0,0 0/0:.:269:269:0:0%:172,97,0,0 -Example1_ref 5377 . G . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:174,92,0,0 0/0:.:266:266:0:0%:174,92,0,0 -Example1_ref 5378 . G . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:177,94,0,0 0/0:.:271:271:0:0%:177,94,0,0 -Example1_ref 5379 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:173,93,0,0 0/0:.:266:266:0:0%:173,93,0,0 -Example1_ref 5380 . G . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:183,91,0,0 0/0:.:274:274:0:0%:183,91,0,0 -Example1_ref 5381 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:189,89,0,0 0/0:.:278:278:0:0%:189,89,0,0 -Example1_ref 5382 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:189,91,0,0 0/0:.:280:280:0:0%:189,91,0,0 -Example1_ref 5383 . G . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:188,88,0,0 0/0:.:276:276:0:0%:188,88,0,0 -Example1_ref 5384 . C . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:186,90,0,0 0/0:.:276:276:0:0%:186,90,0,0 -Example1_ref 5385 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:191,91,0,0 0/0:.:282:282:0:0%:191,91,0,0 -Example1_ref 5386 . A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:192,89,0,0 0/0:.:281:281:0:0%:192,89,0,0 -Example1_ref 5387 . C . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:203,87,0,0 0/0:.:290:290:0:0%:203,87,0,0 -Example1_ref 5388 . C A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:200,85,0,1 0/0:.:286:285:1:0.35%:200,85,0,1 -Example1_ref 5389 . T . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:198,83,0,0 0/0:.:281:281:0:0%:198,83,0,0 -Example1_ref 5390 . C . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:200,86,0,0 0/0:.:286:286:0:0%:200,86,0,0 -Example1_ref 5391 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:200,89,0,0 0/0:.:289:289:0:0%:200,89,0,0 -Example1_ref 5392 . G . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:202,87,0,0 0/0:.:289:289:0:0%:202,87,0,0 -Example1_ref 5393 . C . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:202,86,0,0 0/0:.:288:288:0:0%:202,86,0,0 -Example1_ref 5394 . A G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:204,90,1,0 0/0:.:295:294:1:0.34%:204,90,1,0 -Example1_ref 5395 . C A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:208,88,1,0 0/0:.:297:296:1:0.34%:208,88,1,0 -Example1_ref 5396 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:207,90,0,0 0/0:.:297:297:0:0%:207,90,0,0 -Example1_ref 5397 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:213,89,0,0 0/0:.:302:302:0:0%:213,89,0,0 -Example1_ref 5398 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:212,87,0,0 0/0:.:299:299:0:0%:212,87,0,0 -Example1_ref 5399 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:218,90,0,0 0/0:.:308:308:0:0%:218,90,0,0 -Example1_ref 5400 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:214,93,0,0 0/0:.:307:307:0:0%:214,93,0,0 -Example1_ref 5401 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:0:0%:215,95,0,0 0/0:.:311:310:0:0%:215,95,0,0 -Example1_ref 5402 . C T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:217,96,1,0 0/0:.:314:313:1:0.32%:217,96,1,0 -Example1_ref 5403 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:220,98,0,0 0/0:.:318:318:0:0%:220,98,0,0 -Example1_ref 5404 . G . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:217,99,0,0 0/0:.:316:316:0:0%:217,99,0,0 -Example1_ref 5405 . C . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:214,100,0,0 0/0:.:314:314:0:0%:214,100,0,0 -Example1_ref 5406 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:220,103,0,0 0/0:.:323:323:0:0%:220,103,0,0 -Example1_ref 5407 . G GC . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:322:1:0.31%:217,105,1,0 0/0:.:323:322:1:0.31%:217,105,1,0 -Example1_ref 5408 . C . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:215,105,0,0 0/0:.:320:320:0:0%:215,105,0,0 -Example1_ref 5409 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:221,106,0,0 0/0:.:327:327:0:0%:221,106,0,0 -Example1_ref 5410 . G GCTGTCACTTA . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:320:1:0.31%:216,104,1,0 0/0:.:322:320:1:0.31%:216,104,1,0 -Example1_ref 5411 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:221,101,0,0 0/0:.:322:322:0:0%:221,101,0,0 -Example1_ref 5412 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:220,105,0,0 0/0:.:325:325:0:0%:220,105,0,0 -Example1_ref 5413 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:214,107,0,0 0/0:.:321:321:0:0%:214,107,0,0 -Example1_ref 5414 . C . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:220,106,0,0 0/0:.:326:326:0:0%:220,106,0,0 -Example1_ref 5415 . T A . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:317:1:0.31%:210,107,0,1 0/0:.:319:317:1:0.31%:210,107,0,1 -Example1_ref 5416 . C . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:218,109,0,0 0/0:.:327:327:0:0%:218,109,0,0 -Example1_ref 5417 . T . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:219,107,0,0 0/0:.:326:326:0:0%:219,107,0,0 -Example1_ref 5418 . G . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:227,108,0,0 0/0:.:335:335:0:0%:227,108,0,0 -Example1_ref 5419 . G T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=6.8806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:333:2:0.6%:224,109,2,0 0/0:.:335:333:2:0.6%:224,109,2,0 -Example1_ref 5420 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:232,111,0,0 0/0:.:343:343:0:0%:232,111,0,0 -Example1_ref 5421 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:228,112,0,0 0/0:.:340:340:0:0%:228,112,0,0 -Example1_ref 5422 . G . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:224,116,0,0 0/0:.:340:340:0:0%:224,116,0,0 -Example1_ref 5423 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:233,115,0,0 0/0:.:348:348:0:0%:233,115,0,0 -Example1_ref 5424 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:229,113,0,0 0/0:.:342:342:0:0%:229,113,0,0 -Example1_ref 5425 . G . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:231,115,0,0 0/0:.:346:346:0:0%:231,115,0,0 -Example1_ref 5426 . C A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:335:1:0.3%:226,109,0,1 0/0:.:337:335:1:0.3%:226,109,0,1 -Example1_ref 5427 . C A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:222,116,1,0 0/0:.:339:338:1:0.29%:222,116,1,0 -Example1_ref 5428 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:231,122,0,0 0/0:.:353:353:0:0%:231,122,0,0 -Example1_ref 5429 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:227,122,0,0 0/0:.:349:349:0:0%:227,122,0,0 -Example1_ref 5430 . G . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:223,118,0,0 0/0:.:341:341:0:0%:223,118,0,0 -Example1_ref 5431 . C . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:230,119,0,0 0/0:.:349:349:0:0%:230,119,0,0 -Example1_ref 5432 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:228,121,0,0 0/0:.:349:349:0:0%:228,121,0,0 -Example1_ref 5433 . G . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:234,118,0,0 0/0:.:352:352:0:0%:234,118,0,0 -Example1_ref 5434 . G . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:230,123,0,0 0/0:.:353:353:0:0%:230,123,0,0 -Example1_ref 5435 . C . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:231,122,0,0 0/0:.:353:353:0:0%:231,122,0,0 -Example1_ref 5436 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:236,126,0,0 0/0:.:362:362:0:0%:236,126,0,0 -Example1_ref 5437 . A G . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:364:1:0.27%:239,125,1,0 0/0:.:365:364:1:0.27%:239,125,1,0 -Example1_ref 5438 . G . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:242,125,0,0 0/0:.:367:367:0:0%:242,125,0,0 -Example1_ref 5439 . A T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:369:1:0.27%:244,125,0,1 0/0:.:370:369:1:0.27%:244,125,0,1 -Example1_ref 5440 . T A . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=6.8801E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:365:2:0.54%:240,125,0,2 0/0:.:367:365:2:0.54%:240,125,0,2 -Example1_ref 5441 . C . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:244,129,0,0 0/0:.:373:373:0:0%:244,129,0,0 -Example1_ref 5442 . A . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:247,130,0,0 0/0:.:377:377:0:0%:247,130,0,0 -Example1_ref 5443 . G . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:246,130,0,0 0/0:.:376:376:0:0%:246,130,0,0 -Example1_ref 5444 . A . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:248,133,0,0 0/0:.:381:381:0:0%:248,133,0,0 -Example1_ref 5445 . C . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:245,130,0,0 0/0:.:375:375:0:0%:245,130,0,0 -Example1_ref 5446 . A . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:247,134,0,0 0/0:.:381:381:0:0%:247,134,0,0 -Example1_ref 5447 . T C . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:1:0.27%:243,131,1,0 0/0:.:375:374:1:0.27%:243,131,1,0 -Example1_ref 5448 . T . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:246,131,0,0 0/0:.:377:377:0:0%:246,131,0,0 -Example1_ref 5449 . G T . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:375:1:0.27%:241,134,1,0 0/0:.:376:375:1:0.27%:241,134,1,0 -Example1_ref 5450 . A G . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:384:1:0.26%:243,141,1,0 0/0:.:385:384:1:0.26%:243,141,1,0 -Example1_ref 5451 . A . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:245,143,0,0 0/0:.:388:388:0:0%:245,143,0,0 -Example1_ref 5452 . A G . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:242,143,0,1 0/0:.:386:385:1:0.26%:242,143,0,1 -Example1_ref 5453 . A G . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:1:0.26%:246,140,0,1 0/0:.:387:386:1:0.26%:246,140,0,1 -Example1_ref 5454 . A . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:247,143,0,0 0/0:.:390:390:0:0%:247,143,0,0 -Example1_ref 5455 . C A . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:256,144,0,1 0/0:.:401:400:1:0.25%:256,144,0,1 -Example1_ref 5456 . T A . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:395:1:0.25%:255,140,1,0 0/0:.:396:395:1:0.25%:255,140,1,0 -Example1_ref 5457 . C . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:254,142,0,0 0/0:.:396:396:0:0%:254,142,0,0 -Example1_ref 5458 . AAGG A . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:1:0.25%:252,146,1,0 0/0:.:399:398:1:0.25%:252,146,1,0 -Example1_ref 5459 . A . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:247,149,0,0 0/0:.:396:396:0:0%:247,149,0,0 -Example1_ref 5460 . G . PASS DP=808;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:251,153,0,0 0/0:.:404:404:0:0%:251,153,0,0 -Example1_ref 5461 . G . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:247,155,0,0 0/0:.:402:402:0:0%:247,155,0,0 -Example1_ref 5462 . AAG A . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:249,151,1,0 0/0:.:401:400:1:0.25%:249,151,1,0 -Example1_ref 5463 . A . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:245,151,0,0 0/0:.:396:396:0:0%:245,151,0,0 -Example1_ref 5464 . G . PASS DP=806;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:403:0:0%:250,153,0,0 0/0:.:403:403:0:0%:250,153,0,0 -Example1_ref 5465 . C . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:250,149,0,0 0/0:.:399:399:0:0%:250,149,0,0 -Example1_ref 5466 . G . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:252,153,0,0 0/0:.:405:405:0:0%:252,153,0,0 -Example1_ref 5467 . A . PASS DP=812;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:406:0:0%:256,150,0,0 0/0:.:406:406:0:0%:256,150,0,0 -Example1_ref 5468 . T . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:249,150,0,0 0/0:.:399:399:0:0%:249,150,0,0 -Example1_ref 5469 . C A . PASS DP=812;SS=0;SSC=0;GPV=1E0;SPV=6.5683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:403:3:0.74%:255,148,1,2 0/0:.:406:403:3:0.74%:255,148,1,2 -Example1_ref 5470 . A . PASS DP=824;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:258,154,0,0 0/0:.:412:412:0:0%:258,154,0,0 -Example1_ref 5471 . A G . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:413:1:0.24%:255,158,1,0 0/0:.:414:413:1:0.24%:255,158,1,0 -Example1_ref 5472 . G . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:258,158,0,0 0/0:.:416:416:0:0%:258,158,0,0 -Example1_ref 5473 . G T . PASS DP=818;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:408:1:0.24%:252,156,1,0 0/0:.:409:408:1:0.24%:252,156,1,0 -Example1_ref 5474 . A . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:257,160,0,0 0/0:.:417:417:0:0%:257,160,0,0 -Example1_ref 5475 . C . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:255,153,0,0 0/0:.:408:408:0:0%:255,153,0,0 -Example1_ref 5476 . A . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:257,154,0,0 0/0:.:411:411:0:0%:257,154,0,0 -Example1_ref 5477 . C . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:259,152,0,0 0/0:.:411:411:0:0%:259,152,0,0 -Example1_ref 5478 . A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:0:0%:265,157,0,0 0/0:.:423:422:0:0%:265,157,0,0 -Example1_ref 5479 . A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:266,155,0,0 0/0:.:421:421:0:0%:266,155,0,0 -Example1_ref 5480 . A G . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:426:1:0.23%:266,160,1,0 0/0:.:427:426:1:0.23%:266,160,1,0 -Example1_ref 5481 . CA C . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:1:0.24%:265,157,1,0 0/0:.:423:422:1:0.24%:265,157,1,0 -Example1_ref 5482 . A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:267,156,0,0 0/0:.:423:423:0:0%:267,156,0,0 -Example1_ref 5483 . A . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:266,162,0,0 0/0:.:428:428:0:0%:266,162,0,0 -Example1_ref 5484 . A . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:268,162,0,0 0/0:.:430:430:0:0%:268,162,0,0 -Example1_ref 5485 . G . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:262,172,0,0 0/0:.:434:434:0:0%:262,172,0,0 -Example1_ref 5486 . C . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:264,172,0,0 0/0:.:436:436:0:0%:264,172,0,0 -Example1_ref 5487 . A . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:269,176,0,0 0/0:.:445:445:0:0%:269,176,0,0 -Example1_ref 5488 . G . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:270,176,0,0 0/0:.:446:446:0:0%:270,176,0,0 -Example1_ref 5489 . T TTA . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:1:0.22%:271,174,1,0 0/0:.:446:445:1:0.22%:271,174,1,0 -Example1_ref 5490 . G T . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:430:1:0.23%:256,174,1,0 0/0:.:431:430:1:0.23%:256,174,1,0 -Example1_ref 5491 . C . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:263,172,0,0 0/0:.:435:435:0:0%:263,172,0,0 -Example1_ref 5492 . A . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:269,175,0,0 0/0:.:444:444:0:0%:269,175,0,0 -Example1_ref 5493 . G . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:263,173,0,0 0/0:.:436:436:0:0%:263,173,0,0 -Example1_ref 5494 . T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:268,170,0,0 0/0:.:438:438:0:0%:268,170,0,0 -Example1_ref 5495 . C A . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:428:1:0.23%:260,168,0,1 0/0:.:430:428:1:0.23%:260,168,0,1 -Example1_ref 5496 . A . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:266,178,0,0 0/0:.:444:444:0:0%:266,178,0,0 -Example1_ref 5497 . G . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:275,178,0,0 0/0:.:453:453:0:0%:275,178,0,0 -Example1_ref 5498 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:275,175,0,0 0/0:.:450:450:0:0%:275,175,0,0 -Example1_ref 5499 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:274,176,0,0 0/0:.:450:450:0:0%:274,176,0,0 -Example1_ref 5500 . C A . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=6.8793E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:435:2:0.46%:267,168,0,2 0/0:.:438:435:2:0.46%:267,168,0,2 -Example1_ref 5501 . A . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:273,181,0,0 0/0:.:454:454:0:0%:273,181,0,0 -Example1_ref 5502 . G . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:0:0%:272,178,0,0 0/0:.:451:450:0:0%:272,178,0,0 -Example1_ref 5503 . A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:272,177,0,0 0/0:.:449:449:0:0%:272,177,0,0 -Example1_ref 5504 . G . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:264,180,0,0 0/0:.:444:444:0:0%:264,180,0,0 -Example1_ref 5505 . C A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:265,176,0,1 0/0:.:442:441:1:0.23%:265,176,0,1 -Example1_ref 5506 . T A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:419:1:0.24%:254,165,1,0 0/0:.:421:419:1:0.24%:254,165,1,0 -Example1_ref 5507 . C . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:427:0:0%:263,164,0,0 0/0:.:428:427:0:0%:263,164,0,0 -Example1_ref 5508 . C T . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:269,175,1,0 0/0:.:445:444:1:0.22%:269,175,1,0 -Example1_ref 5509 . G . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:272,182,0,0 0/0:.:454:454:0:0%:272,182,0,0 -Example1_ref 5510 . T . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:274,180,0,0 0/0:.:454:454:0:0%:274,180,0,0 -Example1_ref 5511 . A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:267,182,0,0 0/0:.:449:449:0:0%:267,182,0,0 -Example1_ref 5512 . G . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:268,180,0,0 0/0:.:448:448:0:0%:268,180,0,0 -Example1_ref 5513 . G . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:261,180,0,0 0/0:.:441:441:0:0%:261,180,0,0 -Example1_ref 5514 . A T . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:265,183,1,0 0/0:.:449:448:1:0.22%:265,183,1,0 -Example1_ref 5515 . A T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:264,185,1,0 0/0:.:450:449:1:0.22%:264,185,1,0 -Example1_ref 5516 . A . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:272,186,0,0 0/0:.:458:458:0:0%:272,186,0,0 -Example1_ref 5517 . C . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:269,181,0,0 0/0:.:450:450:0:0%:269,181,0,0 -Example1_ref 5518 . T . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:260,181,0,0 0/0:.:441:441:0:0%:260,181,0,0 -Example1_ref 5519 . T . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:263,179,0,0 0/0:.:442:442:0:0%:263,179,0,0 -Example1_ref 5520 . G A . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:259,184,0,1 0/0:.:444:443:1:0.23%:259,184,0,1 -Example1_ref 5521 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:0:0%:259,183,0,0 0/0:.:443:442:0:0%:259,183,0,0 -Example1_ref 5522 . T . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:260,182,0,0 0/0:.:442:442:0:0%:260,182,0,0 -Example1_ref 5523 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:257,185,0,0 0/0:.:442:442:0:0%:257,185,0,0 -Example1_ref 5524 . G . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:462:0:0%:254,208,0,0 0/0:.:463:462:0:0%:254,208,0,0 -Example1_ref 5525 . T . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:262,210,0,0 0/0:.:472:472:0:0%:262,210,0,0 -Example1_ref 5526 . A . PASS DP=934;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:260,207,0,0 0/0:.:467:467:0:0%:260,207,0,0 -Example1_ref 5527 . G GA . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:1:0.22%:252,205,0,1 0/0:.:459:457:1:0.22%:252,205,0,1 -Example1_ref 5528 . C A . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:1:0.22%:258,201,0,1 0/0:.:460:459:1:0.22%:258,201,0,1 -Example1_ref 5529 . A AG . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:267,208,0,1 0/0:.:476:475:1:0.21%:267,208,0,1 -Example1_ref 5530 . A T . PASS DP=942;SS=0;SSC=0;GPV=1E0;SPV=6.879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:469:2:0.42%:262,207,1,1 0/0:.:471:469:2:0.42%:262,207,1,1 -Example1_ref 5531 . T . PASS DP=940;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:470:0:0%:270,200,0,0 0/0:.:470:470:0:0%:270,200,0,0 -Example1_ref 5532 . T . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:264,232,0,0 0/0:.:496:496:0:0%:264,232,0,0 -Example1_ref 5533 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:264,238,0,0 0/0:.:502:502:0:0%:264,238,0,0 -Example1_ref 5534 . A . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:266,237,0,0 0/0:.:503:503:0:0%:266,237,0,0 -Example1_ref 5535 . A . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:264,237,0,0 0/0:.:501:501:0:0%:264,237,0,0 -Example1_ref 5536 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:262,228,0,0 0/0:.:490:490:0:0%:262,228,0,0 -Example1_ref 5537 . C . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:257,238,0,0 0/0:.:495:495:0:0%:257,238,0,0 -Example1_ref 5538 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:262,232,0,0 0/0:.:494:494:0:0%:262,232,0,0 -Example1_ref 5539 . G . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:278,233,0,0 0/0:.:511:511:0:0%:278,233,0,0 -Example1_ref 5540 . T A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:1:0.2%:276,225,1,0 0/0:.:502:501:1:0.2%:276,225,1,0 -Example1_ref 5541 . C . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:275,226,0,0 0/0:.:501:501:0:0%:275,226,0,0 -Example1_ref 5542 . C . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:272,242,0,0 0/0:.:514:514:0:0%:272,242,0,0 -Example1_ref 5543 . A . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:523:0:0%:280,243,0,0 0/0:.:523:523:0:0%:280,243,0,0 -Example1_ref 5544 . G C . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:520:1:0.19%:279,241,1,0 0/0:.:523:520:1:0.19%:279,241,1,0 -Example1_ref 5545 . G . PASS DP=1036;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:517:0:0%:275,242,0,0 0/0:.:518:517:0:0%:275,242,0,0 -Example1_ref 5546 . AT A . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=6.8786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:517:2:0.39%:268,249,2,0 0/0:.:519:517:2:0.39%:268,249,2,0 -Example1_ref 5547 . T G . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:263,237,0,1 0/0:.:501:500:1:0.2%:263,237,0,1 -Example1_ref 5548 . T . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:264,233,0,0 0/0:.:497:497:0:0%:264,233,0,0 -Example1_ref 5549 . A T . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:1:0.2%:262,239,1,0 0/0:.:502:501:1:0.2%:262,239,1,0 -Example1_ref 5550 . T G . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:1:0.2%:262,234,1,0 0/0:.:497:496:1:0.2%:262,234,1,0 -Example1_ref 5551 . G GTCTGTC . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:260,237,1,0 0/0:.:498:497:1:0.2%:260,237,1,0 -Example1_ref 5552 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:262,222,0,0 0/0:.:484:484:0:0%:262,222,0,0 -Example1_ref 5553 . C . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:255,231,0,0 0/0:.:486:486:0:0%:255,231,0,0 -Example1_ref 5554 . A . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:254,236,0,0 0/0:.:490:490:0:0%:254,236,0,0 -Example1_ref 5555 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:257,237,0,0 0/0:.:494:494:0:0%:257,237,0,0 -Example1_ref 5556 . C . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:254,238,0,0 0/0:.:492:492:0:0%:254,238,0,0 -Example1_ref 5557 . A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:489:0:0%:250,239,0,0 0/0:.:493:489:0:0%:250,239,0,0 -Example1_ref 5558 . A G . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:488:1:0.2%:246,242,0,1 0/0:.:491:488:1:0.2%:246,242,0,1 -Example1_ref 5559 . A C . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:245,244,1,0 0/0:.:490:489:1:0.2%:245,244,1,0 -Example1_ref 5560 . G . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:231,244,0,0 0/0:.:475:475:0:0%:231,244,0,0 -Example1_ref 5561 . A . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:236,244,0,0 0/0:.:480:480:0:0%:236,244,0,0 -Example1_ref 5562 . A . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:222,241,0,0 0/0:.:463:463:0:0%:222,241,0,0 -Example1_ref 5563 . A . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:223,241,0,0 0/0:.:464:464:0:0%:223,241,0,0 -Example1_ref 5564 . T . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:221,240,0,0 0/0:.:461:461:0:0%:221,240,0,0 -Example1_ref 5565 . C . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:221,243,0,0 0/0:.:464:464:0:0%:221,243,0,0 -Example1_ref 5566 . G . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:216,243,0,0 0/0:.:459:459:0:0%:216,243,0,0 -Example1_ref 5567 . T . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:219,235,0,0 0/0:.:454:454:0:0%:219,235,0,0 -Example1_ref 5568 . G C . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:1:0.23%:203,234,1,0 0/0:.:438:437:1:0.23%:203,234,1,0 -Example1_ref 5569 . C A . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:447:1:0.22%:211,236,0,1 0/0:.:448:447:1:0.22%:211,236,0,1 -Example1_ref 5570 . C A . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:1:0.22%:200,245,0,1 0/0:.:446:445:1:0.22%:200,245,0,1 -Example1_ref 5571 . A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:209,246,0,0 0/0:.:455:455:0:0%:209,246,0,0 -Example1_ref 5572 . T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:205,243,0,0 0/0:.:448:448:0:0%:205,243,0,0 -Example1_ref 5573 . C . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:207,241,0,0 0/0:.:448:448:0:0%:207,241,0,0 -Example1_ref 5574 . G T . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:455:1:0.22%:206,249,1,0 0/0:.:456:455:1:0.22%:206,249,1,0 -Example1_ref 5575 . A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:203,252,0,0 0/0:.:455:455:0:0%:203,252,0,0 -Example1_ref 5576 . T . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:197,250,0,0 0/0:.:447:447:0:0%:197,250,0,0 -Example1_ref 5577 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:195,255,0,0 0/0:.:450:450:0:0%:195,255,0,0 -Example1_ref 5578 . G . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:192,257,0,0 0/0:.:449:449:0:0%:192,257,0,0 -Example1_ref 5579 . C A . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:433:1:0.23%:191,242,0,1 0/0:.:434:433:1:0.23%:191,242,0,1 -Example1_ref 5580 . G . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:197,256,0,0 0/0:.:453:453:0:0%:197,256,0,0 -Example1_ref 5581 . A . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:194,257,0,0 0/0:.:451:451:0:0%:194,257,0,0 -Example1_ref 5582 . G . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:191,257,0,0 0/0:.:448:448:0:0%:191,257,0,0 -Example1_ref 5583 . A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:192,257,0,0 0/0:.:449:449:0:0%:192,257,0,0 -Example1_ref 5584 . C A . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:194,252,0,1 0/0:.:447:446:1:0.22%:194,252,0,1 -Example1_ref 5585 . T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:192,256,0,0 0/0:.:448:448:0:0%:192,256,0,0 -Example1_ref 5586 . A . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:196,262,0,0 0/0:.:458:458:0:0%:196,262,0,0 -Example1_ref 5587 . G . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:191,258,0,0 0/0:.:449:449:0:0%:191,258,0,0 -Example1_ref 5588 . G . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:197,262,0,0 0/0:.:459:459:0:0%:197,262,0,0 -Example1_ref 5589 . T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:192,261,0,0 0/0:.:453:453:0:0%:192,261,0,0 -Example1_ref 5590 . T . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:192,259,0,0 0/0:.:451:451:0:0%:192,259,0,0 -Example1_ref 5591 . G T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:190,259,1,0 0/0:.:450:449:1:0.22%:190,259,1,0 -Example1_ref 5592 . T . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:191,258,0,0 0/0:.:449:449:0:0%:191,258,0,0 -Example1_ref 5593 . G . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:191,262,0,0 0/0:.:453:453:0:0%:191,262,0,0 -Example1_ref 5594 . A . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:189,259,0,0 0/0:.:448:448:0:0%:189,259,0,0 -Example1_ref 5595 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:183,260,0,0 0/0:.:443:443:0:0%:183,260,0,0 -Example1_ref 5596 . G . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:185,253,0,0 0/0:.:438:438:0:0%:185,253,0,0 -Example1_ref 5597 . C . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:190,250,0,0 0/0:.:440:440:0:0%:190,250,0,0 -Example1_ref 5598 . A . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:188,253,0,0 0/0:.:441:441:0:0%:188,253,0,0 -Example1_ref 5599 . G . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:185,246,0,0 0/0:.:431:431:0:0%:185,246,0,0 -Example1_ref 5600 . C . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:184,246,0,0 0/0:.:430:430:0:0%:184,246,0,0 -Example1_ref 5601 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:183,257,0,0 0/0:.:440:440:0:0%:183,257,0,0 -Example1_ref 5602 . G . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:184,254,0,0 0/0:.:438:438:0:0%:184,254,0,0 -Example1_ref 5603 . G . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:181,256,0,0 0/0:.:437:437:0:0%:181,256,0,0 -Example1_ref 5604 . A . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:185,260,0,0 0/0:.:445:445:0:0%:185,260,0,0 -Example1_ref 5605 . C . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:183,248,0,0 0/0:.:431:431:0:0%:183,248,0,0 -Example1_ref 5606 . T . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:179,254,0,0 0/0:.:433:433:0:0%:179,254,0,0 -Example1_ref 5607 . T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:183,255,0,0 0/0:.:438:438:0:0%:183,255,0,0 -Example1_ref 5608 . C . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:174,253,0,0 0/0:.:427:427:0:0%:174,253,0,0 -Example1_ref 5609 . A . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:173,259,0,0 0/0:.:432:432:0:0%:173,259,0,0 -Example1_ref 5610 . G . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:176,256,0,0 0/0:.:432:432:0:0%:176,256,0,0 -Example1_ref 5611 . C . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:170,250,0,0 0/0:.:420:420:0:0%:170,250,0,0 -Example1_ref 5612 . T . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:171,253,0,0 0/0:.:424:424:0:0%:171,253,0,0 -Example1_ref 5613 . A C . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:423:1:0.24%:169,254,0,1 0/0:.:424:423:1:0.24%:169,254,0,1 -Example1_ref 5614 . G A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:420:1:0.24%:171,249,0,1 0/0:.:421:420:1:0.24%:171,249,0,1 -Example1_ref 5615 . G . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:419:0:0%:168,251,0,0 0/0:.:419:419:0:0%:168,251,0,0 -Example1_ref 5616 . A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:168,255,0,0 0/0:.:423:423:0:0%:168,255,0,0 -Example1_ref 5617 . A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:169,254,0,0 0/0:.:423:423:0:0%:169,254,0,0 -Example1_ref 5618 . T TCTG . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:165,253,1,0 0/0:.:419:418:1:0.24%:165,253,1,0 -Example1_ref 5619 . T . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:164,253,0,0 0/0:.:417:417:0:0%:164,253,0,0 -Example1_ref 5620 . G . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:168,252,0,0 0/0:.:420:420:0:0%:168,252,0,0 -Example1_ref 5621 . C . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:167,251,0,0 0/0:.:418:418:0:0%:167,251,0,0 -Example1_ref 5622 . A G . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:1:0.24%:168,254,1,0 0/0:.:423:422:1:0.24%:168,254,1,0 -Example1_ref 5623 . T . PASS DP=826;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:413:0:0%:158,255,0,0 0/0:.:413:413:0:0%:158,255,0,0 -Example1_ref 5624 . T . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:164,250,0,0 0/0:.:414:414:0:0%:164,250,0,0 -Example1_ref 5625 . A . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:165,250,0,0 0/0:.:415:415:0:0%:165,250,0,0 -Example1_ref 5626 . A G . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:419:1:0.24%:167,252,1,0 0/0:.:421:419:1:0.24%:167,252,1,0 -Example1_ref 5627 . C . PASS DP=812;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:406:0:0%:157,249,0,0 0/0:.:406:406:0:0%:157,249,0,0 -Example1_ref 5628 . A . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:158,253,0,0 0/0:.:411:411:0:0%:158,253,0,0 -Example1_ref 5629 . C CCTGTCTCTT . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:404:1:0.25%:155,249,1,0 0/0:.:405:404:1:0.25%:155,249,1,0 -Example1_ref 5630 . A . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:154,246,0,0 0/0:.:400:400:0:0%:154,246,0,0 -Example1_ref 5631 . G . PASS DP=788;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:394:394:0:0%:152,242,0,0 0/0:.:394:394:0:0%:152,242,0,0 -Example1_ref 5632 . C . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:155,247,0,0 0/0:.:402:402:0:0%:155,247,0,0 -Example1_ref 5633 . A ATCTGTCTC . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:401:1:0.25%:152,249,1,0 0/0:.:402:401:1:0.25%:152,249,1,0 -Example1_ref 5634 . T . PASS DP=786;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:152,241,0,0 0/0:.:393:393:0:0%:152,241,0,0 -Example1_ref 5635 . T C . PASS DP=790;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:395:394:1:0.25%:152,242,1,0 0/0:.:395:394:1:0.25%:152,242,1,0 -Example1_ref 5636 . A . PASS DP=796;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:398:0:0%:154,244,0,0 0/0:.:398:398:0:0%:154,244,0,0 -Example1_ref 5637 . C . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:151,236,0,0 0/0:.:387:387:0:0%:151,236,0,0 -Example1_ref 5638 . T . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:149,237,0,0 0/0:.:387:386:0:0%:149,237,0,0 -Example1_ref 5639 . C A . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:387:1:0.26%:146,241,0,1 0/0:.:389:387:1:0.26%:146,241,0,1 -Example1_ref 5640 . A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:149,238,0,0 0/0:.:387:387:0:0%:149,238,0,0 -Example1_ref 5641 . G A . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:151,234,0,1 0/0:.:386:385:1:0.26%:151,234,0,1 -Example1_ref 5642 . A . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:149,236,0,0 0/0:.:385:385:0:0%:149,236,0,0 -Example1_ref 5643 . A G . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:385:1:0.26%:152,233,0,1 0/0:.:387:385:1:0.26%:152,233,0,1 -Example1_ref 5644 . T . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:150,232,0,0 0/0:.:382:382:0:0%:150,232,0,0 -Example1_ref 5645 . T . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:0:0%:145,229,0,0 0/0:.:375:374:0:0%:145,229,0,0 -Example1_ref 5646 . A . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:378:0:0%:145,233,0,0 0/0:.:378:378:0:0%:145,233,0,0 -Example1_ref 5647 . A . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:146,233,0,0 0/0:.:379:379:0:0%:146,233,0,0 -Example1_ref 5648 . C . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:380:0:0%:145,235,0,0 0/0:.:380:380:0:0%:145,235,0,0 -Example1_ref 5649 . A . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:144,231,0,0 0/0:.:375:375:0:0%:144,231,0,0 -Example1_ref 5650 . A . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:148,227,0,0 0/0:.:375:375:0:0%:148,227,0,0 -Example1_ref 5651 . A . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:148,228,0,0 0/0:.:376:376:0:0%:148,228,0,0 -Example1_ref 5652 . C . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:145,226,0,0 0/0:.:371:371:0:0%:145,226,0,0 -Example1_ref 5653 . A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:149,225,0,0 0/0:.:374:374:0:0%:149,225,0,0 -Example1_ref 5654 . T A . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:367:1:0.27%:145,222,1,0 0/0:.:368:367:1:0.27%:145,222,1,0 -Example1_ref 5655 . A . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:147,225,0,0 0/0:.:372:372:0:0%:147,225,0,0 -Example1_ref 5656 . T G . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:146,219,0,1 0/0:.:366:365:1:0.27%:146,219,0,1 -Example1_ref 5657 . T G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:138,218,1,0 0/0:.:357:356:1:0.28%:138,218,1,0 -Example1_ref 5658 . C A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=6.8802E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:359:2:0.55%:136,223,1,1 0/0:.:361:359:2:0.55%:136,223,1,1 -Example1_ref 5659 . G A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:352:1:0.28%:135,217,0,1 0/0:.:353:352:1:0.28%:135,217,0,1 -Example1_ref 5660 . G A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:356:1:0.28%:133,223,1,0 0/0:.:358:356:1:0.28%:133,223,1,0 -Example1_ref 5661 . T . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:140,220,0,0 0/0:.:360:360:0:0%:140,220,0,0 -Example1_ref 5662 . G . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:138,221,0,0 0/0:.:359:359:0:0%:138,221,0,0 -Example1_ref 5663 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:136,218,0,0 0/0:.:354:354:0:0%:136,218,0,0 -Example1_ref 5664 . T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:138,218,0,0 0/0:.:356:356:0:0%:138,218,0,0 -Example1_ref 5665 . A AC . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:133,221,1,0 0/0:.:355:354:1:0.28%:133,221,1,0 -Example1_ref 5666 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:141,221,0,0 0/0:.:362:362:0:0%:141,221,0,0 -Example1_ref 5667 . C A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=6.8804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:345:2:0.58%:128,217,0,2 0/0:.:347:345:2:0.58%:128,217,0,2 -Example1_ref 5668 . A . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:130,221,0,0 0/0:.:351:351:0:0%:130,221,0,0 -Example1_ref 5669 . T G . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=6.8804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:345:2:0.58%:127,218,0,2 0/0:.:347:345:2:0.58%:127,218,0,2 -Example1_ref 5670 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:125,217,0,0 0/0:.:342:342:0:0%:125,217,0,0 -Example1_ref 5671 . G . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:121,213,0,0 0/0:.:334:334:0:0%:121,213,0,0 -Example1_ref 5672 . G A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:117,214,1,0 0/0:.:332:331:1:0.3%:117,214,1,0 -Example1_ref 5673 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:117,211,0,0 0/0:.:328:328:0:0%:117,211,0,0 -Example1_ref 5674 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:113,210,0,0 0/0:.:323:323:0:0%:113,210,0,0 -Example1_ref 5675 . C CT . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=6.8812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:304:2:0.65%:111,193,2,0 0/0:.:308:304:2:0.65%:111,193,2,0 -Example1_ref 5676 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:113,191,0,0 0/0:.:304:304:0:0%:113,191,0,0 -Example1_ref 5677 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:0:0%:113,188,0,0 0/0:.:302:301:0:0%:113,188,0,0 -Example1_ref 5678 . T G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:113,191,0,1 0/0:.:305:304:1:0.33%:113,191,0,1 -Example1_ref 5679 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:112,192,0,0 0/0:.:304:304:0:0%:112,192,0,0 -Example1_ref 5680 . C A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:110,188,0,1 0/0:.:299:298:1:0.33%:110,188,0,1 -Example1_ref 5681 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:110,196,0,0 0/0:.:307:306:0:0%:110,196,0,0 -Example1_ref 5682 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:107,196,0,0 0/0:.:303:303:0:0%:107,196,0,0 -Example1_ref 5683 . G GA . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:103,194,0,1 0/0:.:298:297:1:0.34%:103,194,0,1 -Example1_ref 5684 . A T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:102,191,1,0 0/0:.:294:293:1:0.34%:102,191,1,0 -Example1_ref 5685 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:101,192,0,0 0/0:.:293:293:0:0%:101,192,0,0 -Example1_ref 5686 . A G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:100,193,1,0 0/0:.:294:293:1:0.34%:100,193,1,0 -Example1_ref 5687 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:97,193,0,0 0/0:.:290:290:0:0%:97,193,0,0 -Example1_ref 5688 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:99,194,0,0 0/0:.:293:293:0:0%:99,194,0,0 -Example1_ref 5689 . G A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:97,189,0,1 0/0:.:287:286:1:0.35%:97,189,0,1 -Example1_ref 5690 . G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:95,192,0,0 0/0:.:287:287:0:0%:95,192,0,0 -Example1_ref 5691 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:97,193,0,0 0/0:.:290:290:0:0%:97,193,0,0 -Example1_ref 5692 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:99,194,0,0 0/0:.:293:293:0:0%:99,194,0,0 -Example1_ref 5693 . TA T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:100,190,0,1 0/0:.:291:290:1:0.34%:100,190,0,1 -Example1_ref 5694 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:100,190,0,0 0/0:.:290:290:0:0%:100,190,0,0 -Example1_ref 5695 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:99,186,0,0 0/0:.:285:285:0:0%:99,186,0,0 -Example1_ref 5696 . A G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:101,184,0,1 0/0:.:286:285:1:0.35%:101,184,0,1 -Example1_ref 5697 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:96,188,0,0 0/0:.:284:284:0:0%:96,188,0,0 -Example1_ref 5698 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:95,185,0,0 0/0:.:280:280:0:0%:95,185,0,0 -Example1_ref 5699 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:94,184,0,0 0/0:.:278:278:0:0%:94,184,0,0 -Example1_ref 5700 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:93,189,0,0 0/0:.:282:282:0:0%:93,189,0,0 -Example1_ref 5701 . C A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:282:1:0.35%:92,190,0,1 0/0:.:284:282:1:0.35%:92,190,0,1 -Example1_ref 5702 . A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:92,189,0,0 0/0:.:281:281:0:0%:92,189,0,0 -Example1_ref 5703 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:87,191,0,0 0/0:.:278:278:0:0%:87,191,0,0 -Example1_ref 5704 . G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:85,182,0,0 0/0:.:267:267:0:0%:85,182,0,0 -Example1_ref 5705 . G GCTGTCTCT . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:1:0.36%:92,187,1,0 0/0:.:280:279:1:0.36%:92,187,1,0 -Example1_ref 5706 . T . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:96,183,0,0 0/0:.:279:279:0:0%:96,183,0,0 -Example1_ref 5707 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:95,184,0,0 0/0:.:280:279:0:0%:95,184,0,0 -Example1_ref 5708 . T C . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:279:1:0.36%:94,185,1,0 0/0:.:281:279:1:0.36%:94,185,1,0 -Example1_ref 5709 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:95,184,0,0 0/0:.:280:279:0:0%:95,184,0,0 -Example1_ref 5710 . G . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:94,183,0,0 0/0:.:277:277:0:0%:94,183,0,0 -Example1_ref 5711 . C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:93,181,0,0 0/0:.:274:274:0:0%:93,181,0,0 -Example1_ref 5712 . A G . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:91,182,1,0 0/0:.:274:273:1:0.36%:91,182,1,0 -Example1_ref 5713 . T . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:0:0%:102,176,0,0 0/0:.:279:278:0:0%:102,176,0,0 -Example1_ref 5714 . C A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:101,148,0,1 0/0:.:250:249:1:0.4%:101,148,0,1 -Example1_ref 5715 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:102,155,0,0 0/0:.:257:257:0:0%:102,155,0,0 -Example1_ref 5716 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:102,147,0,0 0/0:.:249:249:0:0%:102,147,0,0 -Example1_ref 5717 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:104,155,0,0 0/0:.:259:259:0:0%:104,155,0,0 -Example1_ref 5718 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:103,155,0,0 0/0:.:258:258:0:0%:103,155,0,0 -Example1_ref 5719 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:99,152,0,0 0/0:.:251:251:0:0%:99,152,0,0 -Example1_ref 5720 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:98,149,0,0 0/0:.:247:247:0:0%:98,149,0,0 -Example1_ref 5721 . C CCTGT . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:239:1:0.42%:92,147,1,0 0/0:.:243:239:1:0.42%:92,147,1,0 -Example1_ref 5722 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:93,112,0,0 0/0:.:205:205:0:0%:93,112,0,0 -Example1_ref 5723 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:93,112,0,0 0/0:.:205:205:0:0%:93,112,0,0 -Example1_ref 5724 . C A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:91,102,0,1 0/0:.:194:193:1:0.52%:91,102,0,1 -Example1_ref 5725 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:90,116,0,0 0/0:.:206:206:0:0%:90,116,0,0 -Example1_ref 5726 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:96,115,0,0 0/0:.:211:211:0:0%:96,115,0,0 -Example1_ref 5727 . A G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:95,117,0,1 0/0:.:213:212:1:0.47%:95,117,0,1 -Example1_ref 5728 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:0:0%:94,119,0,0 0/0:.:214:213:0:0%:94,119,0,0 -Example1_ref 5729 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:84,117,0,0 0/0:.:201:201:0:0%:84,117,0,0 -Example1_ref 5730 . T C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:85,117,0,1 0/0:.:203:202:1:0.49%:85,117,0,1 -Example1_ref 5731 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:84,118,0,0 0/0:.:202:202:0:0%:84,118,0,0 -Example1_ref 5732 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:88,111,0,0 0/0:.:199:199:0:0%:88,111,0,0 -Example1_ref 5733 . C T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:82,116,0,1 0/0:.:199:198:1:0.5%:82,116,0,1 -Example1_ref 5734 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:80,122,0,0 0/0:.:202:202:0:0%:80,122,0,0 -Example1_ref 5735 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:84,121,0,0 0/0:.:205:205:0:0%:84,121,0,0 -Example1_ref 5736 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:85,121,0,0 0/0:.:206:206:0:0%:85,121,0,0 -Example1_ref 5737 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:84,118,0,0 0/0:.:202:202:0:0%:84,118,0,0 -Example1_ref 5738 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:84,123,0,0 0/0:.:207:207:0:0%:84,123,0,0 -Example1_ref 5739 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:84,119,0,0 0/0:.:203:203:0:0%:84,119,0,0 -Example1_ref 5740 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:85,122,0,0 0/0:.:207:207:0:0%:85,122,0,0 -Example1_ref 5741 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:81,118,0,0 0/0:.:199:199:0:0%:81,118,0,0 -Example1_ref 5742 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:0:0%:84,119,0,0 0/0:.:204:203:0:0%:84,119,0,0 -Example1_ref 5743 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:85,115,0,0 0/0:.:200:200:0:0%:85,115,0,0 -Example1_ref 5744 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:83,116,0,0 0/0:.:199:199:0:0%:83,116,0,0 -Example1_ref 5745 . C A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:81,113,0,1 0/0:.:195:194:1:0.51%:81,113,0,1 -Example1_ref 5746 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:81,111,0,0 0/0:.:192:192:0:0%:81,111,0,0 -Example1_ref 5747 . C A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=6.8848E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:190:2:1.04%:81,109,1,1 0/0:.:192:190:2:1.04%:81,109,1,1 -Example1_ref 5748 . A G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:187:1:0.53%:79,108,1,0 0/0:.:188:187:1:0.53%:79,108,1,0 -Example1_ref 5749 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:81,106,0,0 0/0:.:187:187:0:0%:81,106,0,0 -Example1_ref 5750 . C A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:78,103,1,0 0/0:.:182:181:1:0.55%:78,103,1,0 -Example1_ref 5751 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:81,101,0,0 0/0:.:182:182:0:0%:81,101,0,0 -Example1_ref 5752 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:76,98,0,0 0/0:.:174:174:0:0%:76,98,0,0 -Example1_ref 5753 . C A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:77,101,0,1 0/0:.:179:178:1:0.56%:77,101,0,1 -Example1_ref 5754 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:75,104,0,0 0/0:.:179:179:0:0%:75,104,0,0 -Example1_ref 5755 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:83,104,0,0 0/0:.:187:187:0:0%:83,104,0,0 -Example1_ref 5756 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:82,106,0,0 0/0:.:188:188:0:0%:82,106,0,0 -Example1_ref 5757 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:81,107,0,0 0/0:.:188:188:0:0%:81,107,0,0 -Example1_ref 5758 . G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:84,106,0,0 0/0:.:190:190:0:0%:84,106,0,0 -Example1_ref 5759 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:83,106,0,0 0/0:.:189:189:0:0%:83,106,0,0 -Example1_ref 5760 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:81,105,0,0 0/0:.:186:186:0:0%:81,105,0,0 -Example1_ref 5761 . G GT . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:1:0.55%:75,105,0,1 0/0:.:181:180:1:0.55%:75,105,0,1 -Example1_ref 5762 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:79,105,0,0 0/0:.:184:184:0:0%:79,105,0,0 -Example1_ref 5763 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:79,103,0,0 0/0:.:182:182:0:0%:79,103,0,0 -Example1_ref 5764 . A G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:187:1:0.53%:82,105,1,0 0/0:.:189:187:1:0.53%:82,105,1,0 -Example1_ref 5765 . A AGAGACAG . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:185:1:0.54%:82,103,0,1 0/0:.:187:185:1:0.54%:82,103,0,1 -Example1_ref 5766 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:86,106,0,0 0/0:.:192:192:0:0%:86,106,0,0 -Example1_ref 5767 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:86,101,0,0 0/0:.:187:187:0:0%:86,101,0,0 -Example1_ref 5768 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:0:0%:87,102,0,0 0/0:.:190:189:0:0%:87,102,0,0 -Example1_ref 5769 . T G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:184:1:0.54%:83,101,0,1 0/0:.:186:184:1:0.54%:83,101,0,1 -Example1_ref 5770 . G C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:80,101,1,0 0/0:.:182:181:1:0.55%:80,101,1,0 -Example1_ref 5771 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:81,102,0,0 0/0:.:183:183:0:0%:81,102,0,0 -Example1_ref 5772 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:79,100,0,0 0/0:.:179:179:0:0%:79,100,0,0 -Example1_ref 5773 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:86,103,0,0 0/0:.:189:189:0:0%:86,103,0,0 -Example1_ref 5774 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:87,100,0,0 0/0:.:187:187:0:0%:87,100,0,0 -Example1_ref 5775 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:0:0%:83,98,0,0 0/0:.:182:181:0:0%:83,98,0,0 -Example1_ref 5776 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:83,97,0,0 0/0:.:180:180:0:0%:83,97,0,0 -Example1_ref 5777 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:83,99,0,0 0/0:.:182:182:0:0%:83,99,0,0 -Example1_ref 5778 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:178:178:0:0%:81,97,0,0 -Example1_ref 5779 . G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:82,94,0,0 0/0:.:176:176:0:0%:82,94,0,0 -Example1_ref 5780 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:82,94,0,0 0/0:.:176:176:0:0%:82,94,0,0 -Example1_ref 5781 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:80,91,0,0 0/0:.:171:171:0:0%:80,91,0,0 -Example1_ref 5782 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:80,88,0,0 0/0:.:168:168:0:0%:80,88,0,0 -Example1_ref 5783 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:80,90,0,0 0/0:.:170:170:0:0%:80,90,0,0 -Example1_ref 5784 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:87,91,0,0 0/0:.:178:178:0:0%:87,91,0,0 -Example1_ref 5785 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:87,90,0,0 0/0:.:177:177:0:0%:87,90,0,0 -Example1_ref 5786 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:87,92,0,0 0/0:.:179:179:0:0%:87,92,0,0 -Example1_ref 5787 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:86,93,0,0 0/0:.:179:179:0:0%:86,93,0,0 -Example1_ref 5788 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:87,91,0,0 0/0:.:178:178:0:0%:87,91,0,0 -Example1_ref 5789 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:87,89,0,0 0/0:.:176:176:0:0%:87,89,0,0 -Example1_ref 5790 . TA T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:85,88,1,0 0/0:.:174:173:1:0.57%:85,88,1,0 -Example1_ref 5791 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:85,87,0,0 0/0:.:173:172:0:0%:85,87,0,0 -Example1_ref 5792 . C CCTGTCTCTTAT . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:83,87,1,0 0/0:.:171:170:1:0.58%:83,87,1,0 -Example1_ref 5793 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:85,84,0,0 0/0:.:169:169:0:0%:85,84,0,0 -Example1_ref 5794 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:83,83,0,0 0/0:.:166:166:0:0%:83,83,0,0 -Example1_ref 5795 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:84,83,0,0 0/0:.:167:167:0:0%:84,83,0,0 -Example1_ref 5796 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:85,83,0,0 0/0:.:168:168:0:0%:85,83,0,0 -Example1_ref 5797 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:166:166:0:0%:85,81,0,0 -Example1_ref 5798 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:87,80,0,0 0/0:.:167:167:0:0%:87,80,0,0 -Example1_ref 5799 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:167:167:0:0%:85,82,0,0 -Example1_ref 5800 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:85,83,0,0 0/0:.:168:168:0:0%:85,83,0,0 -Example1_ref 5801 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:166:166:0:0%:85,81,0,0 -Example1_ref 5802 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:166:166:0:0%:85,81,0,0 -Example1_ref 5803 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:166:166:0:0%:85,81,0,0 -Example1_ref 5804 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:88,82,0,0 0/0:.:170:170:0:0%:88,82,0,0 -Example1_ref 5805 . G A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:82,83,1,0 0/0:.:166:165:1:0.6%:82,83,1,0 -Example1_ref 5806 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:81,81,0,0 0/0:.:162:162:0:0%:81,81,0,0 -Example1_ref 5807 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:86,76,0,0 0/0:.:162:162:0:0%:86,76,0,0 -Example1_ref 5808 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:161:161:0:0%:85,76,0,0 -Example1_ref 5809 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:86,75,0,0 0/0:.:161:161:0:0%:86,75,0,0 -Example1_ref 5810 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:160:160:0:0%:83,77,0,0 -Example1_ref 5811 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:83,78,0,0 0/0:.:161:161:0:0%:83,78,0,0 -Example1_ref 5812 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:164:164:0:0%:88,76,0,0 -Example1_ref 5813 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:163:163:0:0%:87,76,0,0 -Example1_ref 5814 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:89,75,0,0 0/0:.:164:164:0:0%:89,75,0,0 -Example1_ref 5815 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:89,76,0,0 0/0:.:165:165:0:0%:89,76,0,0 -Example1_ref 5816 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 5817 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:160:160:0:0%:84,76,0,0 -Example1_ref 5818 . G T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:83,77,0,1 0/0:.:161:160:1:0.62%:83,77,0,1 -Example1_ref 5819 . A G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:85,74,0,1 0/0:.:160:159:1:0.62%:85,74,0,1 -Example1_ref 5820 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:84,73,0,0 0/0:.:157:157:0:0%:84,73,0,0 -Example1_ref 5821 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 5822 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:155:155:0:0%:85,70,0,0 -Example1_ref 5823 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:84,73,0,0 0/0:.:157:157:0:0%:84,73,0,0 -Example1_ref 5824 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:88,73,0,0 0/0:.:161:161:0:0%:88,73,0,0 -Example1_ref 5825 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:158:158:0:0%:85,73,0,0 -Example1_ref 5826 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:85,71,0,0 0/0:.:156:156:0:0%:85,71,0,0 -Example1_ref 5827 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:161:161:0:0%:85,76,0,0 -Example1_ref 5828 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:82,74,0,0 0/0:.:156:156:0:0%:82,74,0,0 -Example1_ref 5829 . G GAC . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:84,72,0,1 0/0:.:157:156:1:0.64%:84,72,0,1 -Example1_ref 5830 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:80,74,0,0 0/0:.:154:154:0:0%:80,74,0,0 -Example1_ref 5831 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:81,75,0,0 0/0:.:156:156:0:0%:81,75,0,0 -Example1_ref 5832 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:81,74,0,0 0/0:.:155:155:0:0%:81,74,0,0 -Example1_ref 5833 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:81,75,0,0 0/0:.:156:156:0:0%:81,75,0,0 -Example1_ref 5834 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:80,74,0,0 0/0:.:154:154:0:0%:80,74,0,0 -Example1_ref 5835 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:83,73,0,0 0/0:.:156:156:0:0%:83,73,0,0 -Example1_ref 5836 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 5837 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 5838 . C T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:85,73,1,0 0/0:.:159:158:1:0.63%:85,73,1,0 -Example1_ref 5839 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:86,73,0,0 0/0:.:159:159:0:0%:86,73,0,0 -Example1_ref 5840 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:84,72,0,0 0/0:.:156:156:0:0%:84,72,0,0 -Example1_ref 5841 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:85,72,0,0 0/0:.:157:157:0:0%:85,72,0,0 -Example1_ref 5842 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:155:155:0:0%:82,73,0,0 -Example1_ref 5843 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:155:155:0:0%:82,73,0,0 -Example1_ref 5844 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:81,73,0,0 0/0:.:154:154:0:0%:81,73,0,0 -Example1_ref 5845 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 5846 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:155:155:0:0%:82,73,0,0 -Example1_ref 5847 . C A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:150:1:0.66%:78,72,0,1 0/0:.:153:150:1:0.66%:78,72,0,1 -Example1_ref 5848 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:152:152:0:0%:83,69,0,0 -Example1_ref 5849 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:83,70,0,0 0/0:.:153:153:0:0%:83,70,0,0 -Example1_ref 5850 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:81,73,0,0 0/0:.:154:154:0:0%:81,73,0,0 -Example1_ref 5851 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:78,74,0,0 0/0:.:152:152:0:0%:78,74,0,0 -Example1_ref 5852 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 5853 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:159:159:0:0%:85,74,0,0 -Example1_ref 5854 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:159:159:0:0%:85,74,0,0 -Example1_ref 5855 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:83,72,0,0 0/0:.:155:155:0:0%:83,72,0,0 -Example1_ref 5856 . C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:81,72,0,0 0/0:.:153:153:0:0%:81,72,0,0 -Example1_ref 5857 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:83,68,0,0 0/0:.:151:151:0:0%:83,68,0,0 -Example1_ref 5858 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:85,68,0,0 0/0:.:153:153:0:0%:85,68,0,0 -Example1_ref 5859 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:84,69,0,0 0/0:.:153:153:0:0%:84,69,0,0 -Example1_ref 5860 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:154:154:0:0%:85,69,0,0 -Example1_ref 5861 . T A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:85,63,0,1 0/0:.:149:148:1:0.67%:85,63,0,1 -Example1_ref 5862 . C T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:87,69,0,1 0/0:.:157:156:1:0.64%:87,69,0,1 -Example1_ref 5863 . C A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:85,64,0,1 0/0:.:150:149:1:0.67%:85,64,0,1 -Example1_ref 5864 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:81,67,0,0 0/0:.:148:148:0:0%:81,67,0,0 -Example1_ref 5865 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:82,64,0,0 0/0:.:146:146:0:0%:82,64,0,0 -Example1_ref 5866 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:93,66,0,0 0/0:.:159:159:0:0%:93,66,0,0 -Example1_ref 5867 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:90,67,0,0 0/0:.:157:157:0:0%:90,67,0,0 -Example1_ref 5868 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:161:161:0:0%:92,69,0,0 -Example1_ref 5869 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:91,71,0,0 0/0:.:162:162:0:0%:91,71,0,0 -Example1_ref 5870 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 5871 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:156:156:0:0%:90,66,0,0 -Example1_ref 5872 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:89,67,0,0 0/0:.:156:156:0:0%:89,67,0,0 -Example1_ref 5873 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:0:0%:89,66,0,0 0/0:.:156:155:0:0%:89,66,0,0 -Example1_ref 5874 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:156:156:0:0%:88,68,0,0 -Example1_ref 5875 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:89,66,0,0 0/0:.:155:155:0:0%:89,66,0,0 -Example1_ref 5876 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:89,67,0,0 0/0:.:156:156:0:0%:89,67,0,0 -Example1_ref 5877 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:155:155:0:0%:88,67,0,0 -Example1_ref 5878 . T TG . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:91,64,0,1 0/0:.:156:155:1:0.64%:91,64,0,1 -Example1_ref 5879 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:154:154:0:0%:91,63,0,0 -Example1_ref 5880 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:90,63,0,0 0/0:.:153:153:0:0%:90,63,0,0 -Example1_ref 5881 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:154:154:0:0%:90,64,0,0 -Example1_ref 5882 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:154:154:0:0%:91,63,0,0 -Example1_ref 5883 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:149:149:0:0%:87,62,0,0 -Example1_ref 5884 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:150:150:0:0%:87,63,0,0 -Example1_ref 5885 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:91,64,0,0 0/0:.:155:155:0:0%:91,64,0,0 -Example1_ref 5886 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:154:154:0:0%:91,63,0,0 -Example1_ref 5887 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 5888 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:148:148:0:0%:90,58,0,0 -Example1_ref 5889 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:90,60,0,0 0/0:.:150:150:0:0%:90,60,0,0 -Example1_ref 5890 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 5891 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:154:154:0:0%:91,63,0,0 -Example1_ref 5892 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:92,63,0,0 0/0:.:155:155:0:0%:92,63,0,0 -Example1_ref 5893 . A ATCCTG . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:89,63,1,0 0/0:.:153:152:1:0.65%:89,63,1,0 -Example1_ref 5894 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:144:144:0:0%:82,62,0,0 -Example1_ref 5895 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:81,63,0,0 0/0:.:144:144:0:0%:81,63,0,0 -Example1_ref 5896 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:80,63,0,0 0/0:.:143:143:0:0%:80,63,0,0 -Example1_ref 5897 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:82,66,0,0 0/0:.:148:148:0:0%:82,66,0,0 -Example1_ref 5898 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:83,66,0,0 0/0:.:149:149:0:0%:83,66,0,0 -Example1_ref 5899 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:82,66,0,0 0/0:.:148:148:0:0%:82,66,0,0 -Example1_ref 5900 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:80,66,0,0 0/0:.:146:146:0:0%:80,66,0,0 -Example1_ref 5901 . GGT G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:79,65,0,1 0/0:.:145:144:1:0.69%:79,65,0,1 -Example1_ref 5902 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:0:0%:77,63,0,0 0/0:.:141:140:0:0%:77,63,0,0 -Example1_ref 5903 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:0:0%:72,64,0,0 0/0:.:137:136:0:0%:72,64,0,0 -Example1_ref 5904 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:133:133:0:0%:71,62,0,0 -Example1_ref 5905 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:69,63,0,0 0/0:.:132:132:0:0%:69,63,0,0 -Example1_ref 5906 . ATTC A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:72,63,0,1 0/0:.:136:135:1:0.74%:72,63,0,1 -Example1_ref 5907 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:71,60,0,0 0/0:.:132:131:0:0%:71,60,0,0 -Example1_ref 5908 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:0:0%:70,62,0,0 0/0:.:133:132:0:0%:70,62,0,0 -Example1_ref 5909 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:0:0%:69,63,0,0 0/0:.:133:132:0:0%:69,63,0,0 -Example1_ref 5910 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:69,64,0,0 0/0:.:133:133:0:0%:69,64,0,0 -Example1_ref 5911 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:74,66,0,0 0/0:.:140:140:0:0%:74,66,0,0 -Example1_ref 5912 . T G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:76,65,0,1 0/0:.:142:141:1:0.7%:76,65,0,1 -Example1_ref 5913 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:75,67,0,0 0/0:.:142:142:0:0%:75,67,0,0 -Example1_ref 5914 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:73,63,0,0 0/0:.:136:136:0:0%:73,63,0,0 -Example1_ref 5915 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:137:137:0:0%:73,64,0,0 -Example1_ref 5916 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:137:137:0:0%:73,64,0,0 -Example1_ref 5917 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:73,63,0,0 0/0:.:136:136:0:0%:73,63,0,0 -Example1_ref 5918 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:138:138:0:0%:75,63,0,0 -Example1_ref 5919 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:138:138:0:0%:75,63,0,0 -Example1_ref 5920 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:136:136:0:0%:74,62,0,0 -Example1_ref 5921 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:77,61,0,0 0/0:.:138:138:0:0%:77,61,0,0 -Example1_ref 5922 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 5923 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:134:134:0:0%:77,57,0,0 -Example1_ref 5924 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:128:128:0:0%:76,52,0,0 -Example1_ref 5925 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:130:130:0:0%:78,52,0,0 -Example1_ref 5926 . CA C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:74,51,1,0 0/0:.:126:125:1:0.79%:74,51,1,0 -Example1_ref 5927 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:129:129:0:0%:76,53,0,0 -Example1_ref 5928 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:129:129:0:0%:76,53,0,0 -Example1_ref 5929 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:128:128:0:0%:76,52,0,0 -Example1_ref 5930 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:76,51,0,0 0/0:.:127:127:0:0%:76,51,0,0 -Example1_ref 5931 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:130:130:0:0%:77,53,0,0 -Example1_ref 5932 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:128:128:0:0%:75,53,0,0 -Example1_ref 5933 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:132:132:0:0%:78,54,0,0 -Example1_ref 5934 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:130:130:0:0%:77,53,0,0 -Example1_ref 5935 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:79,56,0,0 0/0:.:135:135:0:0%:79,56,0,0 -Example1_ref 5936 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 5937 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 5938 . TG T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:82,52,0,1 0/0:.:135:134:1:0.74%:82,52,0,1 -Example1_ref 5939 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:134:134:0:0%:81,53,0,0 -Example1_ref 5940 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:86,54,0,0 0/0:.:140:140:0:0%:86,54,0,0 -Example1_ref 5941 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:0:0%:88,59,0,0 0/0:.:148:147:0:0%:88,59,0,0 -Example1_ref 5942 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:88,57,0,0 0/0:.:145:145:0:0%:88,57,0,0 -Example1_ref 5943 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:89,55,0,0 0/0:.:144:144:0:0%:89,55,0,0 -Example1_ref 5944 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:89,57,0,0 0/0:.:146:146:0:0%:89,57,0,0 -Example1_ref 5945 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:90,56,0,0 0/0:.:146:146:0:0%:90,56,0,0 -Example1_ref 5946 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:91,54,0,0 0/0:.:145:145:0:0%:91,54,0,0 -Example1_ref 5947 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:84,54,0,0 0/0:.:138:138:0:0%:84,54,0,0 -Example1_ref 5948 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:84,54,0,0 0/0:.:138:138:0:0%:84,54,0,0 -Example1_ref 5949 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:89,53,0,0 0/0:.:142:142:0:0%:89,53,0,0 -Example1_ref 5950 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:89,54,0,0 0/0:.:143:143:0:0%:89,54,0,0 -Example1_ref 5951 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:92,55,0,0 0/0:.:147:147:0:0%:92,55,0,0 -Example1_ref 5952 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:92,57,0,0 0/0:.:149:149:0:0%:92,57,0,0 -Example1_ref 5953 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:91,59,0,0 0/0:.:150:150:0:0%:91,59,0,0 -Example1_ref 5954 . C A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:88,54,0,1 0/0:.:143:142:1:0.7%:88,54,0,1 -Example1_ref 5955 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:87,57,0,0 0/0:.:144:144:0:0%:87,57,0,0 -Example1_ref 5956 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:88,57,0,0 0/0:.:145:145:0:0%:88,57,0,0 -Example1_ref 5957 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:87,56,0,0 0/0:.:143:143:0:0%:87,56,0,0 -Example1_ref 5958 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:87,58,0,0 0/0:.:145:145:0:0%:87,58,0,0 -Example1_ref 5959 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:148:148:0:0%:87,61,0,0 -Example1_ref 5960 . AT A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:85,60,0,1 0/0:.:146:145:1:0.68%:85,60,0,1 -Example1_ref 5961 . T A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:147:1:0.68%:87,60,0,1 0/0:.:149:147:1:0.68%:87,60,0,1 -Example1_ref 5962 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 5963 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:88,62,0,0 0/0:.:150:150:0:0%:88,62,0,0 -Example1_ref 5964 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:149:149:0:0%:87,62,0,0 -Example1_ref 5965 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:149:149:0:0%:87,62,0,0 -Example1_ref 5966 . T G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:87,61,0,1 0/0:.:149:148:1:0.67%:87,61,0,1 -Example1_ref 5967 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:83,63,0,0 0/0:.:146:146:0:0%:83,63,0,0 -Example1_ref 5968 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:85,64,0,0 0/0:.:149:149:0:0%:85,64,0,0 -Example1_ref 5969 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:149:149:0:0%:87,62,0,0 -Example1_ref 5970 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:85,62,0,0 0/0:.:147:147:0:0%:85,62,0,0 -Example1_ref 5971 . A T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:151:1:0.66%:86,65,1,0 0/0:.:153:151:1:0.66%:86,65,1,0 -Example1_ref 5972 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:82,67,0,0 0/0:.:149:149:0:0%:82,67,0,0 -Example1_ref 5973 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:155:155:0:0%:88,67,0,0 -Example1_ref 5974 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:81,69,0,0 0/0:.:150:150:0:0%:81,69,0,0 -Example1_ref 5975 . G A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=6.888E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:143:2:1.38%:78,65,0,2 0/0:.:145:143:2:1.38%:78,65,0,2 -Example1_ref 5976 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:79,67,0,0 0/0:.:146:146:0:0%:79,67,0,0 -Example1_ref 5977 . G A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=6.888E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:143:2:1.38%:78,65,0,2 0/0:.:145:143:2:1.38%:78,65,0,2 -Example1_ref 5978 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:79,66,0,0 0/0:.:145:145:0:0%:79,66,0,0 -Example1_ref 5979 . A AG . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=6.8878E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:146:2:1.35%:81,65,0,2 0/0:.:148:146:2:1.35%:81,65,0,2 -Example1_ref 5980 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:92,65,0,0 0/0:.:157:157:0:0%:92,65,0,0 -Example1_ref 5981 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:89,66,0,0 0/0:.:155:155:0:0%:89,66,0,0 -Example1_ref 5982 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 5983 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:161:161:0:0%:93,68,0,0 -Example1_ref 5984 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 5985 . A T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:92,70,0,1 0/0:.:163:162:1:0.61%:92,70,0,1 -Example1_ref 5986 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:174:174:0:0%:90,84,0,0 -Example1_ref 5987 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:85,85,0,0 0/0:.:170:170:0:0%:85,85,0,0 -Example1_ref 5988 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:89,86,0,0 0/0:.:175:175:0:0%:89,86,0,0 -Example1_ref 5989 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:167:167:0:0%:85,82,0,0 -Example1_ref 5990 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:171:171:0:0%:87,84,0,0 -Example1_ref 5991 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:0:0%:85,83,0,0 0/0:.:169:168:0:0%:85,83,0,0 -Example1_ref 5992 . G C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:170:1:0.58%:85,85,1,0 0/0:.:172:170:1:0.58%:85,85,1,0 -Example1_ref 5993 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:171:171:0:0%:87,84,0,0 -Example1_ref 5994 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:88,87,0,0 0/0:.:175:175:0:0%:88,87,0,0 -Example1_ref 5995 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:90,88,0,0 0/0:.:178:178:0:0%:90,88,0,0 -Example1_ref 5996 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:91,89,0,0 0/0:.:181:180:0:0%:91,89,0,0 -Example1_ref 5997 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:0:0%:92,89,0,0 0/0:.:182:181:0:0%:92,89,0,0 -Example1_ref 5998 . G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:92,91,0,0 0/0:.:183:183:0:0%:92,91,0,0 -Example1_ref 5999 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:92,91,0,0 0/0:.:183:183:0:0%:92,91,0,0 -Example1_ref 6000 . C T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:92,87,0,1 0/0:.:180:179:1:0.56%:92,87,0,1 -Example1_ref 6001 . A T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:92,90,0,1 0/0:.:183:182:1:0.55%:92,90,0,1 -Example1_ref 6002 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:90,91,0,0 0/0:.:181:181:0:0%:90,91,0,0 -Example1_ref 6003 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:90,93,0,0 0/0:.:183:183:0:0%:90,93,0,0 -Example1_ref 6004 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:89,93,0,0 0/0:.:182:182:0:0%:89,93,0,0 -Example1_ref 6005 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:89,93,0,0 0/0:.:182:182:0:0%:89,93,0,0 -Example1_ref 6006 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:91,94,0,0 0/0:.:185:185:0:0%:91,94,0,0 -Example1_ref 6007 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:91,93,0,0 0/0:.:184:184:0:0%:91,93,0,0 -Example1_ref 6008 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:99,93,0,0 0/0:.:192:192:0:0%:99,93,0,0 -Example1_ref 6009 . C A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:98,92,0,1 0/0:.:191:190:1:0.52%:98,92,0,1 -Example1_ref 6010 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:98,94,0,0 0/0:.:192:192:0:0%:98,94,0,0 -Example1_ref 6011 . TA T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:99,93,0,1 0/0:.:193:192:1:0.52%:99,93,0,1 -Example1_ref 6012 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:0:0%:98,93,0,0 0/0:.:192:191:0:0%:98,93,0,0 -Example1_ref 6013 . G T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:97,93,1,0 0/0:.:191:190:1:0.52%:97,93,1,0 -Example1_ref 6014 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:98,92,0,0 0/0:.:190:190:0:0%:98,92,0,0 -Example1_ref 6015 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:99,92,0,0 0/0:.:191:191:0:0%:99,92,0,0 -Example1_ref 6016 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:100,91,0,0 0/0:.:191:191:0:0%:100,91,0,0 -Example1_ref 6017 . C T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:102,88,0,1 0/0:.:191:190:1:0.52%:102,88,0,1 -Example1_ref 6018 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:102,87,0,0 0/0:.:189:189:0:0%:102,87,0,0 -Example1_ref 6019 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:100,88,0,0 0/0:.:188:188:0:0%:100,88,0,0 -Example1_ref 6020 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:100,84,0,0 0/0:.:184:184:0:0%:100,84,0,0 -Example1_ref 6021 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:102,88,0,0 0/0:.:190:190:0:0%:102,88,0,0 -Example1_ref 6022 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:100,88,0,0 0/0:.:188:188:0:0%:100,88,0,0 -Example1_ref 6023 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:0:0%:98,88,0,0 0/0:.:187:186:0:0%:98,88,0,0 -Example1_ref 6024 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:98,87,0,0 0/0:.:185:185:0:0%:98,87,0,0 -Example1_ref 6025 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:97,87,0,0 0/0:.:184:184:0:0%:97,87,0,0 -Example1_ref 6026 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:110,87,0,0 0/0:.:197:197:0:0%:110,87,0,0 -Example1_ref 6027 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:110,92,0,0 0/0:.:202:202:0:0%:110,92,0,0 -Example1_ref 6028 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:104,95,0,0 0/0:.:199:199:0:0%:104,95,0,0 -Example1_ref 6029 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:113,96,0,0 0/0:.:209:209:0:0%:113,96,0,0 -Example1_ref 6030 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:115,95,0,0 0/0:.:210:210:0:0%:115,95,0,0 -Example1_ref 6031 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:113,94,0,0 0/0:.:207:207:0:0%:113,94,0,0 -Example1_ref 6032 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:0:0%:113,94,0,0 0/0:.:208:207:0:0%:113,94,0,0 -Example1_ref 6033 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:114,92,0,0 0/0:.:206:206:0:0%:114,92,0,0 -Example1_ref 6034 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:114,97,0,0 0/0:.:211:211:0:0%:114,97,0,0 -Example1_ref 6035 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:112,95,0,0 0/0:.:207:207:0:0%:112,95,0,0 -Example1_ref 6036 . C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:0:0%:105,92,0,0 0/0:.:198:197:0:0%:105,92,0,0 -Example1_ref 6037 . C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:199:199:0:0%:105,94,0,0 -Example1_ref 6038 . C A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:112,90,0,1 0/0:.:203:202:1:0.49%:112,90,0,1 -Example1_ref 6039 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:115,93,0,0 0/0:.:208:208:0:0%:115,93,0,0 -Example1_ref 6040 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:115,96,0,0 0/0:.:211:211:0:0%:115,96,0,0 -Example1_ref 6041 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:115,95,0,0 0/0:.:210:210:0:0%:115,95,0,0 -Example1_ref 6042 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:113,97,0,0 0/0:.:210:210:0:0%:113,97,0,0 -Example1_ref 6043 . G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:0:0%:115,96,0,0 0/0:.:212:211:0:0%:115,96,0,0 -Example1_ref 6044 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:108,94,0,0 0/0:.:202:202:0:0%:108,94,0,0 -Example1_ref 6045 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:112,96,0,0 0/0:.:208:208:0:0%:112,96,0,0 -Example1_ref 6046 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:114,98,0,0 0/0:.:212:212:0:0%:114,98,0,0 -Example1_ref 6047 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:110,98,0,0 0/0:.:208:208:0:0%:110,98,0,0 -Example1_ref 6048 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:111,97,0,0 0/0:.:208:208:0:0%:111,97,0,0 -Example1_ref 6049 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:112,97,0,0 0/0:.:209:209:0:0%:112,97,0,0 -Example1_ref 6050 . G . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:110,101,0,0 0/0:.:211:211:0:0%:110,101,0,0 -Example1_ref 6051 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:106,101,0,0 0/0:.:207:207:0:0%:106,101,0,0 -Example1_ref 6052 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:214:214:0:0%:112,102,0,0 -Example1_ref 6053 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:214:214:0:0%:112,102,0,0 -Example1_ref 6054 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:215:215:0:0%:113,102,0,0 -Example1_ref 6055 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:215:215:0:0%:113,102,0,0 -Example1_ref 6056 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:215:215:0:0%:113,102,0,0 -Example1_ref 6057 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:214:214:0:0%:112,102,0,0 -Example1_ref 6058 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:107,100,0,0 0/0:.:207:207:0:0%:107,100,0,0 -Example1_ref 6059 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:112,98,0,0 0/0:.:210:210:0:0%:112,98,0,0 -Example1_ref 6060 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:113,98,0,0 0/0:.:211:211:0:0%:113,98,0,0 -Example1_ref 6061 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:113,97,0,0 0/0:.:210:210:0:0%:113,97,0,0 -Example1_ref 6062 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:110,99,0,0 0/0:.:209:209:0:0%:110,99,0,0 -Example1_ref 6063 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:113,98,0,0 0/0:.:211:211:0:0%:113,98,0,0 -Example1_ref 6064 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:109,97,0,0 0/0:.:206:206:0:0%:109,97,0,0 -Example1_ref 6065 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:114,98,0,0 0/0:.:212:212:0:0%:114,98,0,0 -Example1_ref 6066 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:113,98,0,0 0/0:.:211:211:0:0%:113,98,0,0 -Example1_ref 6067 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:115,101,0,0 0/0:.:216:216:0:0%:115,101,0,0 -Example1_ref 6068 . A C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:115,100,0,1 0/0:.:216:215:1:0.46%:115,100,0,1 -Example1_ref 6069 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:115,100,0,0 0/0:.:215:215:0:0%:115,100,0,0 -Example1_ref 6070 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:119,101,0,0 0/0:.:220:220:0:0%:119,101,0,0 -Example1_ref 6071 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:120,100,0,0 0/0:.:220:220:0:0%:120,100,0,0 -Example1_ref 6072 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:119,101,0,0 0/0:.:220:220:0:0%:119,101,0,0 -Example1_ref 6073 . G T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:104,103,1,0 0/0:.:208:207:1:0.48%:104,103,1,0 -Example1_ref 6074 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:112,101,0,0 0/0:.:213:213:0:0%:112,101,0,0 -Example1_ref 6075 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:209:209:0:0%:109,100,0,0 -Example1_ref 6076 . A T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:114,102,1,0 0/0:.:217:216:1:0.46%:114,102,1,0 -Example1_ref 6077 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:116,103,0,0 0/0:.:219:219:0:0%:116,103,0,0 -Example1_ref 6078 . C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:119,103,0,0 0/0:.:222:222:0:0%:119,103,0,0 -Example1_ref 6079 . T C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:216:1:0.46%:117,99,1,0 0/0:.:218:216:1:0.46%:117,99,1,0 -Example1_ref 6080 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:122,103,0,0 0/0:.:225:225:0:0%:122,103,0,0 -Example1_ref 6081 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:122,106,0,0 0/0:.:228:228:0:0%:122,106,0,0 -Example1_ref 6082 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:119,106,0,0 0/0:.:225:225:0:0%:119,106,0,0 -Example1_ref 6083 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:120,107,0,0 0/0:.:227:227:0:0%:120,107,0,0 -Example1_ref 6084 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:120,109,0,0 0/0:.:229:229:0:0%:120,109,0,0 -Example1_ref 6085 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:119,105,0,0 0/0:.:224:224:0:0%:119,105,0,0 -Example1_ref 6086 . C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:121,110,0,0 0/0:.:231:231:0:0%:121,110,0,0 -Example1_ref 6087 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:120,109,0,0 0/0:.:229:229:0:0%:120,109,0,0 -Example1_ref 6088 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:124,110,0,0 0/0:.:234:234:0:0%:124,110,0,0 -Example1_ref 6089 . G T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:115,109,1,0 0/0:.:225:224:1:0.44%:115,109,1,0 -Example1_ref 6090 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:119,109,0,0 0/0:.:228:228:0:0%:119,109,0,0 -Example1_ref 6091 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:126,112,0,0 0/0:.:238:238:0:0%:126,112,0,0 -Example1_ref 6092 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:131,113,0,0 0/0:.:244:244:0:0%:131,113,0,0 -Example1_ref 6093 . C . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:132,113,0,0 0/0:.:245:245:0:0%:132,113,0,0 -Example1_ref 6094 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:131,111,0,0 0/0:.:242:242:0:0%:131,111,0,0 -Example1_ref 6095 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:131,112,0,0 0/0:.:243:243:0:0%:131,112,0,0 -Example1_ref 6096 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:132,116,0,0 0/0:.:248:248:0:0%:132,116,0,0 -Example1_ref 6097 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:132,115,0,0 0/0:.:247:247:0:0%:132,115,0,0 -Example1_ref 6098 . C A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:132,114,0,1 0/0:.:247:246:1:0.4%:132,114,0,1 -Example1_ref 6099 . C A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:131,112,0,1 0/0:.:244:243:1:0.41%:131,112,0,1 -Example1_ref 6100 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:131,116,0,0 0/0:.:247:247:0:0%:131,116,0,0 -Example1_ref 6101 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:128,113,0,0 0/0:.:241:241:0:0%:128,113,0,0 -Example1_ref 6102 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:126,113,0,0 0/0:.:239:239:0:0%:126,113,0,0 -Example1_ref 6103 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:128,115,0,0 0/0:.:243:243:0:0%:128,115,0,0 -Example1_ref 6104 . G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:127,116,0,0 0/0:.:243:243:0:0%:127,116,0,0 -Example1_ref 6105 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:129,117,0,0 0/0:.:246:246:0:0%:129,117,0,0 -Example1_ref 6106 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:126,118,0,0 0/0:.:244:244:0:0%:126,118,0,0 -Example1_ref 6107 . C A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:121,117,1,0 0/0:.:239:238:1:0.42%:121,117,1,0 -Example1_ref 6108 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:126,119,0,0 0/0:.:245:245:0:0%:126,119,0,0 -Example1_ref 6109 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:126,119,0,0 0/0:.:245:245:0:0%:126,119,0,0 -Example1_ref 6110 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:119,119,0,0 0/0:.:238:238:0:0%:119,119,0,0 -Example1_ref 6111 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:125,119,0,0 0/0:.:244:244:0:0%:125,119,0,0 -Example1_ref 6112 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:123,117,0,0 0/0:.:240:240:0:0%:123,117,0,0 -Example1_ref 6113 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:128,118,0,0 0/0:.:246:246:0:0%:128,118,0,0 -Example1_ref 6114 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:124,120,0,0 0/0:.:244:244:0:0%:124,120,0,0 -Example1_ref 6115 . A C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:126,120,0,1 0/0:.:247:246:1:0.4%:126,120,0,1 -Example1_ref 6116 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:128,120,0,0 0/0:.:248:248:0:0%:128,120,0,0 -Example1_ref 6117 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:127,120,0,0 0/0:.:247:247:0:0%:127,120,0,0 -Example1_ref 6118 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:127,121,0,0 0/0:.:248:248:0:0%:127,121,0,0 -Example1_ref 6119 . T A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:126,122,1,0 0/0:.:249:248:1:0.4%:126,122,1,0 -Example1_ref 6120 . C . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:124,116,0,0 0/0:.:240:240:0:0%:124,116,0,0 -Example1_ref 6121 . A AG . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:124,121,0,1 0/0:.:246:245:1:0.41%:124,121,0,1 -Example1_ref 6122 . C CTGTCTCTT . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:127,120,1,0 0/0:.:248:247:1:0.4%:127,120,1,0 -Example1_ref 6123 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:123,124,0,0 0/0:.:247:247:0:0%:123,124,0,0 -Example1_ref 6124 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:119,121,0,0 0/0:.:240:240:0:0%:119,121,0,0 -Example1_ref 6125 . C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:120,121,0,0 0/0:.:241:241:0:0%:120,121,0,0 -Example1_ref 6126 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:119,122,0,0 0/0:.:241:241:0:0%:119,122,0,0 -Example1_ref 6127 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:117,123,0,0 0/0:.:240:240:0:0%:117,123,0,0 -Example1_ref 6128 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:119,123,0,0 0/0:.:242:242:0:0%:119,123,0,0 -Example1_ref 6129 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:112,122,0,0 0/0:.:234:234:0:0%:112,122,0,0 -Example1_ref 6130 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:111,125,0,0 0/0:.:236:236:0:0%:111,125,0,0 -Example1_ref 6131 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:112,118,0,0 0/0:.:230:230:0:0%:112,118,0,0 -Example1_ref 6132 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:112,118,0,0 0/0:.:230:230:0:0%:112,118,0,0 -Example1_ref 6133 . G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:117,116,0,0 0/0:.:233:233:0:0%:117,116,0,0 -Example1_ref 6134 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:238:238:0:0%:122,116,0,0 -Example1_ref 6135 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:121,114,0,0 0/0:.:235:235:0:0%:121,114,0,0 -Example1_ref 6136 . C . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:114,114,0,0 0/0:.:228:228:0:0%:114,114,0,0 -Example1_ref 6137 . C G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:1:0.43%:116,116,1,0 0/0:.:233:232:1:0.43%:116,116,1,0 -Example1_ref 6138 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:119,118,0,0 0/0:.:237:237:0:0%:119,118,0,0 -Example1_ref 6139 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:121,118,0,0 0/0:.:239:239:0:0%:121,118,0,0 -Example1_ref 6140 . G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:118,115,0,0 0/0:.:233:233:0:0%:118,115,0,0 -Example1_ref 6141 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:118,117,0,0 0/0:.:235:235:0:0%:118,117,0,0 -Example1_ref 6142 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:120,115,0,0 0/0:.:235:235:0:0%:120,115,0,0 -Example1_ref 6143 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:119,117,0,0 0/0:.:236:236:0:0%:119,117,0,0 -Example1_ref 6144 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:117,116,0,0 0/0:.:233:233:0:0%:117,116,0,0 -Example1_ref 6145 . G T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:120,116,1,0 0/0:.:237:236:1:0.42%:120,116,1,0 -Example1_ref 6146 . C . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:122,114,0,0 0/0:.:236:236:0:0%:122,114,0,0 -Example1_ref 6147 . AT A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:118,120,1,0 0/0:.:239:238:1:0.42%:118,120,1,0 -Example1_ref 6148 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:119,118,0,0 0/0:.:237:237:0:0%:119,118,0,0 -Example1_ref 6149 . T TC . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=6.8832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:228:2:0.87%:111,117,2,0 0/0:.:231:228:2:0.87%:111,117,2,0 -Example1_ref 6150 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:232:0:0%:116,116,0,0 0/0:.:234:232:0:0%:116,116,0,0 -Example1_ref 6151 . G A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:114,119,1,0 0/0:.:234:233:1:0.43%:114,119,1,0 -Example1_ref 6152 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:119,118,0,0 0/0:.:237:237:0:0%:119,118,0,0 -Example1_ref 6153 . C . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:118,114,0,0 0/0:.:232:232:0:0%:118,114,0,0 -Example1_ref 6154 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:239:239:0:0%:120,119,0,0 -Example1_ref 6155 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:118,119,0,0 0/0:.:237:237:0:0%:118,119,0,0 -Example1_ref 6156 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:120,120,0,0 0/0:.:240:240:0:0%:120,120,0,0 -Example1_ref 6157 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:115,119,0,0 0/0:.:234:234:0:0%:115,119,0,0 -Example1_ref 6158 . G T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:113,120,1,0 0/0:.:234:233:1:0.43%:113,120,1,0 -Example1_ref 6159 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:118,119,0,0 0/0:.:237:237:0:0%:118,119,0,0 -Example1_ref 6160 . G . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:112,118,0,0 0/0:.:230:230:0:0%:112,118,0,0 -Example1_ref 6161 . G . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:109,119,0,0 0/0:.:228:228:0:0%:109,119,0,0 -Example1_ref 6162 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:115,117,0,0 0/0:.:232:232:0:0%:115,117,0,0 -Example1_ref 6163 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:116,119,0,0 0/0:.:235:235:0:0%:116,119,0,0 -Example1_ref 6164 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:239:239:0:0%:120,119,0,0 -Example1_ref 6165 . G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:117,120,0,0 0/0:.:237:237:0:0%:117,120,0,0 -Example1_ref 6166 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:113,121,0,0 0/0:.:234:234:0:0%:113,121,0,0 -Example1_ref 6167 . T G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:118,119,1,0 0/0:.:238:237:1:0.42%:118,119,1,0 -Example1_ref 6168 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:115,120,0,0 0/0:.:235:235:0:0%:115,120,0,0 -Example1_ref 6169 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:0:0%:112,121,0,0 0/0:.:234:233:0:0%:112,121,0,0 -Example1_ref 6170 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:110,102,0,0 0/0:.:212:212:0:0%:110,102,0,0 -Example1_ref 6171 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:213:213:0:0%:109,104,0,0 -Example1_ref 6172 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:110,103,0,0 0/0:.:213:213:0:0%:110,103,0,0 -Example1_ref 6173 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:213:213:0:0%:109,104,0,0 -Example1_ref 6174 . T C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:214:1:0.47%:110,104,1,0 0/0:.:215:214:1:0.47%:110,104,1,0 -Example1_ref 6175 . T G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:109,102,1,0 0/0:.:212:211:1:0.47%:109,102,1,0 -Example1_ref 6176 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:218:218:0:0%:114,104,0,0 -Example1_ref 6177 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:114,103,0,0 0/0:.:217:217:0:0%:114,103,0,0 -Example1_ref 6178 . A C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:114,103,0,1 0/0:.:218:217:1:0.46%:114,103,0,1 -Example1_ref 6179 . T C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:109,104,1,0 0/0:.:214:213:1:0.47%:109,104,1,0 -Example1_ref 6180 . A C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:113,103,1,0 0/0:.:217:216:1:0.46%:113,103,1,0 -Example1_ref 6181 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:110,104,0,0 0/0:.:214:214:0:0%:110,104,0,0 -Example1_ref 6182 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:216:216:0:0%:113,103,0,0 -Example1_ref 6183 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:116,103,0,0 0/0:.:219:219:0:0%:116,103,0,0 -Example1_ref 6184 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:215:215:0:0%:113,102,0,0 -Example1_ref 6185 . C T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:111,100,1,0 0/0:.:212:211:1:0.47%:111,100,1,0 -Example1_ref 6186 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:109,96,0,0 0/0:.:205:205:0:0%:109,96,0,0 -Example1_ref 6187 . A G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:109,98,1,0 0/0:.:208:207:1:0.48%:109,98,1,0 -Example1_ref 6188 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:112,97,0,0 0/0:.:209:209:0:0%:112,97,0,0 -Example1_ref 6189 . A C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:115,96,0,1 0/0:.:212:211:1:0.47%:115,96,0,1 -Example1_ref 6190 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:118,99,0,0 0/0:.:217:217:0:0%:118,99,0,0 -Example1_ref 6191 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:115,99,0,0 0/0:.:214:214:0:0%:115,99,0,0 -Example1_ref 6192 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:118,97,0,0 0/0:.:215:215:0:0%:118,97,0,0 -Example1_ref 6193 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:119,98,0,0 0/0:.:217:217:0:0%:119,98,0,0 -Example1_ref 6194 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:121,96,0,0 0/0:.:217:217:0:0%:121,96,0,0 -Example1_ref 6195 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:0:0%:125,96,0,0 0/0:.:222:221:0:0%:125,96,0,0 -Example1_ref 6196 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:124,96,0,0 0/0:.:220:220:0:0%:124,96,0,0 -Example1_ref 6197 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:114,95,0,0 0/0:.:209:209:0:0%:114,95,0,0 -Example1_ref 6198 . C A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:114,92,0,1 0/0:.:207:206:1:0.48%:114,92,0,1 -Example1_ref 6199 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:115,94,0,0 0/0:.:209:209:0:0%:115,94,0,0 -Example1_ref 6200 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:112,98,0,0 0/0:.:210:210:0:0%:112,98,0,0 -Example1_ref 6201 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:112,99,0,0 0/0:.:211:211:0:0%:112,99,0,0 -Example1_ref 6202 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:0:0%:113,100,0,0 0/0:.:214:213:0:0%:113,100,0,0 -Example1_ref 6203 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:0:0%:106,102,0,0 0/0:.:209:208:0:0%:106,102,0,0 -Example1_ref 6204 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:107,101,0,0 0/0:.:208:208:0:0%:107,101,0,0 -Example1_ref 6205 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:214:214:0:0%:112,102,0,0 -Example1_ref 6206 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:108,102,0,0 0/0:.:210:210:0:0%:108,102,0,0 -Example1_ref 6207 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:209:209:0:0%:109,100,0,0 -Example1_ref 6208 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:109,101,0,0 0/0:.:210:210:0:0%:109,101,0,0 -Example1_ref 6209 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:113,101,0,0 0/0:.:214:214:0:0%:113,101,0,0 -Example1_ref 6210 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:217:217:0:0%:116,101,0,0 -Example1_ref 6211 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:115,102,0,0 0/0:.:217:217:0:0%:115,102,0,0 -Example1_ref 6212 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:114,102,0,0 0/0:.:216:216:0:0%:114,102,0,0 -Example1_ref 6213 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:218:218:0:0%:114,104,0,0 -Example1_ref 6214 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:116,104,0,0 0/0:.:220:220:0:0%:116,104,0,0 -Example1_ref 6215 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:101,104,0,0 0/0:.:205:205:0:0%:101,104,0,0 -Example1_ref 6216 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:102,100,0,0 0/0:.:202:202:0:0%:102,100,0,0 -Example1_ref 6217 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:105,98,0,0 0/0:.:203:203:0:0%:105,98,0,0 -Example1_ref 6218 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:102,94,0,0 0/0:.:196:196:0:0%:102,94,0,0 -Example1_ref 6219 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:196:196:0:0%:100,96,0,0 -Example1_ref 6220 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:196:196:0:0%:100,96,0,0 -Example1_ref 6221 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:100,98,0,0 0/0:.:198:198:0:0%:100,98,0,0 -Example1_ref 6222 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:103,97,0,0 0/0:.:200:200:0:0%:103,97,0,0 -Example1_ref 6223 . C . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:103,98,0,0 0/0:.:201:201:0:0%:103,98,0,0 -Example1_ref 6224 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:103,97,0,0 0/0:.:200:200:0:0%:103,97,0,0 -Example1_ref 6225 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:103,99,0,0 0/0:.:202:202:0:0%:103,99,0,0 -Example1_ref 6226 . C A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:102,96,0,1 0/0:.:199:198:1:0.5%:102,96,0,1 -Example1_ref 6227 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:98,97,0,0 0/0:.:195:195:0:0%:98,97,0,0 -Example1_ref 6228 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:99,98,0,0 0/0:.:197:197:0:0%:99,98,0,0 -Example1_ref 6229 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:99,91,0,0 0/0:.:190:190:0:0%:99,91,0,0 -Example1_ref 6230 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:98,94,0,0 0/0:.:192:192:0:0%:98,94,0,0 -Example1_ref 6231 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:98,99,0,0 0/0:.:197:197:0:0%:98,99,0,0 -Example1_ref 6232 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:99,98,0,0 0/0:.:197:197:0:0%:99,98,0,0 -Example1_ref 6233 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:95,99,0,0 0/0:.:194:194:0:0%:95,99,0,0 -Example1_ref 6234 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:194:194:0:0%:96,98,0,0 -Example1_ref 6235 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:98,98,0,0 0/0:.:196:196:0:0%:98,98,0,0 -Example1_ref 6236 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:96,97,0,0 0/0:.:193:193:0:0%:96,97,0,0 -Example1_ref 6237 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:194:194:0:0%:96,98,0,0 -Example1_ref 6238 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:93,98,0,0 0/0:.:191:191:0:0%:93,98,0,0 -Example1_ref 6239 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:93,95,0,0 0/0:.:188:188:0:0%:93,95,0,0 -Example1_ref 6240 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:96,95,0,0 0/0:.:191:191:0:0%:96,95,0,0 -Example1_ref 6241 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:99,97,0,0 0/0:.:196:196:0:0%:99,97,0,0 -Example1_ref 6242 . T C . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:96,96,1,0 0/0:.:193:192:1:0.52%:96,96,1,0 -Example1_ref 6243 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:97,97,0,0 0/0:.:194:194:0:0%:97,97,0,0 -Example1_ref 6244 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:100,97,0,0 0/0:.:197:197:0:0%:100,97,0,0 -Example1_ref 6245 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:94,97,0,0 0/0:.:191:191:0:0%:94,97,0,0 -Example1_ref 6246 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:194:194:0:0%:96,98,0,0 -Example1_ref 6247 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:96,97,0,0 0/0:.:193:193:0:0%:96,97,0,0 -Example1_ref 6248 . T C . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:94,94,1,0 0/0:.:189:188:1:0.53%:94,94,1,0 -Example1_ref 6249 . T C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:94,97,1,0 0/0:.:192:191:1:0.52%:94,97,1,0 -Example1_ref 6250 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:97,97,0,0 0/0:.:194:194:0:0%:97,97,0,0 -Example1_ref 6251 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:96,96,0,0 0/0:.:192:192:0:0%:96,96,0,0 -Example1_ref 6252 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:98,97,0,0 0/0:.:195:195:0:0%:98,97,0,0 -Example1_ref 6253 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:97,101,0,0 0/0:.:198:198:0:0%:97,101,0,0 -Example1_ref 6254 . C . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:93,100,0,0 0/0:.:193:193:0:0%:93,100,0,0 -Example1_ref 6255 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:197:197:0:0%:94,103,0,0 -Example1_ref 6256 . C . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:96,101,0,0 0/0:.:197:197:0:0%:96,101,0,0 -Example1_ref 6257 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:93,103,0,0 0/0:.:196:196:0:0%:93,103,0,0 -Example1_ref 6258 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:93,103,0,0 0/0:.:196:196:0:0%:93,103,0,0 -Example1_ref 6259 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:197:197:0:0%:94,103,0,0 -Example1_ref 6260 . A AG . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:89,104,0,1 0/0:.:194:193:1:0.52%:89,104,0,1 -Example1_ref 6261 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:88,104,0,0 0/0:.:192:192:0:0%:88,104,0,0 -Example1_ref 6262 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:87,105,0,0 0/0:.:192:192:0:0%:87,105,0,0 -Example1_ref 6263 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:89,104,0,0 0/0:.:193:193:0:0%:89,104,0,0 -Example1_ref 6264 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:0:0%:91,103,0,0 0/0:.:195:194:0:0%:91,103,0,0 -Example1_ref 6265 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:0:0%:92,101,0,0 0/0:.:194:193:0:0%:92,101,0,0 -Example1_ref 6266 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:94,104,0,0 0/0:.:199:198:0:0%:94,104,0,0 -Example1_ref 6267 . T A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:196:1:0.51%:93,103,1,0 0/0:.:198:196:1:0.51%:93,103,1,0 -Example1_ref 6268 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:0:0%:94,100,0,0 0/0:.:195:194:0:0%:94,100,0,0 -Example1_ref 6269 . A ATCTGTCTC . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:94,104,1,0 0/0:.:199:198:1:0.5%:94,104,1,0 -Example1_ref 6270 . T C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=6.8845E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:197:2:1.01%:91,106,2,0 0/0:.:199:197:2:1.01%:91,106,2,0 -Example1_ref 6271 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:93,101,0,0 0/0:.:194:194:0:0%:93,101,0,0 -Example1_ref 6272 . C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:97,101,0,0 0/0:.:198:198:0:0%:97,101,0,0 -Example1_ref 6273 . A G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:99,98,0,1 0/0:.:198:197:1:0.51%:99,98,0,1 -Example1_ref 6274 . A G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:99,101,0,1 0/0:.:201:200:1:0.5%:99,101,0,1 -Example1_ref 6275 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:97,97,0,0 0/0:.:194:194:0:0%:97,97,0,0 -Example1_ref 6276 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:99,98,0,0 0/0:.:197:197:0:0%:99,98,0,0 -Example1_ref 6277 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:98,97,0,0 0/0:.:195:195:0:0%:98,97,0,0 -Example1_ref 6278 . G C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:192:1:0.52%:96,96,1,0 0/0:.:194:192:1:0.52%:96,96,1,0 -Example1_ref 6279 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:196:196:0:0%:100,96,0,0 -Example1_ref 6280 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:101,100,0,0 0/0:.:201:201:0:0%:101,100,0,0 -Example1_ref 6281 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:98,92,0,0 0/0:.:190:190:0:0%:98,92,0,0 -Example1_ref 6282 . C . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:95,94,0,0 0/0:.:189:189:0:0%:95,94,0,0 -Example1_ref 6283 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:97,96,0,0 0/0:.:193:193:0:0%:97,96,0,0 -Example1_ref 6284 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:100,111,0,0 0/0:.:211:211:0:0%:100,111,0,0 -Example1_ref 6285 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:99,109,0,0 0/0:.:208:208:0:0%:99,109,0,0 -Example1_ref 6286 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:95,107,0,0 0/0:.:202:202:0:0%:95,107,0,0 -Example1_ref 6287 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:96,107,0,0 0/0:.:203:203:0:0%:96,107,0,0 -Example1_ref 6288 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:99,107,0,0 0/0:.:206:206:0:0%:99,107,0,0 -Example1_ref 6289 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:99,108,0,0 0/0:.:207:207:0:0%:99,108,0,0 -Example1_ref 6290 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:102,105,0,0 0/0:.:207:207:0:0%:102,105,0,0 -Example1_ref 6291 . G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:99,105,0,0 0/0:.:204:204:0:0%:99,105,0,0 -Example1_ref 6292 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:205:205:0:0%:102,103,0,0 -Example1_ref 6293 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:103,105,0,0 0/0:.:208:208:0:0%:103,105,0,0 -Example1_ref 6294 . G A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:1:0.48%:103,104,1,0 0/0:.:209:207:1:0.48%:103,104,1,0 -Example1_ref 6295 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:103,104,0,0 0/0:.:207:207:0:0%:103,104,0,0 -Example1_ref 6296 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:99,108,0,0 0/0:.:207:207:0:0%:99,108,0,0 -Example1_ref 6297 . C A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:99,103,0,1 0/0:.:203:202:1:0.49%:99,103,0,1 -Example1_ref 6298 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:208:208:0:0%:100,108,0,0 -Example1_ref 6299 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:211:211:0:0%:101,110,0,0 -Example1_ref 6300 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:211:211:0:0%:101,110,0,0 -Example1_ref 6301 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:102,112,0,0 0/0:.:214:214:0:0%:102,112,0,0 -Example1_ref 6302 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:102,108,0,0 0/0:.:210:210:0:0%:102,108,0,0 -Example1_ref 6303 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:102,110,0,0 0/0:.:212:212:0:0%:102,110,0,0 -Example1_ref 6304 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:103,111,0,0 0/0:.:214:214:0:0%:103,111,0,0 -Example1_ref 6305 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:213:213:0:0%:100,113,0,0 -Example1_ref 6306 . T A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:102,109,0,1 0/0:.:212:211:1:0.47%:102,109,0,1 -Example1_ref 6307 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:101,114,0,0 0/0:.:215:215:0:0%:101,114,0,0 -Example1_ref 6308 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:103,114,0,0 0/0:.:217:217:0:0%:103,114,0,0 -Example1_ref 6309 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:213:213:0:0%:100,113,0,0 -Example1_ref 6310 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:213:213:0:0%:100,113,0,0 -Example1_ref 6311 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:101,112,0,0 0/0:.:213:213:0:0%:101,112,0,0 -Example1_ref 6312 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:211:211:0:0%:101,110,0,0 -Example1_ref 6313 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:101,109,0,0 0/0:.:210:210:0:0%:101,109,0,0 -Example1_ref 6314 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:92,111,0,0 0/0:.:203:203:0:0%:92,111,0,0 -Example1_ref 6315 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:100,112,0,0 0/0:.:212:212:0:0%:100,112,0,0 -Example1_ref 6316 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:103,110,0,0 0/0:.:213:213:0:0%:103,110,0,0 -Example1_ref 6317 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:213:213:0:0%:100,113,0,0 -Example1_ref 6318 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:94,109,0,0 0/0:.:203:203:0:0%:94,109,0,0 -Example1_ref 6319 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:100,110,0,0 0/0:.:210:210:0:0%:100,110,0,0 -Example1_ref 6320 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:99,110,0,0 0/0:.:209:209:0:0%:99,110,0,0 -Example1_ref 6321 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:97,113,0,0 0/0:.:210:210:0:0%:97,113,0,0 -Example1_ref 6322 . G C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:209:1:0.48%:97,112,1,0 0/0:.:211:209:1:0.48%:97,112,1,0 -Example1_ref 6323 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:96,114,0,0 0/0:.:210:210:0:0%:96,114,0,0 -Example1_ref 6324 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:100,115,0,0 0/0:.:215:215:0:0%:100,115,0,0 -Example1_ref 6325 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:213:213:0:0%:100,113,0,0 -Example1_ref 6326 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:99,107,0,0 0/0:.:206:206:0:0%:99,107,0,0 -Example1_ref 6327 . C G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:100,107,1,0 0/0:.:208:207:1:0.48%:100,107,1,0 -Example1_ref 6328 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:101,112,0,0 0/0:.:213:213:0:0%:101,112,0,0 -Example1_ref 6329 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:101,114,0,0 0/0:.:215:215:0:0%:101,114,0,0 -Example1_ref 6330 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:97,111,0,0 0/0:.:208:208:0:0%:97,111,0,0 -Example1_ref 6331 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:100,114,0,0 0/0:.:214:214:0:0%:100,114,0,0 -Example1_ref 6332 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:99,112,0,0 0/0:.:211:211:0:0%:99,112,0,0 -Example1_ref 6333 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:213:213:0:0%:100,113,0,0 -Example1_ref 6334 . C A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:102,106,0,1 0/0:.:209:208:1:0.48%:102,106,0,1 -Example1_ref 6335 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:99,111,0,0 0/0:.:210:210:0:0%:99,111,0,0 -Example1_ref 6336 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:102,111,0,0 0/0:.:213:213:0:0%:102,111,0,0 -Example1_ref 6337 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:96,112,0,0 0/0:.:208:208:0:0%:96,112,0,0 -Example1_ref 6338 . A AC . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:216:1:0.46%:100,116,0,1 0/0:.:218:216:1:0.46%:100,116,0,1 -Example1_ref 6339 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:101,119,0,0 0/0:.:220:220:0:0%:101,119,0,0 -Example1_ref 6340 . G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:98,124,0,0 0/0:.:222:222:0:0%:98,124,0,0 -Example1_ref 6341 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:100,125,0,0 0/0:.:225:225:0:0%:100,125,0,0 -Example1_ref 6342 . C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:0:0%:100,120,0,0 0/0:.:221:220:0:0%:100,120,0,0 -Example1_ref 6343 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:99,129,0,0 0/0:.:228:228:0:0%:99,129,0,0 -Example1_ref 6344 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:99,130,0,0 0/0:.:229:229:0:0%:99,130,0,0 -Example1_ref 6345 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:98,130,0,0 0/0:.:228:228:0:0%:98,130,0,0 -Example1_ref 6346 . AC A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:103,131,1,0 0/0:.:235:234:1:0.43%:103,131,1,0 -Example1_ref 6347 . C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:0:0%:105,131,0,0 0/0:.:237:236:0:0%:105,131,0,0 -Example1_ref 6348 . A ATCTGTCTC . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:103,136,1,0 0/0:.:240:239:1:0.42%:103,136,1,0 -Example1_ref 6349 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:102,134,0,0 0/0:.:236:236:0:0%:102,134,0,0 -Example1_ref 6350 . T G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:1:0.43%:103,129,0,1 0/0:.:233:232:1:0.43%:103,129,0,1 -Example1_ref 6351 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:103,132,0,0 0/0:.:235:235:0:0%:103,132,0,0 -Example1_ref 6352 . A G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:102,132,0,1 0/0:.:235:234:1:0.43%:102,132,0,1 -Example1_ref 6353 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:104,131,0,0 0/0:.:235:235:0:0%:104,131,0,0 -Example1_ref 6354 . C A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:103,128,1,0 0/0:.:232:231:1:0.43%:103,128,1,0 -Example1_ref 6355 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:231:231:0:0%:103,128,0,0 -Example1_ref 6356 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:103,130,0,0 0/0:.:233:233:0:0%:103,130,0,0 -Example1_ref 6357 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:103,129,0,0 0/0:.:232:232:0:0%:103,129,0,0 -Example1_ref 6358 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:102,132,0,0 0/0:.:234:234:0:0%:102,132,0,0 -Example1_ref 6359 . C A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=6.8832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:229:2:0.87%:99,130,2,0 0/0:.:231:229:2:0.87%:99,130,2,0 -Example1_ref 6360 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:102,134,0,0 0/0:.:236:236:0:0%:102,134,0,0 -Example1_ref 6361 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:101,133,0,0 0/0:.:234:234:0:0%:101,133,0,0 -Example1_ref 6362 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:101,128,0,0 0/0:.:229:229:0:0%:101,128,0,0 -Example1_ref 6363 . T C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:100,130,0,1 0/0:.:231:230:1:0.43%:100,130,0,1 -Example1_ref 6364 . G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:94,129,0,0 0/0:.:223:223:0:0%:94,129,0,0 -Example1_ref 6365 . C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:95,120,0,0 0/0:.:215:215:0:0%:95,120,0,0 -Example1_ref 6366 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:100,128,0,0 0/0:.:228:228:0:0%:100,128,0,0 -Example1_ref 6367 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:101,123,0,0 0/0:.:224:224:0:0%:101,123,0,0 -Example1_ref 6368 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:101,126,0,0 0/0:.:227:227:0:0%:101,126,0,0 -Example1_ref 6369 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:104,125,0,0 0/0:.:229:229:0:0%:104,125,0,0 -Example1_ref 6370 . G T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:97,126,0,1 0/0:.:224:223:1:0.45%:97,126,0,1 -Example1_ref 6371 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:103,127,0,0 0/0:.:230:230:0:0%:103,127,0,0 -Example1_ref 6372 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:103,118,0,0 0/0:.:221:221:0:0%:103,118,0,0 -Example1_ref 6373 . C A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:102,120,0,1 0/0:.:223:222:1:0.45%:102,120,0,1 -Example1_ref 6374 . C T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:102,117,1,0 0/0:.:220:219:1:0.45%:102,117,1,0 -Example1_ref 6375 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:102,129,0,0 0/0:.:231:231:0:0%:102,129,0,0 -Example1_ref 6376 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:101,130,0,0 0/0:.:231:231:0:0%:101,130,0,0 -Example1_ref 6377 . T TTGC . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:101,121,1,0 0/0:.:223:222:1:0.45%:101,121,1,0 -Example1_ref 6378 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:94,123,0,0 0/0:.:217:217:0:0%:94,123,0,0 -Example1_ref 6379 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:90,127,0,0 0/0:.:217:217:0:0%:90,127,0,0 -Example1_ref 6380 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:96,130,0,0 0/0:.:226:226:0:0%:96,130,0,0 -Example1_ref 6381 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:0:0%:91,121,0,0 0/0:.:213:212:0:0%:91,121,0,0 -Example1_ref 6382 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:90,129,0,0 0/0:.:219:219:0:0%:90,129,0,0 -Example1_ref 6383 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:90,123,0,0 0/0:.:213:213:0:0%:90,123,0,0 -Example1_ref 6384 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:88,127,0,0 0/0:.:215:215:0:0%:88,127,0,0 -Example1_ref 6385 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:87,123,0,0 0/0:.:210:210:0:0%:87,123,0,0 -Example1_ref 6386 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:87,127,0,0 0/0:.:214:214:0:0%:87,127,0,0 -Example1_ref 6387 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:85,125,0,0 0/0:.:210:210:0:0%:85,125,0,0 -Example1_ref 6388 . A C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:86,126,1,0 0/0:.:213:212:1:0.47%:86,126,1,0 -Example1_ref 6389 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:85,122,0,0 0/0:.:207:207:0:0%:85,122,0,0 -Example1_ref 6390 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:85,120,0,0 0/0:.:205:205:0:0%:85,120,0,0 -Example1_ref 6391 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:83,122,0,0 0/0:.:205:205:0:0%:83,122,0,0 -Example1_ref 6392 . A G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:86,118,1,0 0/0:.:205:204:1:0.49%:86,118,1,0 -Example1_ref 6393 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:83,119,0,0 0/0:.:202:202:0:0%:83,119,0,0 -Example1_ref 6394 . C T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:86,111,0,1 0/0:.:198:197:1:0.51%:86,111,0,1 -Example1_ref 6395 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:86,116,0,0 0/0:.:202:202:0:0%:86,116,0,0 -Example1_ref 6396 . C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:85,113,0,0 0/0:.:198:198:0:0%:85,113,0,0 -Example1_ref 6397 . A G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:85,120,1,0 0/0:.:206:205:1:0.49%:85,120,1,0 -Example1_ref 6398 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:84,121,0,0 0/0:.:205:205:0:0%:84,121,0,0 -Example1_ref 6399 . C A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:81,117,0,1 0/0:.:199:198:1:0.5%:81,117,0,1 -Example1_ref 6400 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:81,118,0,0 0/0:.:199:199:0:0%:81,118,0,0 -Example1_ref 6401 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:199:199:0:0%:79,120,0,0 -Example1_ref 6402 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:76,116,0,0 0/0:.:192:192:0:0%:76,116,0,0 -Example1_ref 6403 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:70,115,0,0 0/0:.:185:185:0:0%:70,115,0,0 -Example1_ref 6404 . C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:76,110,0,0 0/0:.:186:186:0:0%:76,110,0,0 -Example1_ref 6405 . C A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:77,115,0,1 0/0:.:193:192:1:0.52%:77,115,0,1 -Example1_ref 6406 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:78,118,0,0 0/0:.:196:196:0:0%:78,118,0,0 -Example1_ref 6407 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:80,121,0,0 0/0:.:201:201:0:0%:80,121,0,0 -Example1_ref 6408 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:199:199:0:0%:79,120,0,0 -Example1_ref 6409 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:79,114,0,0 0/0:.:193:193:0:0%:79,114,0,0 -Example1_ref 6410 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:0:0%:78,121,0,0 0/0:.:200:199:0:0%:78,121,0,0 -Example1_ref 6411 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:199:199:0:0%:79,120,0,0 -Example1_ref 6412 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:78,119,0,0 0/0:.:197:197:0:0%:78,119,0,0 -Example1_ref 6413 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:77,119,0,0 0/0:.:196:196:0:0%:77,119,0,0 -Example1_ref 6414 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:72,114,0,0 0/0:.:186:186:0:0%:72,114,0,0 -Example1_ref 6415 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:77,115,0,0 0/0:.:192:192:0:0%:77,115,0,0 -Example1_ref 6416 . T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:76,119,0,0 0/0:.:195:195:0:0%:76,119,0,0 -Example1_ref 6417 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:77,119,0,0 0/0:.:196:196:0:0%:77,119,0,0 -Example1_ref 6418 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:76,118,0,0 0/0:.:194:194:0:0%:76,118,0,0 -Example1_ref 6419 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:76,115,0,0 0/0:.:191:191:0:0%:76,115,0,0 -Example1_ref 6420 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:75,112,0,0 0/0:.:187:187:0:0%:75,112,0,0 -Example1_ref 6421 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:74,118,0,0 0/0:.:192:192:0:0%:74,118,0,0 -Example1_ref 6422 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:72,117,0,0 0/0:.:189:189:0:0%:72,117,0,0 -Example1_ref 6423 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:78,116,0,0 0/0:.:194:194:0:0%:78,116,0,0 -Example1_ref 6424 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:77,113,0,0 0/0:.:190:190:0:0%:77,113,0,0 -Example1_ref 6425 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:77,111,0,0 0/0:.:188:188:0:0%:77,111,0,0 -Example1_ref 6426 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:78,116,0,0 0/0:.:194:194:0:0%:78,116,0,0 -Example1_ref 6427 . A G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:77,115,0,1 0/0:.:193:192:1:0.52%:77,115,0,1 -Example1_ref 6428 . A G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:192:1:0.52%:77,115,0,1 0/0:.:194:192:1:0.52%:77,115,0,1 -Example1_ref 6429 . A G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:186:1:0.53%:73,113,1,0 0/0:.:188:186:1:0.53%:73,113,1,0 -Example1_ref 6430 . G A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:183:1:0.54%:73,110,0,1 0/0:.:185:183:1:0.54%:73,110,0,1 -Example1_ref 6431 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:71,114,0,0 0/0:.:186:185:0:0%:71,114,0,0 -Example1_ref 6432 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:74,115,0,0 0/0:.:189:189:0:0%:74,115,0,0 -Example1_ref 6433 . T A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:74,115,0,1 0/0:.:190:189:1:0.53%:74,115,0,1 -Example1_ref 6434 . G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:74,116,0,0 0/0:.:190:190:0:0%:74,116,0,0 -Example1_ref 6435 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:70,114,0,0 0/0:.:184:184:0:0%:70,114,0,0 -Example1_ref 6436 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:68,115,0,0 0/0:.:183:183:0:0%:68,115,0,0 -Example1_ref 6437 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:70,114,0,0 0/0:.:184:184:0:0%:70,114,0,0 -Example1_ref 6438 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:68,116,0,0 0/0:.:184:184:0:0%:68,116,0,0 -Example1_ref 6439 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:69,116,0,0 0/0:.:185:185:0:0%:69,116,0,0 -Example1_ref 6440 . G A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:68,117,0,1 0/0:.:186:185:1:0.54%:68,117,0,1 -Example1_ref 6441 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:68,115,0,0 0/0:.:183:183:0:0%:68,115,0,0 -Example1_ref 6442 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:71,115,0,0 0/0:.:186:186:0:0%:71,115,0,0 -Example1_ref 6443 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:69,105,0,0 0/0:.:174:174:0:0%:69,105,0,0 -Example1_ref 6444 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:65,106,0,0 0/0:.:171:171:0:0%:65,106,0,0 -Example1_ref 6445 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:67,109,0,0 0/0:.:176:176:0:0%:67,109,0,0 -Example1_ref 6446 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:65,105,0,0 0/0:.:170:170:0:0%:65,105,0,0 -Example1_ref 6447 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:66,109,0,0 0/0:.:175:175:0:0%:66,109,0,0 -Example1_ref 6448 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:63,108,0,0 0/0:.:171:171:0:0%:63,108,0,0 -Example1_ref 6449 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:66,105,0,0 0/0:.:171:171:0:0%:66,105,0,0 -Example1_ref 6450 . T A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:67,105,0,1 0/0:.:173:172:1:0.58%:67,105,0,1 -Example1_ref 6451 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:0:0%:63,107,0,0 0/0:.:171:170:0:0%:63,107,0,0 -Example1_ref 6452 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:65,106,0,0 0/0:.:171:171:0:0%:65,106,0,0 -Example1_ref 6453 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:66,107,0,0 0/0:.:173:173:0:0%:66,107,0,0 -Example1_ref 6454 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:62,104,0,0 0/0:.:166:166:0:0%:62,104,0,0 -Example1_ref 6455 . A G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:61,106,0,1 0/0:.:168:167:1:0.6%:61,106,0,1 -Example1_ref 6456 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:56,106,0,0 0/0:.:162:162:0:0%:56,106,0,0 -Example1_ref 6457 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:57,103,0,0 0/0:.:160:160:0:0%:57,103,0,0 -Example1_ref 6458 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:54,103,0,0 0/0:.:157:157:0:0%:54,103,0,0 -Example1_ref 6459 . A G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:56,103,0,1 0/0:.:160:159:1:0.62%:56,103,0,1 -Example1_ref 6460 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:52,104,0,0 0/0:.:156:156:0:0%:52,104,0,0 -Example1_ref 6461 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:52,104,0,0 0/0:.:156:156:0:0%:52,104,0,0 -Example1_ref 6462 . T G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:50,104,0,1 0/0:.:155:154:1:0.65%:50,104,0,1 -Example1_ref 6463 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:47,105,0,0 0/0:.:152:152:0:0%:47,105,0,0 -Example1_ref 6464 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:48,102,0,0 0/0:.:150:150:0:0%:48,102,0,0 -Example1_ref 6465 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:48,104,0,0 0/0:.:152:152:0:0%:48,104,0,0 -Example1_ref 6466 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:49,105,0,0 0/0:.:154:154:0:0%:49,105,0,0 -Example1_ref 6467 . T G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:46,101,0,1 0/0:.:148:147:1:0.68%:46,101,0,1 -Example1_ref 6468 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:45,105,0,0 0/0:.:150:150:0:0%:45,105,0,0 -Example1_ref 6469 . G C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:41,100,0,1 0/0:.:142:141:1:0.7%:41,100,0,1 -Example1_ref 6470 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:44,100,0,0 0/0:.:144:144:0:0%:44,100,0,0 -Example1_ref 6471 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:45,101,0,0 0/0:.:146:146:0:0%:45,101,0,0 -Example1_ref 6472 . A C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:45,103,1,0 0/0:.:149:148:1:0.67%:45,103,1,0 -Example1_ref 6473 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:44,102,0,0 0/0:.:146:146:0:0%:44,102,0,0 -Example1_ref 6474 . T C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:42,86,1,0 0/0:.:129:128:1:0.78%:42,86,1,0 -Example1_ref 6475 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:43,84,0,0 0/0:.:127:127:0:0%:43,84,0,0 -Example1_ref 6476 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:43,83,0,0 0/0:.:126:126:0:0%:43,83,0,0 -Example1_ref 6477 . G T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:38,80,1,0 0/0:.:119:118:1:0.84%:38,80,1,0 -Example1_ref 6478 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:40,81,0,0 0/0:.:121:121:0:0%:40,81,0,0 -Example1_ref 6479 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:41,85,0,0 0/0:.:126:126:0:0%:41,85,0,0 -Example1_ref 6480 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:41,83,0,0 0/0:.:124:124:0:0%:41,83,0,0 -Example1_ref 6481 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:40,80,0,0 0/0:.:120:120:0:0%:40,80,0,0 -Example1_ref 6482 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:39,84,0,0 0/0:.:123:123:0:0%:39,84,0,0 -Example1_ref 6483 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:41,85,0,0 0/0:.:126:126:0:0%:41,85,0,0 -Example1_ref 6484 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:39,81,0,0 0/0:.:120:120:0:0%:39,81,0,0 -Example1_ref 6485 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:39,80,0,0 0/0:.:119:119:0:0%:39,80,0,0 -Example1_ref 6486 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:38,79,0,0 0/0:.:117:117:0:0%:38,79,0,0 -Example1_ref 6487 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:38,77,0,0 0/0:.:115:115:0:0%:38,77,0,0 -Example1_ref 6488 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:39,75,0,0 0/0:.:114:114:0:0%:39,75,0,0 -Example1_ref 6489 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:38,74,0,0 0/0:.:112:112:0:0%:38,74,0,0 -Example1_ref 6490 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:37,77,0,0 0/0:.:114:114:0:0%:37,77,0,0 -Example1_ref 6491 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:37,72,0,0 0/0:.:109:109:0:0%:37,72,0,0 -Example1_ref 6492 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:37,72,0,0 0/0:.:109:109:0:0%:37,72,0,0 -Example1_ref 6493 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:37,75,0,0 0/0:.:112:112:0:0%:37,75,0,0 -Example1_ref 6494 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:37,74,0,0 0/0:.:111:111:0:0%:37,74,0,0 -Example1_ref 6495 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:37,75,0,0 0/0:.:112:112:0:0%:37,75,0,0 -Example1_ref 6496 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:36,73,0,0 0/0:.:109:109:0:0%:36,73,0,0 -Example1_ref 6497 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:37,73,0,0 0/0:.:110:110:0:0%:37,73,0,0 -Example1_ref 6498 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:36,70,0,0 0/0:.:106:106:0:0%:36,70,0,0 -Example1_ref 6499 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:36,71,0,0 0/0:.:107:107:0:0%:36,71,0,0 -Example1_ref 6500 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:37,71,0,0 0/0:.:108:108:0:0%:37,71,0,0 -Example1_ref 6501 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:36,71,0,0 0/0:.:107:107:0:0%:36,71,0,0 -Example1_ref 6502 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:34,71,0,0 0/0:.:105:105:0:0%:34,71,0,0 -Example1_ref 6503 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:36,68,0,0 0/0:.:104:104:0:0%:36,68,0,0 -Example1_ref 6504 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:36,69,0,0 0/0:.:105:105:0:0%:36,69,0,0 -Example1_ref 6505 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:36,69,0,0 0/0:.:105:105:0:0%:36,69,0,0 -Example1_ref 6506 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:36,67,0,0 0/0:.:103:103:0:0%:36,67,0,0 -Example1_ref 6507 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:36,64,0,0 0/0:.:100:100:0:0%:36,64,0,0 -Example1_ref 6508 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:36,66,0,0 0/0:.:102:102:0:0%:36,66,0,0 -Example1_ref 6509 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:36,63,0,0 0/0:.:99:99:0:0%:36,63,0,0 -Example1_ref 6510 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:37,63,0,0 0/0:.:100:100:0:0%:37,63,0,0 -Example1_ref 6511 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:32,62,0,0 0/0:.:94:94:0:0%:32,62,0,0 -Example1_ref 6512 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:31,61,0,0 0/0:.:92:92:0:0%:31,61,0,0 -Example1_ref 6513 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:30,64,0,0 0/0:.:94:94:0:0%:30,64,0,0 -Example1_ref 6514 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:28,64,0,0 0/0:.:92:92:0:0%:28,64,0,0 -Example1_ref 6515 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:27,61,0,0 0/0:.:88:88:0:0%:27,61,0,0 -Example1_ref 6516 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:27,61,0,0 0/0:.:88:88:0:0%:27,61,0,0 -Example1_ref 6517 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:28,62,0,0 0/0:.:90:90:0:0%:28,62,0,0 -Example1_ref 6518 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:29,61,0,0 0/0:.:90:90:0:0%:29,61,0,0 -Example1_ref 6519 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:28,63,0,0 0/0:.:91:91:0:0%:28,63,0,0 -Example1_ref 6520 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:30,61,0,0 0/0:.:91:91:0:0%:30,61,0,0 -Example1_ref 6521 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:29,61,0,0 0/0:.:90:90:0:0%:29,61,0,0 -Example1_ref 6522 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:29,62,0,0 0/0:.:91:91:0:0%:29,62,0,0 -Example1_ref 6523 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:30,61,0,0 0/0:.:91:91:0:0%:30,61,0,0 -Example1_ref 6524 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:27,60,0,0 0/0:.:87:87:0:0%:27,60,0,0 -Example1_ref 6525 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:27,58,0,0 0/0:.:85:85:0:0%:27,58,0,0 -Example1_ref 6526 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:27,57,0,0 0/0:.:84:84:0:0%:27,57,0,0 -Example1_ref 6527 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:26,52,0,0 0/0:.:78:78:0:0%:26,52,0,0 -Example1_ref 6528 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:26,49,0,0 0/0:.:75:75:0:0%:26,49,0,0 -Example1_ref 6529 . T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:0:0%:27,44,0,0 0/0:.:72:71:0:0%:27,44,0,0 -Example1_ref 6530 . T . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:27,41,0,0 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 6531 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:69:0:0%:25,44,0,0 0/0:.:70:69:0:0%:25,44,0,0 -Example1_ref 6532 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:25,39,0,0 0/0:.:64:64:0:0%:25,39,0,0 -Example1_ref 6533 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:25,39,0,0 0/0:.:64:64:0:0%:25,39,0,0 -Example1_ref 6534 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:26,38,0,0 0/0:.:64:64:0:0%:26,38,0,0 -Example1_ref 6535 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:25,37,0,0 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 6536 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:24,37,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 6537 . T . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:25,33,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 6538 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:24,32,0,0 0/0:.:56:56:0:0%:24,32,0,0 -Example1_ref 6539 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:25,32,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 6540 . T . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:26,32,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 6541 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:26,31,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 6542 . T . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:27,31,0,0 0/0:.:58:58:0:0%:27,31,0,0 -Example1_ref 6543 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:27,32,0,0 0/0:.:59:59:0:0%:27,32,0,0 -Example1_ref 6544 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:27,32,0,0 0/0:.:59:59:0:0%:27,32,0,0 -Example1_ref 6545 . C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:28,32,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 6546 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:29,28,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 6547 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:30,28,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 6548 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:30,26,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 6549 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:30,26,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 6550 . A ACTGTCTC . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=7.5225E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:55:1:1.79%:29,26,1,0 0/0:.:56:55:1:1.79%:29,26,1,0 -Example1_ref 6551 . T . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:31,24,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 6552 . T . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:29,26,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 6553 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 6554 . C . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:30,23,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 6555 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 6556 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 6557 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:30,26,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 6558 . T . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:30,23,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 6559 . G T . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=7.5248E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:50:1:1.96%:25,25,1,0 0/0:.:51:50:1:1.96%:25,25,1,0 -Example1_ref 6560 . C T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=7.5243E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:51:1:1.92%:28,23,1,0 0/0:.:52:51:1:1.92%:28,23,1,0 -Example1_ref 6561 . A . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:29,25,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 6562 . A . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:28,25,0,0 0/0:.:54:53:0:0%:28,25,0,0 -Example1_ref 6563 . T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:29,23,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 6564 . T . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:29,25,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 6565 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:31,25,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 6566 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:31,25,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 6567 . G . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:32,24,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 6568 . T . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:32,26,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 6569 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:32,25,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 6570 . C . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:32,23,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 6571 . T . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:32,23,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 6572 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:35,25,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 6573 . C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:35,25,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 6574 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:35,23,0,0 0/0:.:58:58:0:0%:35,23,0,0 -Example1_ref 6575 . G . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 6576 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 6577 . A G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=7.52E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:62:1:1.59%:38,24,0,1 0/0:.:63:62:1:1.59%:38,24,0,1 -Example1_ref 6578 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:38,23,0,0 0/0:.:61:61:0:0%:38,23,0,0 -Example1_ref 6579 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:38,25,0,0 0/0:.:63:63:0:0%:38,25,0,0 -Example1_ref 6580 . C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:38,25,0,0 0/0:.:63:63:0:0%:38,25,0,0 -Example1_ref 6581 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 6582 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 6583 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 6584 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 6585 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 6586 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 6587 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 6588 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:39,28,0,0 0/0:.:67:67:0:0%:39,28,0,0 -Example1_ref 6589 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:39,25,0,0 0/0:.:64:64:0:0%:39,25,0,0 -Example1_ref 6590 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 6591 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 6592 . C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 6593 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 6594 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 6595 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:37,27,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 6596 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:36,26,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 6597 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:37,26,0,0 0/0:.:63:63:0:0%:37,26,0,0 -Example1_ref 6598 . G T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=7.5197E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:63:1:1.56%:37,26,1,0 0/0:.:64:63:1:1.56%:37,26,1,0 -Example1_ref 6599 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 6600 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:39,25,0,0 0/0:.:64:64:0:0%:39,25,0,0 -Example1_ref 6601 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:39,26,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 6602 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 6603 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 6604 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 6605 . A . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:42,26,0,0 0/0:.:68:68:0:0%:42,26,0,0 -Example1_ref 6606 . T . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:43,26,0,0 0/0:.:69:69:0:0%:43,26,0,0 -Example1_ref 6607 . G . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:44,25,0,0 0/0:.:69:69:0:0%:44,25,0,0 -Example1_ref 6608 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:43,27,0,0 0/0:.:70:70:0:0%:43,27,0,0 -Example1_ref 6609 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:44,26,0,0 0/0:.:70:70:0:0%:44,26,0,0 -Example1_ref 6610 . A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:44,27,0,0 0/0:.:71:71:0:0%:44,27,0,0 -Example1_ref 6611 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:43,29,0,0 0/0:.:72:72:0:0%:43,29,0,0 -Example1_ref 6612 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:47,29,0,0 0/0:.:76:76:0:0%:47,29,0,0 -Example1_ref 6613 . C A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=7.5168E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:74:1:1.33%:47,27,0,1 0/0:.:75:74:1:1.33%:47,27,0,1 -Example1_ref 6614 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:47,29,0,0 0/0:.:76:76:0:0%:47,29,0,0 -Example1_ref 6615 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:48,29,0,0 0/0:.:77:77:0:0%:48,29,0,0 -Example1_ref 6616 . T C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=7.5166E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:75:1:1.32%:47,28,1,0 0/0:.:76:75:1:1.32%:47,28,1,0 -Example1_ref 6617 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:51,28,0,0 0/0:.:79:79:0:0%:51,28,0,0 -Example1_ref 6618 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:51,31,0,0 0/0:.:82:82:0:0%:51,31,0,0 -Example1_ref 6619 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:52,31,0,0 0/0:.:83:83:0:0%:52,31,0,0 -Example1_ref 6620 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:52,28,0,0 0/0:.:80:80:0:0%:52,28,0,0 -Example1_ref 6621 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:52,25,0,0 0/0:.:77:77:0:0%:52,25,0,0 -Example1_ref 6622 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:52,23,0,0 0/0:.:75:75:0:0%:52,23,0,0 -Example1_ref 6623 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:50,23,0,0 0/0:.:73:73:0:0%:50,23,0,0 -Example1_ref 6624 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:52,23,0,0 0/0:.:75:75:0:0%:52,23,0,0 -Example1_ref 6625 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:52,23,0,0 0/0:.:75:75:0:0%:52,23,0,0 -Example1_ref 6626 . C . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:51,23,0,0 0/0:.:74:74:0:0%:51,23,0,0 -Example1_ref 6627 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:52,24,0,0 0/0:.:76:76:0:0%:52,24,0,0 -Example1_ref 6628 . A G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=7.5166E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:75:1:1.32%:52,23,0,1 0/0:.:76:75:1:1.32%:52,23,0,1 -Example1_ref 6629 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:53,24,0,0 0/0:.:77:77:0:0%:53,24,0,0 -Example1_ref 6630 . C . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:55,24,0,0 0/0:.:79:79:0:0%:55,24,0,0 -Example1_ref 6631 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:55,25,0,0 0/0:.:80:80:0:0%:55,25,0,0 -Example1_ref 6632 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:56,26,0,0 0/0:.:82:82:0:0%:56,26,0,0 -Example1_ref 6633 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:56,26,0,0 0/0:.:82:82:0:0%:56,26,0,0 -Example1_ref 6634 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:57,26,0,0 0/0:.:83:83:0:0%:57,26,0,0 -Example1_ref 6635 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:57,26,0,0 0/0:.:83:83:0:0%:57,26,0,0 -Example1_ref 6636 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:59,29,0,0 0/0:.:88:88:0:0%:59,29,0,0 -Example1_ref 6637 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:59,29,0,0 0/0:.:88:88:0:0%:59,29,0,0 -Example1_ref 6638 . A AG . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=7.5141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:88:1:1.12%:59,29,0,1 0/0:.:89:88:1:1.12%:59,29,0,1 -Example1_ref 6639 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:61,30,0,0 0/0:.:91:91:0:0%:61,30,0,0 -Example1_ref 6640 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:61,30,0,0 0/0:.:91:91:0:0%:61,30,0,0 -Example1_ref 6641 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:66,29,0,0 0/0:.:95:95:0:0%:66,29,0,0 -Example1_ref 6642 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:66,33,0,0 0/0:.:99:99:0:0%:66,33,0,0 -Example1_ref 6643 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:64,34,0,0 0/0:.:98:98:0:0%:64,34,0,0 -Example1_ref 6644 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:66,34,0,0 0/0:.:100:100:0:0%:66,34,0,0 -Example1_ref 6645 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:65,35,0,0 0/0:.:100:100:0:0%:65,35,0,0 -Example1_ref 6646 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:101:101:0:0%:66,35,0,0 -Example1_ref 6647 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:67,35,0,0 0/0:.:102:102:0:0%:67,35,0,0 -Example1_ref 6648 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:65,35,0,0 0/0:.:100:100:0:0%:65,35,0,0 -Example1_ref 6649 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:68,35,0,0 0/0:.:103:103:0:0%:68,35,0,0 -Example1_ref 6650 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:67,33,0,0 0/0:.:100:100:0:0%:67,33,0,0 -Example1_ref 6651 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:66,34,0,0 0/0:.:100:100:0:0%:66,34,0,0 -Example1_ref 6652 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:66,34,0,0 0/0:.:100:100:0:0%:66,34,0,0 -Example1_ref 6653 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:101:101:0:0%:66,35,0,0 -Example1_ref 6654 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:63,35,0,0 0/0:.:98:98:0:0%:63,35,0,0 -Example1_ref 6655 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:101:101:0:0%:66,35,0,0 -Example1_ref 6656 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:65,36,0,0 0/0:.:101:101:0:0%:65,36,0,0 -Example1_ref 6657 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:65,34,0,0 0/0:.:99:99:0:0%:65,34,0,0 -Example1_ref 6658 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:101:101:0:0%:66,35,0,0 -Example1_ref 6659 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:67,33,0,0 0/0:.:100:100:0:0%:67,33,0,0 -Example1_ref 6660 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:67,35,0,0 0/0:.:102:102:0:0%:67,35,0,0 -Example1_ref 6661 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:68,38,0,0 0/0:.:106:106:0:0%:68,38,0,0 -Example1_ref 6662 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:68,38,0,0 0/0:.:106:106:0:0%:68,38,0,0 -Example1_ref 6663 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:67,37,0,0 0/0:.:104:104:0:0%:67,37,0,0 -Example1_ref 6664 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:67,38,0,0 0/0:.:105:105:0:0%:67,38,0,0 -Example1_ref 6665 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:68,36,0,0 0/0:.:104:104:0:0%:68,36,0,0 -Example1_ref 6666 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:67,38,0,0 0/0:.:105:105:0:0%:67,38,0,0 -Example1_ref 6667 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:68,42,0,0 0/0:.:110:110:0:0%:68,42,0,0 -Example1_ref 6668 . T TA . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:64,44,1,0 0/0:.:109:108:1:0.92%:64,44,1,0 -Example1_ref 6669 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:65,45,0,0 0/0:.:110:110:0:0%:65,45,0,0 -Example1_ref 6670 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:65,45,0,0 0/0:.:110:110:0:0%:65,45,0,0 -Example1_ref 6671 . A G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:66,44,0,1 0/0:.:111:110:1:0.9%:66,44,0,1 -Example1_ref 6672 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:66,46,0,0 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 6673 . A G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:63,45,0,1 0/0:.:109:108:1:0.92%:63,45,0,1 -Example1_ref 6674 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:65,47,0,0 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 6675 . CTT C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.5109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:66,48,0,1 0/0:.:115:114:1:0.87%:66,48,0,1 -Example1_ref 6676 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:0:0%:66,47,0,0 0/0:.:114:113:0:0%:66,47,0,0 -Example1_ref 6677 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:0:0%:64,47,0,0 0/0:.:112:111:0:0%:64,47,0,0 -Example1_ref 6678 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 6679 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 6680 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 6681 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:113:113:0:0%:67,46,0,0 -Example1_ref 6682 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:65,49,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 6683 . TA T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.5108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:66,49,1,0 0/0:.:116:115:1:0.86%:66,49,1,0 -Example1_ref 6684 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 6685 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:67,47,0,0 0/0:.:114:114:0:0%:67,47,0,0 -Example1_ref 6686 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:116:116:0:0%:67,49,0,0 -Example1_ref 6687 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:116:116:0:0%:66,50,0,0 -Example1_ref 6688 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:67,52,0,0 0/0:.:119:119:0:0%:67,52,0,0 -Example1_ref 6689 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 6690 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:67,52,0,0 0/0:.:119:119:0:0%:67,52,0,0 -Example1_ref 6691 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:67,51,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 6692 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 6693 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:116:116:0:0%:67,49,0,0 -Example1_ref 6694 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 6695 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:71,50,0,0 0/0:.:121:121:0:0%:71,50,0,0 -Example1_ref 6696 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:71,50,0,0 0/0:.:121:121:0:0%:71,50,0,0 -Example1_ref 6697 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 6698 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:120:120:0:0%:70,50,0,0 -Example1_ref 6699 . A C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.5103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:121:1:0.82%:71,50,0,1 0/0:.:122:121:1:0.82%:71,50,0,1 -Example1_ref 6700 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:122:122:0:0%:71,51,0,0 -Example1_ref 6701 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:72,51,0,0 0/0:.:123:123:0:0%:72,51,0,0 -Example1_ref 6702 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 6703 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:71,49,0,0 0/0:.:120:120:0:0%:71,49,0,0 -Example1_ref 6704 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:68,49,0,0 0/0:.:117:117:0:0%:68,49,0,0 -Example1_ref 6705 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:124:124:0:0%:74,50,0,0 -Example1_ref 6706 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:119:119:0:0%:70,49,0,0 -Example1_ref 6707 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 6708 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:68,51,0,0 0/0:.:119:119:0:0%:68,51,0,0 -Example1_ref 6709 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:72,51,0,0 0/0:.:123:123:0:0%:72,51,0,0 -Example1_ref 6710 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:72,51,0,0 0/0:.:123:123:0:0%:72,51,0,0 -Example1_ref 6711 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:121:121:0:0%:69,52,0,0 -Example1_ref 6712 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:70,52,0,0 0/0:.:122:122:0:0%:70,52,0,0 -Example1_ref 6713 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:71,52,0,0 0/0:.:123:123:0:0%:71,52,0,0 -Example1_ref 6714 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:127:127:0:0%:75,52,0,0 -Example1_ref 6715 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:74,52,0,0 0/0:.:126:126:0:0%:74,52,0,0 -Example1_ref 6716 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:128:128:0:0%:74,54,0,0 -Example1_ref 6717 . G A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=7.5104E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:66,54,1,0 0/0:.:121:120:1:0.83%:66,54,1,0 -Example1_ref 6718 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:71,53,0,0 0/0:.:124:124:0:0%:71,53,0,0 -Example1_ref 6719 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:68,54,0,0 0/0:.:122:122:0:0%:68,54,0,0 -Example1_ref 6720 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:126:126:0:0%:72,54,0,0 -Example1_ref 6721 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:127:127:0:0%:73,54,0,0 -Example1_ref 6722 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:129:129:0:0%:73,56,0,0 -Example1_ref 6723 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:126:126:0:0%:73,53,0,0 -Example1_ref 6724 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:72,55,0,0 0/0:.:127:127:0:0%:72,55,0,0 -Example1_ref 6725 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:133:133:0:0%:74,59,0,0 -Example1_ref 6726 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:130:130:0:0%:73,57,0,0 -Example1_ref 6727 . C A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:68,56,0,1 0/0:.:125:124:1:0.8%:68,56,0,1 -Example1_ref 6728 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:70,57,0,0 0/0:.:127:127:0:0%:70,57,0,0 -Example1_ref 6729 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:128:128:0:0%:72,56,0,0 -Example1_ref 6730 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:131:131:0:0%:73,58,0,0 -Example1_ref 6731 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:131:131:0:0%:73,58,0,0 -Example1_ref 6732 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:128:128:0:0%:72,56,0,0 -Example1_ref 6733 . G A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:127:1:0.78%:71,56,1,0 0/0:.:129:127:1:0.78%:71,56,1,0 -Example1_ref 6734 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:74,56,0,0 0/0:.:130:130:0:0%:74,56,0,0 -Example1_ref 6735 . C A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.5098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:70,57,0,1 0/0:.:128:127:1:0.78%:70,57,0,1 -Example1_ref 6736 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 6737 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:69,56,0,0 0/0:.:125:125:0:0%:69,56,0,0 -Example1_ref 6738 . A T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:68,57,1,0 0/0:.:126:125:1:0.79%:68,57,1,0 -Example1_ref 6739 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:67,57,0,0 0/0:.:124:124:0:0%:67,57,0,0 -Example1_ref 6740 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:67,57,0,0 0/0:.:124:124:0:0%:67,57,0,0 -Example1_ref 6741 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 6742 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:67,58,0,0 0/0:.:125:125:0:0%:67,58,0,0 -Example1_ref 6743 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:68,58,0,0 0/0:.:126:126:0:0%:68,58,0,0 -Example1_ref 6744 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:66,59,0,0 0/0:.:125:125:0:0%:66,59,0,0 -Example1_ref 6745 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:67,56,0,0 0/0:.:123:123:0:0%:67,56,0,0 -Example1_ref 6746 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:68,59,0,0 0/0:.:127:127:0:0%:68,59,0,0 -Example1_ref 6747 . C A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:66,58,0,1 0/0:.:125:124:1:0.8%:66,58,0,1 -Example1_ref 6748 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:68,57,0,0 0/0:.:125:125:0:0%:68,57,0,0 -Example1_ref 6749 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:69,57,0,0 0/0:.:126:126:0:0%:69,57,0,0 -Example1_ref 6750 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:65,58,0,0 0/0:.:123:123:0:0%:65,58,0,0 -Example1_ref 6751 . ATG A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.5103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:121:1:0.82%:65,56,1,0 0/0:.:123:121:1:0.82%:65,56,1,0 -Example1_ref 6752 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 6753 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 6754 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:62,58,0,0 0/0:.:120:120:0:0%:62,58,0,0 -Example1_ref 6755 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:65,58,0,0 0/0:.:123:123:0:0%:65,58,0,0 -Example1_ref 6756 . G A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.5103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:121:1:0.82%:61,60,1,0 0/0:.:122:121:1:0.82%:61,60,1,0 -Example1_ref 6757 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:64,57,0,0 0/0:.:121:121:0:0%:64,57,0,0 -Example1_ref 6758 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 6759 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:64,56,0,0 0/0:.:120:120:0:0%:64,56,0,0 -Example1_ref 6760 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 6761 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:0:0%:61,58,0,0 0/0:.:120:119:0:0%:61,58,0,0 -Example1_ref 6762 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:60,59,0,0 0/0:.:119:119:0:0%:60,59,0,0 -Example1_ref 6763 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:122:122:0:0%:64,58,0,0 -Example1_ref 6764 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 6765 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:61,58,0,0 0/0:.:119:119:0:0%:61,58,0,0 -Example1_ref 6766 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:59,57,0,0 0/0:.:116:116:0:0%:59,57,0,0 -Example1_ref 6767 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 6768 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:62,54,0,0 0/0:.:116:116:0:0%:62,54,0,0 -Example1_ref 6769 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:120:120:0:0%:63,57,0,0 -Example1_ref 6770 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:61,55,0,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 6771 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:117:117:0:0%:61,56,0,0 -Example1_ref 6772 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:62,54,0,0 0/0:.:116:116:0:0%:62,54,0,0 -Example1_ref 6773 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:0:0%:62,58,0,0 0/0:.:121:120:0:0%:62,58,0,0 -Example1_ref 6774 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:60,57,0,0 0/0:.:117:117:0:0%:60,57,0,0 -Example1_ref 6775 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:62,57,0,0 0/0:.:119:119:0:0%:62,57,0,0 -Example1_ref 6776 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 6777 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:118:118:0:0%:59,59,0,0 -Example1_ref 6778 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:118:118:0:0%:59,59,0,0 -Example1_ref 6779 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:58,61,0,0 0/0:.:119:119:0:0%:58,61,0,0 -Example1_ref 6780 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:118:118:0:0%:59,59,0,0 -Example1_ref 6781 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:121:121:0:0%:62,59,0,0 -Example1_ref 6782 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:60,61,0,0 0/0:.:121:121:0:0%:60,61,0,0 -Example1_ref 6783 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:57,61,0,0 0/0:.:118:118:0:0%:57,61,0,0 -Example1_ref 6784 . G T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.5102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:62,60,1,0 0/0:.:123:122:1:0.81%:62,60,1,0 -Example1_ref 6785 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:123:123:0:0%:62,61,0,0 -Example1_ref 6786 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:122:122:0:0%:64,58,0,0 -Example1_ref 6787 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:60,59,0,0 0/0:.:119:119:0:0%:60,59,0,0 -Example1_ref 6788 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:118:118:0:0%:59,59,0,0 -Example1_ref 6789 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:61,58,0,0 0/0:.:119:119:0:0%:61,58,0,0 -Example1_ref 6790 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 6791 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 6792 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:121:121:0:0%:62,59,0,0 -Example1_ref 6793 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:60,60,0,0 0/0:.:120:120:0:0%:60,60,0,0 -Example1_ref 6794 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:62,60,0,0 0/0:.:122:122:0:0%:62,60,0,0 -Example1_ref 6795 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:58,59,0,0 0/0:.:117:117:0:0%:58,59,0,0 -Example1_ref 6796 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:55,60,0,0 0/0:.:115:115:0:0%:55,60,0,0 -Example1_ref 6797 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:115:115:0:0%:57,58,0,0 -Example1_ref 6798 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:111:111:0:0%:53,58,0,0 -Example1_ref 6799 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:111:111:0:0%:54,57,0,0 -Example1_ref 6800 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:56,56,0,0 0/0:.:112:112:0:0%:56,56,0,0 -Example1_ref 6801 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:57,60,0,0 0/0:.:117:117:0:0%:57,60,0,0 -Example1_ref 6802 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:113:113:0:0%:54,59,0,0 -Example1_ref 6803 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 6804 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 6805 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:113:113:0:0%:54,59,0,0 -Example1_ref 6806 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 6807 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:113:113:0:0%:54,59,0,0 -Example1_ref 6808 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:54,56,0,0 0/0:.:110:110:0:0%:54,56,0,0 -Example1_ref 6809 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:53,54,0,0 0/0:.:107:107:0:0%:53,54,0,0 -Example1_ref 6810 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:54,56,0,0 0/0:.:110:110:0:0%:54,56,0,0 -Example1_ref 6811 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:113:113:0:0%:54,59,0,0 -Example1_ref 6812 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:111:111:0:0%:54,57,0,0 -Example1_ref 6813 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 6814 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:54,55,0,0 0/0:.:109:109:0:0%:54,55,0,0 -Example1_ref 6815 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:53,54,0,0 0/0:.:107:107:0:0%:53,54,0,0 -Example1_ref 6816 . C A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:110:1:0.9%:55,55,0,1 0/0:.:112:110:1:0.9%:55,55,0,1 -Example1_ref 6817 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:55,55,0,0 0/0:.:110:110:0:0%:55,55,0,0 -Example1_ref 6818 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:54,53,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 6819 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:105:105:0:0%:51,54,0,0 -Example1_ref 6820 . C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 6821 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:108:108:0:0%:52,56,0,0 -Example1_ref 6822 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:105:105:0:0%:51,54,0,0 -Example1_ref 6823 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:50,52,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 6824 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:49,54,0,0 0/0:.:103:103:0:0%:49,54,0,0 -Example1_ref 6825 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:49,52,0,0 0/0:.:101:101:0:0%:49,52,0,0 -Example1_ref 6826 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:105:105:0:0%:49,56,0,0 -Example1_ref 6827 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 6828 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:49,52,0,0 0/0:.:101:101:0:0%:49,52,0,0 -Example1_ref 6829 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 6830 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:47,56,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 6831 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:43,55,0,0 0/0:.:98:98:0:0%:43,55,0,0 -Example1_ref 6832 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:45,52,0,0 0/0:.:97:97:0:0%:45,52,0,0 -Example1_ref 6833 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:0:0%:41,54,0,0 0/0:.:96:95:0:0%:41,54,0,0 -Example1_ref 6834 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:46,50,0,0 0/0:.:96:96:0:0%:46,50,0,0 -Example1_ref 6835 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:46,56,0,0 0/0:.:102:102:0:0%:46,56,0,0 -Example1_ref 6836 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 6837 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:105:105:0:0%:48,57,0,0 -Example1_ref 6838 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:47,57,0,0 0/0:.:104:104:0:0%:47,57,0,0 -Example1_ref 6839 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:47,57,0,0 0/0:.:104:104:0:0%:47,57,0,0 -Example1_ref 6840 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:47,51,0,0 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 6841 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:47,56,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 6842 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:48,54,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 6843 . G GT . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=7.5123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:1:0.98%:46,55,0,1 0/0:.:102:101:1:0.98%:46,55,0,1 -Example1_ref 6844 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 6845 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:44,54,0,0 0/0:.:98:98:0:0%:44,54,0,0 -Example1_ref 6846 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:45,56,0,0 0/0:.:101:101:0:0%:45,56,0,0 -Example1_ref 6847 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:0:0%:45,57,0,0 0/0:.:103:102:0:0%:45,57,0,0 -Example1_ref 6848 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:0:0%:57,58,0,0 0/0:.:116:115:0:0%:57,58,0,0 -Example1_ref 6849 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:57,60,0,0 0/0:.:117:117:0:0%:57,60,0,0 -Example1_ref 6850 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:118:118:0:0%:59,59,0,0 -Example1_ref 6851 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:58,56,0,0 0/0:.:114:114:0:0%:58,56,0,0 -Example1_ref 6852 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:117:117:0:0%:59,58,0,0 -Example1_ref 6853 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:60,57,0,0 0/0:.:117:117:0:0%:60,57,0,0 -Example1_ref 6854 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:60,57,0,0 0/0:.:117:117:0:0%:60,57,0,0 -Example1_ref 6855 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:0:0%:63,57,0,0 0/0:.:121:120:0:0%:63,57,0,0 -Example1_ref 6856 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:120:120:0:0%:63,57,0,0 -Example1_ref 6857 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:64,47,0,0 0/0:.:111:111:0:0%:64,47,0,0 -Example1_ref 6858 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:64,51,0,0 0/0:.:115:115:0:0%:64,51,0,0 -Example1_ref 6859 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 6860 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:111:111:0:0%:62,49,0,0 -Example1_ref 6861 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 6862 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:63,50,0,0 0/0:.:113:113:0:0%:63,50,0,0 -Example1_ref 6863 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 6864 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:65,46,0,0 0/0:.:111:111:0:0%:65,46,0,0 -Example1_ref 6865 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:66,47,0,0 0/0:.:113:113:0:0%:66,47,0,0 -Example1_ref 6866 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:116:116:0:0%:66,50,0,0 -Example1_ref 6867 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:65,49,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 6868 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:116:116:0:0%:66,50,0,0 -Example1_ref 6869 . C A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:63,47,0,1 0/0:.:111:110:1:0.9%:63,47,0,1 -Example1_ref 6870 . C A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:59,48,1,0 0/0:.:108:107:1:0.93%:59,48,1,0 -Example1_ref 6871 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:62,50,0,0 0/0:.:112:112:0:0%:62,50,0,0 -Example1_ref 6872 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:61,51,0,0 0/0:.:112:112:0:0%:61,51,0,0 -Example1_ref 6873 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:59,46,0,0 0/0:.:105:105:0:0%:59,46,0,0 -Example1_ref 6874 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:59,51,0,0 0/0:.:110:110:0:0%:59,51,0,0 -Example1_ref 6875 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:61,51,0,0 0/0:.:112:112:0:0%:61,51,0,0 -Example1_ref 6876 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:61,52,0,0 0/0:.:113:113:0:0%:61,52,0,0 -Example1_ref 6877 . T C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.5112E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:62,49,0,1 0/0:.:112:111:1:0.89%:62,49,0,1 -Example1_ref 6878 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:110:110:0:0%:61,49,0,0 -Example1_ref 6879 . A AT . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=7.5114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:61,48,0,1 0/0:.:110:109:1:0.91%:61,48,0,1 -Example1_ref 6880 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:108:108:0:0%:61,47,0,0 -Example1_ref 6881 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:60,48,0,0 0/0:.:108:108:0:0%:60,48,0,0 -Example1_ref 6882 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:63,49,0,0 0/0:.:112:112:0:0%:63,49,0,0 -Example1_ref 6883 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 6884 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:58,44,0,0 0/0:.:102:102:0:0%:58,44,0,0 -Example1_ref 6885 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 6886 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:56,51,0,0 0/0:.:107:107:0:0%:56,51,0,0 -Example1_ref 6887 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 6888 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 6889 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 6890 . T A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:56,46,0,1 0/0:.:103:102:1:0.97%:56,46,0,1 -Example1_ref 6891 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 6892 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:57,57,0,0 0/0:.:114:114:0:0%:57,57,0,0 -Example1_ref 6893 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 6894 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:117:117:0:0%:59,58,0,0 -Example1_ref 6895 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:58,60,0,0 0/0:.:118:118:0:0%:58,60,0,0 -Example1_ref 6896 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:121:121:0:0%:62,59,0,0 -Example1_ref 6897 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:123:123:0:0%:62,61,0,0 -Example1_ref 6898 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:63,59,0,0 0/0:.:122:122:0:0%:63,59,0,0 -Example1_ref 6899 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:65,61,0,0 0/0:.:126:126:0:0%:65,61,0,0 -Example1_ref 6900 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:61,60,0,0 0/0:.:121:121:0:0%:61,60,0,0 -Example1_ref 6901 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:67,59,0,0 0/0:.:126:126:0:0%:67,59,0,0 -Example1_ref 6902 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:67,60,0,0 0/0:.:127:127:0:0%:67,60,0,0 -Example1_ref 6903 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:67,61,0,0 0/0:.:128:128:0:0%:67,61,0,0 -Example1_ref 6904 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:66,56,0,0 0/0:.:123:122:0:0%:66,56,0,0 -Example1_ref 6905 . T C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:63,56,1,0 0/0:.:120:119:1:0.83%:63,56,1,0 -Example1_ref 6906 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 6907 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:124:124:0:0%:65,59,0,0 -Example1_ref 6908 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:67,54,0,0 0/0:.:121:121:0:0%:67,54,0,0 -Example1_ref 6909 . T C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.5102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:65,57,1,0 0/0:.:123:122:1:0.81%:65,57,1,0 -Example1_ref 6910 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 6911 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:66,59,0,0 0/0:.:125:125:0:0%:66,59,0,0 -Example1_ref 6912 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:67,55,0,0 0/0:.:122:122:0:0%:67,55,0,0 -Example1_ref 6913 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 6914 . C T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:65,54,0,1 0/0:.:120:119:1:0.83%:65,54,0,1 -Example1_ref 6915 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:65,56,0,0 0/0:.:121:121:0:0%:65,56,0,0 -Example1_ref 6916 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:66,56,0,0 0/0:.:122:122:0:0%:66,56,0,0 -Example1_ref 6917 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:114:114:0:0%:63,51,0,0 -Example1_ref 6918 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 6919 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:120:120:0:0%:63,57,0,0 -Example1_ref 6920 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:64,56,0,0 0/0:.:120:120:0:0%:64,56,0,0 -Example1_ref 6921 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 6922 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 6923 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:62,56,0,0 0/0:.:118:118:0:0%:62,56,0,0 -Example1_ref 6924 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 6925 . G A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:62,56,1,0 0/0:.:119:118:1:0.84%:62,56,1,0 -Example1_ref 6926 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:117:117:0:0%:63,54,0,0 -Example1_ref 6927 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 6928 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 6929 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 6930 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:61,53,0,0 0/0:.:114:114:0:0%:61,53,0,0 -Example1_ref 6931 . G T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:63,54,1,0 0/0:.:118:117:1:0.85%:63,54,1,0 -Example1_ref 6932 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:114:114:0:0%:63,51,0,0 -Example1_ref 6933 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:65,54,0,0 0/0:.:119:119:0:0%:65,54,0,0 -Example1_ref 6934 . C A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=7.511E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:1:0.88%:62,51,0,1 0/0:.:114:113:1:0.88%:62,51,0,1 -Example1_ref 6935 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:62,54,0,0 0/0:.:116:116:0:0%:62,54,0,0 -Example1_ref 6936 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:59,51,0,0 0/0:.:110:110:0:0%:59,51,0,0 -Example1_ref 6937 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:61,55,0,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 6938 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:114:114:0:0%:59,55,0,0 -Example1_ref 6939 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:60,55,0,0 0/0:.:115:115:0:0%:60,55,0,0 -Example1_ref 6940 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:61,54,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 6941 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:115:115:0:0%:63,52,0,0 -Example1_ref 6942 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 6943 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:61,53,0,0 0/0:.:114:114:0:0%:61,53,0,0 -Example1_ref 6944 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 6945 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:58,55,0,0 0/0:.:113:113:0:0%:58,55,0,0 -Example1_ref 6946 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:117:117:0:0%:61,56,0,0 -Example1_ref 6947 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:61,54,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 6948 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:57,56,0,0 0/0:.:113:113:0:0%:57,56,0,0 -Example1_ref 6949 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 6950 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:61,55,0,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 6951 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:114:114:0:0%:59,55,0,0 -Example1_ref 6952 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:57,54,0,0 0/0:.:111:111:0:0%:57,54,0,0 -Example1_ref 6953 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:60,56,0,0 0/0:.:116:116:0:0%:60,56,0,0 -Example1_ref 6954 . C T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.5108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:62,53,0,1 0/0:.:116:115:1:0.86%:62,53,0,1 -Example1_ref 6955 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:62,56,0,0 0/0:.:118:118:0:0%:62,56,0,0 -Example1_ref 6956 . TA T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:63,54,1,0 0/0:.:118:117:1:0.85%:63,54,1,0 -Example1_ref 6957 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 6958 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:62,56,0,0 0/0:.:118:118:0:0%:62,56,0,0 -Example1_ref 6959 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:117:117:0:0%:61,56,0,0 -Example1_ref 6960 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:58,56,0,0 0/0:.:114:114:0:0%:58,56,0,0 -Example1_ref 6961 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:62,52,0,0 0/0:.:114:114:0:0%:62,52,0,0 -Example1_ref 6962 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:59,51,0,0 0/0:.:110:110:0:0%:59,51,0,0 -Example1_ref 6963 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:58,51,0,0 0/0:.:109:109:0:0%:58,51,0,0 -Example1_ref 6964 . G T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:55,52,1,0 0/0:.:108:107:1:0.93%:55,52,1,0 -Example1_ref 6965 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 6966 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:59,50,0,0 0/0:.:109:109:0:0%:59,50,0,0 -Example1_ref 6967 . C G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:58,49,1,0 0/0:.:108:107:1:0.93%:58,49,1,0 -Example1_ref 6968 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 6969 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:107:107:0:0%:59,48,0,0 -Example1_ref 6970 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:62,51,0,0 0/0:.:113:113:0:0%:62,51,0,0 -Example1_ref 6971 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:61,51,0,0 0/0:.:112:112:0:0%:61,51,0,0 -Example1_ref 6972 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:60,51,0,0 0/0:.:111:111:0:0%:60,51,0,0 -Example1_ref 6973 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:62,50,0,0 0/0:.:112:112:0:0%:62,50,0,0 -Example1_ref 6974 . A T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=7.5114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:58,51,1,0 0/0:.:110:109:1:0.91%:58,51,1,0 -Example1_ref 6975 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 6976 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 6977 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:59,47,0,0 0/0:.:106:106:0:0%:59,47,0,0 -Example1_ref 6978 . T C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:59,49,1,0 0/0:.:109:108:1:0.92%:59,49,1,0 -Example1_ref 6979 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:111:111:0:0%:62,49,0,0 -Example1_ref 6980 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:60,48,0,0 0/0:.:108:108:0:0%:60,48,0,0 -Example1_ref 6981 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:109:109:0:0%:61,48,0,0 -Example1_ref 6982 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:110:110:0:0%:62,48,0,0 -Example1_ref 6983 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:107:107:0:0%:59,48,0,0 -Example1_ref 6984 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:109:109:0:0%:61,48,0,0 -Example1_ref 6985 . A ACTGTCTCTT . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:58,49,1,0 0/0:.:108:107:1:0.93%:58,49,1,0 -Example1_ref 6986 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:60,50,0,0 0/0:.:110:110:0:0%:60,50,0,0 -Example1_ref 6987 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 6988 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:111:111:0:0%:62,49,0,0 -Example1_ref 6989 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:109:109:0:0%:61,48,0,0 -Example1_ref 6990 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:110:110:0:0%:62,48,0,0 -Example1_ref 6991 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 6992 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:61,53,0,0 0/0:.:114:114:0:0%:61,53,0,0 -Example1_ref 6993 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:60,53,0,0 0/0:.:113:113:0:0%:60,53,0,0 -Example1_ref 6994 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:57,53,0,0 0/0:.:110:110:0:0%:57,53,0,0 -Example1_ref 6995 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:60,51,0,0 0/0:.:111:111:0:0%:60,51,0,0 -Example1_ref 6996 . G A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:57,51,0,1 0/0:.:109:108:1:0.92%:57,51,0,1 -Example1_ref 6997 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:109:109:0:0%:57,52,0,0 -Example1_ref 6998 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 6999 . AT A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=7.5111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:59,53,0,1 0/0:.:113:112:1:0.88%:59,53,0,1 -Example1_ref 7000 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:59,52,0,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 7001 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:109:109:0:0%:57,52,0,0 -Example1_ref 7002 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:58,53,0,0 0/0:.:111:111:0:0%:58,53,0,0 -Example1_ref 7003 . G A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:55,53,0,1 0/0:.:109:108:1:0.92%:55,53,0,1 -Example1_ref 7004 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:0:0%:58,55,0,0 0/0:.:114:113:0:0%:58,55,0,0 -Example1_ref 7005 . T C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:53,55,1,0 0/0:.:109:108:1:0.92%:53,55,1,0 -Example1_ref 7006 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:112:112:0:0%:57,55,0,0 -Example1_ref 7007 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:58,55,0,0 0/0:.:113:113:0:0%:58,55,0,0 -Example1_ref 7008 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:112:112:0:0%:57,55,0,0 -Example1_ref 7009 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:112:112:0:0%:57,55,0,0 -Example1_ref 7010 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:112:112:0:0%:57,55,0,0 -Example1_ref 7011 . T C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:56,52,1,0 0/0:.:109:108:1:0.92%:56,52,1,0 -Example1_ref 7012 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:59,52,0,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 7013 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:58,52,0,0 0/0:.:110:110:0:0%:58,52,0,0 -Example1_ref 7014 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:57,51,0,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 7015 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 7016 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:110:110:0:0%:61,49,0,0 -Example1_ref 7017 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 7018 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 7019 . T C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=7.5117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:57,49,0,1 0/0:.:107:106:1:0.93%:57,49,0,1 -Example1_ref 7020 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:57,51,0,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 7021 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 7022 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 7023 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:57,51,0,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 7024 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:48,51,0,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 7025 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 7026 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:45,44,0,0 0/0:.:89:89:0:0%:45,44,0,0 -Example1_ref 7027 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 7028 . C T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=7.514E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:1:1.11%:47,42,0,1 0/0:.:90:89:1:1.11%:47,42,0,1 -Example1_ref 7029 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 7030 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:49,43,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 7031 . G T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=7.514E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:89:1:1.11%:46,43,1,0 0/0:.:91:89:1:1.11%:46,43,1,0 -Example1_ref 7032 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:0:0%:46,44,0,0 0/0:.:91:90:0:0%:46,44,0,0 -Example1_ref 7033 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:0:0%:45,44,0,0 0/0:.:90:89:0:0%:45,44,0,0 -Example1_ref 7034 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:0:0%:48,43,0,0 0/0:.:92:91:0:0%:48,43,0,0 -Example1_ref 7035 . G T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=7.5141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:88:1:1.12%:47,41,0,1 0/0:.:90:88:1:1.12%:47,41,0,1 -Example1_ref 7036 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:0:0%:47,42,0,0 0/0:.:90:89:0:0%:47,42,0,0 -Example1_ref 7037 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 7038 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:87:87:0:0%:42,45,0,0 -Example1_ref 7039 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:87:87:0:0%:42,45,0,0 -Example1_ref 7040 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:40,45,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 7041 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 7042 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 7043 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:40,45,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 7044 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:38,43,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 7045 . C . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:35,44,0,0 0/0:.:79:79:0:0%:35,44,0,0 -Example1_ref 7046 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:37,44,0,0 0/0:.:81:81:0:0%:37,44,0,0 -Example1_ref 7047 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:36,44,0,0 0/0:.:80:80:0:0%:36,44,0,0 -Example1_ref 7048 . C . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:36,44,0,0 0/0:.:80:80:0:0%:36,44,0,0 -Example1_ref 7049 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:39,44,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 7050 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 7051 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 7052 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 7053 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 7054 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 7055 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:38,44,0,0 0/0:.:82:82:0:0%:38,44,0,0 -Example1_ref 7056 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:39,44,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 7057 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:37,45,0,0 0/0:.:82:82:0:0%:37,45,0,0 -Example1_ref 7058 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 7059 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:38,43,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 7060 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:40,42,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 7061 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 7062 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:40,43,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 7063 . C . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:40,43,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 7064 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:38,43,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 7065 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 7066 . G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:37,43,0,0 0/0:.:80:80:0:0%:37,43,0,0 -Example1_ref 7067 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:40,41,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 7068 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:40,42,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 7069 . C . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:36,42,0,0 0/0:.:78:78:0:0%:36,42,0,0 -Example1_ref 7070 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:39,42,0,0 0/0:.:81:81:0:0%:39,42,0,0 -Example1_ref 7071 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:41,41,0,0 0/0:.:82:82:0:0%:41,41,0,0 -Example1_ref 7072 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:40,42,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 7073 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:42,42,0,0 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 7074 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:80:0:0%:40,40,0,0 0/0:.:84:80:0:0%:40,40,0,0 -Example1_ref 7075 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:40,37,0,0 0/0:.:77:77:0:0%:40,37,0,0 -Example1_ref 7076 . A T . PASS DP=152;SS=1;SSC=2;GPV=3.7565E-11;SPV=5.7872E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/1:.:76:60:16:21.05%:31,29,8,8 0/1:.:76:60:16:21.05%:31,29,8,8 -Example1_ref 7077 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:39,37,0,0 0/0:.:76:76:0:0%:39,37,0,0 -Example1_ref 7078 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:39,36,0,0 0/0:.:75:75:0:0%:39,36,0,0 -Example1_ref 7079 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:40,36,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 7080 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:42,36,0,0 0/0:.:78:78:0:0%:42,36,0,0 -Example1_ref 7081 . C CTGGA . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=7.5163E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:76:1:1.3%:40,36,1,0 0/0:.:77:76:1:1.3%:40,36,1,0 -Example1_ref 7082 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:64:0:0%:38,26,0,0 0/0:.:65:64:0:0%:38,26,0,0 -Example1_ref 7083 . A C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=6.9054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:61:2:3.17%:35,26,2,0 0/0:.:63:61:2:3.17%:35,26,2,0 -Example1_ref 7084 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:39,26,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 7085 . T C . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=6.9064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:59:2:3.28%:34,25,2,0 0/0:.:61:59:2:3.28%:34,25,2,0 -Example1_ref 7086 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:36,26,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 7087 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:37,24,0,0 0/0:.:61:61:0:0%:37,24,0,0 -Example1_ref 7088 . C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:36,24,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 7089 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:58:0:0%:34,24,0,0 0/0:.:59:58:0:0%:34,24,0,0 -Example1_ref 7090 . T . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 7091 . T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:34,23,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 7092 . G . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 7093 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 7094 . C . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 7095 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 7096 . C . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:34,23,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 7097 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 7098 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 7099 . C . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 7100 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 7101 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 7102 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 7103 . T . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:36,24,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 7104 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:36,25,0,0 0/0:.:61:61:0:0%:36,25,0,0 -Example1_ref 7105 . T A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=7.5207E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:60:1:1.64%:36,24,0,1 0/0:.:61:60:1:1.64%:36,24,0,1 -Example1_ref 7106 . C . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:34,25,0,0 0/0:.:59:59:0:0%:34,25,0,0 -Example1_ref 7107 . G . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 7108 . G . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:33,27,0,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 7109 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:31,27,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 7110 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:36,26,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 7111 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 7112 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 7113 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7114 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7115 . G . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 7116 . G T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=7.5207E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:60:1:1.64%:32,28,1,0 0/0:.:61:60:1:1.64%:32,28,1,0 -Example1_ref 7117 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:31,27,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 7118 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 7119 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 7120 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:35,26,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 7121 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 7122 . C . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 7123 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:34,26,0,0 0/0:.:60:60:0:0%:34,26,0,0 -Example1_ref 7124 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 7125 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 7126 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 7127 . G . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 7128 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 7129 . G . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 7130 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7131 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7132 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7133 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 7134 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 7135 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 7136 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 7137 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7138 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7139 . T . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 7140 . T . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 7141 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 7142 . G . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 7143 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 7144 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 7145 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 7146 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 7147 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 7148 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 7149 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 7150 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 7151 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 7152 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 7153 . C . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 7154 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 7155 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 7156 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:30,33,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 7157 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 7158 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:30,34,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 7159 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 7160 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:33,33,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 7161 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 7162 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:29,33,0,0 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 7163 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 7164 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 7165 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 7166 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 7167 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:33,33,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 7168 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 7169 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 7170 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 7171 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 7172 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:30,34,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 7173 . A . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:33,35,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 7174 . A . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:33,35,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 7175 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 7176 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 7177 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 7178 . C . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:35,35,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 7179 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:35,35,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 7180 . C . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:36,36,0,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 7181 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:34,32,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 7182 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 7183 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:34,32,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 7184 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 7185 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 7186 . G . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:31,30,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 7187 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:32,29,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 7188 . G . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:31,28,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 7189 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 7190 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 7191 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 7192 . A T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=7.5207E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:60:1:1.64%:32,28,0,1 0/0:.:62:60:1:1.64%:32,28,0,1 -Example1_ref 7193 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 7194 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 7195 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 7196 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:32,27,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 7197 . A AT . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=7.5217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:57:1:1.72%:30,27,1,0 0/0:.:58:57:1:1.72%:30,27,1,0 -Example1_ref 7198 . C . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 7199 . C . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 7200 . T . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 7201 . T . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 7202 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 7203 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 7204 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:33,27,0,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 7205 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 7206 . T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:34,25,0,0 0/0:.:59:59:0:0%:34,25,0,0 -Example1_ref 7207 . C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:34,26,0,0 0/0:.:60:60:0:0%:34,26,0,0 -Example1_ref 7208 . C . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:32,26,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 7209 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:62:62:0:0%:34,28,0,0 -Example1_ref 7210 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 7211 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7212 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7213 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 7214 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7215 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 7216 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 7217 . T . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:38,30,0,0 0/0:.:68:68:0:0%:38,30,0,0 -Example1_ref 7218 . C . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:39,30,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 7219 . T . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:38,30,0,0 0/0:.:68:68:0:0%:38,30,0,0 -Example1_ref 7220 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 7221 . G . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 7222 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 7223 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 7224 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 7225 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 7226 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 7227 . C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:34,26,0,0 0/0:.:60:60:0:0%:34,26,0,0 -Example1_ref 7228 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7229 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:37,27,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 7230 . G A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=7.518E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:69:1:1.43%:41,28,0,1 0/0:.:70:69:1:1.43%:41,28,0,1 -Example1_ref 7231 . T . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:40,29,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 7232 . C . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 7233 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:38,26,0,0 0/0:.:64:64:0:0%:38,26,0,0 -Example1_ref 7234 . G . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:40,28,0,0 0/0:.:68:68:0:0%:40,28,0,0 -Example1_ref 7235 . G A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=7.5194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:64:1:1.54%:35,29,1,0 0/0:.:65:64:1:1.54%:35,29,1,0 -Example1_ref 7236 . T . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:40,28,0,0 0/0:.:68:68:0:0%:40,28,0,0 -Example1_ref 7237 . C . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:43,27,0,0 0/0:.:70:70:0:0%:43,27,0,0 -Example1_ref 7238 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:40,31,0,0 0/0:.:71:71:0:0%:40,31,0,0 -Example1_ref 7239 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:43,31,0,0 0/0:.:74:74:0:0%:43,31,0,0 -Example1_ref 7240 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:43,33,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 7241 . C . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 7242 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:41,35,0,0 0/0:.:76:76:0:0%:41,35,0,0 -Example1_ref 7243 . T A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=7.517E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:1:1.35%:43,30,0,1 0/0:.:74:73:1:1.35%:43,30,0,1 -Example1_ref 7244 . C . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:74:74:0:0%:41,33,0,0 -Example1_ref 7245 . T TCCCAAAG . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=7.517E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:1:1.35%:41,32,0,1 0/0:.:74:73:1:1.35%:41,32,0,1 -Example1_ref 7246 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:42,33,0,0 0/0:.:75:75:0:0%:42,33,0,0 -Example1_ref 7247 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 7248 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 7249 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 7250 . T A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=7.5175E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:1:1.39%:40,31,0,1 0/0:.:72:71:1:1.39%:40,31,0,1 -Example1_ref 7251 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 7252 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 7253 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:74:74:0:0%:41,33,0,0 -Example1_ref 7254 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:39,34,0,0 0/0:.:73:73:0:0%:39,34,0,0 -Example1_ref 7255 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:74:74:0:0%:41,33,0,0 -Example1_ref 7256 . C . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:38,33,0,0 0/0:.:71:71:0:0%:38,33,0,0 -Example1_ref 7257 . T A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=7.517E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:1:1.35%:41,32,0,1 0/0:.:74:73:1:1.35%:41,32,0,1 -Example1_ref 7258 . C . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:38,34,0,0 0/0:.:72:72:0:0%:38,34,0,0 -Example1_ref 7259 . C . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:40,33,0,0 0/0:.:73:73:0:0%:40,33,0,0 -Example1_ref 7260 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:41,34,0,0 0/0:.:75:75:0:0%:41,34,0,0 -Example1_ref 7261 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:38,34,0,0 0/0:.:72:72:0:0%:38,34,0,0 -Example1_ref 7262 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:39,34,0,0 0/0:.:73:73:0:0%:39,34,0,0 -Example1_ref 7263 . A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:37,34,0,0 0/0:.:71:71:0:0%:37,34,0,0 -Example1_ref 7264 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:35,35,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 7265 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:39,35,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 7266 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:39,35,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 7267 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:37,35,0,0 0/0:.:72:72:0:0%:37,35,0,0 -Example1_ref 7268 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 7269 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 7270 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:72:0:0%:40,32,0,0 0/0:.:73:72:0:0%:40,32,0,0 -Example1_ref 7271 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:74:0:0%:40,34,0,0 0/0:.:75:74:0:0%:40,34,0,0 -Example1_ref 7272 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:0:0%:39,34,0,0 0/0:.:74:73:0:0%:39,34,0,0 -Example1_ref 7273 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:74:0:0%:39,35,0,0 0/0:.:75:74:0:0%:39,35,0,0 -Example1_ref 7274 . T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:0:0%:39,32,0,0 0/0:.:72:71:0:0%:39,32,0,0 -Example1_ref 7275 . G . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:72:0:0%:38,34,0,0 0/0:.:73:72:0:0%:38,34,0,0 -Example1_ref 7276 . C . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:72:0:0%:39,33,0,0 0/0:.:73:72:0:0%:39,33,0,0 -Example1_ref 7277 . C . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:0:0%:39,34,0,0 0/0:.:74:73:0:0%:39,34,0,0 -Example1_ref 7278 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:0:0%:38,35,0,0 0/0:.:74:73:0:0%:38,35,0,0 -Example1_ref 7279 . G T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=7.5177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:70:1:1.41%:37,33,1,0 0/0:.:72:70:1:1.41%:37,33,1,0 -Example1_ref 7280 . G T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=7.5166E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:75:1:1.32%:41,34,1,0 0/0:.:77:75:1:1.32%:41,34,1,0 -Example1_ref 7281 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:37,37,0,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 7282 . C A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=7.5157E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:79:1:1.25%:42,37,0,1 0/0:.:80:79:1:1.25%:42,37,0,1 -Example1_ref 7283 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:40,36,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 7284 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:40,38,0,0 0/0:.:78:78:0:0%:40,38,0,0 -Example1_ref 7285 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:84:84:0:0%:45,39,0,0 -Example1_ref 7286 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 7287 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:46,40,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 7288 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:48,42,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 7289 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 7290 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:50,42,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 7291 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 7292 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 7293 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 7294 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:50,42,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 7295 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:49,40,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 7296 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:49,40,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 7297 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:50,42,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 7298 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 7299 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:50,40,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 7300 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:52,41,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 7301 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 7302 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:51,43,0,0 0/0:.:94:94:0:0%:51,43,0,0 -Example1_ref 7303 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:52,44,0,0 0/0:.:96:96:0:0%:52,44,0,0 -Example1_ref 7304 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:53,43,0,0 0/0:.:96:96:0:0%:53,43,0,0 -Example1_ref 7305 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:53,44,0,0 0/0:.:97:97:0:0%:53,44,0,0 -Example1_ref 7306 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:51,45,0,0 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 7307 . CT C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=7.513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:52,44,1,0 0/0:.:97:96:1:1.03%:52,44,1,0 -Example1_ref 7308 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:0:0%:51,45,0,0 0/0:.:97:96:0:0%:51,45,0,0 -Example1_ref 7309 . G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 7310 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:54,46,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 7311 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:53,46,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 7312 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 7313 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 7314 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 7315 . G T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=7.513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:51,45,1,0 0/0:.:97:96:1:1.03%:51,45,1,0 -Example1_ref 7316 . G . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:50,44,0,0 0/0:.:94:94:0:0%:50,44,0,0 -Example1_ref 7317 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 7318 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:54,43,0,0 0/0:.:97:97:0:0%:54,43,0,0 -Example1_ref 7319 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 7320 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:62,44,0,0 0/0:.:106:106:0:0%:62,44,0,0 -Example1_ref 7321 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:61,42,0,0 0/0:.:103:103:0:0%:61,42,0,0 -Example1_ref 7322 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:108:108:0:0%:64,44,0,0 -Example1_ref 7323 . C A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.5121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:64,39,0,1 0/0:.:104:103:1:0.96%:64,39,0,1 -Example1_ref 7324 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:108:108:0:0%:64,44,0,0 -Example1_ref 7325 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:108:108:0:0%:64,44,0,0 -Example1_ref 7326 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:108:108:0:0%:65,43,0,0 -Example1_ref 7327 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:69,44,0,0 0/0:.:113:113:0:0%:69,44,0,0 -Example1_ref 7328 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:69,43,0,0 0/0:.:112:112:0:0%:69,43,0,0 -Example1_ref 7329 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:69,42,0,0 0/0:.:111:111:0:0%:69,42,0,0 -Example1_ref 7330 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:67,37,0,0 0/0:.:104:104:0:0%:67,37,0,0 -Example1_ref 7331 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:67,41,0,0 0/0:.:108:108:0:0%:67,41,0,0 -Example1_ref 7332 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:68,42,0,0 0/0:.:110:110:0:0%:68,42,0,0 -Example1_ref 7333 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:70,40,0,0 0/0:.:110:110:0:0%:70,40,0,0 -Example1_ref 7334 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:70,38,0,0 0/0:.:108:108:0:0%:70,38,0,0 -Example1_ref 7335 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:111:111:0:0%:70,41,0,0 -Example1_ref 7336 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:69,41,0,0 0/0:.:110:110:0:0%:69,41,0,0 -Example1_ref 7337 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:67,40,0,0 0/0:.:107:107:0:0%:67,40,0,0 -Example1_ref 7338 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:111:111:0:0%:70,41,0,0 -Example1_ref 7339 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:73,40,0,0 0/0:.:113:113:0:0%:73,40,0,0 -Example1_ref 7340 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:74,42,0,0 0/0:.:116:116:0:0%:74,42,0,0 -Example1_ref 7341 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:74,41,0,0 0/0:.:115:115:0:0%:74,41,0,0 -Example1_ref 7342 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:117:117:0:0%:74,43,0,0 -Example1_ref 7343 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:117:117:0:0%:74,43,0,0 -Example1_ref 7344 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:74,44,0,0 0/0:.:118:118:0:0%:74,44,0,0 -Example1_ref 7345 . A AGAGAC . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:74,43,0,1 0/0:.:118:117:1:0.85%:74,43,0,1 -Example1_ref 7346 . A G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:118:1:0.84%:75,43,0,1 0/0:.:120:118:1:0.84%:75,43,0,1 -Example1_ref 7347 . T A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5107E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:116:1:0.85%:75,41,0,1 0/0:.:118:116:1:0.85%:75,41,0,1 -Example1_ref 7348 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:117:117:0:0%:74,43,0,0 -Example1_ref 7349 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:76,44,0,0 0/0:.:120:120:0:0%:76,44,0,0 -Example1_ref 7350 . T C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:76,43,0,1 0/0:.:120:119:1:0.83%:76,43,0,1 -Example1_ref 7351 . C A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.5109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:76,38,0,1 0/0:.:115:114:1:0.87%:76,38,0,1 -Example1_ref 7352 . T G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:75,43,0,1 0/0:.:119:118:1:0.84%:75,43,0,1 -Example1_ref 7353 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:0:0%:80,43,0,0 0/0:.:124:123:0:0%:80,43,0,0 -Example1_ref 7354 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:78,46,0,0 0/0:.:124:124:0:0%:78,46,0,0 -Example1_ref 7355 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:79,46,0,0 0/0:.:125:125:0:0%:79,46,0,0 -Example1_ref 7356 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:77,45,0,0 0/0:.:122:122:0:0%:77,45,0,0 -Example1_ref 7357 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:125:125:0:0%:80,45,0,0 -Example1_ref 7358 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:125:125:0:0%:80,45,0,0 -Example1_ref 7359 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:83,45,0,0 0/0:.:128:128:0:0%:83,45,0,0 -Example1_ref 7360 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:83,47,0,0 0/0:.:130:130:0:0%:83,47,0,0 -Example1_ref 7361 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:130:130:0:0%:84,46,0,0 -Example1_ref 7362 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:84,45,0,0 0/0:.:129:129:0:0%:84,45,0,0 -Example1_ref 7363 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:85,47,0,0 0/0:.:132:132:0:0%:85,47,0,0 -Example1_ref 7364 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:84,48,0,0 0/0:.:132:132:0:0%:84,48,0,0 -Example1_ref 7365 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:130:130:0:0%:84,46,0,0 -Example1_ref 7366 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:85,45,0,0 0/0:.:131:130:0:0%:85,45,0,0 -Example1_ref 7367 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:127:127:0:0%:83,44,0,0 -Example1_ref 7368 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:80,44,0,0 0/0:.:124:124:0:0%:80,44,0,0 -Example1_ref 7369 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:120:120:0:0%:78,42,0,0 -Example1_ref 7370 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:79,43,0,0 0/0:.:122:122:0:0%:79,43,0,0 -Example1_ref 7371 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:81,44,0,0 0/0:.:125:125:0:0%:81,44,0,0 -Example1_ref 7372 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:77,45,0,0 0/0:.:122:122:0:0%:77,45,0,0 -Example1_ref 7373 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:79,45,0,0 0/0:.:124:124:0:0%:79,45,0,0 -Example1_ref 7374 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:80,43,0,0 0/0:.:123:123:0:0%:80,43,0,0 -Example1_ref 7375 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:125:125:0:0%:80,45,0,0 -Example1_ref 7376 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:82,46,0,0 0/0:.:128:128:0:0%:82,46,0,0 -Example1_ref 7377 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:83,45,0,0 0/0:.:128:128:0:0%:83,45,0,0 -Example1_ref 7378 . A ACTGTCTC . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.5098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:81,46,1,0 0/0:.:128:127:1:0.78%:81,46,1,0 -Example1_ref 7379 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:0:0%:81,46,0,0 0/0:.:128:127:0:0%:81,46,0,0 -Example1_ref 7380 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:130:130:0:0%:84,46,0,0 -Example1_ref 7381 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:82,46,0,0 0/0:.:128:128:0:0%:82,46,0,0 -Example1_ref 7382 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:84,45,0,0 0/0:.:129:129:0:0%:84,45,0,0 -Example1_ref 7383 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:84,40,0,0 0/0:.:124:124:0:0%:84,40,0,0 -Example1_ref 7384 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:130:130:0:0%:84,46,0,0 -Example1_ref 7385 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:83,45,0,0 0/0:.:128:128:0:0%:83,45,0,0 -Example1_ref 7386 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:83,42,0,0 0/0:.:125:125:0:0%:83,42,0,0 -Example1_ref 7387 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:83,43,0,0 0/0:.:126:126:0:0%:83,43,0,0 -Example1_ref 7388 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:125:125:0:0%:80,45,0,0 -Example1_ref 7389 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:84,45,0,0 0/0:.:129:129:0:0%:84,45,0,0 -Example1_ref 7390 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:84,42,0,0 0/0:.:126:126:0:0%:84,42,0,0 -Example1_ref 7391 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:125:125:0:0%:80,45,0,0 -Example1_ref 7392 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:126:126:0:0%:82,44,0,0 -Example1_ref 7393 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:130:130:0:0%:84,46,0,0 -Example1_ref 7394 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:130:130:0:0%:84,46,0,0 -Example1_ref 7395 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:127:127:0:0%:83,44,0,0 -Example1_ref 7396 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:87,46,0,0 0/0:.:133:133:0:0%:87,46,0,0 -Example1_ref 7397 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:85,46,0,0 0/0:.:131:131:0:0%:85,46,0,0 -Example1_ref 7398 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:88,47,0,0 0/0:.:135:135:0:0%:88,47,0,0 -Example1_ref 7399 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:84,50,0,0 0/0:.:134:134:0:0%:84,50,0,0 -Example1_ref 7400 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:85,50,0,0 0/0:.:135:135:0:0%:85,50,0,0 -Example1_ref 7401 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:87,49,0,0 0/0:.:136:136:0:0%:87,49,0,0 -Example1_ref 7402 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:89,47,0,0 0/0:.:136:136:0:0%:89,47,0,0 -Example1_ref 7403 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:90,48,0,0 0/0:.:138:138:0:0%:90,48,0,0 -Example1_ref 7404 . G T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:86,46,0,1 0/0:.:133:132:1:0.75%:86,46,0,1 -Example1_ref 7405 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:88,48,0,0 0/0:.:136:136:0:0%:88,48,0,0 -Example1_ref 7406 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:88,48,0,0 0/0:.:136:136:0:0%:88,48,0,0 -Example1_ref 7407 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:140:140:0:0%:90,50,0,0 -Example1_ref 7408 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:88,45,0,0 0/0:.:133:133:0:0%:88,45,0,0 -Example1_ref 7409 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:89,49,0,0 0/0:.:138:138:0:0%:89,49,0,0 -Example1_ref 7410 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:89,50,0,0 0/0:.:139:139:0:0%:89,50,0,0 -Example1_ref 7411 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:90,51,0,0 0/0:.:141:141:0:0%:90,51,0,0 -Example1_ref 7412 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:89,51,0,0 0/0:.:140:140:0:0%:89,51,0,0 -Example1_ref 7413 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:89,52,0,0 0/0:.:141:141:0:0%:89,52,0,0 -Example1_ref 7414 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:89,51,0,0 0/0:.:140:140:0:0%:89,51,0,0 -Example1_ref 7415 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:92,52,0,0 0/0:.:144:144:0:0%:92,52,0,0 -Example1_ref 7416 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:143:143:0:0%:92,51,0,0 -Example1_ref 7417 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:95,53,0,0 0/0:.:148:148:0:0%:95,53,0,0 -Example1_ref 7418 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:94,51,0,0 0/0:.:145:145:0:0%:94,51,0,0 -Example1_ref 7419 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:97,49,0,0 0/0:.:146:146:0:0%:97,49,0,0 -Example1_ref 7420 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:98,47,0,0 0/0:.:145:145:0:0%:98,47,0,0 -Example1_ref 7421 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:95,47,0,0 0/0:.:142:142:0:0%:95,47,0,0 -Example1_ref 7422 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:99,50,0,0 0/0:.:149:149:0:0%:99,50,0,0 -Example1_ref 7423 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:98,51,0,0 0/0:.:149:149:0:0%:98,51,0,0 -Example1_ref 7424 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:100,49,0,0 0/0:.:149:149:0:0%:100,49,0,0 -Example1_ref 7425 . GAT G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:100,47,1,0 0/0:.:148:147:1:0.68%:100,47,1,0 -Example1_ref 7426 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:91,51,0,0 0/0:.:142:142:0:0%:91,51,0,0 -Example1_ref 7427 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:94,51,0,0 0/0:.:145:145:0:0%:94,51,0,0 -Example1_ref 7428 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:96,50,0,0 0/0:.:146:146:0:0%:96,50,0,0 -Example1_ref 7429 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:146:146:0:0%:94,52,0,0 -Example1_ref 7430 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:0:0%:93,50,0,0 0/0:.:144:143:0:0%:93,50,0,0 -Example1_ref 7431 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:95,51,0,0 0/0:.:146:146:0:0%:95,51,0,0 -Example1_ref 7432 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:96,50,0,0 0/0:.:146:146:0:0%:96,50,0,0 -Example1_ref 7433 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:147:147:0:0%:95,52,0,0 -Example1_ref 7434 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:93,53,0,0 0/0:.:146:146:0:0%:93,53,0,0 -Example1_ref 7435 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:96,52,0,0 0/0:.:148:148:0:0%:96,52,0,0 -Example1_ref 7436 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:146:146:0:0%:94,52,0,0 -Example1_ref 7437 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:93,55,0,0 0/0:.:148:148:0:0%:93,55,0,0 -Example1_ref 7438 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:97,55,0,0 0/0:.:152:152:0:0%:97,55,0,0 -Example1_ref 7439 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:99,57,0,0 0/0:.:156:156:0:0%:99,57,0,0 -Example1_ref 7440 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:100,56,0,0 0/0:.:156:156:0:0%:100,56,0,0 -Example1_ref 7441 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:159:159:0:0%:103,56,0,0 -Example1_ref 7442 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:104,57,0,0 0/0:.:161:161:0:0%:104,57,0,0 -Example1_ref 7443 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:101,57,0,0 0/0:.:158:158:0:0%:101,57,0,0 -Example1_ref 7444 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:160:160:0:0%:103,57,0,0 -Example1_ref 7445 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:160:160:0:0%:103,57,0,0 -Example1_ref 7446 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:104,58,0,0 0/0:.:162:162:0:0%:104,58,0,0 -Example1_ref 7447 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:104,57,0,0 0/0:.:161:161:0:0%:104,57,0,0 -Example1_ref 7448 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:101,58,0,0 0/0:.:159:159:0:0%:101,58,0,0 -Example1_ref 7449 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:102,59,0,0 0/0:.:161:161:0:0%:102,59,0,0 -Example1_ref 7450 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:99,58,0,0 0/0:.:157:157:0:0%:99,58,0,0 -Example1_ref 7451 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:101,58,0,0 0/0:.:159:159:0:0%:101,58,0,0 -Example1_ref 7452 . C A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:103,55,0,1 0/0:.:159:158:1:0.63%:103,55,0,1 -Example1_ref 7453 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:104,58,0,0 0/0:.:162:162:0:0%:104,58,0,0 -Example1_ref 7454 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:160:160:0:0%:103,57,0,0 -Example1_ref 7455 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:101,57,0,0 0/0:.:158:158:0:0%:101,57,0,0 -Example1_ref 7456 . G A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:152:1:0.65%:96,56,0,1 0/0:.:154:152:1:0.65%:96,56,0,1 -Example1_ref 7457 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:101,57,0,0 0/0:.:158:158:0:0%:101,57,0,0 -Example1_ref 7458 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:100,57,0,0 0/0:.:157:157:0:0%:100,57,0,0 -Example1_ref 7459 . C A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:99,56,0,1 0/0:.:156:155:1:0.64%:99,56,0,1 -Example1_ref 7460 . C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:97,56,0,0 0/0:.:153:153:0:0%:97,56,0,0 -Example1_ref 7461 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:101,54,0,0 0/0:.:155:155:0:0%:101,54,0,0 -Example1_ref 7462 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:96,55,0,0 0/0:.:151:151:0:0%:96,55,0,0 -Example1_ref 7463 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:100,56,0,0 0/0:.:156:156:0:0%:100,56,0,0 -Example1_ref 7464 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:102,58,0,0 0/0:.:160:160:0:0%:102,58,0,0 -Example1_ref 7465 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:159:159:0:0%:103,56,0,0 -Example1_ref 7466 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:103,58,0,0 0/0:.:161:161:0:0%:103,58,0,0 -Example1_ref 7467 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:102,58,0,0 0/0:.:160:160:0:0%:102,58,0,0 -Example1_ref 7468 . A C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:100,58,1,0 0/0:.:159:158:1:0.63%:100,58,1,0 -Example1_ref 7469 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:160:160:0:0%:103,57,0,0 -Example1_ref 7470 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:102,57,0,0 0/0:.:159:159:0:0%:102,57,0,0 -Example1_ref 7471 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:103,54,0,0 0/0:.:157:157:0:0%:103,54,0,0 -Example1_ref 7472 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:100,54,0,0 0/0:.:154:154:0:0%:100,54,0,0 -Example1_ref 7473 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:102,52,0,0 0/0:.:154:154:0:0%:102,52,0,0 -Example1_ref 7474 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:100,54,0,0 0/0:.:154:154:0:0%:100,54,0,0 -Example1_ref 7475 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:147:147:0:0%:95,52,0,0 -Example1_ref 7476 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:92,53,0,0 0/0:.:145:145:0:0%:92,53,0,0 -Example1_ref 7477 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:90,54,0,0 0/0:.:144:144:0:0%:90,54,0,0 -Example1_ref 7478 . TC T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:138:1:0.72%:87,51,1,0 0/0:.:140:138:1:0.72%:87,51,1,0 -Example1_ref 7479 . C A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:139:1:0.71%:89,50,1,0 0/0:.:141:139:1:0.71%:89,50,1,0 -Example1_ref 7480 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:92,50,0,0 0/0:.:142:142:0:0%:92,50,0,0 -Example1_ref 7481 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:145:145:0:0%:93,52,0,0 -Example1_ref 7482 . T A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:96,51,0,1 0/0:.:148:147:1:0.68%:96,51,0,1 -Example1_ref 7483 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:147:147:0:0%:95,52,0,0 -Example1_ref 7484 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:96,52,0,0 0/0:.:148:148:0:0%:96,52,0,0 -Example1_ref 7485 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:95,51,0,0 0/0:.:146:146:0:0%:95,51,0,0 -Example1_ref 7486 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:147:147:0:0%:95,52,0,0 -Example1_ref 7487 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:95,48,0,0 0/0:.:143:143:0:0%:95,48,0,0 -Example1_ref 7488 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:97,49,0,0 0/0:.:146:146:0:0%:97,49,0,0 -Example1_ref 7489 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:96,51,0,0 0/0:.:147:147:0:0%:96,51,0,0 -Example1_ref 7490 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:91,52,0,0 0/0:.:143:143:0:0%:91,52,0,0 -Example1_ref 7491 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:91,51,0,0 0/0:.:142:142:0:0%:91,51,0,0 -Example1_ref 7492 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:89,53,0,0 0/0:.:142:142:0:0%:89,53,0,0 -Example1_ref 7493 . A T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=6.5786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:145:3:2.03%:92,53,2,1 0/0:.:148:145:3:2.03%:92,53,2,1 -Example1_ref 7494 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:92,53,0,0 0/0:.:145:145:0:0%:92,53,0,0 -Example1_ref 7495 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:93,53,0,0 0/0:.:146:146:0:0%:93,53,0,0 -Example1_ref 7496 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:90,51,0,0 0/0:.:141:141:0:0%:90,51,0,0 -Example1_ref 7497 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:143:143:0:0%:92,51,0,0 -Example1_ref 7498 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:140:140:0:0%:90,50,0,0 -Example1_ref 7499 . A T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=6.5801E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:132:3:2.22%:83,49,2,1 0/0:.:135:132:3:2.22%:83,49,2,1 -Example1_ref 7500 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:86,51,0,0 0/0:.:137:137:0:0%:86,51,0,0 -Example1_ref 7501 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:83,49,0,0 0/0:.:132:132:0:0%:83,49,0,0 -Example1_ref 7502 . A ACCTGT . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:83,50,1,0 0/0:.:134:133:1:0.75%:83,50,1,0 -Example1_ref 7503 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:84,50,0,0 0/0:.:134:134:0:0%:84,50,0,0 -Example1_ref 7504 . A G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:82,51,1,0 0/0:.:134:133:1:0.75%:82,51,1,0 -Example1_ref 7505 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:83,52,0,0 0/0:.:135:135:0:0%:83,52,0,0 -Example1_ref 7506 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:85,51,0,0 0/0:.:136:136:0:0%:85,51,0,0 -Example1_ref 7507 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:84,50,0,0 0/0:.:134:134:0:0%:84,50,0,0 -Example1_ref 7508 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:80,50,0,0 0/0:.:130:130:0:0%:80,50,0,0 -Example1_ref 7509 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:134:134:0:0%:81,53,0,0 -Example1_ref 7510 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 7511 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:129:129:0:0%:76,53,0,0 -Example1_ref 7512 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:76,54,0,0 0/0:.:130:130:0:0%:76,54,0,0 -Example1_ref 7513 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 7514 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:132:132:0:0%:78,54,0,0 -Example1_ref 7515 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:133:133:0:0%:78,55,0,0 -Example1_ref 7516 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 7517 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:126:126:0:0%:72,54,0,0 -Example1_ref 7518 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:0:0%:75,54,0,0 0/0:.:130:129:0:0%:75,54,0,0 -Example1_ref 7519 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:129:129:0:0%:75,54,0,0 -Example1_ref 7520 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:128:128:0:0%:75,53,0,0 -Example1_ref 7521 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 7522 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:79,54,0,0 0/0:.:133:133:0:0%:79,54,0,0 -Example1_ref 7523 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 7524 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:77,55,0,0 0/0:.:132:132:0:0%:77,55,0,0 -Example1_ref 7525 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:128:128:0:0%:74,54,0,0 -Example1_ref 7526 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:127:127:0:0%:74,53,0,0 -Example1_ref 7527 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:76,54,0,0 0/0:.:130:130:0:0%:76,54,0,0 -Example1_ref 7528 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:126:126:0:0%:73,53,0,0 -Example1_ref 7529 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:73,48,0,0 0/0:.:121:121:0:0%:73,48,0,0 -Example1_ref 7530 . C A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.5104E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:120:1:0.83%:72,48,0,1 0/0:.:122:120:1:0.83%:72,48,0,1 -Example1_ref 7531 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:124:124:0:0%:74,50,0,0 -Example1_ref 7532 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:126:126:0:0%:76,50,0,0 -Example1_ref 7533 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 7534 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:126:126:0:0%:76,50,0,0 -Example1_ref 7535 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:125:125:0:0%:75,50,0,0 -Example1_ref 7536 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 7537 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:124:124:0:0%:74,50,0,0 -Example1_ref 7538 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:0:0%:74,51,0,0 0/0:.:126:125:0:0%:74,51,0,0 -Example1_ref 7539 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 7540 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:119:119:0:0%:69,50,0,0 -Example1_ref 7541 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:122:122:0:0%:71,51,0,0 -Example1_ref 7542 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:72,52,0,0 0/0:.:124:124:0:0%:72,52,0,0 -Example1_ref 7543 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:122:122:0:0%:71,51,0,0 -Example1_ref 7544 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:124:124:0:0%:74,50,0,0 -Example1_ref 7545 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:123:123:0:0%:73,50,0,0 -Example1_ref 7546 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:74,48,0,0 0/0:.:122:122:0:0%:74,48,0,0 -Example1_ref 7547 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 7548 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:122:122:0:0%:73,49,0,0 -Example1_ref 7549 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:69,51,0,0 0/0:.:120:120:0:0%:69,51,0,0 -Example1_ref 7550 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:119:119:0:0%:69,50,0,0 -Example1_ref 7551 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:118:118:0:0%:68,50,0,0 -Example1_ref 7552 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 7553 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:120:120:0:0%:70,50,0,0 -Example1_ref 7554 . G A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:67,50,1,0 0/0:.:118:117:1:0.85%:67,50,1,0 -Example1_ref 7555 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:68,49,0,0 0/0:.:117:117:0:0%:68,49,0,0 -Example1_ref 7556 . G T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:68,49,1,0 0/0:.:118:117:1:0.85%:68,49,1,0 -Example1_ref 7557 . T C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.5106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:68,49,1,0 0/0:.:118:117:1:0.85%:68,49,1,0 -Example1_ref 7558 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:118:118:0:0%:68,50,0,0 -Example1_ref 7559 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 7560 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:118:118:0:0%:68,50,0,0 -Example1_ref 7561 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 7562 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 7563 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 7564 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:64,45,0,0 0/0:.:109:109:0:0%:64,45,0,0 -Example1_ref 7565 . C T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.5112E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:64,47,1,0 0/0:.:112:111:1:0.89%:64,47,1,0 -Example1_ref 7566 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 7567 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 7568 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 7569 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 7570 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:63,50,0,0 0/0:.:113:113:0:0%:63,50,0,0 -Example1_ref 7571 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 7572 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 7573 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:107:107:0:0%:59,48,0,0 -Example1_ref 7574 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:110:110:0:0%:62,48,0,0 -Example1_ref 7575 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 7576 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:110:110:0:0%:62,48,0,0 -Example1_ref 7577 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:110:110:0:0%:61,49,0,0 -Example1_ref 7578 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:110:110:0:0%:61,49,0,0 -Example1_ref 7579 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:108:108:0:0%:61,47,0,0 -Example1_ref 7580 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:58,44,0,0 0/0:.:102:102:0:0%:58,44,0,0 -Example1_ref 7581 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:59,44,0,0 0/0:.:103:103:0:0%:59,44,0,0 -Example1_ref 7582 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 7583 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 7584 . A G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.5124E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:1:0.99%:57,43,1,0 0/0:.:101:100:1:0.99%:57,43,1,0 -Example1_ref 7585 . G A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.5126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:99:1:1%:56,43,1,0 0/0:.:101:99:1:1%:56,43,1,0 -Example1_ref 7586 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:56,44,0,0 0/0:.:100:100:0:0%:56,44,0,0 -Example1_ref 7587 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:54,44,0,0 0/0:.:98:98:0:0%:54,44,0,0 -Example1_ref 7588 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:53,41,0,0 0/0:.:94:94:0:0%:53,41,0,0 -Example1_ref 7589 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:52,41,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 7590 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:53,41,0,0 0/0:.:94:94:0:0%:53,41,0,0 -Example1_ref 7591 . G T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=7.5137E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:1:1.09%:50,41,1,0 0/0:.:92:91:1:1.09%:50,41,1,0 -Example1_ref 7592 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:49,40,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 7593 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 7594 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:51,39,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 7595 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:50,40,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 7596 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:53,40,0,0 0/0:.:93:93:0:0%:53,40,0,0 -Example1_ref 7597 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:52,38,0,0 0/0:.:90:90:0:0%:52,38,0,0 -Example1_ref 7598 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:52,38,0,0 0/0:.:90:90:0:0%:52,38,0,0 -Example1_ref 7599 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:50,37,0,0 0/0:.:87:87:0:0%:50,37,0,0 -Example1_ref 7600 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:48,37,0,0 0/0:.:85:85:0:0%:48,37,0,0 -Example1_ref 7601 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:48,37,0,0 0/0:.:85:85:0:0%:48,37,0,0 -Example1_ref 7602 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:48,36,0,0 0/0:.:84:84:0:0%:48,36,0,0 -Example1_ref 7603 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:50,36,0,0 0/0:.:86:86:0:0%:50,36,0,0 -Example1_ref 7604 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:49,35,0,0 0/0:.:84:84:0:0%:49,35,0,0 -Example1_ref 7605 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:46,37,0,0 0/0:.:83:83:0:0%:46,37,0,0 -Example1_ref 7606 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:43,36,0,0 0/0:.:79:79:0:0%:43,36,0,0 -Example1_ref 7607 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:44,37,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 7608 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:48,36,0,0 0/0:.:84:84:0:0%:48,36,0,0 -Example1_ref 7609 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:45,36,0,0 0/0:.:81:81:0:0%:45,36,0,0 -Example1_ref 7610 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:44,37,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 7611 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:44,36,0,0 0/0:.:80:80:0:0%:44,36,0,0 -Example1_ref 7612 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:43,35,0,0 0/0:.:78:78:0:0%:43,35,0,0 -Example1_ref 7613 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 7614 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 7615 . G . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 7616 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:44,32,0,0 0/0:.:76:76:0:0%:44,32,0,0 -Example1_ref 7617 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:44,31,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 7618 . C . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:43,29,0,0 0/0:.:72:72:0:0%:43,29,0,0 -Example1_ref 7619 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:42,28,0,0 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 7620 . T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:42,30,0,0 0/0:.:72:72:0:0%:42,30,0,0 -Example1_ref 7621 . G . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:40,30,0,0 0/0:.:70:70:0:0%:40,30,0,0 -Example1_ref 7622 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:39,30,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 7623 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:41,30,0,0 0/0:.:71:71:0:0%:41,30,0,0 -Example1_ref 7624 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:40,30,0,0 0/0:.:70:70:0:0%:40,30,0,0 -Example1_ref 7625 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:41,30,0,0 0/0:.:71:71:0:0%:41,30,0,0 -Example1_ref 7626 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:41,29,0,0 0/0:.:70:70:0:0%:41,29,0,0 -Example1_ref 7627 . G . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 7628 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:40,30,0,0 0/0:.:70:70:0:0%:40,30,0,0 -Example1_ref 7629 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:37,27,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 7630 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:37,29,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 7631 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 7632 . T . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 7633 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 7634 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 7635 . T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:57:0:0%:28,29,0,0 0/0:.:59:57:0:0%:28,29,0,0 -Example1_ref 7636 . G . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:28,29,0,0 0/0:.:57:57:0:0%:28,29,0,0 -Example1_ref 7637 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:27,28,0,0 0/0:.:55:55:0:0%:27,28,0,0 -Example1_ref 7638 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:28,28,0,0 0/0:.:56:56:0:0%:28,28,0,0 -Example1_ref 7639 . G . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 7640 . G . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7641 . C . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:27,25,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 7642 . T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:28,29,0,0 0/0:.:57:57:0:0%:28,29,0,0 -Example1_ref 7643 . C . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 7644 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 7645 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:28,30,0,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 7646 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 7647 . C . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:25,29,0,0 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 7648 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7649 . C . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:25,30,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 7650 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:25,30,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 7651 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7652 . C . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 7653 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:27,31,0,0 0/0:.:58:58:0:0%:27,31,0,0 -Example1_ref 7654 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:25,30,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 7655 . C . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:25,29,0,0 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 7656 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 7657 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 7658 . G . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 7659 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 7660 . T . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 7661 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7662 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7663 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7664 . A AGCT . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=7.5225E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:55:1:1.79%:25,30,1,0 0/0:.:56:55:1:1.79%:25,30,1,0 -Example1_ref 7665 . G . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7666 . A T . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=7.5229E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:54:1:1.82%:25,29,0,1 0/0:.:55:54:1:1.82%:25,29,0,1 -Example1_ref 7667 . A ACTGTCTCT . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=7.5234E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:1:1.85%:24,29,1,0 0/0:.:54:53:1:1.85%:24,29,1,0 -Example1_ref 7668 . T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:24,28,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 7669 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:23,28,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 7670 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:22,29,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 7671 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7672 . A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 7673 . A . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:25,29,0,0 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 7674 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 7675 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 7676 . T . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 7677 . A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:25,28,0,0 0/0:.:53:53:0:0%:25,28,0,0 -Example1_ref 7678 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:23,28,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 7679 . G . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 7680 . T . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:26,25,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 7681 . T . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 7682 . T . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 7683 . T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:49:49:0:0%:23,26,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7684 . G . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:21,26,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 7685 . A . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:25,27,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 7686 . T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:25,27,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 7687 . C . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:26,26,0,0 0/0:.:52:52:0:0%:26,26,0,0 -Example1_ref 7688 . A . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:26,26,0,0 0/0:.:52:52:0:0%:26,26,0,0 -Example1_ref 7689 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:30,30,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 7690 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 7691 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 7692 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 7693 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:30,31,0,0 0/0:.:61:61:0:0%:30,31,0,0 -Example1_ref 7694 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 7695 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 7696 . G . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:28,32,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 7697 . C . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:26,31,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 7698 . T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:28,29,0,0 0/0:.:57:57:0:0%:28,29,0,0 -Example1_ref 7699 . G . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:29,28,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 7700 . C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:31,29,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 7701 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:32,29,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 7702 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:32,29,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 7703 . T . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 7704 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7705 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7706 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 7707 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:62:62:0:0%:34,28,0,0 -Example1_ref 7708 . C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7709 . C T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=7.5214E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:58:1:1.69%:32,26,1,0 0/0:.:59:58:1:1.69%:32,26,1,0 -Example1_ref 7710 . G . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 7711 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:62:62:0:0%:34,28,0,0 -Example1_ref 7712 . C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:33,27,0,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 7713 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 7714 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7715 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 7716 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:37,29,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 7717 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 7718 . G . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 7719 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7720 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 7721 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 7722 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:37,29,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 7723 . G T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=7.5177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:70:1:1.41%:40,30,1,0 0/0:.:71:70:1:1.41%:40,30,1,0 -Example1_ref 7724 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:40,26,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 7725 . G T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=7.5175E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:1:1.39%:41,30,1,0 0/0:.:72:71:1:1.39%:41,30,1,0 -Example1_ref 7726 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:45,30,0,0 0/0:.:75:75:0:0%:45,30,0,0 -Example1_ref 7727 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:47,31,0,0 0/0:.:78:78:0:0%:47,31,0,0 -Example1_ref 7728 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:48,32,0,0 0/0:.:80:80:0:0%:48,32,0,0 -Example1_ref 7729 . T G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=7.5153E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:81:1:1.22%:49,32,1,0 0/0:.:82:81:1:1.22%:49,32,1,0 -Example1_ref 7730 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:49,33,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 7731 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:52,32,0,0 0/0:.:84:84:0:0%:52,32,0,0 -Example1_ref 7732 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:52,30,0,0 0/0:.:82:82:0:0%:52,30,0,0 -Example1_ref 7733 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:49,33,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 7734 . C T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=7.5155E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:80:1:1.23%:47,33,1,0 0/0:.:81:80:1:1.23%:47,33,1,0 -Example1_ref 7735 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:49,32,0,0 0/0:.:81:81:0:0%:49,32,0,0 -Example1_ref 7736 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:49,33,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 7737 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:48,32,0,0 0/0:.:80:80:0:0%:48,32,0,0 -Example1_ref 7738 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:50,32,0,0 0/0:.:82:82:0:0%:50,32,0,0 -Example1_ref 7739 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:51,32,0,0 0/0:.:83:83:0:0%:51,32,0,0 -Example1_ref 7740 . C . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:51,32,0,0 0/0:.:83:83:0:0%:51,32,0,0 -Example1_ref 7741 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:51,32,0,0 0/0:.:83:83:0:0%:51,32,0,0 -Example1_ref 7742 . A T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=7.5146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:85:1:1.16%:53,32,1,0 0/0:.:86:85:1:1.16%:53,32,1,0 -Example1_ref 7743 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:54,32,0,0 0/0:.:86:86:0:0%:54,32,0,0 -Example1_ref 7744 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:52,32,0,0 0/0:.:84:84:0:0%:52,32,0,0 -Example1_ref 7745 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:53,32,0,0 0/0:.:85:85:0:0%:53,32,0,0 -Example1_ref 7746 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:53,33,0,0 0/0:.:86:86:0:0%:53,33,0,0 -Example1_ref 7747 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:53,34,0,0 0/0:.:87:87:0:0%:53,34,0,0 -Example1_ref 7748 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:52,34,0,0 0/0:.:86:86:0:0%:52,34,0,0 -Example1_ref 7749 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:52,34,0,0 0/0:.:86:86:0:0%:52,34,0,0 -Example1_ref 7750 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:53,33,0,0 0/0:.:86:86:0:0%:53,33,0,0 -Example1_ref 7751 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:88:88:0:0%:55,33,0,0 -Example1_ref 7752 . T C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=7.5148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:84:1:1.18%:53,31,1,0 0/0:.:85:84:1:1.18%:53,31,1,0 -Example1_ref 7753 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:55,31,0,0 0/0:.:86:86:0:0%:55,31,0,0 -Example1_ref 7754 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:52,33,0,0 0/0:.:85:85:0:0%:52,33,0,0 -Example1_ref 7755 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:88:88:0:0%:55,33,0,0 -Example1_ref 7756 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:88:88:0:0%:55,33,0,0 -Example1_ref 7757 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:88:88:0:0%:55,33,0,0 -Example1_ref 7758 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:88:88:0:0%:55,33,0,0 -Example1_ref 7759 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:54,33,0,0 0/0:.:87:87:0:0%:54,33,0,0 -Example1_ref 7760 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:55,34,0,0 0/0:.:89:89:0:0%:55,34,0,0 -Example1_ref 7761 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:54,34,0,0 0/0:.:88:88:0:0%:54,34,0,0 -Example1_ref 7762 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:55,34,0,0 0/0:.:89:89:0:0%:55,34,0,0 -Example1_ref 7763 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:54,34,0,0 0/0:.:88:88:0:0%:54,34,0,0 -Example1_ref 7764 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:51,34,0,0 0/0:.:85:85:0:0%:51,34,0,0 -Example1_ref 7765 . G T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=7.514E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:1:1.11%:54,35,1,0 0/0:.:90:89:1:1.11%:54,35,1,0 -Example1_ref 7766 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:54,37,0,0 0/0:.:91:91:0:0%:54,37,0,0 -Example1_ref 7767 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:56,37,0,0 0/0:.:93:93:0:0%:56,37,0,0 -Example1_ref 7768 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:56,34,0,0 0/0:.:90:90:0:0%:56,34,0,0 -Example1_ref 7769 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:56,37,0,0 0/0:.:93:93:0:0%:56,37,0,0 -Example1_ref 7770 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:55,36,0,0 0/0:.:91:91:0:0%:55,36,0,0 -Example1_ref 7771 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:53,36,0,0 0/0:.:89:89:0:0%:53,36,0,0 -Example1_ref 7772 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:55,37,0,0 0/0:.:92:92:0:0%:55,37,0,0 -Example1_ref 7773 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:54,38,0,0 0/0:.:92:92:0:0%:54,38,0,0 -Example1_ref 7774 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:92:0:0%:54,38,0,0 0/0:.:93:92:0:0%:54,38,0,0 -Example1_ref 7775 . A AG . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=7.5138E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:1:1.1%:53,37,0,1 0/0:.:91:90:1:1.1%:53,37,0,1 -Example1_ref 7776 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:54,37,0,0 0/0:.:91:91:0:0%:54,37,0,0 -Example1_ref 7777 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:54,36,0,0 0/0:.:90:90:0:0%:54,36,0,0 -Example1_ref 7778 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:55,36,0,0 0/0:.:91:91:0:0%:55,36,0,0 -Example1_ref 7779 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:56,37,0,0 0/0:.:93:93:0:0%:56,37,0,0 -Example1_ref 7780 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:55,38,0,0 0/0:.:93:93:0:0%:55,38,0,0 -Example1_ref 7781 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 7782 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 7783 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 7784 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 7785 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 7786 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 7787 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 7788 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:53,39,0,0 0/0:.:92:92:0:0%:53,39,0,0 -Example1_ref 7789 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:55,39,0,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 7790 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:57,40,0,0 0/0:.:97:97:0:0%:57,40,0,0 -Example1_ref 7791 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:57,39,0,0 0/0:.:96:96:0:0%:57,39,0,0 -Example1_ref 7792 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 7793 . C . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:56,38,0,0 0/0:.:94:94:0:0%:56,38,0,0 -Example1_ref 7794 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 7795 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 7796 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 7797 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:53,40,0,0 0/0:.:93:93:0:0%:53,40,0,0 -Example1_ref 7798 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 7799 . G A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=7.5132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:94:1:1.05%:54,40,1,0 0/0:.:95:94:1:1.05%:54,40,1,0 -Example1_ref 7800 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:54,39,0,0 0/0:.:93:93:0:0%:54,39,0,0 -Example1_ref 7801 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 7802 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:57,40,0,0 0/0:.:97:97:0:0%:57,40,0,0 -Example1_ref 7803 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 7804 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:57,40,0,0 0/0:.:97:97:0:0%:57,40,0,0 -Example1_ref 7805 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:58,41,0,0 0/0:.:99:99:0:0%:58,41,0,0 -Example1_ref 7806 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:56,43,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 7807 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:58,43,0,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 7808 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:59,43,0,0 0/0:.:102:102:0:0%:59,43,0,0 -Example1_ref 7809 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:56,45,0,0 0/0:.:101:101:0:0%:56,45,0,0 -Example1_ref 7810 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:57,45,0,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 7811 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 7812 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:57,45,0,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 7813 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:59,44,0,0 0/0:.:103:103:0:0%:59,44,0,0 -Example1_ref 7814 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 7815 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:60,46,0,0 0/0:.:106:106:0:0%:60,46,0,0 -Example1_ref 7816 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:54,43,0,0 0/0:.:97:97:0:0%:54,43,0,0 -Example1_ref 7817 . C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:58,45,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 7818 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:61,45,0,0 0/0:.:106:106:0:0%:61,45,0,0 -Example1_ref 7819 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:59,45,0,0 0/0:.:104:104:0:0%:59,45,0,0 -Example1_ref 7820 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:108:108:0:0%:61,47,0,0 -Example1_ref 7821 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:62,47,0,0 0/0:.:109:109:0:0%:62,47,0,0 -Example1_ref 7822 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 7823 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:63,48,0,0 0/0:.:111:111:0:0%:63,48,0,0 -Example1_ref 7824 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 7825 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:65,49,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 7826 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 7827 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:65,50,0,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 7828 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:118:118:0:0%:69,49,0,0 -Example1_ref 7829 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:119:119:0:0%:69,50,0,0 -Example1_ref 7830 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:119:119:0:0%:70,49,0,0 -Example1_ref 7831 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:120:120:0:0%:70,50,0,0 -Example1_ref 7832 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:122:122:0:0%:71,51,0,0 -Example1_ref 7833 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:119:119:0:0%:69,50,0,0 -Example1_ref 7834 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:119:119:0:0%:69,50,0,0 -Example1_ref 7835 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:119:119:0:0%:71,48,0,0 -Example1_ref 7836 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:120:120:0:0%:72,48,0,0 -Example1_ref 7837 . T A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:71,47,0,1 0/0:.:119:118:1:0.84%:71,47,0,1 -Example1_ref 7838 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:120:120:0:0%:72,48,0,0 -Example1_ref 7839 . C CCTGTCTCT . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:71,48,1,0 0/0:.:120:119:1:0.83%:71,48,1,0 -Example1_ref 7840 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:123:123:0:0%:73,50,0,0 -Example1_ref 7841 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 7842 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:70,51,0,0 0/0:.:121:121:0:0%:70,51,0,0 -Example1_ref 7843 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:120:120:0:0%:73,47,0,0 -Example1_ref 7844 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:74,48,0,0 0/0:.:122:122:0:0%:74,48,0,0 -Example1_ref 7845 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:73,48,0,0 0/0:.:121:121:0:0%:73,48,0,0 -Example1_ref 7846 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:119:119:0:0%:71,48,0,0 -Example1_ref 7847 . C A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:71,48,1,0 0/0:.:120:119:1:0.83%:71,48,1,0 -Example1_ref 7848 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 7849 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:125:125:0:0%:73,52,0,0 -Example1_ref 7850 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:128:128:0:0%:76,52,0,0 -Example1_ref 7851 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:125:125:0:0%:75,50,0,0 -Example1_ref 7852 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:77,51,0,0 0/0:.:128:128:0:0%:77,51,0,0 -Example1_ref 7853 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:129:129:0:0%:76,53,0,0 -Example1_ref 7854 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:128:128:0:0%:75,53,0,0 -Example1_ref 7855 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:75,51,0,0 0/0:.:126:126:0:0%:75,51,0,0 -Example1_ref 7856 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:128:128:0:0%:76,52,0,0 -Example1_ref 7857 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:127:127:0:0%:77,50,0,0 -Example1_ref 7858 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:126:126:0:0%:76,50,0,0 -Example1_ref 7859 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:123:123:0:0%:75,48,0,0 -Example1_ref 7860 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:77,51,0,0 0/0:.:128:128:0:0%:77,51,0,0 -Example1_ref 7861 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:125:125:0:0%:75,50,0,0 -Example1_ref 7862 . G A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=7.5101E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:1:0.81%:73,50,1,0 0/0:.:124:123:1:0.81%:73,50,1,0 -Example1_ref 7863 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:122:122:0:0%:71,51,0,0 -Example1_ref 7864 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:71,51,0,0 0/0:.:123:122:0:0%:71,51,0,0 -Example1_ref 7865 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:123:123:0:0%:73,50,0,0 -Example1_ref 7866 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 7867 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:70,52,0,0 0/0:.:122:122:0:0%:70,52,0,0 -Example1_ref 7868 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:72,53,0,0 0/0:.:125:125:0:0%:72,53,0,0 -Example1_ref 7869 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:127:127:0:0%:73,54,0,0 -Example1_ref 7870 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:125:125:0:0%:71,54,0,0 -Example1_ref 7871 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:71,53,0,0 0/0:.:124:124:0:0%:71,53,0,0 -Example1_ref 7872 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:125:125:0:0%:71,54,0,0 -Example1_ref 7873 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:130:130:0:0%:73,57,0,0 -Example1_ref 7874 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:129:129:0:0%:72,57,0,0 -Example1_ref 7875 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:126:126:0:0%:72,54,0,0 -Example1_ref 7876 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:71,58,0,0 0/0:.:129:129:0:0%:71,58,0,0 -Example1_ref 7877 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:128:128:0:0%:71,57,0,0 -Example1_ref 7878 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:70,58,0,0 0/0:.:128:128:0:0%:70,58,0,0 -Example1_ref 7879 . A ACTGTCTCT . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=7.5101E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:1:0.81%:65,58,1,0 0/0:.:124:123:1:0.81%:65,58,1,0 -Example1_ref 7880 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 7881 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 7882 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:65,55,0,0 0/0:.:120:120:0:0%:65,55,0,0 -Example1_ref 7883 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:66,57,0,0 0/0:.:123:123:0:0%:66,57,0,0 -Example1_ref 7884 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 7885 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 7886 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:131:131:0:0%:72,59,0,0 -Example1_ref 7887 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:71,61,0,0 0/0:.:132:132:0:0%:71,61,0,0 -Example1_ref 7888 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:69,64,0,0 0/0:.:133:133:0:0%:69,64,0,0 -Example1_ref 7889 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:75,61,0,0 0/0:.:136:136:0:0%:75,61,0,0 -Example1_ref 7890 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:72,69,0,0 0/0:.:141:141:0:0%:72,69,0,0 -Example1_ref 7891 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:74,70,0,0 0/0:.:144:144:0:0%:74,70,0,0 -Example1_ref 7892 . T A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:73,67,0,1 0/0:.:141:140:1:0.71%:73,67,0,1 -Example1_ref 7893 . A T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:73,71,1,0 0/0:.:145:144:1:0.69%:73,71,1,0 -Example1_ref 7894 . A ACTGTC . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=6.5795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:137:3:2.14%:70,67,3,0 0/0:.:140:137:3:2.14%:70,67,3,0 -Example1_ref 7895 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:68,70,0,0 0/0:.:138:138:0:0%:68,70,0,0 -Example1_ref 7896 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:70,71,0,0 0/0:.:141:141:0:0%:70,71,0,0 -Example1_ref 7897 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:69,73,0,0 0/0:.:142:142:0:0%:69,73,0,0 -Example1_ref 7898 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:69,73,0,0 0/0:.:142:142:0:0%:69,73,0,0 -Example1_ref 7899 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:67,75,0,0 0/0:.:142:142:0:0%:67,75,0,0 -Example1_ref 7900 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:141:141:0:0%:67,74,0,0 -Example1_ref 7901 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:141:141:0:0%:67,74,0,0 -Example1_ref 7902 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:67,73,0,0 0/0:.:140:140:0:0%:67,73,0,0 -Example1_ref 7903 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:69,76,0,0 0/0:.:145:145:0:0%:69,76,0,0 -Example1_ref 7904 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:69,76,0,0 0/0:.:145:145:0:0%:69,76,0,0 -Example1_ref 7905 . C T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:67,72,1,0 0/0:.:140:139:1:0.71%:67,72,1,0 -Example1_ref 7906 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:141:141:0:0%:67,74,0,0 -Example1_ref 7907 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:68,75,0,0 0/0:.:143:143:0:0%:68,75,0,0 -Example1_ref 7908 . G A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:66,68,0,1 0/0:.:135:134:1:0.74%:66,68,0,1 -Example1_ref 7909 . G T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:65,70,0,1 0/0:.:136:135:1:0.74%:65,70,0,1 -Example1_ref 7910 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:141:141:0:0%:67,74,0,0 -Example1_ref 7911 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:66,72,0,0 0/0:.:138:138:0:0%:66,72,0,0 -Example1_ref 7912 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:66,73,0,0 0/0:.:139:139:0:0%:66,73,0,0 -Example1_ref 7913 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:65,73,0,0 0/0:.:138:138:0:0%:65,73,0,0 -Example1_ref 7914 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:64,72,0,0 0/0:.:136:136:0:0%:64,72,0,0 -Example1_ref 7915 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:64,73,0,0 0/0:.:137:137:0:0%:64,73,0,0 -Example1_ref 7916 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:60,71,0,0 0/0:.:131:131:0:0%:60,71,0,0 -Example1_ref 7917 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 7918 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:58,70,0,0 0/0:.:128:128:0:0%:58,70,0,0 -Example1_ref 7919 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:128:128:0:0%:57,71,0,0 -Example1_ref 7920 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:130:130:0:0%:58,72,0,0 -Example1_ref 7921 . G A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:56,73,0,1 0/0:.:130:129:1:0.77%:56,73,0,1 -Example1_ref 7922 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:132:132:0:0%:58,74,0,0 -Example1_ref 7923 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:131:131:0:0%:58,73,0,0 -Example1_ref 7924 . C G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:57,73,1,0 0/0:.:131:130:1:0.76%:57,73,1,0 -Example1_ref 7925 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:57,74,0,0 0/0:.:131:131:0:0%:57,74,0,0 -Example1_ref 7926 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:57,76,0,0 0/0:.:133:133:0:0%:57,76,0,0 -Example1_ref 7927 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 7928 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:55,76,0,0 0/0:.:131:131:0:0%:55,76,0,0 -Example1_ref 7929 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:57,77,0,0 0/0:.:134:134:0:0%:57,77,0,0 -Example1_ref 7930 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:56,74,0,0 0/0:.:130:130:0:0%:56,74,0,0 -Example1_ref 7931 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:57,77,0,0 0/0:.:134:134:0:0%:57,77,0,0 -Example1_ref 7932 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:54,78,0,0 0/0:.:132:132:0:0%:54,78,0,0 -Example1_ref 7933 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:55,79,0,0 0/0:.:134:134:0:0%:55,79,0,0 -Example1_ref 7934 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:54,78,0,0 0/0:.:132:132:0:0%:54,78,0,0 -Example1_ref 7935 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 7936 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:58,77,0,0 0/0:.:135:135:0:0%:58,77,0,0 -Example1_ref 7937 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:58,76,0,0 0/0:.:134:134:0:0%:58,76,0,0 -Example1_ref 7938 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:57,76,0,0 0/0:.:133:133:0:0%:57,76,0,0 -Example1_ref 7939 . T A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:57,75,0,1 0/0:.:133:132:1:0.75%:57,75,0,1 -Example1_ref 7940 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 7941 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:53,76,0,0 0/0:.:129:129:0:0%:53,76,0,0 -Example1_ref 7942 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:56,79,0,0 0/0:.:135:135:0:0%:56,79,0,0 -Example1_ref 7943 . C CCT . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:57,76,1,0 0/0:.:134:133:1:0.75%:57,76,1,0 -Example1_ref 7944 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:57,78,0,0 0/0:.:135:135:0:0%:57,78,0,0 -Example1_ref 7945 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:59,80,0,0 0/0:.:139:139:0:0%:59,80,0,0 -Example1_ref 7946 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:59,81,0,0 0/0:.:140:140:0:0%:59,81,0,0 -Example1_ref 7947 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:61,81,0,0 0/0:.:142:142:0:0%:61,81,0,0 -Example1_ref 7948 . T A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:60,80,1,0 0/0:.:141:140:1:0.71%:60,80,1,0 -Example1_ref 7949 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 7950 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:140:140:0:0%:62,78,0,0 -Example1_ref 7951 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:61,80,0,0 0/0:.:141:141:0:0%:61,80,0,0 -Example1_ref 7952 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:140:140:0:0%:62,78,0,0 -Example1_ref 7953 . G GCTGTCTCTT . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:61,80,1,0 0/0:.:142:141:1:0.7%:61,80,1,0 -Example1_ref 7954 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 7955 . G C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:60,76,1,0 0/0:.:137:136:1:0.73%:60,76,1,0 -Example1_ref 7956 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:138:138:0:0%:61,77,0,0 -Example1_ref 7957 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:59,73,0,0 0/0:.:132:132:0:0%:59,73,0,0 -Example1_ref 7958 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:135:135:0:0%:60,75,0,0 -Example1_ref 7959 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:135:135:0:0%:61,74,0,0 -Example1_ref 7960 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:135:135:0:0%:60,75,0,0 -Example1_ref 7961 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 7962 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:135:135:0:0%:61,74,0,0 -Example1_ref 7963 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:63,76,0,0 0/0:.:139:139:0:0%:63,76,0,0 -Example1_ref 7964 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:62,77,0,0 0/0:.:139:139:0:0%:62,77,0,0 -Example1_ref 7965 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:62,80,0,0 0/0:.:142:142:0:0%:62,80,0,0 -Example1_ref 7966 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:62,81,0,0 0/0:.:143:143:0:0%:62,81,0,0 -Example1_ref 7967 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:140:140:0:0%:62,78,0,0 -Example1_ref 7968 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:58,80,0,0 0/0:.:138:138:0:0%:58,80,0,0 -Example1_ref 7969 . G A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:55,78,0,1 0/0:.:134:133:1:0.75%:55,78,0,1 -Example1_ref 7970 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:60,80,0,0 0/0:.:140:140:0:0%:60,80,0,0 -Example1_ref 7971 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:60,79,0,0 0/0:.:139:139:0:0%:60,79,0,0 -Example1_ref 7972 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:62,77,0,0 0/0:.:139:139:0:0%:62,77,0,0 -Example1_ref 7973 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:59,78,0,0 0/0:.:137:137:0:0%:59,78,0,0 -Example1_ref 7974 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:61,80,0,0 0/0:.:141:141:0:0%:61,80,0,0 -Example1_ref 7975 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:63,80,0,0 0/0:.:143:143:0:0%:63,80,0,0 -Example1_ref 7976 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:65,81,0,0 0/0:.:146:146:0:0%:65,81,0,0 -Example1_ref 7977 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:0:0%:66,79,0,0 0/0:.:146:145:0:0%:66,79,0,0 -Example1_ref 7978 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:66,79,0,0 0/0:.:145:145:0:0%:66,79,0,0 -Example1_ref 7979 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:69,80,0,0 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 7980 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:68,80,0,0 0/0:.:148:148:0:0%:68,80,0,0 -Example1_ref 7981 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:67,81,0,0 0/0:.:148:148:0:0%:67,81,0,0 -Example1_ref 7982 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:69,81,0,0 0/0:.:150:150:0:0%:69,81,0,0 -Example1_ref 7983 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:69,82,0,0 0/0:.:151:151:0:0%:69,82,0,0 -Example1_ref 7984 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:68,82,0,0 0/0:.:150:150:0:0%:68,82,0,0 -Example1_ref 7985 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:69,86,0,0 0/0:.:155:155:0:0%:69,86,0,0 -Example1_ref 7986 . A ACCTGTCT . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:70,89,1,0 0/0:.:160:159:1:0.62%:70,89,1,0 -Example1_ref 7987 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:77,86,0,0 0/0:.:163:163:0:0%:77,86,0,0 -Example1_ref 7988 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:76,84,0,0 0/0:.:160:160:0:0%:76,84,0,0 -Example1_ref 7989 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:75,85,0,0 0/0:.:160:160:0:0%:75,85,0,0 -Example1_ref 7990 . C CCTG . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:76,90,1,0 0/0:.:167:166:1:0.6%:76,90,1,0 -Example1_ref 7991 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:0:0%:76,88,0,0 0/0:.:165:164:0:0%:76,88,0,0 -Example1_ref 7992 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:76,91,0,0 0/0:.:167:167:0:0%:76,91,0,0 -Example1_ref 7993 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:77,86,0,0 0/0:.:163:163:0:0%:77,86,0,0 -Example1_ref 7994 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:77,90,0,0 0/0:.:167:167:0:0%:77,90,0,0 -Example1_ref 7995 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:80,91,0,0 0/0:.:171:171:0:0%:80,91,0,0 -Example1_ref 7996 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:78,87,0,0 0/0:.:165:165:0:0%:78,87,0,0 -Example1_ref 7997 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:80,94,0,0 0/0:.:174:174:0:0%:80,94,0,0 -Example1_ref 7998 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:81,99,0,0 0/0:.:180:180:0:0%:81,99,0,0 -Example1_ref 7999 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:82,101,0,0 0/0:.:183:183:0:0%:82,101,0,0 -Example1_ref 8000 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:82,103,0,0 0/0:.:185:185:0:0%:82,103,0,0 -Example1_ref 8001 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:83,102,0,0 0/0:.:185:185:0:0%:83,102,0,0 -Example1_ref 8002 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:83,104,0,0 0/0:.:187:187:0:0%:83,104,0,0 -Example1_ref 8003 . A G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:84,104,0,1 0/0:.:189:188:1:0.53%:84,104,0,1 -Example1_ref 8004 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:90,101,0,0 0/0:.:191:191:0:0%:90,101,0,0 -Example1_ref 8005 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:91,103,0,0 0/0:.:194:194:0:0%:91,103,0,0 -Example1_ref 8006 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:93,100,0,0 0/0:.:193:193:0:0%:93,100,0,0 -Example1_ref 8007 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:92,100,0,0 0/0:.:192:192:0:0%:92,100,0,0 -Example1_ref 8008 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:91,100,0,0 0/0:.:191:191:0:0%:91,100,0,0 -Example1_ref 8009 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:208:208:0:0%:100,108,0,0 -Example1_ref 8010 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:101,103,0,0 0/0:.:204:204:0:0%:101,103,0,0 -Example1_ref 8011 . A ATCTGTCTCT . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:102,103,1,0 0/0:.:206:205:1:0.49%:102,103,1,0 -Example1_ref 8012 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:101,101,0,0 0/0:.:202:202:0:0%:101,101,0,0 -Example1_ref 8013 . A T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:104,104,0,1 0/0:.:209:208:1:0.48%:104,104,0,1 -Example1_ref 8014 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:102,101,0,0 0/0:.:203:203:0:0%:102,101,0,0 -Example1_ref 8015 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:210:210:0:0%:105,105,0,0 -Example1_ref 8016 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:105,103,0,0 0/0:.:208:208:0:0%:105,103,0,0 -Example1_ref 8017 . A T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:105,104,1,0 0/0:.:210:209:1:0.48%:105,104,1,0 -Example1_ref 8018 . C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:0:0%:103,103,0,0 0/0:.:207:206:0:0%:103,103,0,0 -Example1_ref 8019 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:205:205:0:0%:102,103,0,0 -Example1_ref 8020 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:100,104,0,0 0/0:.:204:204:0:0%:100,104,0,0 -Example1_ref 8021 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:100,107,0,0 0/0:.:207:207:0:0%:100,107,0,0 -Example1_ref 8022 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:112,107,0,0 0/0:.:219:219:0:0%:112,107,0,0 -Example1_ref 8023 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:112,109,0,0 0/0:.:221:221:0:0%:112,109,0,0 -Example1_ref 8024 . C A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=6.8834E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:222:2:0.89%:114,108,0,2 0/0:.:224:222:2:0.89%:114,108,0,2 -Example1_ref 8025 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:115,115,0,0 0/0:.:230:230:0:0%:115,115,0,0 -Example1_ref 8026 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:116,117,0,0 0/0:.:233:233:0:0%:116,117,0,0 -Example1_ref 8027 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:115,110,0,0 0/0:.:225:225:0:0%:115,110,0,0 -Example1_ref 8028 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:116,114,0,0 0/0:.:230:230:0:0%:116,114,0,0 -Example1_ref 8029 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:115,117,0,0 0/0:.:232:232:0:0%:115,117,0,0 -Example1_ref 8030 . G . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:114,116,0,0 0/0:.:230:230:0:0%:114,116,0,0 -Example1_ref 8031 . T A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:116,114,1,0 0/0:.:231:230:1:0.43%:116,114,1,0 -Example1_ref 8032 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:114,114,0,0 0/0:.:228:228:0:0%:114,114,0,0 -Example1_ref 8033 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:115,112,0,0 0/0:.:227:227:0:0%:115,112,0,0 -Example1_ref 8034 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:231:231:0:0%:114,117,0,0 -Example1_ref 8035 . C A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:116,103,0,1 0/0:.:220:219:1:0.45%:116,103,0,1 -Example1_ref 8036 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:236:236:0:0%:114,122,0,0 -Example1_ref 8037 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:115,119,0,0 0/0:.:234:234:0:0%:115,119,0,0 -Example1_ref 8038 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:116,122,0,0 0/0:.:238:238:0:0%:116,122,0,0 -Example1_ref 8039 . G A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:113,120,0,1 0/0:.:234:233:1:0.43%:113,120,0,1 -Example1_ref 8040 . C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:110,116,0,0 0/0:.:226:226:0:0%:110,116,0,0 -Example1_ref 8041 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:111,126,0,0 0/0:.:237:237:0:0%:111,126,0,0 -Example1_ref 8042 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:112,126,0,0 0/0:.:238:238:0:0%:112,126,0,0 -Example1_ref 8043 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:113,122,0,0 0/0:.:235:235:0:0%:113,122,0,0 -Example1_ref 8044 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:114,124,0,0 0/0:.:238:238:0:0%:114,124,0,0 -Example1_ref 8045 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:115,125,0,0 0/0:.:240:240:0:0%:115,125,0,0 -Example1_ref 8046 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:115,126,0,0 0/0:.:241:241:0:0%:115,126,0,0 -Example1_ref 8047 . C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:231:231:0:0%:114,117,0,0 -Example1_ref 8048 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:236:236:0:0%:114,122,0,0 -Example1_ref 8049 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:243:243:0:0%:117,126,0,0 -Example1_ref 8050 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:236:236:0:0%:114,122,0,0 -Example1_ref 8051 . T C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:115,125,0,1 0/0:.:241:240:1:0.41%:115,125,0,1 -Example1_ref 8052 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:243:243:0:0%:117,126,0,0 -Example1_ref 8053 . G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:117,124,0,0 0/0:.:241:241:0:0%:117,124,0,0 -Example1_ref 8054 . G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:116,125,0,0 0/0:.:241:241:0:0%:116,125,0,0 -Example1_ref 8055 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:243:243:0:0%:117,126,0,0 -Example1_ref 8056 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:117,125,0,0 0/0:.:243:242:0:0%:117,125,0,0 -Example1_ref 8057 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:118,126,0,0 0/0:.:244:244:0:0%:118,126,0,0 -Example1_ref 8058 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:119,124,0,0 0/0:.:243:243:0:0%:119,124,0,0 -Example1_ref 8059 . A T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:118,125,1,0 0/0:.:244:243:1:0.41%:118,125,1,0 -Example1_ref 8060 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:120,122,0,0 0/0:.:242:242:0:0%:120,122,0,0 -Example1_ref 8061 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:117,124,0,0 0/0:.:241:241:0:0%:117,124,0,0 -Example1_ref 8062 . G T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:117,124,1,0 0/0:.:242:241:1:0.41%:117,124,1,0 -Example1_ref 8063 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:118,120,0,0 0/0:.:238:238:0:0%:118,120,0,0 -Example1_ref 8064 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:121,117,0,0 0/0:.:238:238:0:0%:121,117,0,0 -Example1_ref 8065 . AT A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:119,120,1,0 0/0:.:240:239:1:0.42%:119,120,1,0 -Example1_ref 8066 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:119,120,0,0 0/0:.:239:239:0:0%:119,120,0,0 -Example1_ref 8067 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:122,120,0,0 0/0:.:242:242:0:0%:122,120,0,0 -Example1_ref 8068 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:126,121,0,0 0/0:.:247:247:0:0%:126,121,0,0 -Example1_ref 8069 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:126,118,0,0 0/0:.:244:244:0:0%:126,118,0,0 -Example1_ref 8070 . C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:125,117,0,0 0/0:.:242:242:0:0%:125,117,0,0 -Example1_ref 8071 . G T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:127,118,1,0 0/0:.:246:245:1:0.41%:127,118,1,0 -Example1_ref 8072 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:129,118,0,0 0/0:.:247:247:0:0%:129,118,0,0 -Example1_ref 8073 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:130,114,0,0 0/0:.:244:244:0:0%:130,114,0,0 -Example1_ref 8074 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:130,116,0,0 0/0:.:246:246:0:0%:130,116,0,0 -Example1_ref 8075 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:129,120,0,0 0/0:.:249:249:0:0%:129,120,0,0 -Example1_ref 8076 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:127,116,0,0 0/0:.:243:243:0:0%:127,116,0,0 -Example1_ref 8077 . A T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:126,113,1,0 0/0:.:240:239:1:0.42%:126,113,1,0 -Example1_ref 8078 . G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:0:0%:128,110,0,0 0/0:.:239:238:0:0%:128,110,0,0 -Example1_ref 8079 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:123,105,0,0 0/0:.:228:228:0:0%:123,105,0,0 -Example1_ref 8080 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:127,107,0,0 0/0:.:234:234:0:0%:127,107,0,0 -Example1_ref 8081 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:127,110,0,0 0/0:.:237:237:0:0%:127,110,0,0 -Example1_ref 8082 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:127,108,0,0 0/0:.:235:235:0:0%:127,108,0,0 -Example1_ref 8083 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:127,109,0,0 0/0:.:236:236:0:0%:127,109,0,0 -Example1_ref 8084 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:130,105,0,0 0/0:.:235:235:0:0%:130,105,0,0 -Example1_ref 8085 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:128,107,0,0 0/0:.:235:235:0:0%:128,107,0,0 -Example1_ref 8086 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:129,109,0,0 0/0:.:238:238:0:0%:129,109,0,0 -Example1_ref 8087 . G T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:131,102,1,0 0/0:.:234:233:1:0.43%:131,102,1,0 -Example1_ref 8088 . G . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:131,105,0,0 0/0:.:236:236:0:0%:131,105,0,0 -Example1_ref 8089 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:132,104,0,0 0/0:.:236:236:0:0%:132,104,0,0 -Example1_ref 8090 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:132,103,0,0 0/0:.:235:235:0:0%:132,103,0,0 -Example1_ref 8091 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:135,104,0,0 0/0:.:239:239:0:0%:135,104,0,0 -Example1_ref 8092 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:133,104,0,0 0/0:.:237:237:0:0%:133,104,0,0 -Example1_ref 8093 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:132,104,0,0 0/0:.:236:236:0:0%:132,104,0,0 -Example1_ref 8094 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:132,104,0,0 0/0:.:236:236:0:0%:132,104,0,0 -Example1_ref 8095 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:135,103,0,0 0/0:.:238:238:0:0%:135,103,0,0 -Example1_ref 8096 . G . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:131,105,0,0 0/0:.:236:236:0:0%:131,105,0,0 -Example1_ref 8097 . G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:135,104,0,0 0/0:.:239:239:0:0%:135,104,0,0 -Example1_ref 8098 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:136,104,0,0 0/0:.:240:240:0:0%:136,104,0,0 -Example1_ref 8099 . C . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:136,103,0,0 0/0:.:239:239:0:0%:136,103,0,0 -Example1_ref 8100 . A G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:137,101,0,1 0/0:.:239:238:1:0.42%:137,101,0,1 -Example1_ref 8101 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:136,101,0,0 0/0:.:237:237:0:0%:136,101,0,0 -Example1_ref 8102 . G T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:135,101,1,0 0/0:.:237:236:1:0.42%:135,101,1,0 -Example1_ref 8103 . G T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:135,103,1,0 0/0:.:239:238:1:0.42%:135,103,1,0 -Example1_ref 8104 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:140,103,0,0 0/0:.:243:243:0:0%:140,103,0,0 -Example1_ref 8105 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:138,108,0,0 0/0:.:246:246:0:0%:138,108,0,0 -Example1_ref 8106 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:138,105,0,0 0/0:.:243:243:0:0%:138,105,0,0 -Example1_ref 8107 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:137,108,0,0 0/0:.:245:245:0:0%:137,108,0,0 -Example1_ref 8108 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:135,109,0,0 0/0:.:244:244:0:0%:135,109,0,0 -Example1_ref 8109 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:138,107,0,0 0/0:.:245:245:0:0%:138,107,0,0 -Example1_ref 8110 . G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:141,109,0,0 0/0:.:250:250:0:0%:141,109,0,0 -Example1_ref 8111 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:143,104,0,0 0/0:.:247:247:0:0%:143,104,0,0 -Example1_ref 8112 . G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:139,102,0,0 0/0:.:241:241:0:0%:139,102,0,0 -Example1_ref 8113 . C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:138,99,0,0 0/0:.:237:237:0:0%:138,99,0,0 -Example1_ref 8114 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:142,102,0,0 0/0:.:244:244:0:0%:142,102,0,0 -Example1_ref 8115 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:145,105,0,0 0/0:.:250:250:0:0%:145,105,0,0 -Example1_ref 8116 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:145,104,0,0 0/0:.:249:249:0:0%:145,104,0,0 -Example1_ref 8117 . C . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:144,101,0,0 0/0:.:245:245:0:0%:144,101,0,0 -Example1_ref 8118 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:0:0%:143,106,0,0 0/0:.:250:249:0:0%:143,106,0,0 -Example1_ref 8119 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:141,106,0,0 0/0:.:247:247:0:0%:141,106,0,0 -Example1_ref 8120 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:141,105,0,0 0/0:.:246:246:0:0%:141,105,0,0 -Example1_ref 8121 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:145,105,0,0 0/0:.:250:250:0:0%:145,105,0,0 -Example1_ref 8122 . C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:143,99,0,0 0/0:.:242:242:0:0%:143,99,0,0 -Example1_ref 8123 . C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:140,102,0,0 0/0:.:242:242:0:0%:140,102,0,0 -Example1_ref 8124 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:248:248:0:0%:144,104,0,0 -Example1_ref 8125 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:142,104,0,0 0/0:.:246:246:0:0%:142,104,0,0 -Example1_ref 8126 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:143,102,0,0 0/0:.:245:245:0:0%:143,102,0,0 -Example1_ref 8127 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:143,102,0,0 0/0:.:245:245:0:0%:143,102,0,0 -Example1_ref 8128 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:146,104,0,0 0/0:.:250:250:0:0%:146,104,0,0 -Example1_ref 8129 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:145,102,0,0 0/0:.:247:247:0:0%:145,102,0,0 -Example1_ref 8130 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:144,103,0,0 0/0:.:247:247:0:0%:144,103,0,0 -Example1_ref 8131 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:145,101,0,0 0/0:.:246:246:0:0%:145,101,0,0 -Example1_ref 8132 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:248:248:0:0%:144,104,0,0 -Example1_ref 8133 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:145,102,0,0 0/0:.:247:247:0:0%:145,102,0,0 -Example1_ref 8134 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:141,104,0,0 0/0:.:245:245:0:0%:141,104,0,0 -Example1_ref 8135 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:143,104,0,0 0/0:.:247:247:0:0%:143,104,0,0 -Example1_ref 8136 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:142,104,0,0 0/0:.:246:246:0:0%:142,104,0,0 -Example1_ref 8137 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:142,105,0,0 0/0:.:247:247:0:0%:142,105,0,0 -Example1_ref 8138 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:248:248:0:0%:144,104,0,0 -Example1_ref 8139 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:144,105,0,0 0/0:.:249:249:0:0%:144,105,0,0 -Example1_ref 8140 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:141,105,0,0 0/0:.:246:246:0:0%:141,105,0,0 -Example1_ref 8141 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:142,104,0,0 0/0:.:246:246:0:0%:142,104,0,0 -Example1_ref 8142 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:145,108,0,0 0/0:.:253:253:0:0%:145,108,0,0 -Example1_ref 8143 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:248:248:0:0%:144,104,0,0 -Example1_ref 8144 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:140,105,0,0 0/0:.:245:245:0:0%:140,105,0,0 -Example1_ref 8145 . G C . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:234:1:0.43%:127,107,0,1 0/0:.:236:234:1:0.43%:127,107,0,1 -Example1_ref 8146 . G T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:134,106,1,0 0/0:.:241:240:1:0.41%:134,106,1,0 -Example1_ref 8147 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:138,109,0,0 0/0:.:247:247:0:0%:138,109,0,0 -Example1_ref 8148 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:141,110,0,0 0/0:.:251:251:0:0%:141,110,0,0 -Example1_ref 8149 . C CAG . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:144,108,0,1 0/0:.:253:252:1:0.4%:144,108,0,1 -Example1_ref 8150 . A C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:145,109,0,1 0/0:.:255:254:1:0.39%:145,109,0,1 -Example1_ref 8151 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:149,111,0,0 0/0:.:260:260:0:0%:149,111,0,0 -Example1_ref 8152 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:148,110,0,0 0/0:.:258:258:0:0%:148,110,0,0 -Example1_ref 8153 . C A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:147,110,0,1 0/0:.:258:257:1:0.39%:147,110,0,1 -Example1_ref 8154 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:150,114,0,0 0/0:.:264:264:0:0%:150,114,0,0 -Example1_ref 8155 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:150,111,0,0 0/0:.:261:261:0:0%:150,111,0,0 -Example1_ref 8156 . G T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:149,111,1,0 0/0:.:261:260:1:0.38%:149,111,1,0 -Example1_ref 8157 . T G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:153,113,0,1 0/0:.:267:266:1:0.37%:153,113,0,1 -Example1_ref 8158 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:149,109,0,0 0/0:.:258:258:0:0%:149,109,0,0 -Example1_ref 8159 . C . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:149,110,0,0 0/0:.:259:259:0:0%:149,110,0,0 -Example1_ref 8160 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:150,112,0,0 0/0:.:262:262:0:0%:150,112,0,0 -Example1_ref 8161 . G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:146,114,0,0 0/0:.:260:260:0:0%:146,114,0,0 -Example1_ref 8162 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:146,117,0,0 0/0:.:263:263:0:0%:146,117,0,0 -Example1_ref 8163 . T . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:150,119,0,0 0/0:.:269:269:0:0%:150,119,0,0 -Example1_ref 8164 . G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:143,116,0,0 0/0:.:259:259:0:0%:143,116,0,0 -Example1_ref 8165 . G T . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:149,118,1,0 0/0:.:268:267:1:0.37%:149,118,1,0 -Example1_ref 8166 . A C . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:265:1:0.38%:152,113,1,0 0/0:.:266:265:1:0.38%:152,113,1,0 -Example1_ref 8167 . T G . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:157,118,0,1 0/0:.:276:275:1:0.36%:157,118,0,1 -Example1_ref 8168 . G GTCTCT . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:274:1:0.36%:155,119,1,0 0/0:.:276:274:1:0.36%:155,119,1,0 -Example1_ref 8169 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:0:0%:156,117,0,0 0/0:.:274:273:0:0%:156,117,0,0 -Example1_ref 8170 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:157,120,0,0 0/0:.:277:277:0:0%:157,120,0,0 -Example1_ref 8171 . T C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:155,119,0,1 0/0:.:275:274:1:0.36%:155,119,0,1 -Example1_ref 8172 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:0:0%:155,121,0,0 0/0:.:277:276:0:0%:155,121,0,0 -Example1_ref 8173 . A G . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:153,125,0,1 0/0:.:279:278:1:0.36%:153,125,0,1 -Example1_ref 8174 . C . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:151,120,0,0 0/0:.:271:271:0:0%:151,120,0,0 -Example1_ref 8175 . G . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:151,117,0,0 0/0:.:268:268:0:0%:151,117,0,0 -Example1_ref 8176 . G T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=6.8822E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:258:2:0.77%:145,113,2,0 0/0:.:260:258:2:0.77%:145,113,2,0 -Example1_ref 8177 . G . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:144,119,0,0 0/0:.:263:263:0:0%:144,119,0,0 -Example1_ref 8178 . A G . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:154,119,1,0 0/0:.:274:273:1:0.36%:154,119,1,0 -Example1_ref 8179 . G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:159,122,0,0 0/0:.:281:281:0:0%:159,122,0,0 -Example1_ref 8180 . T . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:160,122,0,0 0/0:.:282:282:0:0%:160,122,0,0 -Example1_ref 8181 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:161,131,0,0 0/0:.:292:292:0:0%:161,131,0,0 -Example1_ref 8182 . T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:164,130,0,0 0/0:.:294:294:0:0%:164,130,0,0 -Example1_ref 8183 . A G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:168,137,1,0 0/0:.:306:305:1:0.33%:168,137,1,0 -Example1_ref 8184 . TA T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:163,141,1,0 0/0:.:305:304:1:0.33%:163,141,1,0 -Example1_ref 8185 . A ACCTGT . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=6.8812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:300:2:0.66%:158,142,2,0 0/0:.:305:300:2:0.66%:158,142,2,0 -Example1_ref 8186 . C . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:158,145,0,0 0/0:.:303:303:0:0%:158,145,0,0 -Example1_ref 8187 . T A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=6.8815E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:286:2:0.69%:153,133,0,2 0/0:.:289:286:2:0.69%:153,133,0,2 -Example1_ref 8188 . G GTCTCTT . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:283:1:0.35%:152,131,1,0 0/0:.:285:283:1:0.35%:152,131,1,0 -Example1_ref 8189 . A C . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:159,129,1,0 0/0:.:289:288:1:0.35%:159,129,1,0 -Example1_ref 8190 . T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:163,131,0,0 0/0:.:294:294:0:0%:163,131,0,0 -Example1_ref 8191 . G A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=6.8815E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:288:2:0.69%:158,130,2,0 0/0:.:290:288:2:0.69%:158,130,2,0 -Example1_ref 8192 . C CTGTCT . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:160,129,1,0 0/0:.:290:289:1:0.34%:160,129,1,0 -Example1_ref 8193 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:160,133,0,0 0/0:.:293:293:0:0%:160,133,0,0 -Example1_ref 8194 . T A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:287:1:0.35%:156,131,0,1 0/0:.:289:287:1:0.35%:156,131,0,1 -Example1_ref 8195 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:153,132,0,0 0/0:.:285:285:0:0%:153,132,0,0 -Example1_ref 8196 . T . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:151,128,0,0 0/0:.:279:279:0:0%:151,128,0,0 -Example1_ref 8197 . C A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:282:1:0.35%:152,130,1,0 0/0:.:284:282:1:0.35%:152,130,1,0 -Example1_ref 8198 . C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:150,124,0,0 0/0:.:274:274:0:0%:150,124,0,0 -Example1_ref 8199 . G GAAACAAAACA . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:142,127,1,0 0/0:.:270:269:1:0.37%:142,127,1,0 -Example1_ref 8200 . C . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:141,125,0,0 0/0:.:266:266:0:0%:141,125,0,0 -Example1_ref 8201 . T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:138,129,0,0 0/0:.:267:267:0:0%:138,129,0,0 -Example1_ref 8202 . C . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:141,123,0,0 0/0:.:264:264:0:0%:141,123,0,0 -Example1_ref 8203 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:141,132,0,0 0/0:.:273:273:0:0%:141,132,0,0 -Example1_ref 8204 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:143,137,0,0 0/0:.:280:280:0:0%:143,137,0,0 -Example1_ref 8205 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:144,131,0,0 0/0:.:275:275:0:0%:144,131,0,0 -Example1_ref 8206 . C . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:144,133,0,0 0/0:.:277:277:0:0%:144,133,0,0 -Example1_ref 8207 . C . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:141,136,0,0 0/0:.:277:277:0:0%:141,136,0,0 -Example1_ref 8208 . C T . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=6.1407E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:263:6:2.23%:138,125,2,4 0/0:.:269:263:6:2.23%:138,125,2,4 -Example1_ref 8209 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:143,139,0,0 0/0:.:282:282:0:0%:143,139,0,0 -Example1_ref 8210 . C A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:1:0.35%:141,140,0,1 0/0:.:282:281:1:0.35%:141,140,0,1 -Example1_ref 8211 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:138,142,0,0 0/0:.:280:280:0:0%:138,142,0,0 -Example1_ref 8212 . G . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:135,142,0,0 0/0:.:277:277:0:0%:135,142,0,0 -Example1_ref 8213 . G . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:135,134,0,0 0/0:.:269:269:0:0%:135,134,0,0 -Example1_ref 8214 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:130,134,0,0 0/0:.:264:264:0:0%:130,134,0,0 -Example1_ref 8215 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:132,134,0,0 0/0:.:266:266:0:0%:132,134,0,0 -Example1_ref 8216 . G T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:134,136,1,0 0/0:.:271:270:1:0.37%:134,136,1,0 -Example1_ref 8217 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:137,136,0,0 0/0:.:273:273:0:0%:137,136,0,0 -Example1_ref 8218 . AT A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:139,137,1,0 0/0:.:277:276:1:0.36%:139,137,1,0 -Example1_ref 8219 . T G . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:140,136,0,1 0/0:.:277:276:1:0.36%:140,136,0,1 -Example1_ref 8220 . T . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:137,136,0,0 0/0:.:273:273:0:0%:137,136,0,0 -Example1_ref 8221 . G . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:139,137,0,0 0/0:.:276:276:0:0%:139,137,0,0 -Example1_ref 8222 . T C . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:144,134,0,1 0/0:.:279:278:1:0.36%:144,134,0,1 -Example1_ref 8223 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:144,134,0,0 0/0:.:278:278:0:0%:144,134,0,0 -Example1_ref 8224 . T . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:143,130,0,0 0/0:.:273:273:0:0%:143,130,0,0 -Example1_ref 8225 . C . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:147,130,0,0 0/0:.:277:277:0:0%:147,130,0,0 -Example1_ref 8226 . A T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:144,129,0,1 0/0:.:274:273:1:0.36%:144,129,0,1 -Example1_ref 8227 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:143,129,0,0 0/0:.:272:272:0:0%:143,129,0,0 -Example1_ref 8228 . C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:146,128,0,0 0/0:.:274:274:0:0%:146,128,0,0 -Example1_ref 8229 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:145,127,0,0 0/0:.:272:272:0:0%:145,127,0,0 -Example1_ref 8230 . G . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:148,125,0,0 0/0:.:273:273:0:0%:148,125,0,0 -Example1_ref 8231 . T . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:149,124,0,0 0/0:.:273:273:0:0%:149,124,0,0 -Example1_ref 8232 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:148,127,0,0 0/0:.:275:275:0:0%:148,127,0,0 -Example1_ref 8233 . A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:153,128,0,0 0/0:.:281:281:0:0%:153,128,0,0 -Example1_ref 8234 . T . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:151,125,0,0 0/0:.:276:276:0:0%:151,125,0,0 -Example1_ref 8235 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:154,128,0,0 0/0:.:282:282:0:0%:154,128,0,0 -Example1_ref 8236 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:152,126,0,0 0/0:.:278:278:0:0%:152,126,0,0 -Example1_ref 8237 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:153,127,0,0 0/0:.:280:280:0:0%:153,127,0,0 -Example1_ref 8238 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:151,126,0,0 0/0:.:277:277:0:0%:151,126,0,0 -Example1_ref 8239 . G A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:143,123,0,1 0/0:.:267:266:1:0.37%:143,123,0,1 -Example1_ref 8240 . A AC . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:146,122,1,0 0/0:.:269:268:1:0.37%:146,122,1,0 -Example1_ref 8241 . C . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:144,122,0,0 0/0:.:266:266:0:0%:144,122,0,0 -Example1_ref 8242 . T . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:150,120,0,0 0/0:.:270:270:0:0%:150,120,0,0 -Example1_ref 8243 . C A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:149,120,1,0 0/0:.:270:269:1:0.37%:149,120,1,0 -Example1_ref 8244 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:146,124,0,0 0/0:.:270:270:0:0%:146,124,0,0 -Example1_ref 8245 . C . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:149,121,0,0 0/0:.:270:270:0:0%:149,121,0,0 -Example1_ref 8246 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:147,128,0,0 0/0:.:275:275:0:0%:147,128,0,0 -Example1_ref 8247 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:141,127,0,0 0/0:.:268:268:0:0%:141,127,0,0 -Example1_ref 8248 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:141,126,0,0 0/0:.:267:267:0:0%:141,126,0,0 -Example1_ref 8249 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:143,126,0,0 0/0:.:269:269:0:0%:143,126,0,0 -Example1_ref 8250 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:146,125,0,0 0/0:.:271:271:0:0%:146,125,0,0 -Example1_ref 8251 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:147,124,0,0 0/0:.:271:271:0:0%:147,124,0,0 -Example1_ref 8252 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:146,129,0,0 0/0:.:275:275:0:0%:146,129,0,0 -Example1_ref 8253 . G . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:144,128,0,0 0/0:.:272:272:0:0%:144,128,0,0 -Example1_ref 8254 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:142,127,0,0 0/0:.:269:269:0:0%:142,127,0,0 -Example1_ref 8255 . G . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:140,130,0,0 0/0:.:270:270:0:0%:140,130,0,0 -Example1_ref 8256 . A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:143,131,0,0 0/0:.:274:274:0:0%:143,131,0,0 -Example1_ref 8257 . G . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:142,131,0,0 0/0:.:273:273:0:0%:142,131,0,0 -Example1_ref 8258 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:144,128,0,0 0/0:.:272:272:0:0%:144,128,0,0 -Example1_ref 8259 . C . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:146,130,0,0 0/0:.:276:276:0:0%:146,130,0,0 -Example1_ref 8260 . A T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:143,133,1,0 0/0:.:277:276:1:0.36%:143,133,1,0 -Example1_ref 8261 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:145,134,0,0 0/0:.:279:279:0:0%:145,134,0,0 -Example1_ref 8262 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:145,130,0,0 0/0:.:275:275:0:0%:145,130,0,0 -Example1_ref 8263 . C . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:141,130,0,0 0/0:.:271:271:0:0%:141,130,0,0 -Example1_ref 8264 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:140,135,0,0 0/0:.:275:275:0:0%:140,135,0,0 -Example1_ref 8265 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:139,134,0,0 0/0:.:273:273:0:0%:139,134,0,0 -Example1_ref 8266 . G . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:139,133,0,0 0/0:.:272:272:0:0%:139,133,0,0 -Example1_ref 8267 . T C . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:144,131,1,0 0/0:.:276:275:1:0.36%:144,131,1,0 -Example1_ref 8268 . C . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:137,132,0,0 0/0:.:269:269:0:0%:137,132,0,0 -Example1_ref 8269 . A G . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:140,134,1,0 0/0:.:275:274:1:0.36%:140,134,1,0 -Example1_ref 8270 . T C . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:136,130,0,1 0/0:.:267:266:1:0.37%:136,130,0,1 -Example1_ref 8271 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:134,130,0,0 0/0:.:264:264:0:0%:134,130,0,0 -Example1_ref 8272 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:136,134,0,0 0/0:.:270:270:0:0%:136,134,0,0 -Example1_ref 8273 . C . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:139,133,0,0 0/0:.:272:272:0:0%:139,133,0,0 -Example1_ref 8274 . T A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:137,132,0,1 0/0:.:270:269:1:0.37%:137,132,0,1 -Example1_ref 8275 . T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:139,128,0,0 0/0:.:267:267:0:0%:139,128,0,0 -Example1_ref 8276 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:137,132,0,0 0/0:.:269:269:0:0%:137,132,0,0 -Example1_ref 8277 . C T . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:138,130,0,1 0/0:.:269:268:1:0.37%:138,130,0,1 -Example1_ref 8278 . T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:135,128,0,0 0/0:.:263:263:0:0%:135,128,0,0 -Example1_ref 8279 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:131,131,0,0 0/0:.:262:262:0:0%:131,131,0,0 -Example1_ref 8280 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:135,133,0,0 0/0:.:268:268:0:0%:135,133,0,0 -Example1_ref 8281 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:134,133,0,0 0/0:.:267:267:0:0%:134,133,0,0 -Example1_ref 8282 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:130,132,0,0 0/0:.:262:262:0:0%:130,132,0,0 -Example1_ref 8283 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:132,132,0,0 0/0:.:264:264:0:0%:132,132,0,0 -Example1_ref 8284 . G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:127,133,0,0 0/0:.:260:260:0:0%:127,133,0,0 -Example1_ref 8285 . C . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:129,131,0,0 0/0:.:260:260:0:0%:129,131,0,0 -Example1_ref 8286 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:128,131,0,0 0/0:.:259:259:0:0%:128,131,0,0 -Example1_ref 8287 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:126,135,0,0 0/0:.:261:261:0:0%:126,135,0,0 -Example1_ref 8288 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:128,130,0,0 0/0:.:258:258:0:0%:128,130,0,0 -Example1_ref 8289 . C T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:126,135,1,0 0/0:.:262:261:1:0.38%:126,135,1,0 -Example1_ref 8290 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:128,134,0,0 0/0:.:262:262:0:0%:128,134,0,0 -Example1_ref 8291 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:123,134,0,0 0/0:.:257:257:0:0%:123,134,0,0 -Example1_ref 8292 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:123,136,0,0 0/0:.:259:259:0:0%:123,136,0,0 -Example1_ref 8293 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:122,132,0,0 0/0:.:254:254:0:0%:122,132,0,0 -Example1_ref 8294 . G . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:126,132,0,0 0/0:.:258:258:0:0%:126,132,0,0 -Example1_ref 8295 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:117,130,0,0 0/0:.:247:247:0:0%:117,130,0,0 -Example1_ref 8296 . G . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:251:251:0:0%:119,132,0,0 -Example1_ref 8297 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:128,130,0,0 0/0:.:258:258:0:0%:128,130,0,0 -Example1_ref 8298 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:128,131,0,0 0/0:.:259:259:0:0%:128,131,0,0 -Example1_ref 8299 . A T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:125,136,0,1 0/0:.:262:261:1:0.38%:125,136,0,1 -Example1_ref 8300 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:123,137,0,0 0/0:.:260:260:0:0%:123,137,0,0 -Example1_ref 8301 . C . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:125,136,0,0 0/0:.:261:261:0:0%:125,136,0,0 -Example1_ref 8302 . G . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:123,135,0,0 0/0:.:258:258:0:0%:123,135,0,0 -Example1_ref 8303 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:124,134,0,0 0/0:.:258:258:0:0%:124,134,0,0 -Example1_ref 8304 . G . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:114,135,0,0 0/0:.:249:249:0:0%:114,135,0,0 -Example1_ref 8305 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:121,132,0,0 0/0:.:253:253:0:0%:121,132,0,0 -Example1_ref 8306 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:251:251:0:0%:119,132,0,0 -Example1_ref 8307 . G . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:118,136,0,0 0/0:.:254:254:0:0%:118,136,0,0 -Example1_ref 8308 . G A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:1:0.38%:120,143,0,1 0/0:.:264:263:1:0.38%:120,143,0,1 -Example1_ref 8309 . C . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:123,144,0,0 0/0:.:267:267:0:0%:123,144,0,0 -Example1_ref 8310 . T C . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:121,141,0,1 0/0:.:263:262:1:0.38%:121,141,0,1 -Example1_ref 8311 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:124,146,0,0 0/0:.:270:270:0:0%:124,146,0,0 -Example1_ref 8312 . T A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:120,142,1,0 0/0:.:263:262:1:0.38%:120,142,1,0 -Example1_ref 8313 . C . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:120,140,0,0 0/0:.:260:260:0:0%:120,140,0,0 -Example1_ref 8314 . C . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:122,143,0,0 0/0:.:265:265:0:0%:122,143,0,0 -Example1_ref 8315 . G . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:120,143,0,0 0/0:.:263:263:0:0%:120,143,0,0 -Example1_ref 8316 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:120,147,0,0 0/0:.:267:267:0:0%:120,147,0,0 -Example1_ref 8317 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:118,146,0,0 0/0:.:264:264:0:0%:118,146,0,0 -Example1_ref 8318 . A G . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:122,146,1,0 0/0:.:269:268:1:0.37%:122,146,1,0 -Example1_ref 8319 . C A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:123,143,0,1 0/0:.:267:266:1:0.37%:123,143,0,1 -Example1_ref 8320 . A G . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:122,148,1,0 0/0:.:271:270:1:0.37%:122,148,1,0 -Example1_ref 8321 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:123,148,0,0 0/0:.:271:271:0:0%:123,148,0,0 -Example1_ref 8322 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:120,147,0,0 0/0:.:267:267:0:0%:120,147,0,0 -Example1_ref 8323 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:119,150,0,0 0/0:.:269:269:0:0%:119,150,0,0 -Example1_ref 8324 . C . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:121,151,0,0 0/0:.:272:272:0:0%:121,151,0,0 -Example1_ref 8325 . A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:124,150,0,0 0/0:.:274:274:0:0%:124,150,0,0 -Example1_ref 8326 . C A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:123,146,0,1 0/0:.:270:269:1:0.37%:123,146,0,1 -Example1_ref 8327 . T . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:123,150,0,0 0/0:.:273:273:0:0%:123,150,0,0 -Example1_ref 8328 . C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:124,150,0,0 0/0:.:274:274:0:0%:124,150,0,0 -Example1_ref 8329 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:113,148,0,0 0/0:.:261:261:0:0%:113,148,0,0 -Example1_ref 8330 . C . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:120,150,0,0 0/0:.:270:270:0:0%:120,150,0,0 -Example1_ref 8331 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:121,149,0,0 0/0:.:270:270:0:0%:121,149,0,0 -Example1_ref 8332 . G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:117,150,0,0 0/0:.:267:267:0:0%:117,150,0,0 -Example1_ref 8333 . C . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:118,150,0,0 0/0:.:268:268:0:0%:118,150,0,0 -Example1_ref 8334 . T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:118,148,0,0 0/0:.:266:266:0:0%:118,148,0,0 -Example1_ref 8335 . G A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:257:1:0.39%:119,138,0,1 0/0:.:259:257:1:0.39%:119,138,0,1 -Example1_ref 8336 . G A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=6.8825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:250:2:0.79%:108,142,1,1 0/0:.:252:250:2:0.79%:108,142,1,1 -Example1_ref 8337 . G . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:264:0:0%:118,146,0,0 0/0:.:265:264:0:0%:118,146,0,0 -Example1_ref 8338 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:126,146,0,0 0/0:.:272:272:0:0%:126,146,0,0 -Example1_ref 8339 . ATAC A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:272:1:0.37%:125,147,0,1 0/0:.:273:272:1:0.37%:125,147,0,1 -Example1_ref 8340 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:0:0%:124,146,0,0 0/0:.:271:270:0:0%:124,146,0,0 -Example1_ref 8341 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:0:0%:121,145,0,0 0/0:.:267:266:0:0%:121,145,0,0 -Example1_ref 8342 . C . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:0:0%:120,143,0,0 0/0:.:264:263:0:0%:120,143,0,0 -Example1_ref 8343 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:119,139,0,0 0/0:.:258:258:0:0%:119,139,0,0 -Example1_ref 8344 . A T . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:1:0.38%:120,143,0,1 0/0:.:264:263:1:0.38%:120,143,0,1 -Example1_ref 8345 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:0:0%:118,143,0,0 0/0:.:262:261:0:0%:118,143,0,0 -Example1_ref 8346 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:116,137,0,0 0/0:.:253:253:0:0%:116,137,0,0 -Example1_ref 8347 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:114,137,0,0 0/0:.:251:251:0:0%:114,137,0,0 -Example1_ref 8348 . C . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:115,134,0,0 0/0:.:249:249:0:0%:115,134,0,0 -Example1_ref 8349 . A C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:116,135,1,0 0/0:.:252:251:1:0.4%:116,135,1,0 -Example1_ref 8350 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:114,134,0,0 0/0:.:248:248:0:0%:114,134,0,0 -Example1_ref 8351 . G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:108,125,0,0 0/0:.:233:233:0:0%:108,125,0,0 -Example1_ref 8352 . C T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=6.883E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:233:2:0.85%:111,122,2,0 0/0:.:235:233:2:0.85%:111,122,2,0 -Example1_ref 8353 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:114,124,0,0 0/0:.:238:238:0:0%:114,124,0,0 -Example1_ref 8354 . G A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:105,121,0,1 0/0:.:227:226:1:0.44%:105,121,0,1 -Example1_ref 8355 . C A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:111,125,0,1 0/0:.:237:236:1:0.42%:111,125,0,1 -Example1_ref 8356 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:110,125,0,0 0/0:.:235:235:0:0%:110,125,0,0 -Example1_ref 8357 . T G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:1:0.44%:106,122,1,0 0/0:.:229:228:1:0.44%:106,122,1,0 -Example1_ref 8358 . TAC T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:104,121,1,0 0/0:.:226:225:1:0.44%:104,121,1,0 -Example1_ref 8359 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:0:0%:107,124,0,0 0/0:.:232:231:0:0%:107,124,0,0 -Example1_ref 8360 . C A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:104,120,1,0 0/0:.:226:224:1:0.44%:104,120,1,0 -Example1_ref 8361 . A ACCTTTC . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:227:1:0.44%:105,122,1,0 0/0:.:229:227:1:0.44%:105,122,1,0 -Example1_ref 8362 . C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:0:0%:105,116,0,0 0/0:.:222:221:0:0%:105,116,0,0 -Example1_ref 8363 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:0:0%:104,115,0,0 0/0:.:220:219:0:0%:104,115,0,0 -Example1_ref 8364 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:113,117,0,0 0/0:.:230:230:0:0%:113,117,0,0 -Example1_ref 8365 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:110,113,0,0 0/0:.:223:223:0:0%:110,113,0,0 -Example1_ref 8366 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:111,114,0,0 0/0:.:225:225:0:0%:111,114,0,0 -Example1_ref 8367 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:105,115,0,0 0/0:.:220:220:0:0%:105,115,0,0 -Example1_ref 8368 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:0:0%:99,111,0,0 0/0:.:211:210:0:0%:99,111,0,0 -Example1_ref 8369 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:98,115,0,0 0/0:.:213:213:0:0%:98,115,0,0 -Example1_ref 8370 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:90,115,0,0 0/0:.:205:205:0:0%:90,115,0,0 -Example1_ref 8371 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:91,101,0,0 0/0:.:192:192:0:0%:91,101,0,0 -Example1_ref 8372 . A ACTGTC . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:87,105,1,0 0/0:.:193:192:1:0.52%:87,105,1,0 -Example1_ref 8373 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:86,89,0,0 0/0:.:175:175:0:0%:86,89,0,0 -Example1_ref 8374 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:0:0%:79,87,0,0 0/0:.:167:166:0:0%:79,87,0,0 -Example1_ref 8375 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:76,84,0,0 0/0:.:160:160:0:0%:76,84,0,0 -Example1_ref 8376 . A G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:81,85,0,1 0/0:.:167:166:1:0.6%:81,85,0,1 -Example1_ref 8377 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:78,88,0,0 0/0:.:166:166:0:0%:78,88,0,0 -Example1_ref 8378 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:82,85,0,0 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 8379 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:78,84,0,0 0/0:.:162:162:0:0%:78,84,0,0 -Example1_ref 8380 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:79,84,0,0 0/0:.:163:163:0:0%:79,84,0,0 -Example1_ref 8381 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:80,85,0,0 0/0:.:165:165:0:0%:80,85,0,0 -Example1_ref 8382 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:80,85,0,0 0/0:.:166:165:0:0%:80,85,0,0 -Example1_ref 8383 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:78,82,0,0 0/0:.:160:160:0:0%:78,82,0,0 -Example1_ref 8384 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:80,82,0,0 0/0:.:162:162:0:0%:80,82,0,0 -Example1_ref 8385 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:79,85,0,0 0/0:.:164:164:0:0%:79,85,0,0 -Example1_ref 8386 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:74,82,0,0 0/0:.:156:156:0:0%:74,82,0,0 -Example1_ref 8387 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:77,83,0,0 0/0:.:160:160:0:0%:77,83,0,0 -Example1_ref 8388 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:79,83,0,0 0/0:.:162:162:0:0%:79,83,0,0 -Example1_ref 8389 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:78,84,0,0 0/0:.:162:162:0:0%:78,84,0,0 -Example1_ref 8390 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:77,82,0,0 0/0:.:159:159:0:0%:77,82,0,0 -Example1_ref 8391 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:74,80,0,0 0/0:.:154:154:0:0%:74,80,0,0 -Example1_ref 8392 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:73,78,0,0 0/0:.:151:151:0:0%:73,78,0,0 -Example1_ref 8393 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:78,79,0,0 0/0:.:157:157:0:0%:78,79,0,0 -Example1_ref 8394 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 8395 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:76,77,0,0 0/0:.:153:153:0:0%:76,77,0,0 -Example1_ref 8396 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:76,77,0,0 0/0:.:153:153:0:0%:76,77,0,0 -Example1_ref 8397 . A T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:75,77,1,0 0/0:.:153:152:1:0.65%:75,77,1,0 -Example1_ref 8398 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:76,78,0,0 0/0:.:154:154:0:0%:76,78,0,0 -Example1_ref 8399 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:77,75,0,0 0/0:.:152:152:0:0%:77,75,0,0 -Example1_ref 8400 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:75,76,0,0 0/0:.:151:151:0:0%:75,76,0,0 -Example1_ref 8401 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:76,74,0,0 0/0:.:150:150:0:0%:76,74,0,0 -Example1_ref 8402 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:73,75,0,0 0/0:.:148:148:0:0%:73,75,0,0 -Example1_ref 8403 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:0:0%:72,71,0,0 0/0:.:144:143:0:0%:72,71,0,0 -Example1_ref 8404 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:67,71,0,0 0/0:.:138:138:0:0%:67,71,0,0 -Example1_ref 8405 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:73,72,0,0 0/0:.:145:145:0:0%:73,72,0,0 -Example1_ref 8406 . TAA T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:69,72,1,0 0/0:.:142:141:1:0.7%:69,72,1,0 -Example1_ref 8407 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:69,73,0,0 0/0:.:142:142:0:0%:69,73,0,0 -Example1_ref 8408 . A T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:67,74,1,0 0/0:.:142:141:1:0.7%:67,74,1,0 -Example1_ref 8409 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:68,71,0,0 0/0:.:139:139:0:0%:68,71,0,0 -Example1_ref 8410 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:67,72,0,0 0/0:.:139:139:0:0%:67,72,0,0 -Example1_ref 8411 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:64,72,0,0 0/0:.:136:136:0:0%:64,72,0,0 -Example1_ref 8412 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:66,69,0,0 0/0:.:135:135:0:0%:66,69,0,0 -Example1_ref 8413 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:64,70,0,0 0/0:.:134:134:0:0%:64,70,0,0 -Example1_ref 8414 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:67,66,0,0 0/0:.:133:133:0:0%:67,66,0,0 -Example1_ref 8415 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:66,70,0,0 0/0:.:136:136:0:0%:66,70,0,0 -Example1_ref 8416 . A G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:63,68,1,0 0/0:.:132:131:1:0.76%:63,68,1,0 -Example1_ref 8417 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:66,69,0,0 0/0:.:135:135:0:0%:66,69,0,0 -Example1_ref 8418 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:62,70,0,0 0/0:.:132:132:0:0%:62,70,0,0 -Example1_ref 8419 . A AG . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:62,71,0,1 0/0:.:134:133:1:0.75%:62,71,0,1 -Example1_ref 8420 . C T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:58,68,1,0 0/0:.:127:126:1:0.79%:58,68,1,0 -Example1_ref 8421 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:58,68,0,0 0/0:.:126:126:0:0%:58,68,0,0 -Example1_ref 8422 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:59,65,0,0 0/0:.:124:124:0:0%:59,65,0,0 -Example1_ref 8423 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:55,64,0,0 0/0:.:119:119:0:0%:55,64,0,0 -Example1_ref 8424 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:56,64,0,0 0/0:.:120:120:0:0%:56,64,0,0 -Example1_ref 8425 . C T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:53,66,0,1 0/0:.:120:119:1:0.83%:53,66,0,1 -Example1_ref 8426 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:51,67,0,0 0/0:.:118:118:0:0%:51,67,0,0 -Example1_ref 8427 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:53,69,0,0 0/0:.:122:122:0:0%:53,69,0,0 -Example1_ref 8428 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:52,67,0,0 0/0:.:119:119:0:0%:52,67,0,0 -Example1_ref 8429 . C A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:52,66,1,0 0/0:.:119:118:1:0.84%:52,66,1,0 -Example1_ref 8430 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:54,66,0,0 0/0:.:120:120:0:0%:54,66,0,0 -Example1_ref 8431 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:52,66,0,0 0/0:.:118:118:0:0%:52,66,0,0 -Example1_ref 8432 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:51,67,0,0 0/0:.:118:118:0:0%:51,67,0,0 -Example1_ref 8433 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:49,65,0,0 0/0:.:114:114:0:0%:49,65,0,0 -Example1_ref 8434 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:53,66,0,0 0/0:.:119:119:0:0%:53,66,0,0 -Example1_ref 8435 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:115:115:0:0%:53,62,0,0 -Example1_ref 8436 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:49,60,0,0 0/0:.:109:109:0:0%:49,60,0,0 -Example1_ref 8437 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:114:114:0:0%:52,62,0,0 -Example1_ref 8438 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:50,61,0,0 0/0:.:111:111:0:0%:50,61,0,0 -Example1_ref 8439 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 8440 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:51,62,0,0 0/0:.:113:113:0:0%:51,62,0,0 -Example1_ref 8441 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:108:108:0:0%:48,60,0,0 -Example1_ref 8442 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:114:114:0:0%:52,62,0,0 -Example1_ref 8443 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:114:114:0:0%:52,62,0,0 -Example1_ref 8444 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 8445 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:111:111:0:0%:52,59,0,0 -Example1_ref 8446 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:105:105:0:0%:48,57,0,0 -Example1_ref 8447 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:48,58,0,0 0/0:.:106:106:0:0%:48,58,0,0 -Example1_ref 8448 . G T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:50,58,1,0 0/0:.:109:108:1:0.92%:50,58,1,0 -Example1_ref 8449 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 8450 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 8451 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:107:107:0:0%:51,56,0,0 -Example1_ref 8452 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:52,58,0,0 0/0:.:110:110:0:0%:52,58,0,0 -Example1_ref 8453 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:111:111:0:0%:52,59,0,0 -Example1_ref 8454 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:115:115:0:0%:53,62,0,0 -Example1_ref 8455 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:51,62,0,0 0/0:.:113:113:0:0%:51,62,0,0 -Example1_ref 8456 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:49,62,0,0 0/0:.:111:111:0:0%:49,62,0,0 -Example1_ref 8457 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:47,59,0,0 0/0:.:106:106:0:0%:47,59,0,0 -Example1_ref 8458 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:47,60,0,0 0/0:.:107:107:0:0%:47,60,0,0 -Example1_ref 8459 . G T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.5121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:44,59,1,0 0/0:.:104:103:1:0.96%:44,59,1,0 -Example1_ref 8460 . C A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=7.5117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:48,58,0,1 0/0:.:107:106:1:0.93%:48,58,0,1 -Example1_ref 8461 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:49,57,0,0 0/0:.:106:106:0:0%:49,57,0,0 -Example1_ref 8462 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:46,59,0,0 0/0:.:105:105:0:0%:46,59,0,0 -Example1_ref 8463 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:44,58,0,0 0/0:.:102:102:0:0%:44,58,0,0 -Example1_ref 8464 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 8465 . G T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.5121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:44,59,1,0 0/0:.:104:103:1:0.96%:44,59,1,0 -Example1_ref 8466 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:108:108:0:0%:48,60,0,0 -Example1_ref 8467 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:48,58,0,0 0/0:.:106:106:0:0%:48,58,0,0 -Example1_ref 8468 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 8469 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:47,59,0,0 0/0:.:106:106:0:0%:47,59,0,0 -Example1_ref 8470 . T C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:49,59,1,0 0/0:.:109:108:1:0.92%:49,59,1,0 -Example1_ref 8471 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:49,59,0,0 0/0:.:108:108:0:0%:49,59,0,0 -Example1_ref 8472 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:48,59,0,0 0/0:.:107:107:0:0%:48,59,0,0 -Example1_ref 8473 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 8474 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 8475 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 8476 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:105:105:0:0%:49,56,0,0 -Example1_ref 8477 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:49,54,0,0 0/0:.:103:103:0:0%:49,54,0,0 -Example1_ref 8478 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:47,54,0,0 0/0:.:101:101:0:0%:47,54,0,0 -Example1_ref 8479 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:49,53,0,0 0/0:.:102:102:0:0%:49,53,0,0 -Example1_ref 8480 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:52,52,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 8481 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:104:104:0:0%:49,55,0,0 -Example1_ref 8482 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:109:109:0:0%:52,57,0,0 -Example1_ref 8483 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 8484 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 8485 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:109:109:0:0%:52,57,0,0 -Example1_ref 8486 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:54,55,0,0 0/0:.:109:109:0:0%:54,55,0,0 -Example1_ref 8487 . A AC . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:53,57,1,0 0/0:.:111:110:1:0.9%:53,57,1,0 -Example1_ref 8488 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:53,55,0,0 0/0:.:108:108:0:0%:53,55,0,0 -Example1_ref 8489 . G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:58,48,0,0 0/0:.:106:106:0:0%:58,48,0,0 -Example1_ref 8490 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:60,49,0,0 0/0:.:109:109:0:0%:60,49,0,0 -Example1_ref 8491 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:57,48,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 8492 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:107:107:0:0%:59,48,0,0 -Example1_ref 8493 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:58,45,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 8494 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 8495 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:57,47,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 8496 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:60,44,0,0 0/0:.:104:104:0:0%:60,44,0,0 -Example1_ref 8497 . T A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=7.5118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:60,45,0,1 0/0:.:106:105:1:0.94%:60,45,0,1 -Example1_ref 8498 . T G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=7.5131E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:1:1.04%:60,35,0,1 0/0:.:96:95:1:1.04%:60,35,0,1 -Example1_ref 8499 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:63,36,0,0 0/0:.:99:99:0:0%:63,36,0,0 -Example1_ref 8500 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:63,37,0,0 0/0:.:100:100:0:0%:63,37,0,0 -Example1_ref 8501 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:64,36,0,0 0/0:.:100:100:0:0%:64,36,0,0 -Example1_ref 8502 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:65,39,0,0 0/0:.:104:104:0:0%:65,39,0,0 -Example1_ref 8503 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:66,40,0,0 0/0:.:106:106:0:0%:66,40,0,0 -Example1_ref 8504 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:68,39,0,0 0/0:.:107:107:0:0%:68,39,0,0 -Example1_ref 8505 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:67,37,0,0 0/0:.:104:104:0:0%:67,37,0,0 -Example1_ref 8506 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:68,38,0,0 0/0:.:106:106:0:0%:68,38,0,0 -Example1_ref 8507 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:69,38,0,0 0/0:.:107:107:0:0%:69,38,0,0 -Example1_ref 8508 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:67,39,0,0 0/0:.:106:106:0:0%:67,39,0,0 -Example1_ref 8509 . C A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=7.5118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:67,38,0,1 0/0:.:106:105:1:0.94%:67,38,0,1 -Example1_ref 8510 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:68,37,0,0 0/0:.:105:105:0:0%:68,37,0,0 -Example1_ref 8511 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:71,37,0,0 0/0:.:108:108:0:0%:71,37,0,0 -Example1_ref 8512 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:68,37,0,0 0/0:.:105:105:0:0%:68,37,0,0 -Example1_ref 8513 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:71,33,0,0 0/0:.:104:104:0:0%:71,33,0,0 -Example1_ref 8514 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:109:109:0:0%:73,36,0,0 -Example1_ref 8515 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:73,35,0,0 0/0:.:108:108:0:0%:73,35,0,0 -Example1_ref 8516 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:109:109:0:0%:73,36,0,0 -Example1_ref 8517 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:109:109:0:0%:73,36,0,0 -Example1_ref 8518 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:70,35,0,0 0/0:.:105:105:0:0%:70,35,0,0 -Example1_ref 8519 . A ATC . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:69,38,1,0 0/0:.:108:107:1:0.93%:69,38,1,0 -Example1_ref 8520 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:71,38,0,0 0/0:.:109:109:0:0%:71,38,0,0 -Example1_ref 8521 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:71,36,0,0 0/0:.:107:107:0:0%:71,36,0,0 -Example1_ref 8522 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:109:109:0:0%:73,36,0,0 -Example1_ref 8523 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:75,33,0,0 0/0:.:108:108:0:0%:75,33,0,0 -Example1_ref 8524 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:74,36,0,0 0/0:.:110:110:0:0%:74,36,0,0 -Example1_ref 8525 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:76,35,0,0 0/0:.:111:111:0:0%:76,35,0,0 -Example1_ref 8526 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:73,35,0,0 0/0:.:108:108:0:0%:73,35,0,0 -Example1_ref 8527 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:72,34,0,0 0/0:.:106:106:0:0%:72,34,0,0 -Example1_ref 8528 . C T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=7.512E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:104:1:0.95%:72,32,0,1 0/0:.:105:104:1:0.95%:72,32,0,1 -Example1_ref 8529 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:72,35,0,0 0/0:.:107:107:0:0%:72,35,0,0 -Example1_ref 8530 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:75,36,0,0 0/0:.:111:111:0:0%:75,36,0,0 -Example1_ref 8531 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:76,33,0,0 0/0:.:109:109:0:0%:76,33,0,0 -Example1_ref 8532 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:77,35,0,0 0/0:.:112:112:0:0%:77,35,0,0 -Example1_ref 8533 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:77,34,0,0 0/0:.:111:111:0:0%:77,34,0,0 -Example1_ref 8534 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:77,34,0,0 0/0:.:111:111:0:0%:77,34,0,0 -Example1_ref 8535 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:76,33,0,0 0/0:.:109:109:0:0%:76,33,0,0 -Example1_ref 8536 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:114:114:0:0%:78,36,0,0 -Example1_ref 8537 . G GCTGTCTCTTATAC . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:75,35,1,0 0/0:.:111:110:1:0.9%:75,35,1,0 -Example1_ref 8538 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:73,37,0,0 0/0:.:110:110:0:0%:73,37,0,0 -Example1_ref 8539 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:77,36,0,0 0/0:.:113:113:0:0%:77,36,0,0 -Example1_ref 8540 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:114:114:0:0%:78,36,0,0 -Example1_ref 8541 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:77,34,0,0 0/0:.:111:111:0:0%:77,34,0,0 -Example1_ref 8542 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:114:114:0:0%:78,36,0,0 -Example1_ref 8543 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:114:114:0:0%:78,36,0,0 -Example1_ref 8544 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:77,35,0,0 0/0:.:112:112:0:0%:77,35,0,0 -Example1_ref 8545 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:76,36,0,0 0/0:.:112:112:0:0%:76,36,0,0 -Example1_ref 8546 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:80,35,0,0 0/0:.:115:115:0:0%:80,35,0,0 -Example1_ref 8547 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:80,36,0,0 0/0:.:116:116:0:0%:80,36,0,0 -Example1_ref 8548 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:78,35,0,0 0/0:.:113:113:0:0%:78,35,0,0 -Example1_ref 8549 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:78,35,0,0 0/0:.:113:113:0:0%:78,35,0,0 -Example1_ref 8550 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:78,37,0,0 0/0:.:115:115:0:0%:78,37,0,0 -Example1_ref 8551 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:79,37,0,0 0/0:.:116:116:0:0%:79,37,0,0 -Example1_ref 8552 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:78,39,0,0 0/0:.:117:117:0:0%:78,39,0,0 -Example1_ref 8553 . G A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:72,35,0,1 0/0:.:108:107:1:0.93%:72,35,0,1 -Example1_ref 8554 . G T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=7.5114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:69,40,1,0 0/0:.:110:109:1:0.91%:69,40,1,0 -Example1_ref 8555 . A AC . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:69,38,0,1 0/0:.:108:107:1:0.93%:69,38,0,1 -Example1_ref 8556 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:71,40,0,0 0/0:.:111:111:0:0%:71,40,0,0 -Example1_ref 8557 . T G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:69,39,0,1 0/0:.:109:108:1:0.92%:69,39,0,1 -Example1_ref 8558 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:75,39,0,0 0/0:.:114:114:0:0%:75,39,0,0 -Example1_ref 8559 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:82,40,0,0 0/0:.:122:122:0:0%:82,40,0,0 -Example1_ref 8560 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:79,43,0,0 0/0:.:123:122:0:0%:79,43,0,0 -Example1_ref 8561 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:77,43,0,0 0/0:.:120:120:0:0%:77,43,0,0 -Example1_ref 8562 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:120:120:0:0%:78,42,0,0 -Example1_ref 8563 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:120:120:0:0%:78,42,0,0 -Example1_ref 8564 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:76,44,0,0 0/0:.:120:120:0:0%:76,44,0,0 -Example1_ref 8565 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:125:125:0:0%:80,45,0,0 -Example1_ref 8566 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:81,45,0,0 0/0:.:126:126:0:0%:81,45,0,0 -Example1_ref 8567 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:82,41,0,0 0/0:.:123:123:0:0%:82,41,0,0 -Example1_ref 8568 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:83,42,0,0 0/0:.:125:125:0:0%:83,42,0,0 -Example1_ref 8569 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:126:126:0:0%:82,44,0,0 -Example1_ref 8570 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:83,43,0,0 0/0:.:126:126:0:0%:83,43,0,0 -Example1_ref 8571 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:127:127:0:0%:83,44,0,0 -Example1_ref 8572 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:126:126:0:0%:82,44,0,0 -Example1_ref 8573 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:84,43,0,0 0/0:.:127:127:0:0%:84,43,0,0 -Example1_ref 8574 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:129:129:0:0%:86,43,0,0 -Example1_ref 8575 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:87,40,0,0 0/0:.:127:127:0:0%:87,40,0,0 -Example1_ref 8576 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:84,42,0,0 0/0:.:126:126:0:0%:84,42,0,0 -Example1_ref 8577 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:87,41,0,0 0/0:.:128:128:0:0%:87,41,0,0 -Example1_ref 8578 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:127:127:0:0%:83,44,0,0 -Example1_ref 8579 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:130:130:0:0%:87,43,0,0 -Example1_ref 8580 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:84,44,0,0 0/0:.:128:128:0:0%:84,44,0,0 -Example1_ref 8581 . T C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:88,44,1,0 0/0:.:133:132:1:0.75%:88,44,1,0 -Example1_ref 8582 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:84,44,0,0 0/0:.:128:128:0:0%:84,44,0,0 -Example1_ref 8583 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:87,42,0,0 0/0:.:129:129:0:0%:87,42,0,0 -Example1_ref 8584 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:89,44,0,0 0/0:.:133:133:0:0%:89,44,0,0 -Example1_ref 8585 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:88,42,0,0 0/0:.:130:130:0:0%:88,42,0,0 -Example1_ref 8586 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:129:129:0:0%:86,43,0,0 -Example1_ref 8587 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:88,46,0,0 0/0:.:134:134:0:0%:88,46,0,0 -Example1_ref 8588 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:92,46,0,0 0/0:.:138:138:0:0%:92,46,0,0 -Example1_ref 8589 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:91,45,0,0 0/0:.:136:136:0:0%:91,45,0,0 -Example1_ref 8590 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:91,45,0,0 0/0:.:136:136:0:0%:91,45,0,0 -Example1_ref 8591 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:90,46,0,0 0/0:.:136:136:0:0%:90,46,0,0 -Example1_ref 8592 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:91,45,0,0 0/0:.:136:136:0:0%:91,45,0,0 -Example1_ref 8593 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:89,42,0,0 0/0:.:131:131:0:0%:89,42,0,0 -Example1_ref 8594 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:85,44,0,0 0/0:.:129:129:0:0%:85,44,0,0 -Example1_ref 8595 . A T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:88,45,1,0 0/0:.:134:133:1:0.75%:88,45,1,0 -Example1_ref 8596 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:88,46,0,0 0/0:.:134:134:0:0%:88,46,0,0 -Example1_ref 8597 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:90,47,0,0 0/0:.:137:137:0:0%:90,47,0,0 -Example1_ref 8598 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:87,46,0,0 0/0:.:133:133:0:0%:87,46,0,0 -Example1_ref 8599 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:88,46,0,0 0/0:.:134:134:0:0%:88,46,0,0 -Example1_ref 8600 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:87,46,0,0 0/0:.:133:133:0:0%:87,46,0,0 -Example1_ref 8601 . A ACAG . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:87,45,0,1 0/0:.:133:132:1:0.75%:87,45,0,1 -Example1_ref 8602 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:90,48,0,0 0/0:.:138:138:0:0%:90,48,0,0 -Example1_ref 8603 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:88,47,0,0 0/0:.:135:135:0:0%:88,47,0,0 -Example1_ref 8604 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:92,46,0,0 0/0:.:138:138:0:0%:92,46,0,0 -Example1_ref 8605 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:90,47,0,0 0/0:.:137:137:0:0%:90,47,0,0 -Example1_ref 8606 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:93,45,0,0 0/0:.:138:138:0:0%:93,45,0,0 -Example1_ref 8607 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:93,46,0,0 0/0:.:139:139:0:0%:93,46,0,0 -Example1_ref 8608 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:91,46,0,0 0/0:.:137:137:0:0%:91,46,0,0 -Example1_ref 8609 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:93,47,0,0 0/0:.:140:140:0:0%:93,47,0,0 -Example1_ref 8610 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:91,49,0,0 0/0:.:140:140:0:0%:91,49,0,0 -Example1_ref 8611 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:93,49,0,0 0/0:.:142:142:0:0%:93,49,0,0 -Example1_ref 8612 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:90,47,0,0 0/0:.:137:137:0:0%:90,47,0,0 -Example1_ref 8613 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:86,51,0,0 0/0:.:137:137:0:0%:86,51,0,0 -Example1_ref 8614 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:91,49,0,0 0/0:.:140:140:0:0%:91,49,0,0 -Example1_ref 8615 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:145:145:0:0%:93,52,0,0 -Example1_ref 8616 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:92,52,0,0 0/0:.:144:144:0:0%:92,52,0,0 -Example1_ref 8617 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:145:145:0:0%:93,52,0,0 -Example1_ref 8618 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:98,52,0,0 0/0:.:150:150:0:0%:98,52,0,0 -Example1_ref 8619 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:100,53,0,0 0/0:.:153:153:0:0%:100,53,0,0 -Example1_ref 8620 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:103,54,0,0 0/0:.:157:157:0:0%:103,54,0,0 -Example1_ref 8621 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:102,56,0,0 0/0:.:158:158:0:0%:102,56,0,0 -Example1_ref 8622 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:159:159:0:0%:103,56,0,0 -Example1_ref 8623 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:160:160:0:0%:103,57,0,0 -Example1_ref 8624 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:99,57,0,0 0/0:.:156:156:0:0%:99,57,0,0 -Example1_ref 8625 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:100,57,0,0 0/0:.:157:157:0:0%:100,57,0,0 -Example1_ref 8626 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:102,55,0,0 0/0:.:157:157:0:0%:102,55,0,0 -Example1_ref 8627 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:101,58,0,0 0/0:.:159:159:0:0%:101,58,0,0 -Example1_ref 8628 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:101,59,0,0 0/0:.:160:160:0:0%:101,59,0,0 -Example1_ref 8629 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:107,58,0,0 0/0:.:165:165:0:0%:107,58,0,0 -Example1_ref 8630 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:106,58,0,0 0/0:.:164:164:0:0%:106,58,0,0 -Example1_ref 8631 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:109,57,0,0 0/0:.:166:166:0:0%:109,57,0,0 -Example1_ref 8632 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:107,56,0,0 0/0:.:163:163:0:0%:107,56,0,0 -Example1_ref 8633 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:109,59,0,0 0/0:.:168:168:0:0%:109,59,0,0 -Example1_ref 8634 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:111,59,0,0 0/0:.:170:170:0:0%:111,59,0,0 -Example1_ref 8635 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:110,56,0,0 0/0:.:166:166:0:0%:110,56,0,0 -Example1_ref 8636 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:111,53,0,0 0/0:.:164:164:0:0%:111,53,0,0 -Example1_ref 8637 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:114,56,0,0 0/0:.:170:170:0:0%:114,56,0,0 -Example1_ref 8638 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:110,55,0,0 0/0:.:165:165:0:0%:110,55,0,0 -Example1_ref 8639 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:109,55,0,0 0/0:.:164:164:0:0%:109,55,0,0 -Example1_ref 8640 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:108,56,0,0 0/0:.:164:164:0:0%:108,56,0,0 -Example1_ref 8641 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:102,60,0,0 0/0:.:162:162:0:0%:102,60,0,0 -Example1_ref 8642 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:0:0%:109,61,0,0 0/0:.:171:170:0:0%:109,61,0,0 -Example1_ref 8643 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:105,58,0,0 0/0:.:163:163:0:0%:105,58,0,0 -Example1_ref 8644 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:110,61,0,0 0/0:.:171:171:0:0%:110,61,0,0 -Example1_ref 8645 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:109,60,0,0 0/0:.:169:169:0:0%:109,60,0,0 -Example1_ref 8646 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:109,63,0,0 0/0:.:172:172:0:0%:109,63,0,0 -Example1_ref 8647 . C A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:110,55,0,1 0/0:.:166:165:1:0.6%:110,55,0,1 -Example1_ref 8648 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:109,61,0,0 0/0:.:170:170:0:0%:109,61,0,0 -Example1_ref 8649 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:112,63,0,0 0/0:.:175:175:0:0%:112,63,0,0 -Example1_ref 8650 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:111,64,0,0 0/0:.:175:175:0:0%:111,64,0,0 -Example1_ref 8651 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:110,63,0,0 0/0:.:173:173:0:0%:110,63,0,0 -Example1_ref 8652 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:110,63,0,0 0/0:.:173:173:0:0%:110,63,0,0 -Example1_ref 8653 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:115,63,0,0 0/0:.:178:178:0:0%:115,63,0,0 -Example1_ref 8654 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:112,62,0,0 0/0:.:174:174:0:0%:112,62,0,0 -Example1_ref 8655 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:112,62,0,0 0/0:.:174:174:0:0%:112,62,0,0 -Example1_ref 8656 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:112,56,0,0 0/0:.:168:168:0:0%:112,56,0,0 -Example1_ref 8657 . C A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:111,62,0,1 0/0:.:174:173:1:0.57%:111,62,0,1 -Example1_ref 8658 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:111,63,0,0 0/0:.:174:174:0:0%:111,63,0,0 -Example1_ref 8659 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:175:175:0:0%:110,65,0,0 -Example1_ref 8660 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:178:178:0:0%:112,66,0,0 -Example1_ref 8661 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:111,62,0,0 0/0:.:173:173:0:0%:111,62,0,0 -Example1_ref 8662 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:113,65,0,0 0/0:.:178:178:0:0%:113,65,0,0 -Example1_ref 8663 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:175:175:0:0%:110,65,0,0 -Example1_ref 8664 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:175:175:0:0%:110,65,0,0 -Example1_ref 8665 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:108,64,0,0 0/0:.:172:172:0:0%:108,64,0,0 -Example1_ref 8666 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:108,66,0,0 0/0:.:174:174:0:0%:108,66,0,0 -Example1_ref 8667 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:108,66,0,0 0/0:.:174:174:0:0%:108,66,0,0 -Example1_ref 8668 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:0:0%:110,67,0,0 0/0:.:178:177:0:0%:110,67,0,0 -Example1_ref 8669 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:106,66,0,0 0/0:.:172:172:0:0%:106,66,0,0 -Example1_ref 8670 . G T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=6.8859E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:171:2:1.16%:102,69,2,0 0/0:.:173:171:2:1.16%:102,69,2,0 -Example1_ref 8671 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:105,68,0,0 0/0:.:173:173:0:0%:105,68,0,0 -Example1_ref 8672 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:108,67,0,0 0/0:.:175:175:0:0%:108,67,0,0 -Example1_ref 8673 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:105,67,0,0 0/0:.:172:172:0:0%:105,67,0,0 -Example1_ref 8674 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:171:171:0:0%:103,68,0,0 -Example1_ref 8675 . A T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:107,68,1,0 0/0:.:176:175:1:0.57%:107,68,1,0 -Example1_ref 8676 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:104,68,0,0 0/0:.:172:172:0:0%:104,68,0,0 -Example1_ref 8677 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:103,67,0,0 0/0:.:170:170:0:0%:103,67,0,0 -Example1_ref 8678 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:100,67,0,0 0/0:.:167:167:0:0%:100,67,0,0 -Example1_ref 8679 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:155:155:0:0%:93,62,0,0 -Example1_ref 8680 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:97,67,0,0 0/0:.:164:164:0:0%:97,67,0,0 -Example1_ref 8681 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:100,66,0,0 0/0:.:166:166:0:0%:100,66,0,0 -Example1_ref 8682 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:101,69,0,0 0/0:.:170:170:0:0%:101,69,0,0 -Example1_ref 8683 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:171:171:0:0%:103,68,0,0 -Example1_ref 8684 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:107,69,0,0 0/0:.:176:176:0:0%:107,69,0,0 -Example1_ref 8685 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:105,67,0,0 0/0:.:172:172:0:0%:105,67,0,0 -Example1_ref 8686 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:106,69,0,0 0/0:.:175:175:0:0%:106,69,0,0 -Example1_ref 8687 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:106,70,0,0 0/0:.:176:176:0:0%:106,70,0,0 -Example1_ref 8688 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:105,70,0,0 0/0:.:175:175:0:0%:105,70,0,0 -Example1_ref 8689 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:102,70,0,0 0/0:.:172:172:0:0%:102,70,0,0 -Example1_ref 8690 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:96,69,0,0 0/0:.:165:165:0:0%:96,69,0,0 -Example1_ref 8691 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:171:171:0:0%:103,68,0,0 -Example1_ref 8692 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:170:170:0:0%:106,64,0,0 -Example1_ref 8693 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:111,65,0,0 0/0:.:176:176:0:0%:111,65,0,0 -Example1_ref 8694 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:109,63,0,0 0/0:.:172:172:0:0%:109,63,0,0 -Example1_ref 8695 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:111,65,0,0 0/0:.:176:176:0:0%:111,65,0,0 -Example1_ref 8696 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:106,66,0,0 0/0:.:172:172:0:0%:106,66,0,0 -Example1_ref 8697 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:109,65,0,0 0/0:.:174:174:0:0%:109,65,0,0 -Example1_ref 8698 . GAGT G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:106,64,1,0 0/0:.:171:170:1:0.58%:106,64,1,0 -Example1_ref 8699 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:105,64,0,0 0/0:.:169:169:0:0%:105,64,0,0 -Example1_ref 8700 . GT G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:102,62,1,0 0/0:.:165:164:1:0.61%:102,62,1,0 -Example1_ref 8701 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:101,63,0,0 0/0:.:164:164:0:0%:101,63,0,0 -Example1_ref 8702 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:99,62,0,0 0/0:.:161:161:0:0%:99,62,0,0 -Example1_ref 8703 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:164:164:0:0%:99,65,0,0 -Example1_ref 8704 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:104,65,0,0 0/0:.:169:169:0:0%:104,65,0,0 -Example1_ref 8705 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:101,61,0,0 0/0:.:162:162:0:0%:101,61,0,0 -Example1_ref 8706 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:99,63,0,0 0/0:.:162:162:0:0%:99,63,0,0 -Example1_ref 8707 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:162:162:0:0%:98,64,0,0 -Example1_ref 8708 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 8709 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:100,63,0,0 0/0:.:163:163:0:0%:100,63,0,0 -Example1_ref 8710 . A AC . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:100,62,0,1 0/0:.:163:162:1:0.61%:100,62,0,1 -Example1_ref 8711 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:100,58,0,0 0/0:.:158:158:0:0%:100,58,0,0 -Example1_ref 8712 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:100,59,0,0 0/0:.:159:159:0:0%:100,59,0,0 -Example1_ref 8713 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:96,62,0,0 0/0:.:158:158:0:0%:96,62,0,0 -Example1_ref 8714 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:96,61,0,0 0/0:.:157:157:0:0%:96,61,0,0 -Example1_ref 8715 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:97,65,0,0 0/0:.:162:162:0:0%:97,65,0,0 -Example1_ref 8716 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:95,62,0,0 0/0:.:157:157:0:0%:95,62,0,0 -Example1_ref 8717 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:96,64,0,0 0/0:.:160:160:0:0%:96,64,0,0 -Example1_ref 8718 . A ACTGTCTCT . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:97,63,1,0 0/0:.:161:160:1:0.62%:97,63,1,0 -Example1_ref 8719 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:0:0%:94,63,0,0 0/0:.:158:157:0:0%:94,63,0,0 -Example1_ref 8720 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:161:161:0:0%:97,64,0,0 -Example1_ref 8721 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:95,63,0,0 0/0:.:158:158:0:0%:95,63,0,0 -Example1_ref 8722 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:96,67,0,0 0/0:.:163:163:0:0%:96,67,0,0 -Example1_ref 8723 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 8724 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:98,67,0,0 0/0:.:165:165:0:0%:98,67,0,0 -Example1_ref 8725 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 8726 . G T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:93,66,1,0 0/0:.:160:159:1:0.62%:93,66,1,0 -Example1_ref 8727 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 8728 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:95,66,0,0 0/0:.:161:161:0:0%:95,66,0,0 -Example1_ref 8729 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 8730 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:99,71,0,0 0/0:.:170:170:0:0%:99,71,0,0 -Example1_ref 8731 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 8732 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:99,69,0,0 0/0:.:168:168:0:0%:99,69,0,0 -Example1_ref 8733 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:98,65,0,0 0/0:.:163:163:0:0%:98,65,0,0 -Example1_ref 8734 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:99,72,0,0 0/0:.:171:171:0:0%:99,72,0,0 -Example1_ref 8735 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:101,73,0,0 0/0:.:174:174:0:0%:101,73,0,0 -Example1_ref 8736 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:99,72,0,0 0/0:.:171:171:0:0%:99,72,0,0 -Example1_ref 8737 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:97,73,0,0 0/0:.:170:170:0:0%:97,73,0,0 -Example1_ref 8738 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:166:166:0:0%:94,72,0,0 -Example1_ref 8739 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:96,73,0,0 0/0:.:169:169:0:0%:96,73,0,0 -Example1_ref 8740 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:100,72,0,0 0/0:.:172:172:0:0%:100,72,0,0 -Example1_ref 8741 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:95,72,0,0 0/0:.:167:167:0:0%:95,72,0,0 -Example1_ref 8742 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:171:171:0:0%:98,73,0,0 -Example1_ref 8743 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:95,72,0,0 0/0:.:167:167:0:0%:95,72,0,0 -Example1_ref 8744 . A G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:100,71,0,1 0/0:.:172:171:1:0.58%:100,71,0,1 -Example1_ref 8745 . T TCA . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:98,69,1,0 0/0:.:168:167:1:0.6%:98,69,1,0 -Example1_ref 8746 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:99,71,0,0 0/0:.:170:170:0:0%:99,71,0,0 -Example1_ref 8747 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:101,75,0,0 0/0:.:176:176:0:0%:101,75,0,0 -Example1_ref 8748 . C CTCTGTCTCT . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:94,74,1,0 0/0:.:169:168:1:0.59%:94,74,1,0 -Example1_ref 8749 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:96,74,0,0 0/0:.:170:170:0:0%:96,74,0,0 -Example1_ref 8750 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 8751 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:93,73,0,0 0/0:.:166:166:0:0%:93,73,0,0 -Example1_ref 8752 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:169:169:0:0%:95,74,0,0 -Example1_ref 8753 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 8754 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:95,71,0,0 0/0:.:166:166:0:0%:95,71,0,0 -Example1_ref 8755 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:165:165:0:0%:94,71,0,0 -Example1_ref 8756 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:93,72,0,0 0/0:.:165:165:0:0%:93,72,0,0 -Example1_ref 8757 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:166:166:0:0%:94,72,0,0 -Example1_ref 8758 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:165:165:0:0%:94,71,0,0 -Example1_ref 8759 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 8760 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:168:168:0:0%:96,72,0,0 -Example1_ref 8761 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 8762 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 8763 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:91,74,0,0 0/0:.:165:165:0:0%:91,74,0,0 -Example1_ref 8764 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:169:169:0:0%:95,74,0,0 -Example1_ref 8765 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:167:167:0:0%:93,74,0,0 -Example1_ref 8766 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:96,73,0,0 0/0:.:169:169:0:0%:96,73,0,0 -Example1_ref 8767 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:93,76,0,0 0/0:.:169:169:0:0%:93,76,0,0 -Example1_ref 8768 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:172:172:0:0%:93,79,0,0 -Example1_ref 8769 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:91,80,0,0 0/0:.:171:171:0:0%:91,80,0,0 -Example1_ref 8770 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:93,80,0,0 0/0:.:173:173:0:0%:93,80,0,0 -Example1_ref 8771 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:93,78,0,0 0/0:.:171:171:0:0%:93,78,0,0 -Example1_ref 8772 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:94,76,0,0 0/0:.:170:170:0:0%:94,76,0,0 -Example1_ref 8773 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:88,77,0,0 0/0:.:165:165:0:0%:88,77,0,0 -Example1_ref 8774 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:91,78,0,0 0/0:.:169:169:0:0%:91,78,0,0 -Example1_ref 8775 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:172:172:0:0%:93,79,0,0 -Example1_ref 8776 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:172:172:0:0%:93,79,0,0 -Example1_ref 8777 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:90,79,0,0 0/0:.:169:169:0:0%:90,79,0,0 -Example1_ref 8778 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:90,81,0,0 0/0:.:171:171:0:0%:90,81,0,0 -Example1_ref 8779 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:92,82,0,0 0/0:.:174:174:0:0%:92,82,0,0 -Example1_ref 8780 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:91,81,0,0 0/0:.:172:172:0:0%:91,81,0,0 -Example1_ref 8781 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:94,79,0,0 0/0:.:173:173:0:0%:94,79,0,0 -Example1_ref 8782 . A G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:93,78,0,1 0/0:.:172:171:1:0.58%:93,78,0,1 -Example1_ref 8783 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:96,82,0,0 0/0:.:178:178:0:0%:96,82,0,0 -Example1_ref 8784 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:172:172:0:0%:89,83,0,0 -Example1_ref 8785 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:175:175:0:0%:94,81,0,0 -Example1_ref 8786 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:96,80,0,0 0/0:.:176:176:0:0%:96,80,0,0 -Example1_ref 8787 . AACGAT A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:95,77,0,1 0/0:.:173:172:1:0.58%:95,77,0,1 -Example1_ref 8788 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:95,77,0,0 0/0:.:173:172:0:0%:95,77,0,0 -Example1_ref 8789 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:94,78,0,0 0/0:.:172:172:0:0%:94,78,0,0 -Example1_ref 8790 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:172:172:0:0%:93,79,0,0 -Example1_ref 8791 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:94,76,0,0 0/0:.:170:170:0:0%:94,76,0,0 -Example1_ref 8792 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:91,74,0,0 0/0:.:165:165:0:0%:91,74,0,0 -Example1_ref 8793 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:95,75,0,0 0/0:.:170:170:0:0%:95,75,0,0 -Example1_ref 8794 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:93,81,0,0 0/0:.:174:174:0:0%:93,81,0,0 -Example1_ref 8795 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:97,80,0,0 0/0:.:177:177:0:0%:97,80,0,0 -Example1_ref 8796 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:96,81,0,0 0/0:.:177:177:0:0%:96,81,0,0 -Example1_ref 8797 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:95,81,0,0 0/0:.:176:176:0:0%:95,81,0,0 -Example1_ref 8798 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:175:175:0:0%:94,81,0,0 -Example1_ref 8799 . G GCTGTCTCTT . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:90,81,1,0 0/0:.:172:171:1:0.58%:90,81,1,0 -Example1_ref 8800 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:90,82,0,0 0/0:.:173:172:0:0%:90,82,0,0 -Example1_ref 8801 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:90,82,0,0 0/0:.:172:172:0:0%:90,82,0,0 -Example1_ref 8802 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:92,82,0,0 0/0:.:174:174:0:0%:92,82,0,0 -Example1_ref 8803 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:91,78,0,0 0/0:.:169:169:0:0%:91,78,0,0 -Example1_ref 8804 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:91,80,0,0 0/0:.:171:171:0:0%:91,80,0,0 -Example1_ref 8805 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:89,82,0,0 0/0:.:171:171:0:0%:89,82,0,0 -Example1_ref 8806 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:90,82,0,0 0/0:.:172:172:0:0%:90,82,0,0 -Example1_ref 8807 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:174:174:0:0%:90,84,0,0 -Example1_ref 8808 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:88,82,0,0 0/0:.:170:170:0:0%:88,82,0,0 -Example1_ref 8809 . AT A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:84,84,1,0 0/0:.:169:168:1:0.59%:84,84,1,0 -Example1_ref 8810 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:0:0%:84,78,0,0 0/0:.:163:162:0:0%:84,78,0,0 -Example1_ref 8811 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:84,78,0,0 0/0:.:162:162:0:0%:84,78,0,0 -Example1_ref 8812 . A AATCC . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:85,77,1,0 0/0:.:163:162:1:0.61%:85,77,1,0 -Example1_ref 8813 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:166:166:0:0%:87,79,0,0 -Example1_ref 8814 . T A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:85,78,0,1 0/0:.:164:163:1:0.61%:85,78,0,1 -Example1_ref 8815 . A ACTGTCTC . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:85,80,1,0 0/0:.:166:165:1:0.6%:85,80,1,0 -Example1_ref 8816 . T TC . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:160:1:0.62%:83,77,1,0 0/0:.:162:160:1:0.62%:83,77,1,0 -Example1_ref 8817 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:0:0%:83,77,0,0 0/0:.:161:160:0:0%:83,77,0,0 -Example1_ref 8818 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:81,80,0,0 0/0:.:161:161:0:0%:81,80,0,0 -Example1_ref 8819 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:80,81,0,0 0/0:.:161:161:0:0%:80,81,0,0 -Example1_ref 8820 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:81,79,0,0 0/0:.:160:160:0:0%:81,79,0,0 -Example1_ref 8821 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:80,79,0,0 0/0:.:159:159:0:0%:80,79,0,0 -Example1_ref 8822 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:77,79,0,0 0/0:.:156:156:0:0%:77,79,0,0 -Example1_ref 8823 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:79,77,0,0 0/0:.:156:156:0:0%:79,77,0,0 -Example1_ref 8824 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:79,78,0,0 0/0:.:157:157:0:0%:79,78,0,0 -Example1_ref 8825 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:76,79,0,0 0/0:.:155:155:0:0%:76,79,0,0 -Example1_ref 8826 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:79,78,0,0 0/0:.:157:157:0:0%:79,78,0,0 -Example1_ref 8827 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:76,78,0,0 0/0:.:154:154:0:0%:76,78,0,0 -Example1_ref 8828 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:77,79,0,0 0/0:.:156:156:0:0%:77,79,0,0 -Example1_ref 8829 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:78,73,0,0 0/0:.:151:151:0:0%:78,73,0,0 -Example1_ref 8830 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:74,76,0,0 0/0:.:150:150:0:0%:74,76,0,0 -Example1_ref 8831 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:79,73,0,0 0/0:.:152:152:0:0%:79,73,0,0 -Example1_ref 8832 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:76,73,0,0 0/0:.:149:149:0:0%:76,73,0,0 -Example1_ref 8833 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:79,68,0,0 0/0:.:147:147:0:0%:79,68,0,0 -Example1_ref 8834 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:76,70,0,0 0/0:.:146:146:0:0%:76,70,0,0 -Example1_ref 8835 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:80,71,0,0 0/0:.:151:151:0:0%:80,71,0,0 -Example1_ref 8836 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:82,68,0,0 0/0:.:150:150:0:0%:82,68,0,0 -Example1_ref 8837 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:75,67,0,0 0/0:.:142:142:0:0%:75,67,0,0 -Example1_ref 8838 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:78,69,0,0 0/0:.:147:147:0:0%:78,69,0,0 -Example1_ref 8839 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:147:147:0:0%:77,70,0,0 -Example1_ref 8840 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:79,69,0,0 0/0:.:148:148:0:0%:79,69,0,0 -Example1_ref 8841 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:75,70,0,0 0/0:.:145:145:0:0%:75,70,0,0 -Example1_ref 8842 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:79,70,0,0 0/0:.:149:149:0:0%:79,70,0,0 -Example1_ref 8843 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:147:147:0:0%:77,70,0,0 -Example1_ref 8844 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:147:147:0:0%:77,70,0,0 -Example1_ref 8845 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:76,70,0,0 0/0:.:146:146:0:0%:76,70,0,0 -Example1_ref 8846 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:80,69,0,0 0/0:.:149:149:0:0%:80,69,0,0 -Example1_ref 8847 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:78,73,0,0 0/0:.:151:151:0:0%:78,73,0,0 -Example1_ref 8848 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:79,73,0,0 0/0:.:152:152:0:0%:79,73,0,0 -Example1_ref 8849 . A G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:1:0.66%:78,72,1,0 0/0:.:151:150:1:0.66%:78,72,1,0 -Example1_ref 8850 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:79,69,0,0 0/0:.:148:148:0:0%:79,69,0,0 -Example1_ref 8851 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:75,73,0,0 0/0:.:148:148:0:0%:75,73,0,0 -Example1_ref 8852 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:81,71,0,0 0/0:.:152:152:0:0%:81,71,0,0 -Example1_ref 8853 . T G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:79,72,0,1 0/0:.:152:151:1:0.66%:79,72,0,1 -Example1_ref 8854 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:79,70,0,0 0/0:.:149:149:0:0%:79,70,0,0 -Example1_ref 8855 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:77,73,0,0 0/0:.:150:150:0:0%:77,73,0,0 -Example1_ref 8856 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:80,74,0,0 0/0:.:154:154:0:0%:80,74,0,0 -Example1_ref 8857 . C A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=6.8877E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:147:2:1.34%:75,72,0,2 0/0:.:150:147:2:1.34%:75,72,0,2 -Example1_ref 8858 . A G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:149:1:0.67%:77,72,0,1 0/0:.:151:149:1:0.67%:77,72,0,1 -Example1_ref 8859 . G GACTGTCTCTT . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:143:1:0.69%:72,71,1,0 0/0:.:145:143:1:0.69%:72,71,1,0 -Example1_ref 8860 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:0:0%:76,72,0,0 0/0:.:149:148:0:0%:76,72,0,0 -Example1_ref 8861 . T G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:78,71,0,1 0/0:.:150:149:1:0.67%:78,71,0,1 -Example1_ref 8862 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:80,72,0,0 0/0:.:152:152:0:0%:80,72,0,0 -Example1_ref 8863 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:76,69,0,0 0/0:.:145:145:0:0%:76,69,0,0 -Example1_ref 8864 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:76,69,0,0 0/0:.:145:145:0:0%:76,69,0,0 -Example1_ref 8865 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:76,69,0,0 0/0:.:145:145:0:0%:76,69,0,0 -Example1_ref 8866 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:77,71,0,0 0/0:.:148:148:0:0%:77,71,0,0 -Example1_ref 8867 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:74,71,0,0 0/0:.:145:145:0:0%:74,71,0,0 -Example1_ref 8868 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:73,71,0,0 0/0:.:144:144:0:0%:73,71,0,0 -Example1_ref 8869 . A T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:71,70,1,0 0/0:.:142:141:1:0.7%:71,70,1,0 -Example1_ref 8870 . A AC . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:74,69,1,0 0/0:.:144:143:1:0.69%:74,69,1,0 -Example1_ref 8871 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:77,68,0,0 0/0:.:145:145:0:0%:77,68,0,0 -Example1_ref 8872 . G A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:72,67,0,1 0/0:.:140:139:1:0.71%:72,67,0,1 -Example1_ref 8873 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:75,68,0,0 0/0:.:143:143:0:0%:75,68,0,0 -Example1_ref 8874 . C CTCTTAT . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:72,70,1,0 0/0:.:143:142:1:0.7%:72,70,1,0 -Example1_ref 8875 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:71,70,0,0 0/0:.:141:141:0:0%:71,70,0,0 -Example1_ref 8876 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:71,70,0,0 0/0:.:141:141:0:0%:71,70,0,0 -Example1_ref 8877 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:72,70,0,0 0/0:.:142:142:0:0%:72,70,0,0 -Example1_ref 8878 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:70,69,0,0 0/0:.:139:139:0:0%:70,69,0,0 -Example1_ref 8879 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:72,69,0,0 0/0:.:141:141:0:0%:72,69,0,0 -Example1_ref 8880 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:71,69,0,0 0/0:.:140:140:0:0%:71,69,0,0 -Example1_ref 8881 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:61,67,0,0 0/0:.:128:128:0:0%:61,67,0,0 -Example1_ref 8882 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:62,71,0,0 0/0:.:133:133:0:0%:62,71,0,0 -Example1_ref 8883 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:59,70,0,0 0/0:.:129:129:0:0%:59,70,0,0 -Example1_ref 8884 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:60,68,0,0 0/0:.:128:128:0:0%:60,68,0,0 -Example1_ref 8885 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:128:128:0:0%:59,69,0,0 -Example1_ref 8886 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:60,70,0,0 0/0:.:130:130:0:0%:60,70,0,0 -Example1_ref 8887 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,0,1 0/0:.:132:131:1:0.76%:60,71,0,1 -Example1_ref 8888 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:60,72,0,0 0/0:.:132:132:0:0%:60,72,0,0 -Example1_ref 8889 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:60,72,0,0 0/0:.:132:132:0:0%:60,72,0,0 -Example1_ref 8890 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:131:131:0:0%:59,72,0,0 -Example1_ref 8891 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:59,68,0,0 0/0:.:127:127:0:0%:59,68,0,0 -Example1_ref 8892 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:60,70,0,0 0/0:.:130:130:0:0%:60,70,0,0 -Example1_ref 8893 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:63,71,0,0 0/0:.:134:134:0:0%:63,71,0,0 -Example1_ref 8894 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:62,70,0,0 0/0:.:132:132:0:0%:62,70,0,0 -Example1_ref 8895 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:63,72,0,0 0/0:.:135:135:0:0%:63,72,0,0 -Example1_ref 8896 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:63,71,0,0 0/0:.:134:134:0:0%:63,71,0,0 -Example1_ref 8897 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:135:135:0:0%:61,74,0,0 -Example1_ref 8898 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:136:136:0:0%:63,73,0,0 -Example1_ref 8899 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:64,75,0,0 0/0:.:139:139:0:0%:64,75,0,0 -Example1_ref 8900 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,0,1 0/0:.:132:131:1:0.76%:60,71,0,1 -Example1_ref 8901 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:61,70,0,0 0/0:.:131:131:0:0%:61,70,0,0 -Example1_ref 8902 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:57,70,0,0 0/0:.:127:127:0:0%:57,70,0,0 -Example1_ref 8903 . G T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,1,0 0/0:.:132:131:1:0.76%:60,71,1,0 -Example1_ref 8904 . G GTCTCT . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:55,73,1,0 0/0:.:129:128:1:0.78%:55,73,1,0 -Example1_ref 8905 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:61,72,0,0 0/0:.:133:133:0:0%:61,72,0,0 -Example1_ref 8906 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:64,73,0,0 0/0:.:137:137:0:0%:64,73,0,0 -Example1_ref 8907 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:64,72,0,0 0/0:.:136:136:0:0%:64,72,0,0 -Example1_ref 8908 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:62,73,0,0 0/0:.:135:135:0:0%:62,73,0,0 -Example1_ref 8909 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:62,74,0,0 0/0:.:136:136:0:0%:62,74,0,0 -Example1_ref 8910 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:136:136:0:0%:63,73,0,0 -Example1_ref 8911 . C A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:62,72,0,1 0/0:.:135:134:1:0.74%:62,72,0,1 -Example1_ref 8912 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:62,71,0,0 0/0:.:134:133:0:0%:62,71,0,0 -Example1_ref 8913 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:59,71,0,0 0/0:.:130:130:0:0%:59,71,0,0 -Example1_ref 8914 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:62,71,0,0 0/0:.:133:133:0:0%:62,71,0,0 -Example1_ref 8915 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 8916 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:131:131:0:0%:58,73,0,0 -Example1_ref 8917 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 8918 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:136:136:0:0%:63,73,0,0 -Example1_ref 8919 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:60,68,0,0 0/0:.:128:128:0:0%:60,68,0,0 -Example1_ref 8920 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:54,67,0,0 0/0:.:121:121:0:0%:54,67,0,0 -Example1_ref 8921 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:55,69,0,0 0/0:.:124:124:0:0%:55,69,0,0 -Example1_ref 8922 . C A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=6.8904E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:121:2:1.63%:58,63,0,2 0/0:.:123:121:2:1.63%:58,63,0,2 -Example1_ref 8923 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:55,70,0,0 0/0:.:125:125:0:0%:55,70,0,0 -Example1_ref 8924 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:52,70,0,0 0/0:.:122:122:0:0%:52,70,0,0 -Example1_ref 8925 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:128:128:0:0%:59,69,0,0 -Example1_ref 8926 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:57,68,0,0 0/0:.:125:125:0:0%:57,68,0,0 -Example1_ref 8927 . C A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:60,70,0,1 0/0:.:131:130:1:0.76%:60,70,0,1 -Example1_ref 8928 . T G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:60,68,0,1 0/0:.:129:128:1:0.78%:60,68,0,1 -Example1_ref 8929 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:60,70,0,0 0/0:.:130:130:0:0%:60,70,0,0 -Example1_ref 8930 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:57,67,0,0 0/0:.:124:124:0:0%:57,67,0,0 -Example1_ref 8931 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:56,67,0,0 0/0:.:123:123:0:0%:56,67,0,0 -Example1_ref 8932 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:56,70,0,0 0/0:.:126:126:0:0%:56,70,0,0 -Example1_ref 8933 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:58,68,0,0 0/0:.:126:126:0:0%:58,68,0,0 -Example1_ref 8934 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:59,66,0,0 0/0:.:125:125:0:0%:59,66,0,0 -Example1_ref 8935 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:58,67,0,0 0/0:.:125:125:0:0%:58,67,0,0 -Example1_ref 8936 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:55,65,0,0 0/0:.:120:120:0:0%:55,65,0,0 -Example1_ref 8937 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:57,66,0,0 0/0:.:123:123:0:0%:57,66,0,0 -Example1_ref 8938 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:56,65,0,0 0/0:.:121:121:0:0%:56,65,0,0 -Example1_ref 8939 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:54,62,0,0 0/0:.:116:116:0:0%:54,62,0,0 -Example1_ref 8940 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:56,63,0,0 0/0:.:119:119:0:0%:56,63,0,0 -Example1_ref 8941 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:58,62,0,0 0/0:.:120:120:0:0%:58,62,0,0 -Example1_ref 8942 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:58,61,0,0 0/0:.:119:119:0:0%:58,61,0,0 -Example1_ref 8943 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:56,61,0,0 0/0:.:117:117:0:0%:56,61,0,0 -Example1_ref 8944 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:58,61,0,0 0/0:.:119:119:0:0%:58,61,0,0 -Example1_ref 8945 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:55,61,0,0 0/0:.:116:116:0:0%:55,61,0,0 -Example1_ref 8946 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:57,61,0,0 0/0:.:118:118:0:0%:57,61,0,0 -Example1_ref 8947 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:58,64,0,0 0/0:.:122:122:0:0%:58,64,0,0 -Example1_ref 8948 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:61,64,0,0 0/0:.:125:125:0:0%:61,64,0,0 -Example1_ref 8949 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:63,63,0,0 0/0:.:126:126:0:0%:63,63,0,0 -Example1_ref 8950 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:64,62,0,0 0/0:.:126:126:0:0%:64,62,0,0 -Example1_ref 8951 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:64,61,0,0 0/0:.:125:125:0:0%:64,61,0,0 -Example1_ref 8952 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:62,62,0,0 0/0:.:124:124:0:0%:62,62,0,0 -Example1_ref 8953 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:64,60,0,0 0/0:.:124:124:0:0%:64,60,0,0 -Example1_ref 8954 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:63,62,0,0 0/0:.:125:125:0:0%:63,62,0,0 -Example1_ref 8955 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:123:123:0:0%:62,61,0,0 -Example1_ref 8956 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:122:122:0:0%:64,58,0,0 -Example1_ref 8957 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:121:121:0:0%:62,59,0,0 -Example1_ref 8958 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 8959 . G A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:63,56,0,1 0/0:.:120:119:1:0.83%:63,56,0,1 -Example1_ref 8960 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 8961 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 8962 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:121:121:0:0%:62,59,0,0 -Example1_ref 8963 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:64,60,0,0 0/0:.:124:124:0:0%:64,60,0,0 -Example1_ref 8964 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:64,60,0,0 0/0:.:124:124:0:0%:64,60,0,0 -Example1_ref 8965 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:124:124:0:0%:65,59,0,0 -Example1_ref 8966 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:63,60,0,0 0/0:.:123:123:0:0%:63,60,0,0 -Example1_ref 8967 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:123:123:0:0%:62,61,0,0 -Example1_ref 8968 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:62,58,0,0 0/0:.:120:120:0:0%:62,58,0,0 -Example1_ref 8969 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:60,59,0,0 0/0:.:119:119:0:0%:60,59,0,0 -Example1_ref 8970 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:61,60,0,0 0/0:.:121:121:0:0%:61,60,0,0 -Example1_ref 8971 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:59,62,0,0 0/0:.:121:121:0:0%:59,62,0,0 -Example1_ref 8972 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:62,60,0,0 0/0:.:122:122:0:0%:62,60,0,0 -Example1_ref 8973 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:61,58,0,0 0/0:.:119:119:0:0%:61,58,0,0 -Example1_ref 8974 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 8975 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:60,60,0,0 0/0:.:120:120:0:0%:60,60,0,0 -Example1_ref 8976 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:115:115:0:0%:57,58,0,0 -Example1_ref 8977 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:56,58,0,0 0/0:.:114:114:0:0%:56,58,0,0 -Example1_ref 8978 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 8979 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 8980 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 8981 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:55,58,0,0 0/0:.:113:113:0:0%:55,58,0,0 -Example1_ref 8982 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:115:115:0:0%:57,58,0,0 -Example1_ref 8983 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:116:116:0:0%:56,60,0,0 -Example1_ref 8984 . T TG . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:53,57,1,0 0/0:.:111:110:1:0.9%:53,57,1,0 -Example1_ref 8985 . G T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:52,55,1,0 0/0:.:108:107:1:0.93%:52,55,1,0 -Example1_ref 8986 . G T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=7.5111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:53,59,1,0 0/0:.:113:112:1:0.88%:53,59,1,0 -Example1_ref 8987 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:56,59,0,0 0/0:.:115:115:0:0%:56,59,0,0 -Example1_ref 8988 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:111:111:0:0%:54,57,0,0 -Example1_ref 8989 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:114:114:0:0%:55,59,0,0 -Example1_ref 8990 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:114:114:0:0%:55,59,0,0 -Example1_ref 8991 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:54,60,0,0 0/0:.:114:114:0:0%:54,60,0,0 -Example1_ref 8992 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:55,57,0,0 0/0:.:112:112:0:0%:55,57,0,0 -Example1_ref 8993 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:111:111:0:0%:52,59,0,0 -Example1_ref 8994 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 8995 . G T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=7.5117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:52,54,0,1 0/0:.:107:106:1:0.93%:52,54,0,1 -Example1_ref 8996 . C A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:54,54,0,1 0/0:.:109:108:1:0.92%:54,54,0,1 -Example1_ref 8997 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:55,57,0,0 0/0:.:112:112:0:0%:55,57,0,0 -Example1_ref 8998 . A T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=7.5114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:54,55,0,1 0/0:.:110:109:1:0.91%:54,55,0,1 -Example1_ref 8999 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:111:111:0:0%:54,57,0,0 -Example1_ref 9000 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:55,52,0,0 0/0:.:107:107:0:0%:55,52,0,0 -Example1_ref 9001 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:53,56,0,0 0/0:.:109:109:0:0%:53,56,0,0 -Example1_ref 9002 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 9003 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:108:108:0:0%:52,56,0,0 -Example1_ref 9004 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:51,55,0,0 0/0:.:106:106:0:0%:51,55,0,0 -Example1_ref 9005 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:52,55,0,0 0/0:.:107:107:0:0%:52,55,0,0 -Example1_ref 9006 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:109:109:0:0%:52,57,0,0 -Example1_ref 9007 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:106:106:0:0%:52,54,0,0 -Example1_ref 9008 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:105:105:0:0%:51,54,0,0 -Example1_ref 9009 . C A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=7.5123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:1:0.98%:52,49,0,1 0/0:.:102:101:1:0.98%:52,49,0,1 -Example1_ref 9010 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:46,55,0,0 0/0:.:101:101:0:0%:46,55,0,0 -Example1_ref 9011 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 9012 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:51,55,0,0 0/0:.:106:106:0:0%:51,55,0,0 -Example1_ref 9013 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:105:105:0:0%:50,55,0,0 -Example1_ref 9014 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:105:105:0:0%:50,55,0,0 -Example1_ref 9015 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:105:105:0:0%:50,55,0,0 -Example1_ref 9016 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:49,53,0,0 0/0:.:102:102:0:0%:49,53,0,0 -Example1_ref 9017 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 9018 . ATG A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:50,57,1,0 0/0:.:108:107:1:0.93%:50,57,1,0 -Example1_ref 9019 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:0:0%:51,58,0,0 0/0:.:110:109:0:0%:51,58,0,0 -Example1_ref 9020 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:0:0%:50,58,0,0 0/0:.:109:108:0:0%:50,58,0,0 -Example1_ref 9021 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:51,58,0,0 0/0:.:109:109:0:0%:51,58,0,0 -Example1_ref 9022 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:52,58,0,0 0/0:.:110:110:0:0%:52,58,0,0 -Example1_ref 9023 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:107:107:0:0%:51,56,0,0 -Example1_ref 9024 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:105:105:0:0%:48,57,0,0 -Example1_ref 9025 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:47,57,0,0 0/0:.:104:104:0:0%:47,57,0,0 -Example1_ref 9026 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:50,56,0,0 0/0:.:106:106:0:0%:50,56,0,0 -Example1_ref 9027 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 9028 . C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:51,52,0,0 0/0:.:103:103:0:0%:51,52,0,0 -Example1_ref 9029 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:107:107:0:0%:51,56,0,0 -Example1_ref 9030 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:56,58,0,0 0/0:.:114:114:0:0%:56,58,0,0 -Example1_ref 9031 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 9032 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:112:112:0:0%:53,59,0,0 -Example1_ref 9033 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:111:111:0:0%:53,58,0,0 -Example1_ref 9034 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:111:111:0:0%:52,59,0,0 -Example1_ref 9035 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:109:109:0:0%:52,57,0,0 -Example1_ref 9036 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:112:112:0:0%:53,59,0,0 -Example1_ref 9037 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:53,54,0,0 0/0:.:107:107:0:0%:53,54,0,0 -Example1_ref 9038 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:106:106:0:0%:52,54,0,0 -Example1_ref 9039 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:55,56,0,0 0/0:.:111:111:0:0%:55,56,0,0 -Example1_ref 9040 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:53,56,0,0 0/0:.:109:109:0:0%:53,56,0,0 -Example1_ref 9041 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 9042 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:51,55,0,0 0/0:.:106:106:0:0%:51,55,0,0 -Example1_ref 9043 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 9044 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:52,55,0,0 0/0:.:107:107:0:0%:52,55,0,0 -Example1_ref 9045 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:52,55,0,0 0/0:.:107:107:0:0%:52,55,0,0 -Example1_ref 9046 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 9047 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:47,54,0,0 0/0:.:101:101:0:0%:47,54,0,0 -Example1_ref 9048 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:106:106:0:0%:52,54,0,0 -Example1_ref 9049 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:107:107:0:0%:51,56,0,0 -Example1_ref 9050 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:109:109:0:0%:52,57,0,0 -Example1_ref 9051 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:55,58,0,0 0/0:.:113:113:0:0%:55,58,0,0 -Example1_ref 9052 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 9053 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 9054 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:112:112:0:0%:53,59,0,0 -Example1_ref 9055 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:108:108:0:0%:52,56,0,0 -Example1_ref 9056 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 9057 . A ACTGTCTCT . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=7.5114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:51,58,1,0 0/0:.:110:109:1:0.91%:51,58,1,0 -Example1_ref 9058 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 9059 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:111:111:0:0%:52,59,0,0 -Example1_ref 9060 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:52,58,0,0 0/0:.:110:110:0:0%:52,58,0,0 -Example1_ref 9061 . A G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:49,53,1,0 0/0:.:103:102:1:0.97%:49,53,1,0 -Example1_ref 9062 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:49,57,0,0 0/0:.:106:106:0:0%:49,57,0,0 -Example1_ref 9063 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 9064 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:105:105:0:0%:49,56,0,0 -Example1_ref 9065 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:105:105:0:0%:48,57,0,0 -Example1_ref 9066 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 9067 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:104:104:0:0%:50,54,0,0 -Example1_ref 9068 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 9069 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 9070 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:52,53,0,0 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 9071 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:49,57,0,0 0/0:.:106:106:0:0%:49,57,0,0 -Example1_ref 9072 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 9073 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:104:104:0:0%:50,54,0,0 -Example1_ref 9074 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 9075 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:108:108:0:0%:52,56,0,0 -Example1_ref 9076 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 9077 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 9078 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:52,53,0,0 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 9079 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:56,52,0,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 9080 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:54,55,0,0 0/0:.:109:109:0:0%:54,55,0,0 -Example1_ref 9081 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:108:108:0:0%:54,54,0,0 -Example1_ref 9082 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:108:108:0:0%:54,54,0,0 -Example1_ref 9083 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:106:106:0:0%:52,54,0,0 -Example1_ref 9084 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:49,54,0,0 0/0:.:103:103:0:0%:49,54,0,0 -Example1_ref 9085 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:46,54,0,0 0/0:.:100:100:0:0%:46,54,0,0 -Example1_ref 9086 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:50,50,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 9087 . C . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:47,47,0,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 9088 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:48,48,0,0 0/0:.:96:96:0:0%:48,48,0,0 -Example1_ref 9089 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:49,48,0,0 0/0:.:97:97:0:0%:49,48,0,0 -Example1_ref 9090 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:52,48,0,0 0/0:.:100:100:0:0%:52,48,0,0 -Example1_ref 9091 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:51,49,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 9092 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 9093 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:49,48,0,0 0/0:.:97:97:0:0%:49,48,0,0 -Example1_ref 9094 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:51,49,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 9095 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:50,48,0,0 0/0:.:98:98:0:0%:50,48,0,0 -Example1_ref 9096 . G T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.5128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:49,48,1,0 0/0:.:98:97:1:1.02%:49,48,1,0 -Example1_ref 9097 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:47,49,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 9098 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:52,48,0,0 0/0:.:100:100:0:0%:52,48,0,0 -Example1_ref 9099 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:50,49,0,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 9100 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:99:0:0%:51,48,0,0 0/0:.:100:99:0:0%:51,48,0,0 -Example1_ref 9101 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:50,48,0,0 0/0:.:98:98:0:0%:50,48,0,0 -Example1_ref 9102 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:49,47,0,0 0/0:.:96:96:0:0%:49,47,0,0 -Example1_ref 9103 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:49,49,0,0 0/0:.:98:98:0:0%:49,49,0,0 -Example1_ref 9104 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:48,50,0,0 0/0:.:98:98:0:0%:48,50,0,0 -Example1_ref 9105 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 9106 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 9107 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:51,45,0,0 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 9108 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 9109 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:48,45,0,0 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 9110 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:48,45,0,0 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 9111 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 9112 . G . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:48,46,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 9113 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:48,44,0,0 0/0:.:92:92:0:0%:48,44,0,0 -Example1_ref 9114 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:47,44,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 9115 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 9116 . TG T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=7.5138E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:1:1.1%:46,44,1,0 0/0:.:91:90:1:1.1%:46,44,1,0 -Example1_ref 9117 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 9118 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=7.5143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:87:1:1.14%:44,43,1,0 0/0:.:88:87:1:1.14%:44,43,1,0 -Example1_ref 9119 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:47,43,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 9120 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:47,44,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 9121 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:47,45,0,0 0/0:.:92:92:0:0%:47,45,0,0 -Example1_ref 9122 . AC A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=7.5137E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:1:1.09%:46,45,1,0 0/0:.:92:91:1:1.09%:46,45,1,0 -Example1_ref 9123 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:45,43,0,0 0/0:.:88:88:0:0%:45,43,0,0 -Example1_ref 9124 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:42,43,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 9125 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:44,47,0,0 0/0:.:91:91:0:0%:44,47,0,0 -Example1_ref 9126 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:45,45,0,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 9127 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:43,46,0,0 0/0:.:89:89:0:0%:43,46,0,0 -Example1_ref 9128 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:42,47,0,0 0/0:.:89:89:0:0%:42,47,0,0 -Example1_ref 9129 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:44,48,0,0 0/0:.:92:92:0:0%:44,48,0,0 -Example1_ref 9130 . G T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=7.5131E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:1:1.04%:46,49,1,0 0/0:.:96:95:1:1.04%:46,49,1,0 -Example1_ref 9131 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:47,48,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 9132 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:47,48,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 9133 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:47,48,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 9134 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:49,49,0,0 0/0:.:98:98:0:0%:49,49,0,0 -Example1_ref 9135 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:49,48,0,0 0/0:.:97:97:0:0%:49,48,0,0 -Example1_ref 9136 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:46,46,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 9137 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:46,48,0,0 0/0:.:94:94:0:0%:46,48,0,0 -Example1_ref 9138 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:45,48,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 9139 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:87:87:0:0%:42,45,0,0 -Example1_ref 9140 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:42,46,0,0 0/0:.:88:88:0:0%:42,46,0,0 -Example1_ref 9141 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:42,46,0,0 0/0:.:88:88:0:0%:42,46,0,0 -Example1_ref 9142 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:41,46,0,0 0/0:.:87:87:0:0%:41,46,0,0 -Example1_ref 9143 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:43,43,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 9144 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:42,42,0,0 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 9145 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:43,42,0,0 0/0:.:85:85:0:0%:43,42,0,0 -Example1_ref 9146 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:43,43,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 9147 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:86:86:0:0%:42,44,0,0 -Example1_ref 9148 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 9149 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 9150 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 9151 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:44,43,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 9152 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:43,48,0,0 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 9153 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:44,48,0,0 0/0:.:92:92:0:0%:44,48,0,0 -Example1_ref 9154 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:87:87:0:0%:42,45,0,0 -Example1_ref 9155 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 9156 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:86:86:0:0%:42,44,0,0 -Example1_ref 9157 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:41,43,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 9158 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:41,44,0,0 0/0:.:85:85:0:0%:41,44,0,0 -Example1_ref 9159 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:86:86:0:0%:42,44,0,0 -Example1_ref 9160 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:87:87:0:0%:43,44,0,0 -Example1_ref 9161 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:86:86:0:0%:42,44,0,0 -Example1_ref 9162 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:87:87:0:0%:43,44,0,0 -Example1_ref 9163 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:87:87:0:0%:43,44,0,0 -Example1_ref 9164 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:41,44,0,0 0/0:.:85:85:0:0%:41,44,0,0 -Example1_ref 9165 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:87:87:0:0%:42,45,0,0 -Example1_ref 9166 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:41,45,0,0 0/0:.:86:86:0:0%:41,45,0,0 -Example1_ref 9167 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:39,44,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 9168 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:43,43,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 9169 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:43,38,0,0 0/0:.:81:81:0:0%:43,38,0,0 -Example1_ref 9170 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:87:87:0:0%:43,44,0,0 -Example1_ref 9171 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:47,38,0,0 0/0:.:85:85:0:0%:47,38,0,0 -Example1_ref 9172 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:47,44,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 9173 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:47,43,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 9174 . T C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=7.514E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:1:1.11%:47,42,0,1 0/0:.:90:89:1:1.11%:47,42,0,1 -Example1_ref 9175 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 9176 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 9177 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:45,44,0,0 0/0:.:89:89:0:0%:45,44,0,0 -Example1_ref 9178 . T A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=7.5138E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:1:1.1%:47,43,0,1 0/0:.:91:90:1:1.1%:47,43,0,1 -Example1_ref 9179 . A ACTGTCTC . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=7.5141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:88:1:1.12%:46,42,1,0 0/0:.:89:88:1:1.12%:46,42,1,0 -Example1_ref 9180 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:45,40,0,0 0/0:.:85:85:0:0%:45,40,0,0 -Example1_ref 9181 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:44,38,0,0 0/0:.:82:82:0:0%:44,38,0,0 -Example1_ref 9182 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:45,40,0,0 0/0:.:85:85:0:0%:45,40,0,0 -Example1_ref 9183 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:43,38,0,0 0/0:.:81:81:0:0%:43,38,0,0 -Example1_ref 9184 . G T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=7.5153E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:81:1:1.22%:41,40,1,0 0/0:.:82:81:1:1.22%:41,40,1,0 -Example1_ref 9185 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 9186 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 9187 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:46,41,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 9188 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:48,41,0,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 9189 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:48,42,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 9190 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 9191 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 9192 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:51,43,0,0 0/0:.:94:94:0:0%:51,43,0,0 -Example1_ref 9193 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 9194 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:51,43,0,0 0/0:.:94:94:0:0%:51,43,0,0 -Example1_ref 9195 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 9196 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 9197 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 9198 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 9199 . G . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:54,40,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 9200 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 9201 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 9202 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 9203 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 9204 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 9205 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 9206 . GAC G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=7.5132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:94:1:1.05%:51,43,1,0 0/0:.:95:94:1:1.05%:51,43,1,0 -Example1_ref 9207 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:52,44,0,0 0/0:.:96:96:0:0%:52,44,0,0 -Example1_ref 9208 . C A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.5127E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:1:1.01%:56,42,0,1 0/0:.:99:98:1:1.01%:56,42,0,1 -Example1_ref 9209 . C . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:52,42,0,0 0/0:.:94:94:0:0%:52,42,0,0 -Example1_ref 9210 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:53,44,0,0 0/0:.:97:97:0:0%:53,44,0,0 -Example1_ref 9211 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 9212 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:56,45,0,0 0/0:.:102:101:0:0%:56,45,0,0 -Example1_ref 9213 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:0:0%:56,44,0,0 0/0:.:101:100:0:0%:56,44,0,0 -Example1_ref 9214 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:0:0%:52,45,0,0 0/0:.:98:97:0:0%:52,45,0,0 -Example1_ref 9215 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:0:0%:53,45,0,0 0/0:.:99:98:0:0%:53,45,0,0 -Example1_ref 9216 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:54,47,0,0 0/0:.:102:101:0:0%:54,47,0,0 -Example1_ref 9217 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 9218 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:56,43,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 9219 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 9220 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:54,47,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 9221 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 9222 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:0:0%:54,46,0,0 0/0:.:101:100:0:0%:54,46,0,0 -Example1_ref 9223 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:53,47,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 9224 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:54,47,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 9225 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:52,47,0,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 9226 . G A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.5127E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:1:1.01%:52,46,0,1 0/0:.:99:98:1:1.01%:52,46,0,1 -Example1_ref 9227 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:51,46,0,0 0/0:.:97:97:0:0%:51,46,0,0 -Example1_ref 9228 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 9229 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 9230 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 9231 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:56,45,0,0 0/0:.:101:101:0:0%:56,45,0,0 -Example1_ref 9232 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 9233 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 9234 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 9235 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 9236 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 9237 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:58,45,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 9238 . A C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:57,45,1,0 0/0:.:103:102:1:0.97%:57,45,1,0 -Example1_ref 9239 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 9240 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 9241 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:55,41,0,0 0/0:.:96:96:0:0%:55,41,0,0 -Example1_ref 9242 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 9243 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:56,41,0,0 0/0:.:97:97:0:0%:56,41,0,0 -Example1_ref 9244 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:57,41,0,0 0/0:.:98:98:0:0%:57,41,0,0 -Example1_ref 9245 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 9246 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:56,38,0,0 0/0:.:94:94:0:0%:56,38,0,0 -Example1_ref 9247 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:55,41,0,0 0/0:.:96:96:0:0%:55,41,0,0 -Example1_ref 9248 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:53,41,0,0 0/0:.:94:94:0:0%:53,41,0,0 -Example1_ref 9249 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 9250 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 9251 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 9252 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 9253 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 9254 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 9255 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 9256 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 9257 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 9258 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 9259 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:56,41,0,0 0/0:.:97:97:0:0%:56,41,0,0 -Example1_ref 9260 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 9261 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 9262 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 9263 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 9264 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 9265 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:66,44,0,0 0/0:.:110:110:0:0%:66,44,0,0 -Example1_ref 9266 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:68,43,0,0 0/0:.:111:111:0:0%:68,43,0,0 -Example1_ref 9267 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:108:108:0:0%:65,43,0,0 -Example1_ref 9268 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:65,42,0,0 0/0:.:107:107:0:0%:65,42,0,0 -Example1_ref 9269 . A G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.5116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:64,43,0,1 0/0:.:108:107:1:0.93%:64,43,0,1 -Example1_ref 9270 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:66,44,0,0 0/0:.:110:110:0:0%:66,44,0,0 -Example1_ref 9271 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:108:108:0:0%:64,44,0,0 -Example1_ref 9272 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:108:108:0:0%:64,44,0,0 -Example1_ref 9273 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:62,45,0,0 0/0:.:107:107:0:0%:62,45,0,0 -Example1_ref 9274 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:66,46,0,0 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 9275 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:113:113:0:0%:67,46,0,0 -Example1_ref 9276 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:113:113:0:0%:67,46,0,0 -Example1_ref 9277 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:68,47,0,0 0/0:.:115:115:0:0%:68,47,0,0 -Example1_ref 9278 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:65,46,0,0 0/0:.:111:111:0:0%:65,46,0,0 -Example1_ref 9279 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 9280 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:115:115:0:0%:67,48,0,0 -Example1_ref 9281 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:115:115:0:0%:67,48,0,0 -Example1_ref 9282 . T TTCTGTCTCTTA . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.5109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:66,48,1,0 0/0:.:115:114:1:0.87%:66,48,1,0 -Example1_ref 9283 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:66,47,0,0 0/0:.:113:113:0:0%:66,47,0,0 -Example1_ref 9284 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:66,47,0,0 0/0:.:113:113:0:0%:66,47,0,0 -Example1_ref 9285 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:69,46,0,0 0/0:.:115:115:0:0%:69,46,0,0 -Example1_ref 9286 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:70,46,0,0 0/0:.:116:116:0:0%:70,46,0,0 -Example1_ref 9287 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:68,47,0,0 0/0:.:115:115:0:0%:68,47,0,0 -Example1_ref 9288 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:67,47,0,0 0/0:.:114:114:0:0%:67,47,0,0 -Example1_ref 9289 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:69,47,0,0 0/0:.:116:116:0:0%:69,47,0,0 -Example1_ref 9290 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:70,48,0,0 0/0:.:118:118:0:0%:70,48,0,0 -Example1_ref 9291 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:69,48,0,0 0/0:.:117:117:0:0%:69,48,0,0 -Example1_ref 9292 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:119:119:0:0%:70,49,0,0 -Example1_ref 9293 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:120:120:0:0%:70,50,0,0 -Example1_ref 9294 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:121:121:0:0%:72,49,0,0 -Example1_ref 9295 . A ACT . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=7.5104E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:70,50,1,0 0/0:.:121:120:1:0.83%:70,50,1,0 -Example1_ref 9296 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:80,50,0,0 0/0:.:130:130:0:0%:80,50,0,0 -Example1_ref 9297 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:80,51,0,0 0/0:.:132:131:0:0%:80,51,0,0 -Example1_ref 9298 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:0:0%:80,52,0,0 0/0:.:133:132:0:0%:80,52,0,0 -Example1_ref 9299 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:80,53,0,0 0/0:.:134:133:0:0%:80,53,0,0 -Example1_ref 9300 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:79,52,0,0 0/0:.:132:131:0:0%:79,52,0,0 -Example1_ref 9301 . G A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:77,53,1,0 0/0:.:131:130:1:0.76%:77,53,1,0 -Example1_ref 9302 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 9303 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:82,54,0,0 0/0:.:136:136:0:0%:82,54,0,0 -Example1_ref 9304 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:84,54,0,0 0/0:.:138:138:0:0%:84,54,0,0 -Example1_ref 9305 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:82,52,0,0 0/0:.:134:134:0:0%:82,52,0,0 -Example1_ref 9306 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:138:138:0:0%:86,52,0,0 -Example1_ref 9307 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:138:138:0:0%:86,52,0,0 -Example1_ref 9308 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:139:139:0:0%:87,52,0,0 -Example1_ref 9309 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:138:138:0:0%:86,52,0,0 -Example1_ref 9310 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:85,49,0,0 0/0:.:134:134:0:0%:85,49,0,0 -Example1_ref 9311 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:85,53,0,0 0/0:.:138:138:0:0%:85,53,0,0 -Example1_ref 9312 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:85,54,0,0 0/0:.:139:139:0:0%:85,54,0,0 -Example1_ref 9313 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:85,56,0,0 0/0:.:141:141:0:0%:85,56,0,0 -Example1_ref 9314 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:83,56,0,0 0/0:.:139:139:0:0%:83,56,0,0 -Example1_ref 9315 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:85,52,0,0 0/0:.:137:137:0:0%:85,52,0,0 -Example1_ref 9316 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:139:139:0:0%:84,55,0,0 -Example1_ref 9317 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:85,56,0,0 0/0:.:141:141:0:0%:85,56,0,0 -Example1_ref 9318 . T A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:87,55,0,1 0/0:.:143:142:1:0.7%:87,55,0,1 -Example1_ref 9319 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:84,55,0,0 0/0:.:140:139:0:0%:84,55,0,0 -Example1_ref 9320 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:81,54,0,0 0/0:.:135:135:0:0%:81,54,0,0 -Example1_ref 9321 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:83,53,0,0 0/0:.:136:136:0:0%:83,53,0,0 -Example1_ref 9322 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:84,53,0,0 0/0:.:137:137:0:0%:84,53,0,0 -Example1_ref 9323 . G T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:78,54,1,0 0/0:.:133:132:1:0.75%:78,54,1,0 -Example1_ref 9324 . G T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:76,54,1,0 0/0:.:131:130:1:0.76%:76,54,1,0 -Example1_ref 9325 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:79,53,0,0 0/0:.:132:132:0:0%:79,53,0,0 -Example1_ref 9326 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:134:134:0:0%:81,53,0,0 -Example1_ref 9327 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:80,54,0,0 0/0:.:134:134:0:0%:80,54,0,0 -Example1_ref 9328 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 9329 . T TAAGAGACA . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:80,56,0,1 0/0:.:137:136:1:0.73%:80,56,0,1 -Example1_ref 9330 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:81,60,0,0 0/0:.:141:141:0:0%:81,60,0,0 -Example1_ref 9331 . G T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:84,60,1,0 0/0:.:145:144:1:0.69%:84,60,1,0 -Example1_ref 9332 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:84,60,0,0 0/0:.:144:144:0:0%:84,60,0,0 -Example1_ref 9333 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:86,60,0,0 0/0:.:146:146:0:0%:86,60,0,0 -Example1_ref 9334 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:148:148:0:0%:87,61,0,0 -Example1_ref 9335 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:148:148:0:0%:87,61,0,0 -Example1_ref 9336 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:87,60,0,0 0/0:.:147:147:0:0%:87,60,0,0 -Example1_ref 9337 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:148:148:0:0%:87,61,0,0 -Example1_ref 9338 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:89,61,0,0 0/0:.:150:150:0:0%:89,61,0,0 -Example1_ref 9339 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:86,61,0,0 0/0:.:147:147:0:0%:86,61,0,0 -Example1_ref 9340 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:89,59,0,0 0/0:.:148:148:0:0%:89,59,0,0 -Example1_ref 9341 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:87,58,0,0 0/0:.:145:145:0:0%:87,58,0,0 -Example1_ref 9342 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:88,56,0,0 0/0:.:144:144:0:0%:88,56,0,0 -Example1_ref 9343 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:88,62,0,0 0/0:.:150:150:0:0%:88,62,0,0 -Example1_ref 9344 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:88,61,0,0 0/0:.:149:149:0:0%:88,61,0,0 -Example1_ref 9345 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:144:144:0:0%:83,61,0,0 -Example1_ref 9346 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:91,60,0,0 0/0:.:151:151:0:0%:91,60,0,0 -Example1_ref 9347 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 9348 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:148:148:0:0%:90,58,0,0 -Example1_ref 9349 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:153:153:0:0%:91,62,0,0 -Example1_ref 9350 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:155:155:0:0%:93,62,0,0 -Example1_ref 9351 . A T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.5082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:90,62,1,0 0/0:.:153:152:1:0.65%:90,62,1,0 -Example1_ref 9352 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:153:153:0:0%:91,62,0,0 -Example1_ref 9353 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:94,62,0,0 0/0:.:156:156:0:0%:94,62,0,0 -Example1_ref 9354 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:92,62,0,0 0/0:.:154:154:0:0%:92,62,0,0 -Example1_ref 9355 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:92,60,0,0 0/0:.:152:152:0:0%:92,60,0,0 -Example1_ref 9356 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:92,60,0,0 0/0:.:152:152:0:0%:92,60,0,0 -Example1_ref 9357 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:92,61,0,0 0/0:.:153:153:0:0%:92,61,0,0 -Example1_ref 9358 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:93,60,0,0 0/0:.:153:153:0:0%:93,60,0,0 -Example1_ref 9359 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:0:0%:91,59,0,0 0/0:.:151:150:0:0%:91,59,0,0 -Example1_ref 9360 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:89,62,0,0 0/0:.:151:151:0:0%:89,62,0,0 -Example1_ref 9361 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:88,63,0,0 0/0:.:151:151:0:0%:88,63,0,0 -Example1_ref 9362 . A T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:86,63,1,0 0/0:.:150:149:1:0.67%:86,63,1,0 -Example1_ref 9363 . A C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:86,63,1,0 0/0:.:150:149:1:0.67%:86,63,1,0 -Example1_ref 9364 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:92,63,0,0 0/0:.:155:155:0:0%:92,63,0,0 -Example1_ref 9365 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:94,64,0,0 0/0:.:158:158:0:0%:94,64,0,0 -Example1_ref 9366 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:94,64,0,0 0/0:.:158:158:0:0%:94,64,0,0 -Example1_ref 9367 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:0:0%:91,64,0,0 0/0:.:156:155:0:0%:91,64,0,0 -Example1_ref 9368 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:92,64,0,0 0/0:.:156:156:0:0%:92,64,0,0 -Example1_ref 9369 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:92,64,0,0 0/0:.:156:156:0:0%:92,64,0,0 -Example1_ref 9370 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:92,65,0,0 0/0:.:157:157:0:0%:92,65,0,0 -Example1_ref 9371 . T G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:94,62,0,1 0/0:.:157:156:1:0.64%:94,62,0,1 -Example1_ref 9372 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:97,61,0,0 0/0:.:158:158:0:0%:97,61,0,0 -Example1_ref 9373 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:98,63,0,0 0/0:.:161:161:0:0%:98,63,0,0 -Example1_ref 9374 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:100,64,0,0 0/0:.:164:164:0:0%:100,64,0,0 -Example1_ref 9375 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:100,64,0,0 0/0:.:164:164:0:0%:100,64,0,0 -Example1_ref 9376 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:99,64,0,0 0/0:.:163:163:0:0%:99,64,0,0 -Example1_ref 9377 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:100,64,0,0 0/0:.:164:164:0:0%:100,64,0,0 -Example1_ref 9378 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:162:162:0:0%:98,64,0,0 -Example1_ref 9379 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:155:155:0:0%:93,62,0,0 -Example1_ref 9380 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:94,63,0,0 0/0:.:157:157:0:0%:94,63,0,0 -Example1_ref 9381 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:92,63,0,0 0/0:.:155:155:0:0%:92,63,0,0 -Example1_ref 9382 . GA G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:94,62,1,0 0/0:.:157:156:1:0.64%:94,62,1,0 -Example1_ref 9383 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:153:153:0:0%:91,62,0,0 -Example1_ref 9384 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:93,63,0,0 0/0:.:156:156:0:0%:93,63,0,0 -Example1_ref 9385 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:98,62,0,0 0/0:.:160:160:0:0%:98,62,0,0 -Example1_ref 9386 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:103,63,0,0 0/0:.:166:166:0:0%:103,63,0,0 -Example1_ref 9387 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:102,64,0,0 0/0:.:166:166:0:0%:102,64,0,0 -Example1_ref 9388 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:101,62,0,0 0/0:.:163:163:0:0%:101,62,0,0 -Example1_ref 9389 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:101,63,0,0 0/0:.:164:164:0:0%:101,63,0,0 -Example1_ref 9390 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:99,64,0,0 0/0:.:163:163:0:0%:99,64,0,0 -Example1_ref 9391 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:101,63,0,0 0/0:.:164:164:0:0%:101,63,0,0 -Example1_ref 9392 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:103,63,0,0 0/0:.:166:166:0:0%:103,63,0,0 -Example1_ref 9393 . AT A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:104,64,1,0 0/0:.:169:168:1:0.59%:104,64,1,0 -Example1_ref 9394 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:104,63,0,0 0/0:.:168:167:0:0%:104,63,0,0 -Example1_ref 9395 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:105,63,0,0 0/0:.:168:168:0:0%:105,63,0,0 -Example1_ref 9396 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:0:0%:105,57,0,0 0/0:.:163:162:0:0%:105,57,0,0 -Example1_ref 9397 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:0:0%:105,59,0,0 0/0:.:165:164:0:0%:105,59,0,0 -Example1_ref 9398 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:105,60,0,0 0/0:.:166:165:0:0%:105,60,0,0 -Example1_ref 9399 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:0:0%:100,59,0,0 0/0:.:160:159:0:0%:100,59,0,0 -Example1_ref 9400 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:100,60,0,0 0/0:.:160:160:0:0%:100,60,0,0 -Example1_ref 9401 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:98,62,0,0 0/0:.:160:160:0:0%:98,62,0,0 -Example1_ref 9402 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:96,60,0,0 0/0:.:156:156:0:0%:96,60,0,0 -Example1_ref 9403 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:100,60,0,0 0/0:.:160:160:0:0%:100,60,0,0 -Example1_ref 9404 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:103,64,0,0 0/0:.:167:167:0:0%:103,64,0,0 -Example1_ref 9405 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:170:170:0:0%:106,64,0,0 -Example1_ref 9406 . G A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:104,60,0,1 0/0:.:165:164:1:0.61%:104,60,0,1 -Example1_ref 9407 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:103,60,0,0 0/0:.:163:163:0:0%:103,60,0,0 -Example1_ref 9408 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:105,64,0,0 0/0:.:169:169:0:0%:105,64,0,0 -Example1_ref 9409 . A AG . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:103,64,0,1 0/0:.:168:167:1:0.6%:103,64,0,1 -Example1_ref 9410 . G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:115,66,0,0 0/0:.:181:181:0:0%:115,66,0,0 -Example1_ref 9411 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:113,67,0,0 0/0:.:180:180:0:0%:113,67,0,0 -Example1_ref 9412 . T C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:115,68,1,0 0/0:.:184:183:1:0.54%:115,68,1,0 -Example1_ref 9413 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:178:178:0:0%:112,66,0,0 -Example1_ref 9414 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:114,67,0,0 0/0:.:181:181:0:0%:114,67,0,0 -Example1_ref 9415 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:114,68,0,0 0/0:.:182:182:0:0%:114,68,0,0 -Example1_ref 9416 . T TTGC . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:115,69,1,0 0/0:.:185:184:1:0.54%:115,69,1,0 -Example1_ref 9417 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:116,72,0,0 0/0:.:188:188:0:0%:116,72,0,0 -Example1_ref 9418 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:0:0%:118,72,0,0 0/0:.:191:190:0:0%:118,72,0,0 -Example1_ref 9419 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:117,70,0,0 0/0:.:187:187:0:0%:117,70,0,0 -Example1_ref 9420 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:117,72,0,0 0/0:.:189:189:0:0%:117,72,0,0 -Example1_ref 9421 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:115,70,0,0 0/0:.:185:185:0:0%:115,70,0,0 -Example1_ref 9422 . C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:114,70,0,0 0/0:.:184:184:0:0%:114,70,0,0 -Example1_ref 9423 . C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:114,66,0,0 0/0:.:180:180:0:0%:114,66,0,0 -Example1_ref 9424 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:113,71,0,0 0/0:.:184:184:0:0%:113,71,0,0 -Example1_ref 9425 . AT A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:114,72,1,0 0/0:.:187:186:1:0.53%:114,72,1,0 -Example1_ref 9426 . T C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:113,71,1,0 0/0:.:185:184:1:0.54%:113,71,1,0 -Example1_ref 9427 . T C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:183:1:0.54%:112,71,1,0 0/0:.:185:183:1:0.54%:112,71,1,0 -Example1_ref 9428 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:114,71,0,0 0/0:.:185:185:0:0%:114,71,0,0 -Example1_ref 9429 . TG T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:117,68,0,1 0/0:.:186:185:1:0.54%:117,68,0,1 -Example1_ref 9430 . G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:115,66,0,0 0/0:.:181:181:0:0%:115,66,0,0 -Example1_ref 9431 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:115,69,0,0 0/0:.:184:184:0:0%:115,69,0,0 -Example1_ref 9432 . G T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:110,68,1,0 0/0:.:179:178:1:0.56%:110,68,1,0 -Example1_ref 9433 . G T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:119,69,1,0 0/0:.:189:188:1:0.53%:119,69,1,0 -Example1_ref 9434 . G T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:116,72,1,0 0/0:.:189:188:1:0.53%:116,72,1,0 -Example1_ref 9435 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:118,72,0,0 0/0:.:190:190:0:0%:118,72,0,0 -Example1_ref 9436 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:119,74,0,0 0/0:.:193:193:0:0%:119,74,0,0 -Example1_ref 9437 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:118,74,0,0 0/0:.:192:192:0:0%:118,74,0,0 -Example1_ref 9438 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:121,74,0,0 0/0:.:195:195:0:0%:121,74,0,0 -Example1_ref 9439 . G T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:120,73,1,0 0/0:.:194:193:1:0.52%:120,73,1,0 -Example1_ref 9440 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:124,74,0,0 0/0:.:198:198:0:0%:124,74,0,0 -Example1_ref 9441 . C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:125,74,0,0 0/0:.:199:199:0:0%:125,74,0,0 -Example1_ref 9442 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:124,73,0,0 0/0:.:197:197:0:0%:124,73,0,0 -Example1_ref 9443 . T C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:121,73,1,0 0/0:.:195:194:1:0.51%:121,73,1,0 -Example1_ref 9444 . T C . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:124,72,0,1 0/0:.:197:196:1:0.51%:124,72,0,1 -Example1_ref 9445 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:124,73,0,0 0/0:.:197:197:0:0%:124,73,0,0 -Example1_ref 9446 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:118,74,0,0 0/0:.:192:192:0:0%:118,74,0,0 -Example1_ref 9447 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:125,76,0,0 0/0:.:201:201:0:0%:125,76,0,0 -Example1_ref 9448 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:131,75,0,0 0/0:.:206:206:0:0%:131,75,0,0 -Example1_ref 9449 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:133,76,0,0 0/0:.:209:209:0:0%:133,76,0,0 -Example1_ref 9450 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:136,75,0,0 0/0:.:211:211:0:0%:136,75,0,0 -Example1_ref 9451 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:133,75,0,0 0/0:.:208:208:0:0%:133,75,0,0 -Example1_ref 9452 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:133,75,0,0 0/0:.:208:208:0:0%:133,75,0,0 -Example1_ref 9453 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:134,78,0,0 0/0:.:212:212:0:0%:134,78,0,0 -Example1_ref 9454 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:133,83,0,0 0/0:.:216:216:0:0%:133,83,0,0 -Example1_ref 9455 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:214:0:0%:128,86,0,0 0/0:.:215:214:0:0%:128,86,0,0 -Example1_ref 9456 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:124,88,0,0 0/0:.:212:212:0:0%:124,88,0,0 -Example1_ref 9457 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:124,88,0,0 0/0:.:212:212:0:0%:124,88,0,0 -Example1_ref 9458 . T C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:216:1:0.46%:130,86,1,0 0/0:.:218:216:1:0.46%:130,86,1,0 -Example1_ref 9459 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:132,88,0,0 0/0:.:220:220:0:0%:132,88,0,0 -Example1_ref 9460 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:134,88,0,0 0/0:.:222:222:0:0%:134,88,0,0 -Example1_ref 9461 . T C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:136,88,1,0 0/0:.:225:224:1:0.44%:136,88,1,0 -Example1_ref 9462 . T C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:136,88,0,1 0/0:.:225:224:1:0.44%:136,88,0,1 -Example1_ref 9463 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:133,89,0,0 0/0:.:222:222:0:0%:133,89,0,0 -Example1_ref 9464 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:129,87,0,0 0/0:.:216:216:0:0%:129,87,0,0 -Example1_ref 9465 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:133,90,0,0 0/0:.:223:223:0:0%:133,90,0,0 -Example1_ref 9466 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:131,88,0,0 0/0:.:219:219:0:0%:131,88,0,0 -Example1_ref 9467 . C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:132,90,0,0 0/0:.:222:222:0:0%:132,90,0,0 -Example1_ref 9468 . C CTG . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:128,88,1,0 0/0:.:217:216:1:0.46%:128,88,1,0 -Example1_ref 9469 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:137,88,0,0 0/0:.:225:225:0:0%:137,88,0,0 -Example1_ref 9470 . C A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:139,88,0,1 0/0:.:228:227:1:0.44%:139,88,0,1 -Example1_ref 9471 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:138,87,0,0 0/0:.:225:225:0:0%:138,87,0,0 -Example1_ref 9472 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:132,90,0,0 0/0:.:222:222:0:0%:132,90,0,0 -Example1_ref 9473 . G T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:136,89,1,0 0/0:.:226:225:1:0.44%:136,89,1,0 -Example1_ref 9474 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:141,88,0,0 0/0:.:229:229:0:0%:141,88,0,0 -Example1_ref 9475 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:139,91,0,0 0/0:.:230:230:0:0%:139,91,0,0 -Example1_ref 9476 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:138,91,0,0 0/0:.:229:229:0:0%:138,91,0,0 -Example1_ref 9477 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:138,93,0,0 0/0:.:231:231:0:0%:138,93,0,0 -Example1_ref 9478 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:140,93,0,0 0/0:.:233:233:0:0%:140,93,0,0 -Example1_ref 9479 . T TAAGAGACAG . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=6.8831E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:231:2:0.86%:142,89,0,2 0/0:.:233:231:2:0.86%:142,89,0,2 -Example1_ref 9480 . C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:144,87,0,0 0/0:.:231:231:0:0%:144,87,0,0 -Example1_ref 9481 . C CTGTCT . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:135,89,1,0 0/0:.:225:224:1:0.44%:135,89,1,0 -Example1_ref 9482 . C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:0:0%:144,86,0,0 0/0:.:231:230:0:0%:144,86,0,0 -Example1_ref 9483 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:0:0%:143,87,0,0 0/0:.:231:230:0:0%:143,87,0,0 -Example1_ref 9484 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:0:0%:142,86,0,0 0/0:.:229:228:0:0%:142,86,0,0 -Example1_ref 9485 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:0:0%:146,88,0,0 0/0:.:235:234:0:0%:146,88,0,0 -Example1_ref 9486 . T TCTG . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:137,87,1,0 0/0:.:226:224:1:0.44%:137,87,1,0 -Example1_ref 9487 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:136,87,0,0 0/0:.:223:223:0:0%:136,87,0,0 -Example1_ref 9488 . C . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:134,86,0,0 0/0:.:220:220:0:0%:134,86,0,0 -Example1_ref 9489 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:136,87,0,0 0/0:.:223:223:0:0%:136,87,0,0 -Example1_ref 9490 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:135,87,0,0 0/0:.:222:222:0:0%:135,87,0,0 -Example1_ref 9491 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:133,87,0,0 0/0:.:220:220:0:0%:133,87,0,0 -Example1_ref 9492 . C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:138,85,0,0 0/0:.:223:223:0:0%:138,85,0,0 -Example1_ref 9493 . T A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:218:1:0.46%:137,81,1,0 0/0:.:220:218:1:0.46%:137,81,1,0 -Example1_ref 9494 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:134,85,0,0 0/0:.:219:219:0:0%:134,85,0,0 -Example1_ref 9495 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:135,84,0,0 0/0:.:219:219:0:0%:135,84,0,0 -Example1_ref 9496 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:134,87,0,0 0/0:.:221:221:0:0%:134,87,0,0 -Example1_ref 9497 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:130,87,0,0 0/0:.:217:217:0:0%:130,87,0,0 -Example1_ref 9498 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:133,90,0,0 0/0:.:223:223:0:0%:133,90,0,0 -Example1_ref 9499 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:135,87,0,0 0/0:.:222:222:0:0%:135,87,0,0 -Example1_ref 9500 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:131,85,0,0 0/0:.:216:216:0:0%:131,85,0,0 -Example1_ref 9501 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:129,87,0,0 0/0:.:216:216:0:0%:129,87,0,0 -Example1_ref 9502 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:133,88,0,0 0/0:.:221:221:0:0%:133,88,0,0 -Example1_ref 9503 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:136,85,0,0 0/0:.:221:221:0:0%:136,85,0,0 -Example1_ref 9504 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:138,86,0,0 0/0:.:224:224:0:0%:138,86,0,0 -Example1_ref 9505 . C T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:136,83,0,1 0/0:.:220:219:1:0.45%:136,83,0,1 -Example1_ref 9506 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:136,85,0,0 0/0:.:221:221:0:0%:136,85,0,0 -Example1_ref 9507 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:130,86,0,0 0/0:.:216:216:0:0%:130,86,0,0 -Example1_ref 9508 . A T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:132,85,1,0 0/0:.:218:217:1:0.46%:132,85,1,0 -Example1_ref 9509 . C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:135,86,0,0 0/0:.:221:221:0:0%:135,86,0,0 -Example1_ref 9510 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:137,89,0,0 0/0:.:226:226:0:0%:137,89,0,0 -Example1_ref 9511 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:138,91,0,0 0/0:.:229:229:0:0%:138,91,0,0 -Example1_ref 9512 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:142,92,0,0 0/0:.:234:234:0:0%:142,92,0,0 -Example1_ref 9513 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:138,93,0,0 0/0:.:231:231:0:0%:138,93,0,0 -Example1_ref 9514 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:141,92,0,0 0/0:.:233:233:0:0%:141,92,0,0 -Example1_ref 9515 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:136,92,0,0 0/0:.:228:228:0:0%:136,92,0,0 -Example1_ref 9516 . G . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:137,89,0,0 0/0:.:226:226:0:0%:137,89,0,0 -Example1_ref 9517 . G T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:136,87,1,0 0/0:.:224:223:1:0.45%:136,87,1,0 -Example1_ref 9518 . G A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:136,89,0,1 0/0:.:226:225:1:0.44%:136,89,0,1 -Example1_ref 9519 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:138,91,0,0 0/0:.:229:229:0:0%:138,91,0,0 -Example1_ref 9520 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:142,89,0,0 0/0:.:231:231:0:0%:142,89,0,0 -Example1_ref 9521 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:139,86,0,0 0/0:.:225:225:0:0%:139,86,0,0 -Example1_ref 9522 . C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:141,85,0,0 0/0:.:226:226:0:0%:141,85,0,0 -Example1_ref 9523 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:138,87,0,0 0/0:.:225:225:0:0%:138,87,0,0 -Example1_ref 9524 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:157,91,0,0 0/0:.:248:248:0:0%:157,91,0,0 -Example1_ref 9525 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:158,92,0,0 0/0:.:250:250:0:0%:158,92,0,0 -Example1_ref 9526 . C G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:166,93,1,0 0/0:.:260:259:1:0.38%:166,93,1,0 -Example1_ref 9527 . T C . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:166,96,1,0 0/0:.:263:262:1:0.38%:166,96,1,0 -Example1_ref 9528 . T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:0:0%:166,96,0,0 0/0:.:263:262:0:0%:166,96,0,0 -Example1_ref 9529 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:164,97,0,0 0/0:.:261:261:0:0%:164,97,0,0 -Example1_ref 9530 . A . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:168,97,0,0 0/0:.:265:265:0:0%:168,97,0,0 -Example1_ref 9531 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:168,102,0,0 0/0:.:270:270:0:0%:168,102,0,0 -Example1_ref 9532 . T C . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:169,98,1,0 0/0:.:268:267:1:0.37%:169,98,1,0 -Example1_ref 9533 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:169,93,0,0 0/0:.:262:262:0:0%:169,93,0,0 -Example1_ref 9534 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:168,94,0,0 0/0:.:262:262:0:0%:168,94,0,0 -Example1_ref 9535 . T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:169,97,0,0 0/0:.:266:266:0:0%:169,97,0,0 -Example1_ref 9536 . G . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:166,97,0,0 0/0:.:263:263:0:0%:166,97,0,0 -Example1_ref 9537 . T C . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:171,98,1,0 0/0:.:270:269:1:0.37%:171,98,1,0 -Example1_ref 9538 . G . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:169,97,0,0 0/0:.:266:266:0:0%:169,97,0,0 -Example1_ref 9539 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:173,99,0,0 0/0:.:272:272:0:0%:173,99,0,0 -Example1_ref 9540 . T . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:172,101,0,0 0/0:.:273:273:0:0%:172,101,0,0 -Example1_ref 9541 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:177,101,0,0 0/0:.:278:278:0:0%:177,101,0,0 -Example1_ref 9542 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:176,98,0,0 0/0:.:274:274:0:0%:176,98,0,0 -Example1_ref 9543 . C . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:174,97,0,0 0/0:.:271:271:0:0%:174,97,0,0 -Example1_ref 9544 . T . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:176,100,0,0 0/0:.:276:276:0:0%:176,100,0,0 -Example1_ref 9545 . G . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:177,99,0,0 0/0:.:276:276:0:0%:177,99,0,0 -Example1_ref 9546 . A . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:172,100,0,0 0/0:.:272:272:0:0%:172,100,0,0 -Example1_ref 9547 . G T . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:176,99,1,0 0/0:.:276:275:1:0.36%:176,99,1,0 -Example1_ref 9548 . ATG A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:171,103,0,1 0/0:.:275:274:1:0.36%:171,103,0,1 -Example1_ref 9549 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:175,104,0,0 0/0:.:280:279:0:0%:175,104,0,0 -Example1_ref 9550 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:0:0%:179,114,0,0 0/0:.:294:293:0:0%:179,114,0,0 -Example1_ref 9551 . G T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:178,114,1,0 0/0:.:293:292:1:0.34%:178,114,1,0 -Example1_ref 9552 . A ACAG . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:177,121,0,1 0/0:.:300:298:1:0.33%:177,121,0,1 -Example1_ref 9553 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:174,121,0,0 0/0:.:295:295:0:0%:174,121,0,0 -Example1_ref 9554 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:177,126,0,0 0/0:.:303:303:0:0%:177,126,0,0 -Example1_ref 9555 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:181,126,0,0 0/0:.:307:307:0:0%:181,126,0,0 -Example1_ref 9556 . G A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:177,124,0,1 0/0:.:302:301:1:0.33%:177,124,0,1 -Example1_ref 9557 . A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:178,128,0,0 0/0:.:306:306:0:0%:178,128,0,0 -Example1_ref 9558 . T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:181,131,0,0 0/0:.:312:312:0:0%:181,131,0,0 -Example1_ref 9559 . ATTT A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:181,132,0,1 0/0:.:314:313:1:0.32%:181,132,0,1 -Example1_ref 9560 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:178,128,0,0 0/0:.:307:306:0:0%:178,128,0,0 -Example1_ref 9561 . T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:182,129,0,0 0/0:.:312:311:0:0%:182,129,0,0 -Example1_ref 9562 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:0:0%:177,132,0,0 0/0:.:310:309:0:0%:177,132,0,0 -Example1_ref 9563 . G T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:173,132,1,0 0/0:.:306:305:1:0.33%:173,132,1,0 -Example1_ref 9564 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:176,132,0,0 0/0:.:308:308:0:0%:176,132,0,0 -Example1_ref 9565 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:172,135,0,0 0/0:.:307:307:0:0%:172,135,0,0 -Example1_ref 9566 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:173,132,0,0 0/0:.:305:305:0:0%:173,132,0,0 -Example1_ref 9567 . C A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:176,133,0,1 0/0:.:310:309:1:0.32%:176,133,0,1 -Example1_ref 9568 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:174,135,0,0 0/0:.:309:309:0:0%:174,135,0,0 -Example1_ref 9569 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:175,135,0,0 0/0:.:310:310:0:0%:175,135,0,0 -Example1_ref 9570 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:170,134,0,0 0/0:.:304:304:0:0%:170,134,0,0 -Example1_ref 9571 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:168,133,0,0 0/0:.:301:301:0:0%:168,133,0,0 -Example1_ref 9572 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:165,132,0,0 0/0:.:297:297:0:0%:165,132,0,0 -Example1_ref 9573 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:164,130,0,0 0/0:.:294:294:0:0%:164,130,0,0 -Example1_ref 9574 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:167,128,0,0 0/0:.:295:295:0:0%:167,128,0,0 -Example1_ref 9575 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:167,124,0,0 0/0:.:291:291:0:0%:167,124,0,0 -Example1_ref 9576 . C . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:165,122,0,0 0/0:.:287:287:0:0%:165,122,0,0 -Example1_ref 9577 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:163,130,0,0 0/0:.:293:293:0:0%:163,130,0,0 -Example1_ref 9578 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:160,131,0,0 0/0:.:291:291:0:0%:160,131,0,0 -Example1_ref 9579 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:162,131,0,0 0/0:.:293:293:0:0%:162,131,0,0 -Example1_ref 9580 . T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:165,129,0,0 0/0:.:294:294:0:0%:165,129,0,0 -Example1_ref 9581 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:165,130,0,0 0/0:.:295:295:0:0%:165,130,0,0 -Example1_ref 9582 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:161,128,0,0 0/0:.:289:289:0:0%:161,128,0,0 -Example1_ref 9583 . G . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:158,127,0,0 0/0:.:285:285:0:0%:158,127,0,0 -Example1_ref 9584 . G . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:155,134,0,0 0/0:.:289:289:0:0%:155,134,0,0 -Example1_ref 9585 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:155,137,0,0 0/0:.:292:292:0:0%:155,137,0,0 -Example1_ref 9586 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:158,141,0,0 0/0:.:299:299:0:0%:158,141,0,0 -Example1_ref 9587 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:159,136,0,0 0/0:.:295:295:0:0%:159,136,0,0 -Example1_ref 9588 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:157,139,0,0 0/0:.:296:296:0:0%:157,139,0,0 -Example1_ref 9589 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:160,141,0,0 0/0:.:301:301:0:0%:160,141,0,0 -Example1_ref 9590 . C . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:158,142,0,0 0/0:.:300:300:0:0%:158,142,0,0 -Example1_ref 9591 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:157,143,0,0 0/0:.:300:300:0:0%:157,143,0,0 -Example1_ref 9592 . G T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:155,137,1,0 0/0:.:293:292:1:0.34%:155,137,1,0 -Example1_ref 9593 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:153,140,0,0 0/0:.:293:293:0:0%:153,140,0,0 -Example1_ref 9594 . G GC . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:293:2:0.68%:154,139,2,0 0/0:.:296:293:2:0.68%:154,139,2,0 -Example1_ref 9595 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:160,143,0,0 0/0:.:303:303:0:0%:160,143,0,0 -Example1_ref 9596 . G A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:159,142,0,1 0/0:.:302:301:1:0.33%:159,142,0,1 -Example1_ref 9597 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:159,148,0,0 0/0:.:307:307:0:0%:159,148,0,0 -Example1_ref 9598 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:163,148,0,0 0/0:.:312:311:0:0%:163,148,0,0 -Example1_ref 9599 . G . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:154,146,0,0 0/0:.:300:300:0:0%:154,146,0,0 -Example1_ref 9600 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:151,149,0,0 0/0:.:300:300:0:0%:151,149,0,0 -Example1_ref 9601 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:156,149,0,0 0/0:.:305:305:0:0%:156,149,0,0 -Example1_ref 9602 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:156,148,0,0 0/0:.:304:304:0:0%:156,148,0,0 -Example1_ref 9603 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:156,152,0,0 0/0:.:308:308:0:0%:156,152,0,0 -Example1_ref 9604 . C . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:156,148,0,0 0/0:.:304:304:0:0%:156,148,0,0 -Example1_ref 9605 . A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:157,149,0,0 0/0:.:306:306:0:0%:157,149,0,0 -Example1_ref 9606 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:156,149,0,0 0/0:.:305:305:0:0%:156,149,0,0 -Example1_ref 9607 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:156,145,0,0 0/0:.:301:301:0:0%:156,145,0,0 -Example1_ref 9608 . G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:154,148,0,0 0/0:.:302:302:0:0%:154,148,0,0 -Example1_ref 9609 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:153,147,0,0 0/0:.:300:300:0:0%:153,147,0,0 -Example1_ref 9610 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:155,148,0,0 0/0:.:303:303:0:0%:155,148,0,0 -Example1_ref 9611 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:153,151,0,0 0/0:.:304:304:0:0%:153,151,0,0 -Example1_ref 9612 . A G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:152,148,0,1 0/0:.:301:300:1:0.33%:152,148,0,1 -Example1_ref 9613 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:154,148,0,0 0/0:.:302:302:0:0%:154,148,0,0 -Example1_ref 9614 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:150,149,0,0 0/0:.:299:299:0:0%:150,149,0,0 -Example1_ref 9615 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:151,150,0,0 0/0:.:301:301:0:0%:151,150,0,0 -Example1_ref 9616 . C . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:152,151,0,0 0/0:.:304:303:0:0%:152,151,0,0 -Example1_ref 9617 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:152,155,0,0 0/0:.:307:307:0:0%:152,155,0,0 -Example1_ref 9618 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:153,156,0,0 0/0:.:309:309:0:0%:153,156,0,0 -Example1_ref 9619 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:308:308:0:0%:153,155,0,0 -Example1_ref 9620 . G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:148,153,0,0 0/0:.:301:301:0:0%:148,153,0,0 -Example1_ref 9621 . A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:150,156,0,0 0/0:.:306:306:0:0%:150,156,0,0 -Example1_ref 9622 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:150,157,0,0 0/0:.:307:307:0:0%:150,157,0,0 -Example1_ref 9623 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:144,154,0,0 0/0:.:298:298:0:0%:144,154,0,0 -Example1_ref 9624 . T TCTG . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:145,147,1,0 0/0:.:293:292:1:0.34%:145,147,1,0 -Example1_ref 9625 . T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:144,150,0,0 0/0:.:294:294:0:0%:144,150,0,0 -Example1_ref 9626 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:144,149,0,0 0/0:.:293:293:0:0%:144,149,0,0 -Example1_ref 9627 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:144,152,0,0 0/0:.:296:296:0:0%:144,152,0,0 -Example1_ref 9628 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:145,150,0,0 0/0:.:295:295:0:0%:145,150,0,0 -Example1_ref 9629 . G T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:143,155,1,0 0/0:.:299:298:1:0.33%:143,155,1,0 -Example1_ref 9630 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:0:0%:143,161,0,0 0/0:.:305:304:0:0%:143,161,0,0 -Example1_ref 9631 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:0:0%:145,162,0,0 0/0:.:308:307:0:0%:145,162,0,0 -Example1_ref 9632 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:144,162,0,0 0/0:.:307:306:0:0%:144,162,0,0 -Example1_ref 9633 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:141,163,0,0 0/0:.:304:304:0:0%:141,163,0,0 -Example1_ref 9634 . A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:145,161,0,0 0/0:.:306:306:0:0%:145,161,0,0 -Example1_ref 9635 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:148,158,0,0 0/0:.:307:306:0:0%:148,158,0,0 -Example1_ref 9636 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:144,161,0,0 0/0:.:305:305:0:0%:144,161,0,0 -Example1_ref 9637 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:147,163,0,0 0/0:.:310:310:0:0%:147,163,0,0 -Example1_ref 9638 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:151,167,0,0 0/0:.:318:318:0:0%:151,167,0,0 -Example1_ref 9639 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:148,161,0,0 0/0:.:309:309:0:0%:148,161,0,0 -Example1_ref 9640 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:149,166,0,0 0/0:.:315:315:0:0%:149,166,0,0 -Example1_ref 9641 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:144,166,0,0 0/0:.:310:310:0:0%:144,166,0,0 -Example1_ref 9642 . T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:146,167,0,0 0/0:.:313:313:0:0%:146,167,0,0 -Example1_ref 9643 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:147,152,0,0 0/0:.:299:299:0:0%:147,152,0,0 -Example1_ref 9644 . G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:142,153,0,0 0/0:.:295:295:0:0%:142,153,0,0 -Example1_ref 9645 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:140,151,0,0 0/0:.:291:291:0:0%:140,151,0,0 -Example1_ref 9646 . T . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:142,150,0,0 0/0:.:292:292:0:0%:142,150,0,0 -Example1_ref 9647 . G A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:134,150,0,1 0/0:.:285:284:1:0.35%:134,150,0,1 -Example1_ref 9648 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:135,150,0,0 0/0:.:285:285:0:0%:135,150,0,0 -Example1_ref 9649 . A G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:135,151,0,1 0/0:.:287:286:1:0.35%:135,151,0,1 -Example1_ref 9650 . A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:132,151,0,0 0/0:.:283:283:0:0%:132,151,0,0 -Example1_ref 9651 . T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:134,149,0,0 0/0:.:283:283:0:0%:134,149,0,0 -Example1_ref 9652 . A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:132,151,0,0 0/0:.:283:283:0:0%:132,151,0,0 -Example1_ref 9653 . G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:131,150,0,0 0/0:.:281:281:0:0%:131,150,0,0 -Example1_ref 9654 . C . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:132,146,0,0 0/0:.:278:278:0:0%:132,146,0,0 -Example1_ref 9655 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:133,146,0,0 0/0:.:279:279:0:0%:133,146,0,0 -Example1_ref 9656 . G T . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:131,144,0,1 0/0:.:276:275:1:0.36%:131,144,0,1 -Example1_ref 9657 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:129,141,0,0 0/0:.:270:270:0:0%:129,141,0,0 -Example1_ref 9658 . G . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:125,140,0,0 0/0:.:265:265:0:0%:125,140,0,0 -Example1_ref 9659 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:120,142,0,0 0/0:.:262:262:0:0%:120,142,0,0 -Example1_ref 9660 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:123,139,0,0 0/0:.:262:262:0:0%:123,139,0,0 -Example1_ref 9661 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:120,140,0,0 0/0:.:260:260:0:0%:120,140,0,0 -Example1_ref 9662 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:121,138,0,0 0/0:.:259:259:0:0%:121,138,0,0 -Example1_ref 9663 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:122,138,0,0 0/0:.:260:260:0:0%:122,138,0,0 -Example1_ref 9664 . C . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:118,138,0,0 0/0:.:256:256:0:0%:118,138,0,0 -Example1_ref 9665 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:119,141,0,0 0/0:.:260:260:0:0%:119,141,0,0 -Example1_ref 9666 . CT C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=6.8823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:255:2:0.78%:117,138,1,1 0/0:.:258:255:2:0.78%:117,138,1,1 -Example1_ref 9667 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:119,136,0,0 0/0:.:255:255:0:0%:119,136,0,0 -Example1_ref 9668 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:118,139,0,0 0/0:.:257:257:0:0%:118,139,0,0 -Example1_ref 9669 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:115,137,0,0 0/0:.:252:252:0:0%:115,137,0,0 -Example1_ref 9670 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:111,140,0,0 0/0:.:251:251:0:0%:111,140,0,0 -Example1_ref 9671 . T G . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:113,143,0,1 0/0:.:257:256:1:0.39%:113,143,0,1 -Example1_ref 9672 . T C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:111,141,0,1 0/0:.:253:252:1:0.4%:111,141,0,1 -Example1_ref 9673 . T A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:113,144,0,1 0/0:.:258:257:1:0.39%:113,144,0,1 -Example1_ref 9674 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:112,147,0,0 0/0:.:259:259:0:0%:112,147,0,0 -Example1_ref 9675 . G . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:110,147,0,0 0/0:.:257:257:0:0%:110,147,0,0 -Example1_ref 9676 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:109,144,0,0 0/0:.:253:253:0:0%:109,144,0,0 -Example1_ref 9677 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:108,146,0,0 0/0:.:254:254:0:0%:108,146,0,0 -Example1_ref 9678 . C . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:114,140,0,0 0/0:.:254:254:0:0%:114,140,0,0 -Example1_ref 9679 . C CAG . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:105,140,0,1 0/0:.:246:245:1:0.41%:105,140,0,1 -Example1_ref 9680 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:112,137,0,0 0/0:.:249:249:0:0%:112,137,0,0 -Example1_ref 9681 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:113,145,0,0 0/0:.:258:258:0:0%:113,145,0,0 -Example1_ref 9682 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:110,145,0,0 0/0:.:255:255:0:0%:110,145,0,0 -Example1_ref 9683 . G T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=6.8823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:255:2:0.78%:108,147,2,0 0/0:.:257:255:2:0.78%:108,147,2,0 -Example1_ref 9684 . G T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=6.8827E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:242:2:0.82%:101,141,2,0 0/0:.:244:242:2:0.82%:101,141,2,0 -Example1_ref 9685 . G T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:98,146,1,0 0/0:.:245:244:1:0.41%:98,146,1,0 -Example1_ref 9686 . C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:111,144,0,0 0/0:.:255:255:0:0%:111,144,0,0 -Example1_ref 9687 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:114,144,0,0 0/0:.:258:258:0:0%:114,144,0,0 -Example1_ref 9688 . T . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:111,142,0,0 0/0:.:253:253:0:0%:111,142,0,0 -Example1_ref 9689 . C A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:109,138,0,1 0/0:.:248:247:1:0.4%:109,138,0,1 -Example1_ref 9690 . C . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:112,137,0,0 0/0:.:249:249:0:0%:112,137,0,0 -Example1_ref 9691 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:112,138,0,0 0/0:.:250:250:0:0%:112,138,0,0 -Example1_ref 9692 . C . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:114,137,0,0 0/0:.:251:251:0:0%:114,137,0,0 -Example1_ref 9693 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:113,140,0,0 0/0:.:253:253:0:0%:113,140,0,0 -Example1_ref 9694 . A T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:113,144,1,0 0/0:.:258:257:1:0.39%:113,144,1,0 -Example1_ref 9695 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:117,141,0,0 0/0:.:258:258:0:0%:117,141,0,0 -Example1_ref 9696 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:116,144,0,0 0/0:.:260:260:0:0%:116,144,0,0 -Example1_ref 9697 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:113,140,0,0 0/0:.:253:253:0:0%:113,140,0,0 -Example1_ref 9698 . G T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:103,143,1,0 0/0:.:247:246:1:0.4%:103,143,1,0 -Example1_ref 9699 . A T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:102,133,1,0 0/0:.:236:235:1:0.42%:102,133,1,0 -Example1_ref 9700 . G . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:107,129,0,0 0/0:.:236:236:0:0%:107,129,0,0 -Example1_ref 9701 . G T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:100,127,1,0 0/0:.:228:227:1:0.44%:100,127,1,0 -Example1_ref 9702 . C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:104,127,0,0 0/0:.:231:231:0:0%:104,127,0,0 -Example1_ref 9703 . T TGTCTCTTATAC . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:105,126,1,0 0/0:.:232:231:1:0.43%:105,126,1,0 -Example1_ref 9704 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:105,128,0,0 0/0:.:233:233:0:0%:105,128,0,0 -Example1_ref 9705 . G T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:104,127,0,1 0/0:.:232:231:1:0.43%:104,127,0,1 -Example1_ref 9706 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:105,125,0,0 0/0:.:230:230:0:0%:105,125,0,0 -Example1_ref 9707 . A ATCTG . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:102,128,1,0 0/0:.:231:230:1:0.43%:102,128,1,0 -Example1_ref 9708 . T TC . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:103,123,1,0 0/0:.:227:226:1:0.44%:103,123,1,0 -Example1_ref 9709 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:101,122,0,0 0/0:.:223:223:0:0%:101,122,0,0 -Example1_ref 9710 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:101,124,0,0 0/0:.:225:225:0:0%:101,124,0,0 -Example1_ref 9711 . C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:98,120,0,0 0/0:.:218:218:0:0%:98,120,0,0 -Example1_ref 9712 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:101,123,0,0 0/0:.:224:224:0:0%:101,123,0,0 -Example1_ref 9713 . G A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:90,121,1,0 0/0:.:212:211:1:0.47%:90,121,1,0 -Example1_ref 9714 . C A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:79,115,0,1 0/0:.:195:194:1:0.51%:79,115,0,1 -Example1_ref 9715 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:81,120,0,0 0/0:.:201:201:0:0%:81,120,0,0 -Example1_ref 9716 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:77,120,0,0 0/0:.:197:197:0:0%:77,120,0,0 -Example1_ref 9717 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:199:199:0:0%:79,120,0,0 -Example1_ref 9718 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:79,119,0,0 0/0:.:198:198:0:0%:79,119,0,0 -Example1_ref 9719 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:76,121,0,0 0/0:.:197:197:0:0%:76,121,0,0 -Example1_ref 9720 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:77,121,0,0 0/0:.:199:198:0:0%:77,121,0,0 -Example1_ref 9721 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:78,119,0,0 0/0:.:197:197:0:0%:78,119,0,0 -Example1_ref 9722 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:76,122,0,0 0/0:.:199:198:0:0%:76,122,0,0 -Example1_ref 9723 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:78,121,0,0 0/0:.:199:199:0:0%:78,121,0,0 -Example1_ref 9724 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:79,123,0,0 0/0:.:202:202:0:0%:79,123,0,0 -Example1_ref 9725 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:78,124,0,0 0/0:.:202:202:0:0%:78,124,0,0 -Example1_ref 9726 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:73,123,0,0 0/0:.:196:196:0:0%:73,123,0,0 -Example1_ref 9727 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:71,124,0,0 0/0:.:195:195:0:0%:71,124,0,0 -Example1_ref 9728 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:75,125,0,0 0/0:.:200:200:0:0%:75,125,0,0 -Example1_ref 9729 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:72,125,0,0 0/0:.:197:197:0:0%:72,125,0,0 -Example1_ref 9730 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:75,124,0,0 0/0:.:199:199:0:0%:75,124,0,0 -Example1_ref 9731 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:68,124,0,0 0/0:.:192:192:0:0%:68,124,0,0 -Example1_ref 9732 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:68,124,0,0 0/0:.:192:192:0:0%:68,124,0,0 -Example1_ref 9733 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:70,124,0,0 0/0:.:194:194:0:0%:70,124,0,0 -Example1_ref 9734 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:69,124,0,0 0/0:.:193:193:0:0%:69,124,0,0 -Example1_ref 9735 . T A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:191:1:0.52%:69,122,0,1 0/0:.:193:191:1:0.52%:69,122,0,1 -Example1_ref 9736 . GT G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=6.8848E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:190:2:1.04%:66,124,2,0 0/0:.:192:190:2:1.04%:66,124,2,0 -Example1_ref 9737 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:187:0:0%:68,119,0,0 0/0:.:188:187:0:0%:68,119,0,0 -Example1_ref 9738 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:70,118,0,0 0/0:.:188:188:0:0%:70,118,0,0 -Example1_ref 9739 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:67,110,0,0 0/0:.:177:177:0:0%:67,110,0,0 -Example1_ref 9740 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:68,107,0,0 0/0:.:175:175:0:0%:68,107,0,0 -Example1_ref 9741 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:66,107,0,0 0/0:.:173:173:0:0%:66,107,0,0 -Example1_ref 9742 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:63,101,0,0 0/0:.:164:164:0:0%:63,101,0,0 -Example1_ref 9743 . G GC . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:61,102,1,0 0/0:.:164:163:1:0.61%:61,102,1,0 -Example1_ref 9744 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:64,94,0,0 0/0:.:158:158:0:0%:64,94,0,0 -Example1_ref 9745 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:62,94,0,0 0/0:.:156:156:0:0%:62,94,0,0 -Example1_ref 9746 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:150:150:0:0%:62,88,0,0 -Example1_ref 9747 . A C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:64,83,0,1 0/0:.:148:147:1:0.68%:64,83,0,1 -Example1_ref 9748 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:62,86,0,0 0/0:.:148:148:0:0%:62,86,0,0 -Example1_ref 9749 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:63,85,0,0 0/0:.:148:148:0:0%:63,85,0,0 -Example1_ref 9750 . A T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:63,85,1,0 0/0:.:149:148:1:0.67%:63,85,1,0 -Example1_ref 9751 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:61,88,0,0 0/0:.:149:149:0:0%:61,88,0,0 -Example1_ref 9752 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:66,87,0,0 0/0:.:153:153:0:0%:66,87,0,0 -Example1_ref 9753 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:66,86,0,0 0/0:.:152:152:0:0%:66,86,0,0 -Example1_ref 9754 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:63,88,0,0 0/0:.:151:151:0:0%:63,88,0,0 -Example1_ref 9755 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:63,88,0,0 0/0:.:151:151:0:0%:63,88,0,0 -Example1_ref 9756 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:62,89,0,0 0/0:.:151:151:0:0%:62,89,0,0 -Example1_ref 9757 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:64,89,0,0 0/0:.:153:153:0:0%:64,89,0,0 -Example1_ref 9758 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:63,89,0,0 0/0:.:152:152:0:0%:63,89,0,0 -Example1_ref 9759 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:62,89,0,0 0/0:.:151:151:0:0%:62,89,0,0 -Example1_ref 9760 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:61,88,0,0 0/0:.:149:149:0:0%:61,88,0,0 -Example1_ref 9761 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:60,88,0,0 0/0:.:148:148:0:0%:60,88,0,0 -Example1_ref 9762 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:59,90,0,0 0/0:.:149:149:0:0%:59,90,0,0 -Example1_ref 9763 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:150:150:0:0%:62,88,0,0 -Example1_ref 9764 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:61,88,0,0 0/0:.:149:149:0:0%:61,88,0,0 -Example1_ref 9765 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:63,91,0,0 0/0:.:154:154:0:0%:63,91,0,0 -Example1_ref 9766 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:64,87,0,0 0/0:.:151:151:0:0%:64,87,0,0 -Example1_ref 9767 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:67,90,0,0 0/0:.:157:157:0:0%:67,90,0,0 -Example1_ref 9768 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:65,85,0,0 0/0:.:150:150:0:0%:65,85,0,0 -Example1_ref 9769 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:68,90,0,0 0/0:.:158:158:0:0%:68,90,0,0 -Example1_ref 9770 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:69,91,0,0 0/0:.:160:160:0:0%:69,91,0,0 -Example1_ref 9771 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:67,89,0,0 0/0:.:156:156:0:0%:67,89,0,0 -Example1_ref 9772 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:68,89,0,0 0/0:.:157:157:0:0%:68,89,0,0 -Example1_ref 9773 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:67,88,0,0 0/0:.:155:155:0:0%:67,88,0,0 -Example1_ref 9774 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:67,80,0,0 0/0:.:147:147:0:0%:67,80,0,0 -Example1_ref 9775 . A AC . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:66,78,1,0 0/0:.:145:144:1:0.69%:66,78,1,0 -Example1_ref 9776 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:66,73,0,0 0/0:.:139:139:0:0%:66,73,0,0 -Example1_ref 9777 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:136:136:0:0%:63,73,0,0 -Example1_ref 9778 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:65,69,0,0 0/0:.:134:134:0:0%:65,69,0,0 -Example1_ref 9779 . C CTCT . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:59,66,1,0 0/0:.:126:125:1:0.79%:59,66,1,0 -Example1_ref 9780 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:64,66,0,0 0/0:.:131:130:0:0%:64,66,0,0 -Example1_ref 9781 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:66,66,0,0 0/0:.:132:132:0:0%:66,66,0,0 -Example1_ref 9782 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:129:129:0:0%:63,66,0,0 -Example1_ref 9783 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:64,66,0,0 0/0:.:130:130:0:0%:64,66,0,0 -Example1_ref 9784 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:63,67,0,0 0/0:.:130:130:0:0%:63,67,0,0 -Example1_ref 9785 . AT A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:63,67,1,0 0/0:.:131:130:1:0.76%:63,67,1,0 -Example1_ref 9786 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:129:129:0:0%:63,66,0,0 -Example1_ref 9787 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:129:129:0:0%:63,66,0,0 -Example1_ref 9788 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:59,65,0,0 0/0:.:124:124:0:0%:59,65,0,0 -Example1_ref 9789 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:59,63,0,0 0/0:.:122:122:0:0%:59,63,0,0 -Example1_ref 9790 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:61,65,0,0 0/0:.:126:126:0:0%:61,65,0,0 -Example1_ref 9791 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:59,61,0,0 0/0:.:120:120:0:0%:59,61,0,0 -Example1_ref 9792 . G A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.5102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:61,61,1,0 0/0:.:123:122:1:0.81%:61,61,1,0 -Example1_ref 9793 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:125:125:0:0%:62,63,0,0 -Example1_ref 9794 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:124:124:0:0%:61,63,0,0 -Example1_ref 9795 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:62,62,0,0 0/0:.:124:124:0:0%:62,62,0,0 -Example1_ref 9796 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:125:125:0:0%:62,63,0,0 -Example1_ref 9797 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:63,64,0,0 0/0:.:127:127:0:0%:63,64,0,0 -Example1_ref 9798 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:60,63,0,0 0/0:.:123:123:0:0%:60,63,0,0 -Example1_ref 9799 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:125:125:0:0%:62,63,0,0 -Example1_ref 9800 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:60,64,0,0 0/0:.:124:124:0:0%:60,64,0,0 -Example1_ref 9801 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:124:124:0:0%:61,63,0,0 -Example1_ref 9802 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:64,62,0,0 0/0:.:126:126:0:0%:64,62,0,0 -Example1_ref 9803 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:66,62,0,0 0/0:.:128:128:0:0%:66,62,0,0 -Example1_ref 9804 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:65,64,0,0 0/0:.:129:129:0:0%:65,64,0,0 -Example1_ref 9805 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:66,64,0,0 0/0:.:130:130:0:0%:66,64,0,0 -Example1_ref 9806 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:65,62,0,0 0/0:.:127:127:0:0%:65,62,0,0 -Example1_ref 9807 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:65,66,0,0 0/0:.:131:131:0:0%:65,66,0,0 -Example1_ref 9808 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:64,66,0,0 0/0:.:131:130:0:0%:64,66,0,0 -Example1_ref 9809 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:64,64,0,0 0/0:.:128:128:0:0%:64,64,0,0 -Example1_ref 9810 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:137:137:0:0%:73,64,0,0 -Example1_ref 9811 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:72,62,0,0 0/0:.:134:134:0:0%:72,62,0,0 -Example1_ref 9812 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:133:133:0:0%:71,62,0,0 -Example1_ref 9813 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:76,63,0,0 0/0:.:139:139:0:0%:76,63,0,0 -Example1_ref 9814 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:75,63,0,0 0/0:.:139:138:0:0%:75,63,0,0 -Example1_ref 9815 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:0:0%:77,63,0,0 0/0:.:141:140:0:0%:77,63,0,0 -Example1_ref 9816 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:77,65,0,0 0/0:.:142:142:0:0%:77,65,0,0 -Example1_ref 9817 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:76,66,0,0 0/0:.:142:142:0:0%:76,66,0,0 -Example1_ref 9818 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:71,69,0,0 0/0:.:140:140:0:0%:71,69,0,0 -Example1_ref 9819 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:75,55,0,0 0/0:.:130:130:0:0%:75,55,0,0 -Example1_ref 9820 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:73,55,0,0 0/0:.:128:128:0:0%:73,55,0,0 -Example1_ref 9821 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:76,58,0,0 0/0:.:134:134:0:0%:76,58,0,0 -Example1_ref 9822 . GGC G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:73,53,0,1 0/0:.:127:126:1:0.79%:73,53,0,1 -Example1_ref 9823 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:0:0%:71,54,0,0 0/0:.:126:125:0:0%:71,54,0,0 -Example1_ref 9824 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:71,57,0,0 0/0:.:129:128:0:0%:71,57,0,0 -Example1_ref 9825 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:77,58,0,0 0/0:.:135:135:0:0%:77,58,0,0 -Example1_ref 9826 . T G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:77,57,0,1 0/0:.:135:134:1:0.74%:77,57,0,1 -Example1_ref 9827 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:133:133:0:0%:76,57,0,0 -Example1_ref 9828 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:128:128:0:0%:71,57,0,0 -Example1_ref 9829 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:130:130:0:0%:73,57,0,0 -Example1_ref 9830 . G T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:73,55,0,1 0/0:.:129:128:1:0.78%:73,55,0,1 -Example1_ref 9831 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:131:131:0:0%:72,59,0,0 -Example1_ref 9832 . A AC . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:73,59,1,0 0/0:.:133:132:1:0.75%:73,59,1,0 -Example1_ref 9833 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:73,60,0,0 0/0:.:133:133:0:0%:73,60,0,0 -Example1_ref 9834 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:74,60,0,0 0/0:.:134:134:0:0%:74,60,0,0 -Example1_ref 9835 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:133:133:0:0%:71,62,0,0 -Example1_ref 9836 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:138:138:0:0%:75,63,0,0 -Example1_ref 9837 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:74,63,0,0 0/0:.:137:137:0:0%:74,63,0,0 -Example1_ref 9838 . G A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:73,61,0,1 0/0:.:135:134:1:0.74%:73,61,0,1 -Example1_ref 9839 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:74,63,0,0 0/0:.:137:137:0:0%:74,63,0,0 -Example1_ref 9840 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:136:136:0:0%:74,62,0,0 -Example1_ref 9841 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:72,62,0,0 0/0:.:134:134:0:0%:72,62,0,0 -Example1_ref 9842 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:77,62,0,0 0/0:.:139:139:0:0%:77,62,0,0 -Example1_ref 9843 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:77,64,0,0 0/0:.:141:141:0:0%:77,64,0,0 -Example1_ref 9844 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:76,65,0,0 0/0:.:141:141:0:0%:76,65,0,0 -Example1_ref 9845 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:76,65,0,0 0/0:.:141:141:0:0%:76,65,0,0 -Example1_ref 9846 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:0:0%:78,64,0,0 0/0:.:143:142:0:0%:78,64,0,0 -Example1_ref 9847 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:81,66,0,0 0/0:.:147:147:0:0%:81,66,0,0 -Example1_ref 9848 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:79,67,0,0 0/0:.:146:146:0:0%:79,67,0,0 -Example1_ref 9849 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:80,66,0,0 0/0:.:146:146:0:0%:80,66,0,0 -Example1_ref 9850 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:82,67,0,0 0/0:.:149:149:0:0%:82,67,0,0 -Example1_ref 9851 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:89,65,0,0 0/0:.:154:154:0:0%:89,65,0,0 -Example1_ref 9852 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:90,65,0,0 0/0:.:155:155:0:0%:90,65,0,0 -Example1_ref 9853 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:92,66,0,0 0/0:.:158:158:0:0%:92,66,0,0 -Example1_ref 9854 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:156:156:0:0%:90,66,0,0 -Example1_ref 9855 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:156:156:0:0%:90,66,0,0 -Example1_ref 9856 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:153:153:0:0%:91,62,0,0 -Example1_ref 9857 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 9858 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 9859 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:95,64,0,0 0/0:.:159:159:0:0%:95,64,0,0 -Example1_ref 9860 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:94,63,0,0 0/0:.:157:157:0:0%:94,63,0,0 -Example1_ref 9861 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:95,61,0,0 0/0:.:156:156:0:0%:95,61,0,0 -Example1_ref 9862 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:95,62,0,0 0/0:.:157:157:0:0%:95,62,0,0 -Example1_ref 9863 . G GCA . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:94,62,0,1 0/0:.:157:156:1:0.64%:94,62,0,1 -Example1_ref 9864 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:94,60,0,0 0/0:.:154:154:0:0%:94,60,0,0 -Example1_ref 9865 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:92,62,0,0 0/0:.:154:154:0:0%:92,62,0,0 -Example1_ref 9866 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:94,60,0,0 0/0:.:154:154:0:0%:94,60,0,0 -Example1_ref 9867 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:94,64,0,0 0/0:.:158:158:0:0%:94,64,0,0 -Example1_ref 9868 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:93,65,0,0 0/0:.:158:158:0:0%:93,65,0,0 -Example1_ref 9869 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 9870 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:93,66,0,0 0/0:.:159:159:0:0%:93,66,0,0 -Example1_ref 9871 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:96,66,0,0 0/0:.:162:162:0:0%:96,66,0,0 -Example1_ref 9872 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:97,67,0,0 0/0:.:164:164:0:0%:97,67,0,0 -Example1_ref 9873 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 9874 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 9875 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:161:161:0:0%:97,64,0,0 -Example1_ref 9876 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:99,66,0,0 0/0:.:165:165:0:0%:99,66,0,0 -Example1_ref 9877 . CA C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:163:1:0.61%:98,65,1,0 0/0:.:165:163:1:0.61%:98,65,1,0 -Example1_ref 9878 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:100,72,0,0 0/0:.:172:172:0:0%:100,72,0,0 -Example1_ref 9879 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:98,72,0,0 0/0:.:170:170:0:0%:98,72,0,0 -Example1_ref 9880 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:168:168:0:0%:96,72,0,0 -Example1_ref 9881 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:95,70,0,0 0/0:.:165:165:0:0%:95,70,0,0 -Example1_ref 9882 . A AGCTC . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:92,70,1,0 0/0:.:163:162:1:0.61%:92,70,1,0 -Example1_ref 9883 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:167:167:0:0%:93,74,0,0 -Example1_ref 9884 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:91,73,0,0 0/0:.:164:164:0:0%:91,73,0,0 -Example1_ref 9885 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:90,75,0,0 0/0:.:165:165:0:0%:90,75,0,0 -Example1_ref 9886 . T C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=6.8864E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:2:1.2%:92,72,1,1 0/0:.:166:164:2:1.2%:92,72,1,1 -Example1_ref 9887 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:92,76,0,0 0/0:.:168:168:0:0%:92,76,0,0 -Example1_ref 9888 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:92,77,0,0 0/0:.:169:169:0:0%:92,77,0,0 -Example1_ref 9889 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:167:167:0:0%:92,75,0,0 -Example1_ref 9890 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:167:167:0:0%:90,77,0,0 -Example1_ref 9891 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:89,77,0,0 0/0:.:166:166:0:0%:89,77,0,0 -Example1_ref 9892 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:91,78,0,0 0/0:.:169:169:0:0%:91,78,0,0 -Example1_ref 9893 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:93,76,0,0 0/0:.:169:169:0:0%:93,76,0,0 -Example1_ref 9894 . C A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:92,76,1,0 0/0:.:169:168:1:0.59%:92,76,1,0 -Example1_ref 9895 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:0:0%:92,77,0,0 0/0:.:170:169:0:0%:92,77,0,0 -Example1_ref 9896 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:91,86,0,0 0/0:.:177:177:0:0%:91,86,0,0 -Example1_ref 9897 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:92,87,0,0 0/0:.:179:179:0:0%:92,87,0,0 -Example1_ref 9898 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:93,85,0,0 0/0:.:178:178:0:0%:93,85,0,0 -Example1_ref 9899 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:93,86,0,0 0/0:.:179:179:0:0%:93,86,0,0 -Example1_ref 9900 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:0:0%:95,83,0,0 0/0:.:179:178:0:0%:95,83,0,0 -Example1_ref 9901 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:94,84,0,0 0/0:.:178:178:0:0%:94,84,0,0 -Example1_ref 9902 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:93,84,0,0 0/0:.:177:177:0:0%:93,84,0,0 -Example1_ref 9903 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:95,84,0,0 0/0:.:179:179:0:0%:95,84,0,0 -Example1_ref 9904 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:94,88,0,0 0/0:.:182:182:0:0%:94,88,0,0 -Example1_ref 9905 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:96,88,0,0 0/0:.:184:184:0:0%:96,88,0,0 -Example1_ref 9906 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:97,89,0,0 0/0:.:186:186:0:0%:97,89,0,0 -Example1_ref 9907 . A G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:96,89,1,0 0/0:.:186:185:1:0.54%:96,89,1,0 -Example1_ref 9908 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:0:0%:94,88,0,0 0/0:.:183:182:0:0%:94,88,0,0 -Example1_ref 9909 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:0:0%:99,85,0,0 0/0:.:185:184:0:0%:99,85,0,0 -Example1_ref 9910 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:101,84,0,0 0/0:.:185:185:0:0%:101,84,0,0 -Example1_ref 9911 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:98,87,0,0 0/0:.:185:185:0:0%:98,87,0,0 -Example1_ref 9912 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:99,87,0,0 0/0:.:186:186:0:0%:99,87,0,0 -Example1_ref 9913 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:98,87,0,0 0/0:.:185:185:0:0%:98,87,0,0 -Example1_ref 9914 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:98,86,0,0 0/0:.:184:184:0:0%:98,86,0,0 -Example1_ref 9915 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:99,85,0,0 0/0:.:184:184:0:0%:99,85,0,0 -Example1_ref 9916 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:97,84,0,0 0/0:.:181:181:0:0%:97,84,0,0 -Example1_ref 9917 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:96,83,0,0 0/0:.:179:179:0:0%:96,83,0,0 -Example1_ref 9918 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:96,84,0,0 0/0:.:180:180:0:0%:96,84,0,0 -Example1_ref 9919 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:98,82,0,0 0/0:.:180:180:0:0%:98,82,0,0 -Example1_ref 9920 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:97,82,0,0 0/0:.:179:179:0:0%:97,82,0,0 -Example1_ref 9921 . C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:100,83,0,0 0/0:.:183:183:0:0%:100,83,0,0 -Example1_ref 9922 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:99,83,0,0 0/0:.:182:182:0:0%:99,83,0,0 -Example1_ref 9923 . G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:98,83,0,0 0/0:.:181:181:0:0%:98,83,0,0 -Example1_ref 9924 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:101,85,0,0 0/0:.:186:186:0:0%:101,85,0,0 -Example1_ref 9925 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:98,84,0,0 0/0:.:182:182:0:0%:98,84,0,0 -Example1_ref 9926 . G A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:180:1:0.55%:96,84,1,0 0/0:.:182:180:1:0.55%:96,84,1,0 -Example1_ref 9927 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:94,85,0,0 0/0:.:179:179:0:0%:94,85,0,0 -Example1_ref 9928 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:97,87,0,0 0/0:.:184:184:0:0%:97,87,0,0 -Example1_ref 9929 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:100,88,0,0 0/0:.:188:188:0:0%:100,88,0,0 -Example1_ref 9930 . AT A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:98,87,1,0 0/0:.:186:185:1:0.54%:98,87,1,0 -Example1_ref 9931 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:101,86,0,0 0/0:.:187:187:0:0%:101,86,0,0 -Example1_ref 9932 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:106,87,0,0 0/0:.:193:193:0:0%:106,87,0,0 -Example1_ref 9933 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:107,88,0,0 0/0:.:195:195:0:0%:107,88,0,0 -Example1_ref 9934 . C . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:105,84,0,0 0/0:.:189:189:0:0%:105,84,0,0 -Example1_ref 9935 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:101,87,0,0 0/0:.:188:188:0:0%:101,87,0,0 -Example1_ref 9936 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:105,95,0,0 0/0:.:200:200:0:0%:105,95,0,0 -Example1_ref 9937 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:102,96,0,0 0/0:.:198:198:0:0%:102,96,0,0 -Example1_ref 9938 . A AGACAG . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:99,96,0,1 0/0:.:196:195:1:0.51%:99,96,0,1 -Example1_ref 9939 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:108,90,0,0 0/0:.:198:198:0:0%:108,90,0,0 -Example1_ref 9940 . C T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:106,96,1,0 0/0:.:203:202:1:0.49%:106,96,1,0 -Example1_ref 9941 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:107,92,0,0 0/0:.:199:199:0:0%:107,92,0,0 -Example1_ref 9942 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:108,93,0,0 0/0:.:201:201:0:0%:108,93,0,0 -Example1_ref 9943 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:105,96,0,0 0/0:.:201:201:0:0%:105,96,0,0 -Example1_ref 9944 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:109,96,0,0 0/0:.:205:205:0:0%:109,96,0,0 -Example1_ref 9945 . T TAAGAGAC . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:110,94,0,1 0/0:.:205:204:1:0.49%:110,94,0,1 -Example1_ref 9946 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:109,93,0,0 0/0:.:202:202:0:0%:109,93,0,0 -Example1_ref 9947 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:107,92,0,0 0/0:.:199:199:0:0%:107,92,0,0 -Example1_ref 9948 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:106,90,0,0 0/0:.:196:196:0:0%:106,90,0,0 -Example1_ref 9949 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:109,92,0,0 0/0:.:201:201:0:0%:109,92,0,0 -Example1_ref 9950 . A ACTGTC . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:202:1:0.49%:108,94,1,0 0/0:.:204:202:1:0.49%:108,94,1,0 -Example1_ref 9951 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:111,94,0,0 0/0:.:205:205:0:0%:111,94,0,0 -Example1_ref 9952 . A C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:108,94,1,0 0/0:.:203:202:1:0.49%:108,94,1,0 -Example1_ref 9953 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:110,94,0,0 0/0:.:204:204:0:0%:110,94,0,0 -Example1_ref 9954 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:109,95,0,0 0/0:.:204:204:0:0%:109,95,0,0 -Example1_ref 9955 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:104,95,0,0 0/0:.:199:199:0:0%:104,95,0,0 -Example1_ref 9956 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:108,93,0,0 0/0:.:201:201:0:0%:108,93,0,0 -Example1_ref 9957 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:199:199:0:0%:105,94,0,0 -Example1_ref 9958 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:107,94,0,0 0/0:.:201:201:0:0%:107,94,0,0 -Example1_ref 9959 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:199:199:0:0%:105,94,0,0 -Example1_ref 9960 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:106,94,0,0 0/0:.:200:200:0:0%:106,94,0,0 -Example1_ref 9961 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:106,93,0,0 0/0:.:199:199:0:0%:106,93,0,0 -Example1_ref 9962 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:106,94,0,0 0/0:.:200:200:0:0%:106,94,0,0 -Example1_ref 9963 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:104,94,0,0 0/0:.:198:198:0:0%:104,94,0,0 -Example1_ref 9964 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:199:199:0:0%:105,94,0,0 -Example1_ref 9965 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:105,93,0,0 0/0:.:198:198:0:0%:105,93,0,0 -Example1_ref 9966 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:103,90,0,0 0/0:.:193:193:0:0%:103,90,0,0 -Example1_ref 9967 . C . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:103,94,0,0 0/0:.:197:197:0:0%:103,94,0,0 -Example1_ref 9968 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:104,95,0,0 0/0:.:199:199:0:0%:104,95,0,0 -Example1_ref 9969 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:103,94,0,0 0/0:.:197:197:0:0%:103,94,0,0 -Example1_ref 9970 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:105,102,0,0 0/0:.:207:207:0:0%:105,102,0,0 -Example1_ref 9971 . G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:98,102,0,0 0/0:.:200:200:0:0%:98,102,0,0 -Example1_ref 9972 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:203:203:0:0%:100,103,0,0 -Example1_ref 9973 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:102,100,0,0 0/0:.:202:202:0:0%:102,100,0,0 -Example1_ref 9974 . C A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:104,97,0,1 0/0:.:202:201:1:0.5%:104,97,0,1 -Example1_ref 9975 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:203:203:0:0%:100,103,0,0 -Example1_ref 9976 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:102,102,0,0 0/0:.:204:204:0:0%:102,102,0,0 -Example1_ref 9977 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:106,99,0,0 0/0:.:205:205:0:0%:106,99,0,0 -Example1_ref 9978 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:106,104,0,0 0/0:.:210:210:0:0%:106,104,0,0 -Example1_ref 9979 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:106,104,0,0 0/0:.:210:210:0:0%:106,104,0,0 -Example1_ref 9980 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:106,107,0,0 0/0:.:213:213:0:0%:106,107,0,0 -Example1_ref 9981 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:108,108,0,0 0/0:.:216:216:0:0%:108,108,0,0 -Example1_ref 9982 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:108,107,0,0 0/0:.:215:215:0:0%:108,107,0,0 -Example1_ref 9983 . G A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:104,107,0,1 0/0:.:212:211:1:0.47%:104,107,0,1 -Example1_ref 9984 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:105,108,0,0 0/0:.:213:213:0:0%:105,108,0,0 -Example1_ref 9985 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:108,107,0,0 0/0:.:215:215:0:0%:108,107,0,0 -Example1_ref 9986 . G T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:103,104,0,1 0/0:.:208:207:1:0.48%:103,104,0,1 -Example1_ref 9987 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:210:210:0:0%:105,105,0,0 -Example1_ref 9988 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:103,100,0,0 0/0:.:203:203:0:0%:103,100,0,0 -Example1_ref 9989 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:205:205:0:0%:102,103,0,0 -Example1_ref 9990 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:101,104,0,0 0/0:.:205:205:0:0%:101,104,0,0 -Example1_ref 9991 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:104,104,0,0 0/0:.:208:208:0:0%:104,104,0,0 -Example1_ref 9992 . T C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:101,101,1,0 0/0:.:203:202:1:0.49%:101,101,1,0 -Example1_ref 9993 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:203:203:0:0%:100,103,0,0 -Example1_ref 9994 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:205:205:0:0%:102,103,0,0 -Example1_ref 9995 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:101,103,0,0 0/0:.:204:204:0:0%:101,103,0,0 -Example1_ref 9996 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:101,102,0,0 0/0:.:203:203:0:0%:101,102,0,0 -Example1_ref 9997 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:102,98,0,0 0/0:.:200:200:0:0%:102,98,0,0 -Example1_ref 9998 . A ACTG . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:103,99,1,0 0/0:.:203:202:1:0.49%:103,99,1,0 -Example1_ref 9999 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:196:196:0:0%:100,96,0,0 -Example1_ref 10000 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:92,98,0,0 0/0:.:190:190:0:0%:92,98,0,0 -Example1_ref 10001 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:95,99,0,0 0/0:.:194:194:0:0%:95,99,0,0 -Example1_ref 10002 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:96,100,0,0 0/0:.:196:196:0:0%:96,100,0,0 -Example1_ref 10003 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:96,101,0,0 0/0:.:197:197:0:0%:96,101,0,0 -Example1_ref 10004 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:96,101,0,0 0/0:.:197:197:0:0%:96,101,0,0 -Example1_ref 10005 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:95,101,0,0 0/0:.:196:196:0:0%:95,101,0,0 -Example1_ref 10006 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:91,101,0,0 0/0:.:192:192:0:0%:91,101,0,0 -Example1_ref 10007 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:89,97,0,0 0/0:.:186:186:0:0%:89,97,0,0 -Example1_ref 10008 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:90,97,0,0 0/0:.:187:187:0:0%:90,97,0,0 -Example1_ref 10009 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:197:197:0:0%:97,100,0,0 -Example1_ref 10010 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:99,100,0,0 0/0:.:199:199:0:0%:99,100,0,0 -Example1_ref 10011 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:97,99,0,0 0/0:.:196:196:0:0%:97,99,0,0 -Example1_ref 10012 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:98,99,0,0 0/0:.:197:197:0:0%:98,99,0,0 -Example1_ref 10013 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:96,100,0,0 0/0:.:196:196:0:0%:96,100,0,0 -Example1_ref 10014 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:0:0%:97,100,0,0 0/0:.:198:197:0:0%:97,100,0,0 -Example1_ref 10015 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:92,101,0,0 0/0:.:193:193:0:0%:92,101,0,0 -Example1_ref 10016 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:99,100,0,0 0/0:.:199:199:0:0%:99,100,0,0 -Example1_ref 10017 . C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:97,102,0,0 0/0:.:199:199:0:0%:97,102,0,0 -Example1_ref 10018 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:100,100,0,0 0/0:.:200:200:0:0%:100,100,0,0 -Example1_ref 10019 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:194:194:0:0%:96,98,0,0 -Example1_ref 10020 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:94,96,0,0 0/0:.:190:190:0:0%:94,96,0,0 -Example1_ref 10021 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:94,98,0,0 0/0:.:192:192:0:0%:94,98,0,0 -Example1_ref 10022 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:92,97,0,0 0/0:.:189:189:0:0%:92,97,0,0 -Example1_ref 10023 . C A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:190:1:0.52%:91,99,1,0 0/0:.:192:190:1:0.52%:91,99,1,0 -Example1_ref 10024 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:94,90,0,0 0/0:.:184:184:0:0%:94,90,0,0 -Example1_ref 10025 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:93,94,0,0 0/0:.:187:187:0:0%:93,94,0,0 -Example1_ref 10026 . CA C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:89,95,1,0 0/0:.:185:184:1:0.54%:89,95,1,0 -Example1_ref 10027 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:91,95,0,0 0/0:.:186:186:0:0%:91,95,0,0 -Example1_ref 10028 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:184:184:0:0%:88,96,0,0 -Example1_ref 10029 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:92,95,0,0 0/0:.:187:187:0:0%:92,95,0,0 -Example1_ref 10030 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:91,96,0,0 0/0:.:187:187:0:0%:91,96,0,0 -Example1_ref 10031 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:93,96,0,0 0/0:.:189:189:0:0%:93,96,0,0 -Example1_ref 10032 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:92,94,0,0 0/0:.:186:186:0:0%:92,94,0,0 -Example1_ref 10033 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:91,97,0,0 0/0:.:188:188:0:0%:91,97,0,0 -Example1_ref 10034 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:93,97,0,0 0/0:.:190:190:0:0%:93,97,0,0 -Example1_ref 10035 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:90,95,0,0 0/0:.:185:185:0:0%:90,95,0,0 -Example1_ref 10036 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:91,93,0,0 0/0:.:184:184:0:0%:91,93,0,0 -Example1_ref 10037 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:184:184:0:0%:88,96,0,0 -Example1_ref 10038 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:85,97,0,0 0/0:.:182:182:0:0%:85,97,0,0 -Example1_ref 10039 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:92,96,0,0 0/0:.:188:188:0:0%:92,96,0,0 -Example1_ref 10040 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:91,95,0,0 0/0:.:186:186:0:0%:91,95,0,0 -Example1_ref 10041 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:83,95,0,0 0/0:.:178:178:0:0%:83,95,0,0 -Example1_ref 10042 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:76,93,0,0 0/0:.:169:169:0:0%:76,93,0,0 -Example1_ref 10043 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:77,95,0,0 0/0:.:172:172:0:0%:77,95,0,0 -Example1_ref 10044 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:76,97,0,0 0/0:.:173:173:0:0%:76,97,0,0 -Example1_ref 10045 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:81,95,0,0 0/0:.:176:176:0:0%:81,95,0,0 -Example1_ref 10046 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:178:178:0:0%:81,97,0,0 -Example1_ref 10047 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:79,97,0,0 0/0:.:176:176:0:0%:79,97,0,0 -Example1_ref 10048 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:79,98,0,0 0/0:.:177:177:0:0%:79,98,0,0 -Example1_ref 10049 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:83,96,0,0 0/0:.:179:179:0:0%:83,96,0,0 -Example1_ref 10050 . T C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:83,94,0,1 0/0:.:178:177:1:0.56%:83,94,0,1 -Example1_ref 10051 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:83,96,0,0 0/0:.:179:179:0:0%:83,96,0,0 -Example1_ref 10052 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:82,97,0,0 0/0:.:179:179:0:0%:82,97,0,0 -Example1_ref 10053 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:82,98,0,0 0/0:.:180:180:0:0%:82,98,0,0 -Example1_ref 10054 . T TC . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:82,96,1,0 0/0:.:179:178:1:0.56%:82,96,1,0 -Example1_ref 10055 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:79,97,0,0 0/0:.:176:176:0:0%:79,97,0,0 -Example1_ref 10056 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:79,96,0,0 0/0:.:175:175:0:0%:79,96,0,0 -Example1_ref 10057 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:175:175:0:0%:81,94,0,0 -Example1_ref 10058 . G A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:78,91,0,1 0/0:.:170:169:1:0.59%:78,91,0,1 -Example1_ref 10059 . C A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:171:1:0.58%:79,92,0,1 0/0:.:173:171:1:0.58%:79,92,0,1 -Example1_ref 10060 . A C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:77,94,1,0 0/0:.:172:171:1:0.58%:77,94,1,0 -Example1_ref 10061 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:78,95,0,0 0/0:.:173:173:0:0%:78,95,0,0 -Example1_ref 10062 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:79,94,0,0 0/0:.:173:173:0:0%:79,94,0,0 -Example1_ref 10063 . T A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=6.8862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:166:2:1.19%:77,89,2,0 0/0:.:169:166:2:1.19%:77,89,2,0 -Example1_ref 10064 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:78,90,0,0 0/0:.:168:168:0:0%:78,90,0,0 -Example1_ref 10065 . A G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:77,89,0,1 0/0:.:167:166:1:0.6%:77,89,0,1 -Example1_ref 10066 . T G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:77,88,0,1 0/0:.:166:165:1:0.6%:77,88,0,1 -Example1_ref 10067 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:76,84,0,0 0/0:.:160:160:0:0%:76,84,0,0 -Example1_ref 10068 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:77,87,0,0 0/0:.:164:164:0:0%:77,87,0,0 -Example1_ref 10069 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:77,87,0,0 0/0:.:164:164:0:0%:77,87,0,0 -Example1_ref 10070 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:76,87,0,0 0/0:.:163:163:0:0%:76,87,0,0 -Example1_ref 10071 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:74,82,0,0 0/0:.:156:156:0:0%:74,82,0,0 -Example1_ref 10072 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:81,85,0,0 0/0:.:166:166:0:0%:81,85,0,0 -Example1_ref 10073 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:82,84,0,0 0/0:.:166:166:0:0%:82,84,0,0 -Example1_ref 10074 . A G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:80,84,1,0 0/0:.:165:164:1:0.61%:80,84,1,0 -Example1_ref 10075 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:81,82,0,0 0/0:.:163:163:0:0%:81,82,0,0 -Example1_ref 10076 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:82,82,0,0 0/0:.:164:164:0:0%:82,82,0,0 -Example1_ref 10077 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:90,85,0,0 0/0:.:175:175:0:0%:90,85,0,0 -Example1_ref 10078 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:90,85,0,0 0/0:.:175:175:0:0%:90,85,0,0 -Example1_ref 10079 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:89,85,0,0 0/0:.:174:174:0:0%:89,85,0,0 -Example1_ref 10080 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:91,81,0,0 0/0:.:172:172:0:0%:91,81,0,0 -Example1_ref 10081 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:177:177:0:0%:92,85,0,0 -Example1_ref 10082 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:91,85,0,0 0/0:.:176:176:0:0%:91,85,0,0 -Example1_ref 10083 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:90,86,0,0 0/0:.:176:176:0:0%:90,86,0,0 -Example1_ref 10084 . T TAAGAGACA . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:91,84,0,1 0/0:.:176:175:1:0.57%:91,84,0,1 -Example1_ref 10085 . G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:89,87,0,0 0/0:.:176:176:0:0%:89,87,0,0 -Example1_ref 10086 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:91,77,0,0 0/0:.:168:168:0:0%:91,77,0,0 -Example1_ref 10087 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:94,77,0,0 0/0:.:171:171:0:0%:94,77,0,0 -Example1_ref 10088 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:93,76,0,0 0/0:.:169:169:0:0%:93,76,0,0 -Example1_ref 10089 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:167:167:0:0%:92,75,0,0 -Example1_ref 10090 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:91,76,0,0 0/0:.:167:167:0:0%:91,76,0,0 -Example1_ref 10091 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:91,76,0,0 0/0:.:167:167:0:0%:91,76,0,0 -Example1_ref 10092 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:92,76,0,0 0/0:.:168:168:0:0%:92,76,0,0 -Example1_ref 10093 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:92,76,0,0 0/0:.:168:168:0:0%:92,76,0,0 -Example1_ref 10094 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:91,76,0,0 0/0:.:167:167:0:0%:91,76,0,0 -Example1_ref 10095 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:167:167:0:0%:90,77,0,0 -Example1_ref 10096 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:90,76,0,0 0/0:.:166:166:0:0%:90,76,0,0 -Example1_ref 10097 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:164:164:0:0%:88,76,0,0 -Example1_ref 10098 . C A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:87,73,0,1 0/0:.:161:160:1:0.62%:87,73,0,1 -Example1_ref 10099 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 10100 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:163:163:0:0%:86,77,0,0 -Example1_ref 10101 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 10102 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:161:161:0:0%:85,76,0,0 -Example1_ref 10103 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:81,77,0,0 0/0:.:158:158:0:0%:81,77,0,0 -Example1_ref 10104 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:160:160:0:0%:83,77,0,0 -Example1_ref 10105 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:166:166:0:0%:84,82,0,0 -Example1_ref 10106 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:87,82,0,0 0/0:.:169:169:0:0%:87,82,0,0 -Example1_ref 10107 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:166:166:0:0%:84,82,0,0 -Example1_ref 10108 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:83,82,0,0 0/0:.:165:165:0:0%:83,82,0,0 -Example1_ref 10109 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:166:166:0:0%:84,82,0,0 -Example1_ref 10110 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:86,84,0,0 0/0:.:170:170:0:0%:86,84,0,0 -Example1_ref 10111 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:85,83,0,0 0/0:.:168:168:0:0%:85,83,0,0 -Example1_ref 10112 . G C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:81,84,1,0 0/0:.:166:165:1:0.6%:81,84,1,0 -Example1_ref 10113 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:85,80,0,0 0/0:.:165:165:0:0%:85,80,0,0 -Example1_ref 10114 . A G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:83,79,1,0 0/0:.:163:162:1:0.61%:83,79,1,0 -Example1_ref 10115 . G T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:84,81,1,0 0/0:.:166:165:1:0.6%:84,81,1,0 -Example1_ref 10116 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:86,80,0,0 0/0:.:166:166:0:0%:86,80,0,0 -Example1_ref 10117 . A ACTGTCT . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:93,83,1,0 0/0:.:177:176:1:0.56%:93,83,1,0 -Example1_ref 10118 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:92,80,0,0 0/0:.:172:172:0:0%:92,80,0,0 -Example1_ref 10119 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:92,80,0,0 0/0:.:172:172:0:0%:92,80,0,0 -Example1_ref 10120 . T C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:93,79,0,1 0/0:.:173:172:1:0.58%:93,79,0,1 -Example1_ref 10121 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:92,80,0,0 0/0:.:172:172:0:0%:92,80,0,0 -Example1_ref 10122 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:90,79,0,0 0/0:.:169:169:0:0%:90,79,0,0 -Example1_ref 10123 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:87,80,0,0 0/0:.:167:167:0:0%:87,80,0,0 -Example1_ref 10124 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:87,77,0,0 0/0:.:164:164:0:0%:87,77,0,0 -Example1_ref 10125 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:164:164:0:0%:85,79,0,0 -Example1_ref 10126 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:88,71,0,0 0/0:.:159:159:0:0%:88,71,0,0 -Example1_ref 10127 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:155:155:0:0%:85,70,0,0 -Example1_ref 10128 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:87,69,0,0 0/0:.:156:156:0:0%:87,69,0,0 -Example1_ref 10129 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:155:155:0:0%:86,69,0,0 -Example1_ref 10130 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:84,69,0,0 0/0:.:153:153:0:0%:84,69,0,0 -Example1_ref 10131 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:82,70,0,0 0/0:.:152:152:0:0%:82,70,0,0 -Example1_ref 10132 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:84,72,0,0 0/0:.:156:156:0:0%:84,72,0,0 -Example1_ref 10133 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 10134 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 10135 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 10136 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 10137 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 10138 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:81,74,0,0 0/0:.:155:155:0:0%:81,74,0,0 -Example1_ref 10139 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:83,73,0,0 0/0:.:156:156:0:0%:83,73,0,0 -Example1_ref 10140 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:84,73,0,0 0/0:.:157:157:0:0%:84,73,0,0 -Example1_ref 10141 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:83,72,0,0 0/0:.:155:155:0:0%:83,72,0,0 -Example1_ref 10142 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:155:155:0:0%:82,73,0,0 -Example1_ref 10143 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:147:147:0:0%:77,70,0,0 -Example1_ref 10144 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:154:154:0:0%:85,69,0,0 -Example1_ref 10145 . C A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:84,69,1,0 0/0:.:154:153:1:0.65%:84,69,1,0 -Example1_ref 10146 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:156:156:0:0%:86,70,0,0 -Example1_ref 10147 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:157:157:0:0%:88,69,0,0 -Example1_ref 10148 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:88,71,0,0 0/0:.:159:159:0:0%:88,71,0,0 -Example1_ref 10149 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:87,68,0,0 0/0:.:155:155:0:0%:87,68,0,0 -Example1_ref 10150 . G A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:87,69,0,1 0/0:.:157:156:1:0.64%:87,69,0,1 -Example1_ref 10151 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 10152 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 10153 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:90,70,0,0 0/0:.:160:160:0:0%:90,70,0,0 -Example1_ref 10154 . T C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:160:1:0.62%:89,71,1,0 0/0:.:162:160:1:0.62%:89,71,1,0 -Example1_ref 10155 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:88,72,0,0 0/0:.:160:160:0:0%:88,72,0,0 -Example1_ref 10156 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:95,67,0,0 0/0:.:162:162:0:0%:95,67,0,0 -Example1_ref 10157 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 10158 . A ACTGTCTC . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:89,70,1,0 0/0:.:160:159:1:0.62%:89,70,1,0 -Example1_ref 10159 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:91,69,0,0 0/0:.:160:160:0:0%:91,69,0,0 -Example1_ref 10160 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:93,64,0,0 0/0:.:157:157:0:0%:93,64,0,0 -Example1_ref 10161 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:96,65,0,0 0/0:.:161:161:0:0%:96,65,0,0 -Example1_ref 10162 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:97,65,0,0 0/0:.:162:162:0:0%:97,65,0,0 -Example1_ref 10163 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:95,66,0,0 0/0:.:161:161:0:0%:95,66,0,0 -Example1_ref 10164 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:161:161:0:0%:97,64,0,0 -Example1_ref 10165 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:95,63,0,0 0/0:.:158:158:0:0%:95,63,0,0 -Example1_ref 10166 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:162:162:0:0%:94,68,0,0 -Example1_ref 10167 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:165:165:0:0%:94,71,0,0 -Example1_ref 10168 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:96,71,0,0 0/0:.:167:167:0:0%:96,71,0,0 -Example1_ref 10169 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:97,69,0,0 0/0:.:166:166:0:0%:97,69,0,0 -Example1_ref 10170 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:95,67,0,0 0/0:.:162:162:0:0%:95,67,0,0 -Example1_ref 10171 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:165:165:0:0%:97,68,0,0 -Example1_ref 10172 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:96,66,0,0 0/0:.:162:162:0:0%:96,66,0,0 -Example1_ref 10173 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:90,67,0,0 0/0:.:157:157:0:0%:90,67,0,0 -Example1_ref 10174 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 10175 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 10176 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:158:158:0:0%:90,68,0,0 -Example1_ref 10177 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:93,67,0,0 0/0:.:160:160:0:0%:93,67,0,0 -Example1_ref 10178 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:162:162:0:0%:94,68,0,0 -Example1_ref 10179 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:97,68,0,0 0/0:.:166:165:0:0%:97,68,0,0 -Example1_ref 10180 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:92,66,0,0 0/0:.:158:158:0:0%:92,66,0,0 -Example1_ref 10181 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 10182 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:96,68,0,0 0/0:.:164:164:0:0%:96,68,0,0 -Example1_ref 10183 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:97,70,0,0 0/0:.:167:167:0:0%:97,70,0,0 -Example1_ref 10184 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:162:162:0:0%:94,68,0,0 -Example1_ref 10185 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:92,72,0,0 0/0:.:164:164:0:0%:92,72,0,0 -Example1_ref 10186 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:96,71,0,0 0/0:.:167:167:0:0%:96,71,0,0 -Example1_ref 10187 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:92,71,0,0 0/0:.:163:163:0:0%:92,71,0,0 -Example1_ref 10188 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 10189 . T G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:93,64,1,0 0/0:.:158:157:1:0.63%:93,64,1,0 -Example1_ref 10190 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:93,61,0,0 0/0:.:154:154:0:0%:93,61,0,0 -Example1_ref 10191 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:161:161:0:0%:92,69,0,0 -Example1_ref 10192 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:94,69,0,0 0/0:.:163:163:0:0%:94,69,0,0 -Example1_ref 10193 . GA G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:92,68,1,0 0/0:.:161:160:1:0.62%:92,68,1,0 -Example1_ref 10194 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:89,71,0,0 0/0:.:160:160:0:0%:89,71,0,0 -Example1_ref 10195 . A AT . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:92,71,1,0 0/0:.:164:163:1:0.61%:92,71,1,0 -Example1_ref 10196 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:93,70,0,0 0/0:.:163:163:0:0%:93,70,0,0 -Example1_ref 10197 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 10198 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:90,67,0,0 0/0:.:157:157:0:0%:90,67,0,0 -Example1_ref 10199 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:87,68,0,0 0/0:.:155:155:0:0%:87,68,0,0 -Example1_ref 10200 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:85,68,0,0 0/0:.:153:153:0:0%:85,68,0,0 -Example1_ref 10201 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:154:154:0:0%:88,66,0,0 -Example1_ref 10202 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:87,67,0,0 0/0:.:154:154:0:0%:87,67,0,0 -Example1_ref 10203 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:88,65,0,0 0/0:.:153:153:0:0%:88,65,0,0 -Example1_ref 10204 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:93,66,0,0 0/0:.:159:159:0:0%:93,66,0,0 -Example1_ref 10205 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:0:0%:92,62,0,0 0/0:.:155:154:0:0%:92,62,0,0 -Example1_ref 10206 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:85,64,0,0 0/0:.:149:149:0:0%:85,64,0,0 -Example1_ref 10207 . TTA T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:88,68,0,1 0/0:.:157:156:1:0.64%:88,68,0,1 -Example1_ref 10208 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:87,71,0,0 0/0:.:158:158:0:0%:87,71,0,0 -Example1_ref 10209 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:160:160:0:0%:87,73,0,0 -Example1_ref 10210 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:160:160:0:0%:87,73,0,0 -Example1_ref 10211 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:88,70,0,0 0/0:.:158:158:0:0%:88,70,0,0 -Example1_ref 10212 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:0:0%:89,72,0,0 0/0:.:162:161:0:0%:89,72,0,0 -Example1_ref 10213 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:89,68,0,0 0/0:.:157:157:0:0%:89,68,0,0 -Example1_ref 10214 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:87,67,0,0 0/0:.:154:154:0:0%:87,67,0,0 -Example1_ref 10215 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:89,69,0,0 0/0:.:158:158:0:0%:89,69,0,0 -Example1_ref 10216 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:87,69,0,0 0/0:.:156:156:0:0%:87,69,0,0 -Example1_ref 10217 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:154:154:0:0%:85,69,0,0 -Example1_ref 10218 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:157:157:0:0%:87,70,0,0 -Example1_ref 10219 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:157:157:0:0%:87,70,0,0 -Example1_ref 10220 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:155:155:0:0%:86,69,0,0 -Example1_ref 10221 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:157:157:0:0%:88,69,0,0 -Example1_ref 10222 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:155:155:0:0%:85,70,0,0 -Example1_ref 10223 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:156:156:0:0%:86,70,0,0 -Example1_ref 10224 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:156:156:0:0%:86,70,0,0 -Example1_ref 10225 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:151:151:0:0%:84,67,0,0 -Example1_ref 10226 . G T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:75,70,1,0 0/0:.:146:145:1:0.68%:75,70,1,0 -Example1_ref 10227 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:84,78,0,0 0/0:.:162:162:0:0%:84,78,0,0 -Example1_ref 10228 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:166:166:0:0%:87,79,0,0 -Example1_ref 10229 . AT A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:86,82,0,1 0/0:.:169:168:1:0.59%:86,82,0,1 -Example1_ref 10230 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:0:0%:85,78,0,0 0/0:.:164:163:0:0%:85,78,0,0 -Example1_ref 10231 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:171:171:0:0%:87,84,0,0 -Example1_ref 10232 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:88,85,0,0 0/0:.:173:173:0:0%:88,85,0,0 -Example1_ref 10233 . A G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.5073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:88,83,0,1 0/0:.:172:171:1:0.58%:88,83,0,1 -Example1_ref 10234 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:177:177:0:0%:92,85,0,0 -Example1_ref 10235 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:93,84,0,0 0/0:.:177:177:0:0%:93,84,0,0 -Example1_ref 10236 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:175:175:0:0%:94,81,0,0 -Example1_ref 10237 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:0:0%:94,90,0,0 0/0:.:185:184:0:0%:94,90,0,0 -Example1_ref 10238 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:88,89,0,0 0/0:.:177:177:0:0%:88,89,0,0 -Example1_ref 10239 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:94,90,0,0 0/0:.:184:184:0:0%:94,90,0,0 -Example1_ref 10240 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:94,91,0,0 0/0:.:185:185:0:0%:94,91,0,0 -Example1_ref 10241 . G T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:93,88,1,0 0/0:.:182:181:1:0.55%:93,88,1,0 -Example1_ref 10242 . G GTCTGTCTCT . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:181:1:0.55%:90,91,1,0 0/0:.:183:181:1:0.55%:90,91,1,0 -Example1_ref 10243 . T TC . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:90,89,1,0 0/0:.:180:179:1:0.56%:90,89,1,0 -Example1_ref 10244 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:91,86,0,0 0/0:.:177:177:0:0%:91,86,0,0 -Example1_ref 10245 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:92,87,0,0 0/0:.:179:179:0:0%:92,87,0,0 -Example1_ref 10246 . A T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:90,88,1,0 0/0:.:179:178:1:0.56%:90,88,1,0 -Example1_ref 10247 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:92,83,0,0 0/0:.:175:175:0:0%:92,83,0,0 -Example1_ref 10248 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:93,84,0,0 0/0:.:177:177:0:0%:93,84,0,0 -Example1_ref 10249 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:92,84,0,0 0/0:.:176:176:0:0%:92,84,0,0 -Example1_ref 10250 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:94,83,0,0 0/0:.:177:177:0:0%:94,83,0,0 -Example1_ref 10251 . T TA . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:92,83,1,0 0/0:.:176:175:1:0.57%:92,83,1,0 -Example1_ref 10252 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:0:0%:89,85,0,0 0/0:.:175:174:0:0%:89,85,0,0 -Example1_ref 10253 . G T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:90,84,1,0 0/0:.:175:174:1:0.57%:90,84,1,0 -Example1_ref 10254 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:171:171:0:0%:87,84,0,0 -Example1_ref 10255 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:92,86,0,0 0/0:.:178:178:0:0%:92,86,0,0 -Example1_ref 10256 . A G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:89,88,1,0 0/0:.:178:177:1:0.56%:89,88,1,0 -Example1_ref 10257 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:88,92,0,0 0/0:.:180:180:0:0%:88,92,0,0 -Example1_ref 10258 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:85,91,0,0 0/0:.:176:176:0:0%:85,91,0,0 -Example1_ref 10259 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:89,94,0,0 0/0:.:183:183:0:0%:89,94,0,0 -Example1_ref 10260 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:92,94,0,0 0/0:.:186:186:0:0%:92,94,0,0 -Example1_ref 10261 . G A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:80,94,1,0 0/0:.:175:174:1:0.57%:80,94,1,0 -Example1_ref 10262 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:79,94,0,0 0/0:.:173:173:0:0%:79,94,0,0 -Example1_ref 10263 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:82,92,0,0 0/0:.:174:174:0:0%:82,92,0,0 -Example1_ref 10264 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:83,94,0,0 0/0:.:177:177:0:0%:83,94,0,0 -Example1_ref 10265 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:175:175:0:0%:84,91,0,0 -Example1_ref 10266 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:82,93,0,0 0/0:.:175:175:0:0%:82,93,0,0 -Example1_ref 10267 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:75,91,0,0 0/0:.:166:166:0:0%:75,91,0,0 -Example1_ref 10268 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:76,93,0,0 0/0:.:169:169:0:0%:76,93,0,0 -Example1_ref 10269 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:76,98,0,0 0/0:.:174:174:0:0%:76,98,0,0 -Example1_ref 10270 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:73,96,0,0 0/0:.:169:169:0:0%:73,96,0,0 -Example1_ref 10271 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:73,95,0,0 0/0:.:168:168:0:0%:73,95,0,0 -Example1_ref 10272 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:76,98,0,0 0/0:.:174:174:0:0%:76,98,0,0 -Example1_ref 10273 . G T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:69,97,1,0 0/0:.:167:166:1:0.6%:69,97,1,0 -Example1_ref 10274 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:72,95,0,0 0/0:.:167:167:0:0%:72,95,0,0 -Example1_ref 10275 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:71,95,0,0 0/0:.:166:166:0:0%:71,95,0,0 -Example1_ref 10276 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:74,90,0,0 0/0:.:164:164:0:0%:74,90,0,0 -Example1_ref 10277 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:70,94,0,0 0/0:.:164:164:0:0%:70,94,0,0 -Example1_ref 10278 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:72,94,0,0 0/0:.:166:166:0:0%:72,94,0,0 -Example1_ref 10279 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:72,94,0,0 0/0:.:166:166:0:0%:72,94,0,0 -Example1_ref 10280 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:76,95,0,0 0/0:.:171:171:0:0%:76,95,0,0 -Example1_ref 10281 . C T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:73,88,1,0 0/0:.:162:161:1:0.62%:73,88,1,0 -Example1_ref 10282 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:73,96,0,0 0/0:.:169:169:0:0%:73,96,0,0 -Example1_ref 10283 . C A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:74,94,1,0 0/0:.:169:168:1:0.59%:74,94,1,0 -Example1_ref 10284 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:74,95,0,0 0/0:.:169:169:0:0%:74,95,0,0 -Example1_ref 10285 . G A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:72,94,1,0 0/0:.:167:166:1:0.6%:72,94,1,0 -Example1_ref 10286 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:69,94,0,0 0/0:.:163:163:0:0%:69,94,0,0 -Example1_ref 10287 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:74,95,0,0 0/0:.:169:169:0:0%:74,95,0,0 -Example1_ref 10288 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:75,92,0,0 0/0:.:167:167:0:0%:75,92,0,0 -Example1_ref 10289 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:75,91,0,0 0/0:.:166:166:0:0%:75,91,0,0 -Example1_ref 10290 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:74,93,0,0 0/0:.:167:167:0:0%:74,93,0,0 -Example1_ref 10291 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:75,96,0,0 0/0:.:171:171:0:0%:75,96,0,0 -Example1_ref 10292 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:76,93,0,0 0/0:.:169:169:0:0%:76,93,0,0 -Example1_ref 10293 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:73,96,0,0 0/0:.:169:169:0:0%:73,96,0,0 -Example1_ref 10294 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:166:166:0:0%:73,93,0,0 -Example1_ref 10295 . G T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:66,92,1,0 0/0:.:159:158:1:0.63%:66,92,1,0 -Example1_ref 10296 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:70,92,0,0 0/0:.:162:162:0:0%:70,92,0,0 -Example1_ref 10297 . G T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=6.8868E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:158:2:1.25%:66,92,2,0 0/0:.:160:158:2:1.25%:66,92,2,0 -Example1_ref 10298 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:72,93,0,0 0/0:.:165:165:0:0%:72,93,0,0 -Example1_ref 10299 . C . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:75,88,0,0 0/0:.:163:163:0:0%:75,88,0,0 -Example1_ref 10300 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:74,91,0,0 0/0:.:166:165:0:0%:74,91,0,0 -Example1_ref 10301 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:76,89,0,0 0/0:.:165:165:0:0%:76,89,0,0 -Example1_ref 10302 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:75,90,0,0 0/0:.:165:165:0:0%:75,90,0,0 -Example1_ref 10303 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:74,92,0,0 0/0:.:166:166:0:0%:74,92,0,0 -Example1_ref 10304 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:73,89,0,0 0/0:.:162:162:0:0%:73,89,0,0 -Example1_ref 10305 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:73,90,0,0 0/0:.:163:163:0:0%:73,90,0,0 -Example1_ref 10306 . T A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:73,90,1,0 0/0:.:164:163:1:0.61%:73,90,1,0 -Example1_ref 10307 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:62,92,0,0 0/0:.:154:154:0:0%:62,92,0,0 -Example1_ref 10308 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:64,93,0,0 0/0:.:157:157:0:0%:64,93,0,0 -Example1_ref 10309 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:157:157:0:0%:63,94,0,0 -Example1_ref 10310 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:60,96,0,0 0/0:.:156:156:0:0%:60,96,0,0 -Example1_ref 10311 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:64,96,0,0 0/0:.:160:160:0:0%:64,96,0,0 -Example1_ref 10312 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:64,93,0,0 0/0:.:157:157:0:0%:64,93,0,0 -Example1_ref 10313 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:157:157:0:0%:63,94,0,0 -Example1_ref 10314 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:65,96,0,0 0/0:.:161:161:0:0%:65,96,0,0 -Example1_ref 10315 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:65,96,0,0 0/0:.:161:161:0:0%:65,96,0,0 -Example1_ref 10316 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:65,97,0,0 0/0:.:162:162:0:0%:65,97,0,0 -Example1_ref 10317 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:64,94,0,0 0/0:.:158:158:0:0%:64,94,0,0 -Example1_ref 10318 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:67,97,0,0 0/0:.:164:164:0:0%:67,97,0,0 -Example1_ref 10319 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:62,96,0,0 0/0:.:158:158:0:0%:62,96,0,0 -Example1_ref 10320 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:59,96,0,0 0/0:.:155:155:0:0%:59,96,0,0 -Example1_ref 10321 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:157:157:0:0%:63,94,0,0 -Example1_ref 10322 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:157:157:0:0%:63,94,0,0 -Example1_ref 10323 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:62,83,0,0 0/0:.:145:145:0:0%:62,83,0,0 -Example1_ref 10324 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:64,85,0,0 0/0:.:149:149:0:0%:64,85,0,0 -Example1_ref 10325 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:63,80,0,0 0/0:.:143:143:0:0%:63,80,0,0 -Example1_ref 10326 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:138:138:0:0%:61,77,0,0 -Example1_ref 10327 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:61,82,0,0 0/0:.:143:143:0:0%:61,82,0,0 -Example1_ref 10328 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:63,85,0,0 0/0:.:148:148:0:0%:63,85,0,0 -Example1_ref 10329 . T C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:64,84,0,1 0/0:.:149:148:1:0.67%:64,84,0,1 -Example1_ref 10330 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:145:145:0:0%:60,85,0,0 -Example1_ref 10331 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:59,84,0,0 0/0:.:143:143:0:0%:59,84,0,0 -Example1_ref 10332 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:63,87,0,0 0/0:.:150:150:0:0%:63,87,0,0 -Example1_ref 10333 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 10334 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 10335 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:60,86,0,0 0/0:.:146:146:0:0%:60,86,0,0 -Example1_ref 10336 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 10337 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:59,86,0,0 0/0:.:145:145:0:0%:59,86,0,0 -Example1_ref 10338 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:60,86,0,0 0/0:.:146:146:0:0%:60,86,0,0 -Example1_ref 10339 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:145:145:0:0%:60,85,0,0 -Example1_ref 10340 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:54,85,0,0 0/0:.:139:139:0:0%:54,85,0,0 -Example1_ref 10341 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:54,84,0,0 0/0:.:138:138:0:0%:54,84,0,0 -Example1_ref 10342 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:48,83,0,0 0/0:.:131:131:0:0%:48,83,0,0 -Example1_ref 10343 . A C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=6.8885E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:138:2:1.43%:53,85,2,0 0/0:.:140:138:2:1.43%:53,85,2,0 -Example1_ref 10344 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:55,83,0,0 0/0:.:138:138:0:0%:55,83,0,0 -Example1_ref 10345 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:55,82,0,0 0/0:.:137:137:0:0%:55,82,0,0 -Example1_ref 10346 . G GCTT . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:52,83,1,0 0/0:.:136:135:1:0.74%:52,83,1,0 -Example1_ref 10347 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:53,84,0,0 0/0:.:137:137:0:0%:53,84,0,0 -Example1_ref 10348 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:52,84,0,0 0/0:.:136:136:0:0%:52,84,0,0 -Example1_ref 10349 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:53,83,0,0 0/0:.:136:136:0:0%:53,83,0,0 -Example1_ref 10350 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:52,82,0,0 0/0:.:134:134:0:0%:52,82,0,0 -Example1_ref 10351 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:45,81,0,0 0/0:.:126:126:0:0%:45,81,0,0 -Example1_ref 10352 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:49,79,0,0 0/0:.:128:128:0:0%:49,79,0,0 -Example1_ref 10353 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:47,82,0,0 0/0:.:129:129:0:0%:47,82,0,0 -Example1_ref 10354 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:0:0%:47,80,0,0 0/0:.:128:127:0:0%:47,80,0,0 -Example1_ref 10355 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:48,82,0,0 0/0:.:131:130:0:0%:48,82,0,0 -Example1_ref 10356 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:47,72,0,0 0/0:.:119:119:0:0%:47,72,0,0 -Example1_ref 10357 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:0:0%:50,73,0,0 0/0:.:124:123:0:0%:50,73,0,0 -Example1_ref 10358 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:52,75,0,0 0/0:.:127:127:0:0%:52,75,0,0 -Example1_ref 10359 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:51,71,0,0 0/0:.:122:122:0:0%:51,71,0,0 -Example1_ref 10360 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:50,73,0,0 0/0:.:123:123:0:0%:50,73,0,0 -Example1_ref 10361 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:52,72,0,0 0/0:.:124:124:0:0%:52,72,0,0 -Example1_ref 10362 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:128:128:0:0%:52,76,0,0 -Example1_ref 10363 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:52,77,0,0 0/0:.:129:129:0:0%:52,77,0,0 -Example1_ref 10364 . T TCTG . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:50,75,1,0 0/0:.:126:125:1:0.79%:50,75,1,0 -Example1_ref 10365 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:51,75,0,0 0/0:.:126:126:0:0%:51,75,0,0 -Example1_ref 10366 . A T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:54,77,1,0 0/0:.:132:131:1:0.76%:54,77,1,0 -Example1_ref 10367 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:54,75,0,0 0/0:.:129:129:0:0%:54,75,0,0 -Example1_ref 10368 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:128:128:0:0%:53,75,0,0 -Example1_ref 10369 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:128:128:0:0%:53,75,0,0 -Example1_ref 10370 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:53,76,0,0 0/0:.:129:129:0:0%:53,76,0,0 -Example1_ref 10371 . A T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:54,72,0,1 0/0:.:127:126:1:0.79%:54,72,0,1 -Example1_ref 10372 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:128:128:0:0%:52,76,0,0 -Example1_ref 10373 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:53,76,0,0 0/0:.:129:129:0:0%:53,76,0,0 -Example1_ref 10374 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:55,77,0,0 0/0:.:132:132:0:0%:55,77,0,0 -Example1_ref 10375 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:57,73,0,0 0/0:.:130:130:0:0%:57,73,0,0 -Example1_ref 10376 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:57,70,0,0 0/0:.:127:127:0:0%:57,70,0,0 -Example1_ref 10377 . T A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:57,71,0,1 0/0:.:129:128:1:0.78%:57,71,0,1 -Example1_ref 10378 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:56,73,0,0 0/0:.:129:129:0:0%:56,73,0,0 -Example1_ref 10379 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:56,73,0,0 0/0:.:129:129:0:0%:56,73,0,0 -Example1_ref 10380 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:55,75,0,0 0/0:.:130:130:0:0%:55,75,0,0 -Example1_ref 10381 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:54,71,0,0 0/0:.:125:125:0:0%:54,71,0,0 -Example1_ref 10382 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:54,74,0,0 0/0:.:128:128:0:0%:54,74,0,0 -Example1_ref 10383 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:128:128:0:0%:56,72,0,0 -Example1_ref 10384 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:56,71,0,0 0/0:.:127:127:0:0%:56,71,0,0 -Example1_ref 10385 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:128:128:0:0%:56,72,0,0 -Example1_ref 10386 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:57,69,0,0 0/0:.:126:126:0:0%:57,69,0,0 -Example1_ref 10387 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:60,72,0,0 0/0:.:132:132:0:0%:60,72,0,0 -Example1_ref 10388 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:128:128:0:0%:59,69,0,0 -Example1_ref 10389 . C A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:61,67,0,1 0/0:.:129:128:1:0.78%:61,67,0,1 -Example1_ref 10390 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:62,71,0,0 0/0:.:133:133:0:0%:62,71,0,0 -Example1_ref 10391 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:63,71,0,0 0/0:.:134:134:0:0%:63,71,0,0 -Example1_ref 10392 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:63,68,0,0 0/0:.:131:131:0:0%:63,68,0,0 -Example1_ref 10393 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:61,71,0,0 0/0:.:132:132:0:0%:61,71,0,0 -Example1_ref 10394 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:56,65,0,0 0/0:.:121:121:0:0%:56,65,0,0 -Example1_ref 10395 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:57,66,0,0 0/0:.:123:123:0:0%:57,66,0,0 -Example1_ref 10396 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:58,65,0,0 0/0:.:123:123:0:0%:58,65,0,0 -Example1_ref 10397 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:54,65,0,0 0/0:.:119:119:0:0%:54,65,0,0 -Example1_ref 10398 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:58,65,0,0 0/0:.:123:123:0:0%:58,65,0,0 -Example1_ref 10399 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:59,63,0,0 0/0:.:122:122:0:0%:59,63,0,0 -Example1_ref 10400 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:55,63,0,0 0/0:.:118:118:0:0%:55,63,0,0 -Example1_ref 10401 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:60,60,0,0 0/0:.:120:120:0:0%:60,60,0,0 -Example1_ref 10402 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:58,60,0,0 0/0:.:118:118:0:0%:58,60,0,0 -Example1_ref 10403 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:56,59,0,0 0/0:.:115:115:0:0%:56,59,0,0 -Example1_ref 10404 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:116:116:0:0%:56,60,0,0 -Example1_ref 10405 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:58,62,0,0 0/0:.:120:120:0:0%:58,62,0,0 -Example1_ref 10406 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 10407 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:58,60,0,0 0/0:.:118:118:0:0%:58,60,0,0 -Example1_ref 10408 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:68,60,0,0 0/0:.:128:128:0:0%:68,60,0,0 -Example1_ref 10409 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:67,62,0,0 0/0:.:129:129:0:0%:67,62,0,0 -Example1_ref 10410 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:138:138:0:0%:75,63,0,0 -Example1_ref 10411 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:134:134:0:0%:75,59,0,0 -Example1_ref 10412 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:138:138:0:0%:75,63,0,0 -Example1_ref 10413 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:73,62,0,0 0/0:.:135:135:0:0%:73,62,0,0 -Example1_ref 10414 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:75,60,0,0 0/0:.:135:135:0:0%:75,60,0,0 -Example1_ref 10415 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:136:136:0:0%:74,62,0,0 -Example1_ref 10416 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:135:135:0:0%:74,61,0,0 -Example1_ref 10417 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:74,51,0,0 0/0:.:125:125:0:0%:74,51,0,0 -Example1_ref 10418 . G GC . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:73,51,1,0 0/0:.:125:124:1:0.8%:73,51,1,0 -Example1_ref 10419 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:74,47,0,0 0/0:.:121:121:0:0%:74,47,0,0 -Example1_ref 10420 . G GTCTCT . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=7.5102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:122:1:0.81%:76,46,1,0 0/0:.:124:122:1:0.81%:76,46,1,0 -Example1_ref 10421 . T C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:76,49,1,0 0/0:.:126:125:1:0.79%:76,49,1,0 -Example1_ref 10422 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:77,49,0,0 0/0:.:126:126:0:0%:77,49,0,0 -Example1_ref 10423 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:75,43,0,0 0/0:.:118:118:0:0%:75,43,0,0 -Example1_ref 10424 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:75,49,0,0 0/0:.:124:124:0:0%:75,49,0,0 -Example1_ref 10425 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:121:121:0:0%:72,49,0,0 -Example1_ref 10426 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:120:120:0:0%:72,48,0,0 -Example1_ref 10427 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:115:115:0:0%:71,44,0,0 -Example1_ref 10428 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:71,43,0,0 0/0:.:114:114:0:0%:71,43,0,0 -Example1_ref 10429 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:72,42,0,0 0/0:.:114:114:0:0%:72,42,0,0 -Example1_ref 10430 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:113:113:0:0%:72,41,0,0 -Example1_ref 10431 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:71,43,0,0 0/0:.:114:114:0:0%:71,43,0,0 -Example1_ref 10432 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:113:113:0:0%:72,41,0,0 -Example1_ref 10433 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:72,40,0,0 0/0:.:112:112:0:0%:72,40,0,0 -Example1_ref 10434 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:72,39,0,0 0/0:.:111:111:0:0%:72,39,0,0 -Example1_ref 10435 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:70,40,0,0 0/0:.:110:110:0:0%:70,40,0,0 -Example1_ref 10436 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:113:113:0:0%:72,41,0,0 -Example1_ref 10437 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:68,42,0,0 0/0:.:110:110:0:0%:68,42,0,0 -Example1_ref 10438 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:115:115:0:0%:71,44,0,0 -Example1_ref 10439 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:70,45,0,0 0/0:.:115:115:0:0%:70,45,0,0 -Example1_ref 10440 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:115:115:0:0%:71,44,0,0 -Example1_ref 10441 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:117:117:0:0%:72,45,0,0 -Example1_ref 10442 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:72,46,0,0 0/0:.:118:118:0:0%:72,46,0,0 -Example1_ref 10443 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:73,48,0,0 0/0:.:121:121:0:0%:73,48,0,0 -Example1_ref 10444 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:122:122:0:0%:72,50,0,0 -Example1_ref 10445 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:123:123:0:0%:73,50,0,0 -Example1_ref 10446 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:121:121:0:0%:72,49,0,0 -Example1_ref 10447 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:71,45,0,0 0/0:.:116:116:0:0%:71,45,0,0 -Example1_ref 10448 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:70,45,0,0 0/0:.:115:115:0:0%:70,45,0,0 -Example1_ref 10449 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:69,44,0,0 0/0:.:113:113:0:0%:69,44,0,0 -Example1_ref 10450 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:113:113:0:0%:72,41,0,0 -Example1_ref 10451 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:72,43,0,0 0/0:.:115:115:0:0%:72,43,0,0 -Example1_ref 10452 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:71,41,0,0 0/0:.:112:112:0:0%:71,41,0,0 -Example1_ref 10453 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:72,44,0,0 0/0:.:116:116:0:0%:72,44,0,0 -Example1_ref 10454 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:0:0%:71,43,0,0 0/0:.:115:114:0:0%:71,43,0,0 -Example1_ref 10455 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:71,43,0,0 0/0:.:114:114:0:0%:71,43,0,0 -Example1_ref 10456 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:69,43,0,0 0/0:.:112:112:0:0%:69,43,0,0 -Example1_ref 10457 . A ACCTGTCT . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.5109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:71,43,1,0 0/0:.:115:114:1:0.87%:71,43,1,0 -Example1_ref 10458 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:117:117:0:0%:74,43,0,0 -Example1_ref 10459 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:75,39,0,0 0/0:.:114:114:0:0%:75,39,0,0 -Example1_ref 10460 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:75,39,0,0 0/0:.:114:114:0:0%:75,39,0,0 -Example1_ref 10461 . A T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.5112E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:73,38,1,0 0/0:.:112:111:1:0.89%:73,38,1,0 -Example1_ref 10462 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:77,38,0,0 0/0:.:115:115:0:0%:77,38,0,0 -Example1_ref 10463 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:76,40,0,0 0/0:.:116:116:0:0%:76,40,0,0 -Example1_ref 10464 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:76,40,0,0 0/0:.:116:116:0:0%:76,40,0,0 -Example1_ref 10465 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:76,40,0,0 0/0:.:116:116:0:0%:76,40,0,0 -Example1_ref 10466 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:77,41,0,0 0/0:.:118:118:0:0%:77,41,0,0 -Example1_ref 10467 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:76,42,0,0 0/0:.:118:118:0:0%:76,42,0,0 -Example1_ref 10468 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:76,39,0,0 0/0:.:115:115:0:0%:76,39,0,0 -Example1_ref 10469 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:77,41,0,0 0/0:.:118:118:0:0%:77,41,0,0 -Example1_ref 10470 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:120:120:0:0%:78,42,0,0 -Example1_ref 10471 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:77,41,0,0 0/0:.:118:118:0:0%:77,41,0,0 -Example1_ref 10472 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:76,41,0,0 0/0:.:117:117:0:0%:76,41,0,0 -Example1_ref 10473 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:75,40,0,0 0/0:.:115:115:0:0%:75,40,0,0 -Example1_ref 10474 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:77,40,0,0 0/0:.:117:117:0:0%:77,40,0,0 -Example1_ref 10475 . A T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:77,41,1,0 0/0:.:119:118:1:0.84%:77,41,1,0 -Example1_ref 10476 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:83,42,0,0 0/0:.:125:125:0:0%:83,42,0,0 -Example1_ref 10477 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:84,42,0,0 0/0:.:126:126:0:0%:84,42,0,0 -Example1_ref 10478 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:85,40,0,0 0/0:.:125:125:0:0%:85,40,0,0 -Example1_ref 10479 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:86,41,0,0 0/0:.:127:127:0:0%:86,41,0,0 -Example1_ref 10480 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:88,39,0,0 0/0:.:127:127:0:0%:88,39,0,0 -Example1_ref 10481 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:93,39,0,0 0/0:.:132:132:0:0%:93,39,0,0 -Example1_ref 10482 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:91,39,0,0 0/0:.:130:130:0:0%:91,39,0,0 -Example1_ref 10483 . T A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:92,39,1,0 0/0:.:132:131:1:0.76%:92,39,1,0 -Example1_ref 10484 . T A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:92,40,1,0 0/0:.:133:132:1:0.75%:92,40,1,0 -Example1_ref 10485 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:135:135:0:0%:93,42,0,0 -Example1_ref 10486 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:94,43,0,0 0/0:.:137:137:0:0%:94,43,0,0 -Example1_ref 10487 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:135:135:0:0%:93,42,0,0 -Example1_ref 10488 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:94,42,0,0 0/0:.:136:136:0:0%:94,42,0,0 -Example1_ref 10489 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:135:135:0:0%:93,42,0,0 -Example1_ref 10490 . T G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:93,42,1,0 0/0:.:136:135:1:0.74%:93,42,1,0 -Example1_ref 10491 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:135:135:0:0%:93,42,0,0 -Example1_ref 10492 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:93,43,0,0 0/0:.:136:136:0:0%:93,43,0,0 -Example1_ref 10493 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:140:140:0:0%:95,45,0,0 -Example1_ref 10494 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:96,45,0,0 0/0:.:141:141:0:0%:96,45,0,0 -Example1_ref 10495 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:98,43,0,0 0/0:.:141:141:0:0%:98,43,0,0 -Example1_ref 10496 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:98,44,0,0 0/0:.:142:142:0:0%:98,44,0,0 -Example1_ref 10497 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:98,45,0,0 0/0:.:143:143:0:0%:98,45,0,0 -Example1_ref 10498 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:140:140:0:0%:95,45,0,0 -Example1_ref 10499 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:94,45,0,0 0/0:.:139:139:0:0%:94,45,0,0 -Example1_ref 10500 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:98,44,0,0 0/0:.:142:142:0:0%:98,44,0,0 -Example1_ref 10501 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:98,45,0,0 0/0:.:143:143:0:0%:98,45,0,0 -Example1_ref 10502 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:97,43,0,0 0/0:.:140:140:0:0%:97,43,0,0 -Example1_ref 10503 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:94,44,0,0 0/0:.:138:138:0:0%:94,44,0,0 -Example1_ref 10504 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:94,45,0,0 0/0:.:139:139:0:0%:94,45,0,0 -Example1_ref 10505 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:95,48,0,0 0/0:.:143:143:0:0%:95,48,0,0 -Example1_ref 10506 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:96,48,0,0 0/0:.:144:144:0:0%:96,48,0,0 -Example1_ref 10507 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:93,49,0,0 0/0:.:142:142:0:0%:93,49,0,0 -Example1_ref 10508 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:94,49,0,0 0/0:.:143:143:0:0%:94,49,0,0 -Example1_ref 10509 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:96,48,0,0 0/0:.:144:144:0:0%:96,48,0,0 -Example1_ref 10510 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:94,50,0,0 0/0:.:144:144:0:0%:94,50,0,0 -Example1_ref 10511 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:95,47,0,0 0/0:.:142:142:0:0%:95,47,0,0 -Example1_ref 10512 . T G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:92,49,0,1 0/0:.:142:141:1:0.7%:92,49,0,1 -Example1_ref 10513 . T C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:96,50,0,1 0/0:.:147:146:1:0.68%:96,50,0,1 -Example1_ref 10514 . G T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:91,52,1,0 0/0:.:144:143:1:0.69%:91,52,1,0 -Example1_ref 10515 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:96,52,0,0 0/0:.:148:148:0:0%:96,52,0,0 -Example1_ref 10516 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:146:146:0:0%:94,52,0,0 -Example1_ref 10517 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:96,51,0,0 0/0:.:147:147:0:0%:96,51,0,0 -Example1_ref 10518 . T C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:96,50,0,1 0/0:.:147:146:1:0.68%:96,50,0,1 -Example1_ref 10519 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:94,50,0,0 0/0:.:144:144:0:0%:94,50,0,0 -Example1_ref 10520 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:147:147:0:0%:95,52,0,0 -Example1_ref 10521 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:94,57,0,0 0/0:.:151:151:0:0%:94,57,0,0 -Example1_ref 10522 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:96,56,0,0 0/0:.:152:152:0:0%:96,56,0,0 -Example1_ref 10523 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:97,56,0,0 0/0:.:153:153:0:0%:97,56,0,0 -Example1_ref 10524 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:155:155:0:0%:93,62,0,0 -Example1_ref 10525 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:95,68,0,0 0/0:.:163:163:0:0%:95,68,0,0 -Example1_ref 10526 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:96,71,0,0 0/0:.:168:167:0:0%:96,71,0,0 -Example1_ref 10527 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:0:0%:95,75,0,0 0/0:.:171:170:0:0%:95,75,0,0 -Example1_ref 10528 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:95,78,0,0 0/0:.:173:173:0:0%:95,78,0,0 -Example1_ref 10529 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:91,79,0,0 0/0:.:170:170:0:0%:91,79,0,0 -Example1_ref 10530 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:101,80,0,0 0/0:.:181:181:0:0%:101,80,0,0 -Example1_ref 10531 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:102,79,0,0 0/0:.:181:181:0:0%:102,79,0,0 -Example1_ref 10532 . A G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:102,81,1,0 0/0:.:184:183:1:0.54%:102,81,1,0 -Example1_ref 10533 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:103,76,0,0 0/0:.:179:179:0:0%:103,76,0,0 -Example1_ref 10534 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:103,82,0,0 0/0:.:185:185:0:0%:103,82,0,0 -Example1_ref 10535 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:100,82,0,0 0/0:.:182:182:0:0%:100,82,0,0 -Example1_ref 10536 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:102,83,0,0 0/0:.:185:185:0:0%:102,83,0,0 -Example1_ref 10537 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:101,78,0,0 0/0:.:179:179:0:0%:101,78,0,0 -Example1_ref 10538 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:100,81,0,0 0/0:.:181:181:0:0%:100,81,0,0 -Example1_ref 10539 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:99,84,0,0 0/0:.:183:183:0:0%:99,84,0,0 -Example1_ref 10540 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:102,84,0,0 0/0:.:186:186:0:0%:102,84,0,0 -Example1_ref 10541 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:102,83,0,0 0/0:.:185:185:0:0%:102,83,0,0 -Example1_ref 10542 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:102,85,0,0 0/0:.:187:187:0:0%:102,85,0,0 -Example1_ref 10543 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:104,83,0,0 0/0:.:187:187:0:0%:104,83,0,0 -Example1_ref 10544 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:108,83,0,0 0/0:.:191:191:0:0%:108,83,0,0 -Example1_ref 10545 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:104,90,0,0 0/0:.:194:194:0:0%:104,90,0,0 -Example1_ref 10546 . AT A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:113,88,0,1 0/0:.:202:201:1:0.5%:113,88,0,1 -Example1_ref 10547 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:0:0%:111,89,0,0 0/0:.:201:200:0:0%:111,89,0,0 -Example1_ref 10548 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:111,91,0,0 0/0:.:202:202:0:0%:111,91,0,0 -Example1_ref 10549 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:112,91,0,0 0/0:.:203:203:0:0%:112,91,0,0 -Example1_ref 10550 . G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:110,90,0,0 0/0:.:200:200:0:0%:110,90,0,0 -Example1_ref 10551 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:107,89,0,0 0/0:.:196:196:0:0%:107,89,0,0 -Example1_ref 10552 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:106,89,0,0 0/0:.:195:195:0:0%:106,89,0,0 -Example1_ref 10553 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:111,89,0,0 0/0:.:200:200:0:0%:111,89,0,0 -Example1_ref 10554 . C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:110,88,0,0 0/0:.:198:198:0:0%:110,88,0,0 -Example1_ref 10555 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:113,90,0,0 0/0:.:203:203:0:0%:113,90,0,0 -Example1_ref 10556 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:109,90,0,0 0/0:.:199:199:0:0%:109,90,0,0 -Example1_ref 10557 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:109,89,0,0 0/0:.:198:198:0:0%:109,89,0,0 -Example1_ref 10558 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:103,90,0,0 0/0:.:193:193:0:0%:103,90,0,0 -Example1_ref 10559 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:110,87,0,0 0/0:.:197:197:0:0%:110,87,0,0 -Example1_ref 10560 . G T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:107,88,1,0 0/0:.:196:195:1:0.51%:107,88,1,0 -Example1_ref 10561 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:106,90,0,0 0/0:.:196:196:0:0%:106,90,0,0 -Example1_ref 10562 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:110,91,0,0 0/0:.:201:201:0:0%:110,91,0,0 -Example1_ref 10563 . G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:110,91,0,0 0/0:.:201:201:0:0%:110,91,0,0 -Example1_ref 10564 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:111,92,0,0 0/0:.:203:203:0:0%:111,92,0,0 -Example1_ref 10565 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:112,89,0,0 0/0:.:201:201:0:0%:112,89,0,0 -Example1_ref 10566 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:111,92,0,0 0/0:.:203:203:0:0%:111,92,0,0 -Example1_ref 10567 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:112,92,0,0 0/0:.:204:204:0:0%:112,92,0,0 -Example1_ref 10568 . C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:108,91,0,0 0/0:.:199:199:0:0%:108,91,0,0 -Example1_ref 10569 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:112,92,0,0 0/0:.:204:204:0:0%:112,92,0,0 -Example1_ref 10570 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:110,97,0,0 0/0:.:207:207:0:0%:110,97,0,0 -Example1_ref 10571 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:110,99,0,0 0/0:.:209:209:0:0%:110,99,0,0 -Example1_ref 10572 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:110,95,0,0 0/0:.:205:205:0:0%:110,95,0,0 -Example1_ref 10573 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:108,96,0,0 0/0:.:204:204:0:0%:108,96,0,0 -Example1_ref 10574 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:106,101,0,0 0/0:.:207:207:0:0%:106,101,0,0 -Example1_ref 10575 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:102,101,0,0 0/0:.:203:203:0:0%:102,101,0,0 -Example1_ref 10576 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:99,100,0,0 0/0:.:199:199:0:0%:99,100,0,0 -Example1_ref 10577 . G GCTGTCTCTTATACAC . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:94,99,1,0 0/0:.:194:193:1:0.52%:94,99,1,0 -Example1_ref 10578 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:197:197:0:0%:97,100,0,0 -Example1_ref 10579 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:98,100,0,0 0/0:.:198:198:0:0%:98,100,0,0 -Example1_ref 10580 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:96,94,0,0 0/0:.:190:190:0:0%:96,94,0,0 -Example1_ref 10581 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:197:197:0:0%:97,100,0,0 -Example1_ref 10582 . C CA . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=6.2465E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:190:5:2.56%:96,94,3,2 0/0:.:195:190:5:2.56%:96,94,3,2 -Example1_ref 10583 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:97,99,0,0 0/0:.:196:196:0:0%:97,99,0,0 -Example1_ref 10584 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:95,100,0,0 0/0:.:195:195:0:0%:95,100,0,0 -Example1_ref 10585 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:90,101,0,0 0/0:.:191:191:0:0%:90,101,0,0 -Example1_ref 10586 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:94,99,0,0 0/0:.:193:193:0:0%:94,99,0,0 -Example1_ref 10587 . A G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:94,98,0,1 0/0:.:193:192:1:0.52%:94,98,0,1 -Example1_ref 10588 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:93,100,0,0 0/0:.:193:193:0:0%:93,100,0,0 -Example1_ref 10589 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:94,100,0,0 0/0:.:194:194:0:0%:94,100,0,0 -Example1_ref 10590 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:96,103,0,0 0/0:.:199:199:0:0%:96,103,0,0 -Example1_ref 10591 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:94,101,0,0 0/0:.:195:195:0:0%:94,101,0,0 -Example1_ref 10592 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:197:197:0:0%:94,103,0,0 -Example1_ref 10593 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:95,103,0,0 0/0:.:198:198:0:0%:95,103,0,0 -Example1_ref 10594 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:96,97,0,0 0/0:.:193:193:0:0%:96,97,0,0 -Example1_ref 10595 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:94,98,0,0 0/0:.:192:192:0:0%:94,98,0,0 -Example1_ref 10596 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:96,102,0,0 0/0:.:198:198:0:0%:96,102,0,0 -Example1_ref 10597 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:98,104,0,0 0/0:.:202:202:0:0%:98,104,0,0 -Example1_ref 10598 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:96,104,0,0 0/0:.:200:200:0:0%:96,104,0,0 -Example1_ref 10599 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:197:197:0:0%:94,103,0,0 -Example1_ref 10600 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:88,101,0,0 0/0:.:189:189:0:0%:88,101,0,0 -Example1_ref 10601 . T C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:89,102,0,1 0/0:.:192:191:1:0.52%:89,102,0,1 -Example1_ref 10602 . G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:87,96,0,0 0/0:.:183:183:0:0%:87,96,0,0 -Example1_ref 10603 . G T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:84,101,1,0 0/0:.:186:185:1:0.54%:84,101,1,0 -Example1_ref 10604 . A G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:89,97,0,1 0/0:.:187:186:1:0.53%:89,97,0,1 -Example1_ref 10605 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:81,99,0,0 0/0:.:180:180:0:0%:81,99,0,0 -Example1_ref 10606 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:90,98,0,0 0/0:.:188:188:0:0%:90,98,0,0 -Example1_ref 10607 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:87,98,0,0 0/0:.:185:185:0:0%:87,98,0,0 -Example1_ref 10608 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:87,101,0,0 0/0:.:188:188:0:0%:87,101,0,0 -Example1_ref 10609 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:88,101,0,0 0/0:.:189:189:0:0%:88,101,0,0 -Example1_ref 10610 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:84,100,0,0 0/0:.:184:184:0:0%:84,100,0,0 -Example1_ref 10611 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:87,101,0,0 0/0:.:188:188:0:0%:87,101,0,0 -Example1_ref 10612 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:86,103,0,0 0/0:.:189:189:0:0%:86,103,0,0 -Example1_ref 10613 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:85,99,0,0 0/0:.:184:184:0:0%:85,99,0,0 -Example1_ref 10614 . C T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:85,100,0,1 0/0:.:186:185:1:0.54%:85,100,0,1 -Example1_ref 10615 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:86,100,0,0 0/0:.:186:186:0:0%:86,100,0,0 -Example1_ref 10616 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:85,101,0,0 0/0:.:186:186:0:0%:85,101,0,0 -Example1_ref 10617 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:187:187:0:0%:84,103,0,0 -Example1_ref 10618 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:84,101,0,0 0/0:.:185:185:0:0%:84,101,0,0 -Example1_ref 10619 . G A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:77,102,0,1 0/0:.:180:179:1:0.56%:77,102,0,1 -Example1_ref 10620 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:83,102,0,0 0/0:.:185:185:0:0%:83,102,0,0 -Example1_ref 10621 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:83,103,0,0 0/0:.:186:186:0:0%:83,103,0,0 -Example1_ref 10622 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:84,101,0,0 0/0:.:185:185:0:0%:84,101,0,0 -Example1_ref 10623 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:187:187:0:0%:84,103,0,0 -Example1_ref 10624 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:86,105,0,0 0/0:.:191:191:0:0%:86,105,0,0 -Example1_ref 10625 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:187:187:0:0%:84,103,0,0 -Example1_ref 10626 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:87,102,0,0 0/0:.:189:189:0:0%:87,102,0,0 -Example1_ref 10627 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:81,105,0,0 0/0:.:186:186:0:0%:81,105,0,0 -Example1_ref 10628 . G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:82,101,0,0 0/0:.:183:183:0:0%:82,101,0,0 -Example1_ref 10629 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:78,102,0,0 0/0:.:180:180:0:0%:78,102,0,0 -Example1_ref 10630 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:78,99,0,0 0/0:.:177:177:0:0%:78,99,0,0 -Example1_ref 10631 . GAAA G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:80,102,1,0 0/0:.:183:182:1:0.55%:80,102,1,0 -Example1_ref 10632 . A G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:179:1:0.56%:78,101,0,1 0/0:.:181:179:1:0.56%:78,101,0,1 -Example1_ref 10633 . A G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=6.8861E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:168:2:1.18%:77,91,1,1 0/0:.:170:168:2:1.18%:77,91,1,1 -Example1_ref 10634 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:178:178:0:0%:81,97,0,0 -Example1_ref 10635 . C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:175:175:0:0%:81,94,0,0 -Example1_ref 10636 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:81,95,0,0 0/0:.:176:176:0:0%:81,95,0,0 -Example1_ref 10637 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:80,96,0,0 0/0:.:176:176:0:0%:80,96,0,0 -Example1_ref 10638 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:79,96,0,0 0/0:.:175:175:0:0%:79,96,0,0 -Example1_ref 10639 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:80,96,0,0 0/0:.:176:176:0:0%:80,96,0,0 -Example1_ref 10640 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:79,98,0,0 0/0:.:177:177:0:0%:79,98,0,0 -Example1_ref 10641 . A C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:78,98,1,0 0/0:.:177:176:1:0.56%:78,98,1,0 -Example1_ref 10642 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:79,92,0,0 0/0:.:171:171:0:0%:79,92,0,0 -Example1_ref 10643 . CA C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:81,94,1,0 0/0:.:176:175:1:0.57%:81,94,1,0 -Example1_ref 10644 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:80,96,0,0 0/0:.:176:176:0:0%:80,96,0,0 -Example1_ref 10645 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:78,94,0,0 0/0:.:172:172:0:0%:78,94,0,0 -Example1_ref 10646 . A C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:78,96,1,0 0/0:.:175:174:1:0.57%:78,96,1,0 -Example1_ref 10647 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:78,94,0,0 0/0:.:172:172:0:0%:78,94,0,0 -Example1_ref 10648 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:77,96,0,0 0/0:.:173:173:0:0%:77,96,0,0 -Example1_ref 10649 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:79,92,0,0 0/0:.:171:171:0:0%:79,92,0,0 -Example1_ref 10650 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:77,93,0,0 0/0:.:170:170:0:0%:77,93,0,0 -Example1_ref 10651 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:80,92,0,0 0/0:.:172:172:0:0%:80,92,0,0 -Example1_ref 10652 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:74,90,0,0 0/0:.:164:164:0:0%:74,90,0,0 -Example1_ref 10653 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:71,92,0,0 0/0:.:163:163:0:0%:71,92,0,0 -Example1_ref 10654 . A T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:71,97,1,0 0/0:.:169:168:1:0.59%:71,97,1,0 -Example1_ref 10655 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:77,91,0,0 0/0:.:168:168:0:0%:77,91,0,0 -Example1_ref 10656 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:77,90,0,0 0/0:.:167:167:0:0%:77,90,0,0 -Example1_ref 10657 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:77,90,0,0 0/0:.:167:167:0:0%:77,90,0,0 -Example1_ref 10658 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:76,91,0,0 0/0:.:167:167:0:0%:76,91,0,0 -Example1_ref 10659 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:71,95,0,0 0/0:.:166:166:0:0%:71,95,0,0 -Example1_ref 10660 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:75,92,0,0 0/0:.:167:167:0:0%:75,92,0,0 -Example1_ref 10661 . A AAGAGAC . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.5075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:73,93,0,1 0/0:.:167:166:1:0.6%:73,93,0,1 -Example1_ref 10662 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:73,91,0,0 0/0:.:164:164:0:0%:73,91,0,0 -Example1_ref 10663 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:166:166:0:0%:73,93,0,0 -Example1_ref 10664 . T A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.5074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:75,93,0,1 0/0:.:169:168:1:0.59%:75,93,0,1 -Example1_ref 10665 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:166:166:0:0%:73,93,0,0 -Example1_ref 10666 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:157:157:0:0%:63,94,0,0 -Example1_ref 10667 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:67,92,0,0 0/0:.:159:159:0:0%:67,92,0,0 -Example1_ref 10668 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:0:0%:67,92,0,0 0/0:.:160:159:0:0%:67,92,0,0 -Example1_ref 10669 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:66,93,0,0 0/0:.:159:159:0:0%:66,93,0,0 -Example1_ref 10670 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:63,95,0,0 0/0:.:158:158:0:0%:63,95,0,0 -Example1_ref 10671 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:59,94,0,0 0/0:.:153:153:0:0%:59,94,0,0 -Example1_ref 10672 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:61,91,0,0 0/0:.:152:152:0:0%:61,91,0,0 -Example1_ref 10673 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:61,92,0,0 0/0:.:153:153:0:0%:61,92,0,0 -Example1_ref 10674 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:60,93,0,0 0/0:.:153:153:0:0%:60,93,0,0 -Example1_ref 10675 . G T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:61,93,1,0 0/0:.:155:154:1:0.65%:61,93,1,0 -Example1_ref 10676 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:63,93,0,0 0/0:.:156:156:0:0%:63,93,0,0 -Example1_ref 10677 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:63,91,0,0 0/0:.:154:154:0:0%:63,91,0,0 -Example1_ref 10678 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:63,93,0,0 0/0:.:156:156:0:0%:63,93,0,0 -Example1_ref 10679 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:63,91,0,0 0/0:.:154:154:0:0%:63,91,0,0 -Example1_ref 10680 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:152:152:0:0%:62,90,0,0 -Example1_ref 10681 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:152:152:0:0%:62,90,0,0 -Example1_ref 10682 . C A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:63,88,0,1 0/0:.:152:151:1:0.66%:63,88,0,1 -Example1_ref 10683 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:63,86,0,0 0/0:.:149:149:0:0%:63,86,0,0 -Example1_ref 10684 . T A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:63,85,0,1 0/0:.:149:148:1:0.67%:63,85,0,1 -Example1_ref 10685 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:61,90,0,0 0/0:.:151:151:0:0%:61,90,0,0 -Example1_ref 10686 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:60,93,0,0 0/0:.:153:153:0:0%:60,93,0,0 -Example1_ref 10687 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:0:0%:62,91,0,0 0/0:.:154:153:0:0%:62,91,0,0 -Example1_ref 10688 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:152:152:0:0%:62,90,0,0 -Example1_ref 10689 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:62,91,0,0 0/0:.:153:153:0:0%:62,91,0,0 -Example1_ref 10690 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:62,91,0,0 0/0:.:153:153:0:0%:62,91,0,0 -Example1_ref 10691 . G T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=7.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:60,91,1,0 0/0:.:152:151:1:0.66%:60,91,1,0 -Example1_ref 10692 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:60,90,0,0 0/0:.:150:150:0:0%:60,90,0,0 -Example1_ref 10693 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:62,89,0,0 0/0:.:151:151:0:0%:62,89,0,0 -Example1_ref 10694 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:59,90,0,0 0/0:.:149:149:0:0%:59,90,0,0 -Example1_ref 10695 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 10696 . A G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:61,86,0,1 0/0:.:148:147:1:0.68%:61,86,0,1 -Example1_ref 10697 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:62,87,0,0 0/0:.:149:149:0:0%:62,87,0,0 -Example1_ref 10698 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:64,86,0,0 0/0:.:150:150:0:0%:64,86,0,0 -Example1_ref 10699 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:65,83,0,0 0/0:.:148:148:0:0%:65,83,0,0 -Example1_ref 10700 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:65,88,0,0 0/0:.:153:153:0:0%:65,88,0,0 -Example1_ref 10701 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:66,83,0,0 0/0:.:149:149:0:0%:66,83,0,0 -Example1_ref 10702 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:68,84,0,0 0/0:.:152:152:0:0%:68,84,0,0 -Example1_ref 10703 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:68,85,0,0 0/0:.:153:153:0:0%:68,85,0,0 -Example1_ref 10704 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:67,83,0,0 0/0:.:150:150:0:0%:67,83,0,0 -Example1_ref 10705 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:76,78,0,0 0/0:.:154:154:0:0%:76,78,0,0 -Example1_ref 10706 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:76,83,0,0 0/0:.:159:159:0:0%:76,83,0,0 -Example1_ref 10707 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:76,80,0,0 0/0:.:156:156:0:0%:76,80,0,0 -Example1_ref 10708 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:77,80,0,0 0/0:.:157:157:0:0%:77,80,0,0 -Example1_ref 10709 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:75,83,0,0 0/0:.:158:158:0:0%:75,83,0,0 -Example1_ref 10710 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:77,83,0,0 0/0:.:160:160:0:0%:77,83,0,0 -Example1_ref 10711 . A AG . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=6.8872E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:153:2:1.29%:76,77,2,0 0/0:.:155:153:2:1.29%:76,77,2,0 -Example1_ref 10712 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:72,66,0,0 0/0:.:138:138:0:0%:72,66,0,0 -Example1_ref 10713 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:69,66,0,0 0/0:.:135:135:0:0%:69,66,0,0 -Example1_ref 10714 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:69,48,0,0 0/0:.:117:117:0:0%:69,48,0,0 -Example1_ref 10715 . GA G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=7.511E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:1:0.88%:64,49,1,0 0/0:.:114:113:1:0.88%:64,49,1,0 -Example1_ref 10716 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:0:0%:64,45,0,0 0/0:.:110:109:0:0%:64,45,0,0 -Example1_ref 10717 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:74,45,0,0 0/0:.:119:119:0:0%:74,45,0,0 -Example1_ref 10718 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:74,46,0,0 0/0:.:120:120:0:0%:74,46,0,0 -Example1_ref 10719 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:117:117:0:0%:70,47,0,0 -Example1_ref 10720 . T TCTAATGATATA . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:69,50,1,0 0/0:.:120:119:1:0.83%:69,50,1,0 -Example1_ref 10721 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 10722 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:66,52,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 10723 . C T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.5108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:64,51,1,0 0/0:.:116:115:1:0.86%:64,51,1,0 -Example1_ref 10724 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 10725 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 10726 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 10727 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:65,47,0,0 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 10728 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 10729 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:66,46,0,0 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 10730 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:65,46,0,0 0/0:.:111:111:0:0%:65,46,0,0 -Example1_ref 10731 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 10732 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 10733 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:65,45,0,0 0/0:.:110:110:0:0%:65,45,0,0 -Example1_ref 10734 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:63,48,0,0 0/0:.:111:111:0:0%:63,48,0,0 -Example1_ref 10735 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 10736 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:63,48,0,0 0/0:.:111:111:0:0%:63,48,0,0 -Example1_ref 10737 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:62,46,0,0 0/0:.:108:108:0:0%:62,46,0,0 -Example1_ref 10738 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:111:111:0:0%:62,49,0,0 -Example1_ref 10739 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:109:109:0:0%:61,48,0,0 -Example1_ref 10740 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:108:108:0:0%:61,47,0,0 -Example1_ref 10741 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:62,47,0,0 0/0:.:109:109:0:0%:62,47,0,0 -Example1_ref 10742 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:63,46,0,0 0/0:.:109:109:0:0%:63,46,0,0 -Example1_ref 10743 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 10744 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 10745 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 10746 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 10747 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:65,50,0,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 10748 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:116:116:0:0%:66,50,0,0 -Example1_ref 10749 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:67,51,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 10750 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:0:0%:67,50,0,0 0/0:.:118:117:0:0%:67,50,0,0 -Example1_ref 10751 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:118:118:0:0%:68,50,0,0 -Example1_ref 10752 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:116:116:0:0%:66,50,0,0 -Example1_ref 10753 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:66,51,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 10754 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:116:116:0:0%:67,49,0,0 -Example1_ref 10755 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:66,51,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 10756 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:0:0%:66,49,0,0 0/0:.:116:115:0:0%:66,49,0,0 -Example1_ref 10757 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 10758 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 10759 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:65,50,0,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 10760 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:61,43,0,0 0/0:.:104:104:0:0%:61,43,0,0 -Example1_ref 10761 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:108:108:0:0%:65,43,0,0 -Example1_ref 10762 . T A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:64,44,1,0 0/0:.:109:108:1:0.92%:64,44,1,0 -Example1_ref 10763 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:108:108:0:0%:65,43,0,0 -Example1_ref 10764 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:67,45,0,0 0/0:.:112:112:0:0%:67,45,0,0 -Example1_ref 10765 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:117:117:0:0%:73,44,0,0 -Example1_ref 10766 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:115:115:0:0%:71,44,0,0 -Example1_ref 10767 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:117:117:0:0%:72,45,0,0 -Example1_ref 10768 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:118:118:0:0%:73,45,0,0 -Example1_ref 10769 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:118:118:0:0%:73,45,0,0 -Example1_ref 10770 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:118:118:0:0%:73,45,0,0 -Example1_ref 10771 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:117:117:0:0%:73,44,0,0 -Example1_ref 10772 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:72,46,0,0 0/0:.:118:118:0:0%:72,46,0,0 -Example1_ref 10773 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:117:117:0:0%:73,44,0,0 -Example1_ref 10774 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:117:117:0:0%:72,45,0,0 -Example1_ref 10775 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:75,45,0,0 0/0:.:120:120:0:0%:75,45,0,0 -Example1_ref 10776 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:75,45,0,0 0/0:.:120:120:0:0%:75,45,0,0 -Example1_ref 10777 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:74,45,0,0 0/0:.:119:119:0:0%:74,45,0,0 -Example1_ref 10778 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:74,46,0,0 0/0:.:120:120:0:0%:74,46,0,0 -Example1_ref 10779 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:74,44,0,0 0/0:.:118:118:0:0%:74,44,0,0 -Example1_ref 10780 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:120:120:0:0%:73,47,0,0 -Example1_ref 10781 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:123:123:0:0%:75,48,0,0 -Example1_ref 10782 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:74,49,0,0 0/0:.:123:123:0:0%:74,49,0,0 -Example1_ref 10783 . C CCT . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:72,47,1,0 0/0:.:120:119:1:0.83%:72,47,1,0 -Example1_ref 10784 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:123:123:0:0%:75,48,0,0 -Example1_ref 10785 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:74,47,0,0 0/0:.:121:121:0:0%:74,47,0,0 -Example1_ref 10786 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:74,47,0,0 0/0:.:121:121:0:0%:74,47,0,0 -Example1_ref 10787 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:118:118:0:0%:73,45,0,0 -Example1_ref 10788 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:122:122:0:0%:73,49,0,0 -Example1_ref 10789 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:75,46,0,0 0/0:.:121:121:0:0%:75,46,0,0 -Example1_ref 10790 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:75,47,0,0 0/0:.:122:122:0:0%:75,47,0,0 -Example1_ref 10791 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:0:0%:77,50,0,0 0/0:.:128:127:0:0%:77,50,0,0 -Example1_ref 10792 . C A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:76,49,0,1 0/0:.:126:125:1:0.79%:76,49,0,1 -Example1_ref 10793 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:123:123:0:0%:75,48,0,0 -Example1_ref 10794 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:125:125:0:0%:76,49,0,0 -Example1_ref 10795 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:124:124:0:0%:74,50,0,0 -Example1_ref 10796 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:125:125:0:0%:71,54,0,0 -Example1_ref 10797 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:74,55,0,0 0/0:.:129:129:0:0%:74,55,0,0 -Example1_ref 10798 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:126:126:0:0%:72,54,0,0 -Example1_ref 10799 . G GA . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.5098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:74,53,0,1 0/0:.:128:127:1:0.78%:74,53,0,1 -Example1_ref 10800 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:75,51,0,0 0/0:.:126:126:0:0%:75,51,0,0 -Example1_ref 10801 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:122:122:0:0%:73,49,0,0 -Example1_ref 10802 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:71,51,0,0 0/0:.:123:122:0:0%:71,51,0,0 -Example1_ref 10803 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:125:125:0:0%:75,50,0,0 -Example1_ref 10804 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:129:129:0:0%:75,54,0,0 -Example1_ref 10805 . A ATCTGTC . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:74,54,1,0 0/0:.:129:128:1:0.78%:74,54,1,0 -Example1_ref 10806 . T A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:72,54,1,0 0/0:.:127:126:1:0.79%:72,54,1,0 -Example1_ref 10807 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:128:128:0:0%:74,54,0,0 -Example1_ref 10808 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:74,55,0,0 0/0:.:129:129:0:0%:74,55,0,0 -Example1_ref 10809 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:75,55,0,0 0/0:.:130:130:0:0%:75,55,0,0 -Example1_ref 10810 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:131:131:0:0%:76,55,0,0 -Example1_ref 10811 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:129:129:0:0%:75,54,0,0 -Example1_ref 10812 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:127:127:0:0%:74,53,0,0 -Example1_ref 10813 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:128:128:0:0%:74,54,0,0 -Example1_ref 10814 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:72,55,0,0 0/0:.:127:127:0:0%:72,55,0,0 -Example1_ref 10815 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:72,55,0,0 0/0:.:127:127:0:0%:72,55,0,0 -Example1_ref 10816 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:127:127:0:0%:73,54,0,0 -Example1_ref 10817 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:74,56,0,0 0/0:.:130:130:0:0%:74,56,0,0 -Example1_ref 10818 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:76,56,0,0 0/0:.:132:132:0:0%:76,56,0,0 -Example1_ref 10819 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:128:128:0:0%:75,53,0,0 -Example1_ref 10820 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:129:129:0:0%:75,54,0,0 -Example1_ref 10821 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 10822 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:131:131:0:0%:74,57,0,0 -Example1_ref 10823 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 10824 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:130:130:0:0%:73,57,0,0 -Example1_ref 10825 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:129:129:0:0%:72,57,0,0 -Example1_ref 10826 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:134:134:0:0%:77,57,0,0 -Example1_ref 10827 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 10828 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:130:130:0:0%:73,57,0,0 -Example1_ref 10829 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:77,56,0,0 0/0:.:133:133:0:0%:77,56,0,0 -Example1_ref 10830 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:128:128:0:0%:72,56,0,0 -Example1_ref 10831 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:129:129:0:0%:73,56,0,0 -Example1_ref 10832 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:133:133:0:0%:76,57,0,0 -Example1_ref 10833 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:76,54,0,0 0/0:.:130:130:0:0%:76,54,0,0 -Example1_ref 10834 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:77,55,0,0 0/0:.:132:132:0:0%:77,55,0,0 -Example1_ref 10835 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:85,57,0,0 0/0:.:142:142:0:0%:85,57,0,0 -Example1_ref 10836 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:83,59,0,0 0/0:.:142:142:0:0%:83,59,0,0 -Example1_ref 10837 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:85,61,0,0 0/0:.:146:146:0:0%:85,61,0,0 -Example1_ref 10838 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:150:150:0:0%:87,63,0,0 -Example1_ref 10839 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:88,63,0,0 0/0:.:151:151:0:0%:88,63,0,0 -Example1_ref 10840 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:91,65,0,0 0/0:.:156:156:0:0%:91,65,0,0 -Example1_ref 10841 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:154:154:0:0%:90,64,0,0 -Example1_ref 10842 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:89,65,0,0 0/0:.:154:154:0:0%:89,65,0,0 -Example1_ref 10843 . CA C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:94,65,1,0 0/0:.:160:159:1:0.62%:94,65,1,0 -Example1_ref 10844 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:0:0%:92,65,0,0 0/0:.:158:157:0:0%:92,65,0,0 -Example1_ref 10845 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:95,63,0,0 0/0:.:158:158:0:0%:95,63,0,0 -Example1_ref 10846 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:95,66,0,0 0/0:.:161:161:0:0%:95,66,0,0 -Example1_ref 10847 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 10848 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 10849 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:164:164:0:0%:99,65,0,0 -Example1_ref 10850 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:105,63,0,0 0/0:.:168:168:0:0%:105,63,0,0 -Example1_ref 10851 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:104,63,0,0 0/0:.:167:167:0:0%:104,63,0,0 -Example1_ref 10852 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:108,65,0,0 0/0:.:173:173:0:0%:108,65,0,0 -Example1_ref 10853 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:106,69,0,0 0/0:.:175:175:0:0%:106,69,0,0 -Example1_ref 10854 . T C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:107,67,1,0 0/0:.:175:174:1:0.57%:107,67,1,0 -Example1_ref 10855 . A G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:108,68,0,1 0/0:.:177:176:1:0.56%:108,68,0,1 -Example1_ref 10856 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:106,68,0,0 0/0:.:174:174:0:0%:106,68,0,0 -Example1_ref 10857 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:110,70,0,0 0/0:.:180:180:0:0%:110,70,0,0 -Example1_ref 10858 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:106,68,0,0 0/0:.:174:174:0:0%:106,68,0,0 -Example1_ref 10859 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:108,68,0,0 0/0:.:176:176:0:0%:108,68,0,0 -Example1_ref 10860 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:106,69,0,0 0/0:.:175:175:0:0%:106,69,0,0 -Example1_ref 10861 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:108,69,0,0 0/0:.:177:177:0:0%:108,69,0,0 -Example1_ref 10862 . G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:106,70,0,0 0/0:.:176:176:0:0%:106,70,0,0 -Example1_ref 10863 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:106,67,0,0 0/0:.:173:173:0:0%:106,67,0,0 -Example1_ref 10864 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:106,67,0,0 0/0:.:173:173:0:0%:106,67,0,0 -Example1_ref 10865 . G T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.5071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:106,69,1,0 0/0:.:176:175:1:0.57%:106,69,1,0 -Example1_ref 10866 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:105,67,0,0 0/0:.:172:172:0:0%:105,67,0,0 -Example1_ref 10867 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:108,69,0,0 0/0:.:177:177:0:0%:108,69,0,0 -Example1_ref 10868 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:110,70,0,0 0/0:.:180:180:0:0%:110,70,0,0 -Example1_ref 10869 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:109,69,0,0 0/0:.:178:178:0:0%:109,69,0,0 -Example1_ref 10870 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:110,69,0,0 0/0:.:179:179:0:0%:110,69,0,0 -Example1_ref 10871 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:109,70,0,0 0/0:.:179:179:0:0%:109,70,0,0 -Example1_ref 10872 . G T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:178:1:0.56%:108,70,1,0 0/0:.:180:178:1:0.56%:108,70,1,0 -Example1_ref 10873 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:106,68,0,0 0/0:.:174:174:0:0%:106,68,0,0 -Example1_ref 10874 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:107,72,0,0 0/0:.:179:179:0:0%:107,72,0,0 -Example1_ref 10875 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:107,69,0,0 0/0:.:176:176:0:0%:107,69,0,0 -Example1_ref 10876 . A C . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=7.5072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:105,69,1,0 0/0:.:175:174:1:0.57%:105,69,1,0 -Example1_ref 10877 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:112,70,0,0 0/0:.:182:182:0:0%:112,70,0,0 -Example1_ref 10878 . G T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.5069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:111,70,1,0 0/0:.:182:181:1:0.55%:111,70,1,0 -Example1_ref 10879 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:118,69,0,0 0/0:.:187:187:0:0%:118,69,0,0 -Example1_ref 10880 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:114,73,0,0 0/0:.:187:187:0:0%:114,73,0,0 -Example1_ref 10881 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:116,73,0,0 0/0:.:189:189:0:0%:116,73,0,0 -Example1_ref 10882 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:115,73,0,0 0/0:.:188:188:0:0%:115,73,0,0 -Example1_ref 10883 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:119,74,0,0 0/0:.:193:193:0:0%:119,74,0,0 -Example1_ref 10884 . G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:116,74,0,0 0/0:.:190:190:0:0%:116,74,0,0 -Example1_ref 10885 . G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:113,73,0,0 0/0:.:186:186:0:0%:113,73,0,0 -Example1_ref 10886 . G GC . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=7.5066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:113,77,1,0 0/0:.:191:190:1:0.52%:113,77,1,0 -Example1_ref 10887 . T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:121,74,0,0 0/0:.:195:195:0:0%:121,74,0,0 -Example1_ref 10888 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:114,75,0,0 0/0:.:189:189:0:0%:114,75,0,0 -Example1_ref 10889 . A G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:187:1:0.53%:112,75,1,0 0/0:.:189:187:1:0.53%:112,75,1,0 -Example1_ref 10890 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:123,71,0,0 0/0:.:194:194:0:0%:123,71,0,0 -Example1_ref 10891 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:121,73,0,0 0/0:.:194:194:0:0%:121,73,0,0 -Example1_ref 10892 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:120,74,0,0 0/0:.:194:194:0:0%:120,74,0,0 -Example1_ref 10893 . C A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:119,67,0,1 0/0:.:187:186:1:0.53%:119,67,0,1 -Example1_ref 10894 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:118,76,0,0 0/0:.:194:194:0:0%:118,76,0,0 -Example1_ref 10895 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:111,77,0,0 0/0:.:188:188:0:0%:111,77,0,0 -Example1_ref 10896 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:189:189:0:0%:111,78,0,0 -Example1_ref 10897 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:112,82,0,0 0/0:.:194:194:0:0%:112,82,0,0 -Example1_ref 10898 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:111,81,0,0 0/0:.:192:192:0:0%:111,81,0,0 -Example1_ref 10899 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:113,81,0,0 0/0:.:194:194:0:0%:113,81,0,0 -Example1_ref 10900 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:112,81,0,0 0/0:.:193:193:0:0%:112,81,0,0 -Example1_ref 10901 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:111,83,0,0 0/0:.:194:194:0:0%:111,83,0,0 -Example1_ref 10902 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:112,85,0,0 0/0:.:197:197:0:0%:112,85,0,0 -Example1_ref 10903 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:109,85,0,0 0/0:.:194:194:0:0%:109,85,0,0 -Example1_ref 10904 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:112,86,0,0 0/0:.:198:198:0:0%:112,86,0,0 -Example1_ref 10905 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:110,85,0,0 0/0:.:195:195:0:0%:110,85,0,0 -Example1_ref 10906 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:112,86,0,0 0/0:.:198:198:0:0%:112,86,0,0 -Example1_ref 10907 . G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:103,83,0,0 0/0:.:186:186:0:0%:103,83,0,0 -Example1_ref 10908 . AC A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=7.5065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:106,85,0,1 0/0:.:192:191:1:0.52%:106,85,0,1 -Example1_ref 10909 . C . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:0:0%:111,81,0,0 0/0:.:193:192:0:0%:111,81,0,0 -Example1_ref 10910 . A G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:111,85,0,1 0/0:.:197:196:1:0.51%:111,85,0,1 -Example1_ref 10911 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:113,87,0,0 0/0:.:200:200:0:0%:113,87,0,0 -Example1_ref 10912 . T A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=6.8844E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:198:2:1%:111,87,0,2 0/0:.:200:198:2:1%:111,87,0,2 -Example1_ref 10913 . C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:107,91,0,0 0/0:.:198:198:0:0%:107,91,0,0 -Example1_ref 10914 . A G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:105,95,0,1 0/0:.:201:200:1:0.5%:105,95,0,1 -Example1_ref 10915 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:113,97,0,0 0/0:.:210:210:0:0%:113,97,0,0 -Example1_ref 10916 . G . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:111,100,0,0 0/0:.:211:211:0:0%:111,100,0,0 -Example1_ref 10917 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:213:213:0:0%:109,104,0,0 -Example1_ref 10918 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:110,104,0,0 0/0:.:214:214:0:0%:110,104,0,0 -Example1_ref 10919 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:218:218:0:0%:113,105,0,0 -Example1_ref 10920 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:112,105,0,0 0/0:.:217:217:0:0%:112,105,0,0 -Example1_ref 10921 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:215:215:0:0%:111,104,0,0 -Example1_ref 10922 . G T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:217:1:0.46%:112,105,1,0 0/0:.:219:217:1:0.46%:112,105,1,0 -Example1_ref 10923 . C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:222:222:0:0%:115,107,0,0 -Example1_ref 10924 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:222:222:0:0%:115,107,0,0 -Example1_ref 10925 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:113,108,0,0 0/0:.:221:221:0:0%:113,108,0,0 -Example1_ref 10926 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:112,108,0,0 0/0:.:220:220:0:0%:112,108,0,0 -Example1_ref 10927 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:112,108,0,0 0/0:.:220:220:0:0%:112,108,0,0 -Example1_ref 10928 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:113,109,0,0 0/0:.:222:222:0:0%:113,109,0,0 -Example1_ref 10929 . C A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:116,104,0,1 0/0:.:221:220:1:0.45%:116,104,0,1 -Example1_ref 10930 . C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:115,108,0,0 0/0:.:223:223:0:0%:115,108,0,0 -Example1_ref 10931 . A G . PASS DP=436;SS=1;SSC=2;GPV=5.1982E-41;SPV=5.4272E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/1:.:218:157:60:27.65%:80,77,28,32 0/1:.:218:157:60:27.65%:80,77,28,32 -Example1_ref 10932 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:111,101,0,0 0/0:.:212:212:0:0%:111,101,0,0 -Example1_ref 10933 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:111,109,0,0 0/0:.:220:220:0:0%:111,109,0,0 -Example1_ref 10934 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:110,111,0,0 0/0:.:221:221:0:0%:110,111,0,0 -Example1_ref 10935 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:106,111,0,0 0/0:.:217:217:0:0%:106,111,0,0 -Example1_ref 10936 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:108,107,0,0 0/0:.:215:215:0:0%:108,107,0,0 -Example1_ref 10937 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:111,107,0,0 0/0:.:218:218:0:0%:111,107,0,0 -Example1_ref 10938 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:111,103,0,0 0/0:.:214:214:0:0%:111,103,0,0 -Example1_ref 10939 . A T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:111,105,0,1 0/0:.:217:216:1:0.46%:111,105,0,1 -Example1_ref 10940 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:209:209:0:0%:109,100,0,0 -Example1_ref 10941 . C A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:1:0.48%:106,101,0,1 0/0:.:209:207:1:0.48%:106,101,0,1 -Example1_ref 10942 . C A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:104,100,1,0 0/0:.:205:204:1:0.49%:104,100,1,0 -Example1_ref 10943 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:107,104,0,0 0/0:.:211:211:0:0%:107,104,0,0 -Example1_ref 10944 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:108,104,0,0 0/0:.:212:212:0:0%:108,104,0,0 -Example1_ref 10945 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:111,103,0,0 0/0:.:214:214:0:0%:111,103,0,0 -Example1_ref 10946 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:113,106,0,0 0/0:.:219:219:0:0%:113,106,0,0 -Example1_ref 10947 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:218:218:0:0%:113,105,0,0 -Example1_ref 10948 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:215:215:0:0%:111,104,0,0 -Example1_ref 10949 . T C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=6.8838E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:213:2:0.93%:110,103,1,1 0/0:.:215:213:2:0.93%:110,103,1,1 -Example1_ref 10950 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:110,105,0,0 0/0:.:215:215:0:0%:110,105,0,0 -Example1_ref 10951 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:113,101,0,0 0/0:.:214:214:0:0%:113,101,0,0 -Example1_ref 10952 . G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:111,101,0,0 0/0:.:212:212:0:0%:111,101,0,0 -Example1_ref 10953 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:111,102,0,0 0/0:.:213:213:0:0%:111,102,0,0 -Example1_ref 10954 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:107,97,0,0 0/0:.:204:204:0:0%:107,97,0,0 -Example1_ref 10955 . T C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:106,102,0,1 0/0:.:209:208:1:0.48%:106,102,0,1 -Example1_ref 10956 . A G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:107,102,0,1 0/0:.:210:209:1:0.48%:107,102,0,1 -Example1_ref 10957 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:107,101,0,0 0/0:.:208:208:0:0%:107,101,0,0 -Example1_ref 10958 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:107,103,0,0 0/0:.:210:210:0:0%:107,103,0,0 -Example1_ref 10959 . GA G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:108,103,0,1 0/0:.:212:211:1:0.47%:108,103,0,1 -Example1_ref 10960 . A T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:1:0.48%:105,102,1,0 0/0:.:209:207:1:0.48%:105,102,1,0 -Example1_ref 10961 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:215:215:0:0%:111,104,0,0 -Example1_ref 10962 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:109,102,0,0 0/0:.:211:211:0:0%:109,102,0,0 -Example1_ref 10963 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:107,104,0,0 0/0:.:211:211:0:0%:107,104,0,0 -Example1_ref 10964 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:109,105,0,0 0/0:.:214:214:0:0%:109,105,0,0 -Example1_ref 10965 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:110,104,0,0 0/0:.:214:214:0:0%:110,104,0,0 -Example1_ref 10966 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:108,105,0,0 0/0:.:213:213:0:0%:108,105,0,0 -Example1_ref 10967 . A ACTGTC . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:103,106,1,0 0/0:.:210:209:1:0.48%:103,106,1,0 -Example1_ref 10968 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:108,99,0,0 0/0:.:207:207:0:0%:108,99,0,0 -Example1_ref 10969 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:109,101,0,0 0/0:.:210:210:0:0%:109,101,0,0 -Example1_ref 10970 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:109,101,0,0 0/0:.:210:210:0:0%:109,101,0,0 -Example1_ref 10971 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:106,96,0,0 0/0:.:202:202:0:0%:106,96,0,0 -Example1_ref 10972 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:108,95,0,0 0/0:.:203:203:0:0%:108,95,0,0 -Example1_ref 10973 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:108,100,0,0 0/0:.:208:208:0:0%:108,100,0,0 -Example1_ref 10974 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:112,100,0,0 0/0:.:212:212:0:0%:112,100,0,0 -Example1_ref 10975 . A G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:110,99,0,1 0/0:.:210:209:1:0.48%:110,99,0,1 -Example1_ref 10976 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:117,100,0,0 0/0:.:217:217:0:0%:117,100,0,0 -Example1_ref 10977 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:113,99,0,0 0/0:.:212:212:0:0%:113,99,0,0 -Example1_ref 10978 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:214:214:0:0%:112,102,0,0 -Example1_ref 10979 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:116,103,0,0 0/0:.:219:219:0:0%:116,103,0,0 -Example1_ref 10980 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:116,108,0,0 0/0:.:224:224:0:0%:116,108,0,0 -Example1_ref 10981 . TA T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:114,106,0,1 0/0:.:221:220:1:0.45%:114,106,0,1 -Example1_ref 10982 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:218:218:0:0%:113,105,0,0 -Example1_ref 10983 . A C . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:113,106,1,0 0/0:.:220:219:1:0.45%:113,106,1,0 -Example1_ref 10984 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:117,102,0,0 0/0:.:219:219:0:0%:117,102,0,0 -Example1_ref 10985 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:115,105,0,0 0/0:.:220:220:0:0%:115,105,0,0 -Example1_ref 10986 . A C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:110,102,1,0 0/0:.:213:212:1:0.47%:110,102,1,0 -Example1_ref 10987 . T C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:112,104,1,0 0/0:.:217:216:1:0.46%:112,104,1,0 -Example1_ref 10988 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:115,105,0,0 0/0:.:220:220:0:0%:115,105,0,0 -Example1_ref 10989 . T C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:113,103,1,0 0/0:.:217:216:1:0.46%:113,103,1,0 -Example1_ref 10990 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:114,102,0,0 0/0:.:216:216:0:0%:114,102,0,0 -Example1_ref 10991 . G GC . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:111,102,1,0 0/0:.:214:213:1:0.47%:111,102,1,0 -Example1_ref 10992 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:116,102,0,0 0/0:.:218:218:0:0%:116,102,0,0 -Example1_ref 10993 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:214:214:0:0%:112,102,0,0 -Example1_ref 10994 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:115,99,0,0 0/0:.:214:214:0:0%:115,99,0,0 -Example1_ref 10995 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:118,101,0,0 0/0:.:219:219:0:0%:118,101,0,0 -Example1_ref 10996 . A AT . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=6.5735E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:212:3:1.4%:112,100,2,1 0/0:.:215:212:3:1.4%:112,100,2,1 -Example1_ref 10997 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:114,95,0,0 0/0:.:209:209:0:0%:114,95,0,0 -Example1_ref 10998 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:110,97,0,0 0/0:.:207:207:0:0%:110,97,0,0 -Example1_ref 10999 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:112,94,0,0 0/0:.:206:206:0:0%:112,94,0,0 -Example1_ref 11000 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:110,98,0,0 0/0:.:208:208:0:0%:110,98,0,0 -Example1_ref 11001 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:114,96,0,0 0/0:.:210:210:0:0%:114,96,0,0 -Example1_ref 11002 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:114,96,0,0 0/0:.:210:210:0:0%:114,96,0,0 -Example1_ref 11003 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:117,99,0,0 0/0:.:216:216:0:0%:117,99,0,0 -Example1_ref 11004 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:115,97,0,0 0/0:.:212:212:0:0%:115,97,0,0 -Example1_ref 11005 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:119,92,0,0 0/0:.:211:211:0:0%:119,92,0,0 -Example1_ref 11006 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:117,95,0,0 0/0:.:212:212:0:0%:117,95,0,0 -Example1_ref 11007 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:133,97,0,0 0/0:.:230:230:0:0%:133,97,0,0 -Example1_ref 11008 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:133,98,0,0 0/0:.:231:231:0:0%:133,98,0,0 -Example1_ref 11009 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:132,94,0,0 0/0:.:226:226:0:0%:132,94,0,0 -Example1_ref 11010 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:134,97,0,0 0/0:.:231:231:0:0%:134,97,0,0 -Example1_ref 11011 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:134,102,0,0 0/0:.:236:236:0:0%:134,102,0,0 -Example1_ref 11012 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:132,103,0,0 0/0:.:235:235:0:0%:132,103,0,0 -Example1_ref 11013 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:135,103,0,0 0/0:.:238:238:0:0%:135,103,0,0 -Example1_ref 11014 . A T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:132,102,1,0 0/0:.:235:234:1:0.43%:132,102,1,0 -Example1_ref 11015 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:0:0%:135,102,0,0 0/0:.:238:237:0:0%:135,102,0,0 -Example1_ref 11016 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:135,95,0,0 0/0:.:230:230:0:0%:135,95,0,0 -Example1_ref 11017 . G A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:140,97,0,1 0/0:.:238:237:1:0.42%:140,97,0,1 -Example1_ref 11018 . G T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:1:0.43%:136,96,0,1 0/0:.:233:232:1:0.43%:136,96,0,1 -Example1_ref 11019 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:144,98,0,0 0/0:.:242:242:0:0%:144,98,0,0 -Example1_ref 11020 . G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:142,99,0,0 0/0:.:241:241:0:0%:142,99,0,0 -Example1_ref 11021 . AT A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:1:0.41%:141,101,1,0 0/0:.:243:242:1:0.41%:141,101,1,0 -Example1_ref 11022 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:0:0%:142,98,0,0 0/0:.:241:240:0:0%:142,98,0,0 -Example1_ref 11023 . G T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:141,99,0,1 0/0:.:241:240:1:0.41%:141,99,0,1 -Example1_ref 11024 . G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:141,98,0,0 0/0:.:239:239:0:0%:141,98,0,0 -Example1_ref 11025 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:134,100,0,0 0/0:.:234:234:0:0%:134,100,0,0 -Example1_ref 11026 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:136,98,0,0 0/0:.:234:234:0:0%:136,98,0,0 -Example1_ref 11027 . G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:150,93,0,0 0/0:.:243:243:0:0%:150,93,0,0 -Example1_ref 11028 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:154,94,0,0 0/0:.:248:248:0:0%:154,94,0,0 -Example1_ref 11029 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:242:0:0%:152,90,0,0 0/0:.:244:242:0:0%:152,90,0,0 -Example1_ref 11030 . C A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:151,96,0,1 0/0:.:248:247:1:0.4%:151,96,0,1 -Example1_ref 11031 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:152,98,0,0 0/0:.:250:250:0:0%:152,98,0,0 -Example1_ref 11032 . A T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:149,98,1,0 0/0:.:248:247:1:0.4%:149,98,1,0 -Example1_ref 11033 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:149,98,0,0 0/0:.:247:247:0:0%:149,98,0,0 -Example1_ref 11034 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:148,100,0,0 0/0:.:248:248:0:0%:148,100,0,0 -Example1_ref 11035 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:152,99,0,0 0/0:.:251:251:0:0%:152,99,0,0 -Example1_ref 11036 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:148,98,0,0 0/0:.:246:246:0:0%:148,98,0,0 -Example1_ref 11037 . A G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:148,98,0,1 0/0:.:247:246:1:0.4%:148,98,0,1 -Example1_ref 11038 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:142,100,0,0 0/0:.:242:242:0:0%:142,100,0,0 -Example1_ref 11039 . G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:139,100,0,0 0/0:.:239:239:0:0%:139,100,0,0 -Example1_ref 11040 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:140,102,0,0 0/0:.:242:242:0:0%:140,102,0,0 -Example1_ref 11041 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:141,103,0,0 0/0:.:244:244:0:0%:141,103,0,0 -Example1_ref 11042 . C . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:140,99,0,0 0/0:.:239:239:0:0%:140,99,0,0 -Example1_ref 11043 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:139,101,0,0 0/0:.:240:240:0:0%:139,101,0,0 -Example1_ref 11044 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:139,98,0,0 0/0:.:237:237:0:0%:139,98,0,0 -Example1_ref 11045 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:139,99,0,0 0/0:.:238:238:0:0%:139,99,0,0 -Example1_ref 11046 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:138,97,0,0 0/0:.:235:235:0:0%:138,97,0,0 -Example1_ref 11047 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:136,97,0,0 0/0:.:233:233:0:0%:136,97,0,0 -Example1_ref 11048 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:136,100,0,0 0/0:.:236:236:0:0%:136,100,0,0 -Example1_ref 11049 . T C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:136,101,0,1 0/0:.:238:237:1:0.42%:136,101,0,1 -Example1_ref 11050 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:137,102,0,0 0/0:.:239:239:0:0%:137,102,0,0 -Example1_ref 11051 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:138,101,0,0 0/0:.:239:239:0:0%:138,101,0,0 -Example1_ref 11052 . A G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:132,104,1,0 0/0:.:237:236:1:0.42%:132,104,1,0 -Example1_ref 11053 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:137,104,0,0 0/0:.:241:241:0:0%:137,104,0,0 -Example1_ref 11054 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:138,107,0,0 0/0:.:245:245:0:0%:138,107,0,0 -Example1_ref 11055 . A T . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:142,113,0,1 0/0:.:256:255:1:0.39%:142,113,0,1 -Example1_ref 11056 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:139,114,0,0 0/0:.:253:253:0:0%:139,114,0,0 -Example1_ref 11057 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:0:0%:141,115,0,0 0/0:.:257:256:0:0%:141,115,0,0 -Example1_ref 11058 . C . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:145,111,0,0 0/0:.:256:256:0:0%:145,111,0,0 -Example1_ref 11059 . G . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:149,117,0,0 0/0:.:266:266:0:0%:149,117,0,0 -Example1_ref 11060 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:160,119,0,0 0/0:.:279:279:0:0%:160,119,0,0 -Example1_ref 11061 . T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:160,117,0,0 0/0:.:277:277:0:0%:160,117,0,0 -Example1_ref 11062 . T . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:159,123,0,0 0/0:.:282:282:0:0%:159,123,0,0 -Example1_ref 11063 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:162,124,0,0 0/0:.:286:286:0:0%:162,124,0,0 -Example1_ref 11064 . T C . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:282:1:0.35%:162,120,1,0 0/0:.:283:282:1:0.35%:162,120,1,0 -Example1_ref 11065 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:161,135,0,0 0/0:.:296:296:0:0%:161,135,0,0 -Example1_ref 11066 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:162,138,0,0 0/0:.:300:300:0:0%:162,138,0,0 -Example1_ref 11067 . GT G . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=6.3767E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:285:4:1.38%:156,129,0,4 0/0:.:289:285:4:1.38%:156,129,0,4 -Example1_ref 11068 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:289:0:0%:157,132,0,0 0/0:.:293:289:0:0%:157,132,0,0 -Example1_ref 11069 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:157,127,0,0 0/0:.:284:284:0:0%:157,127,0,0 -Example1_ref 11070 . GCA G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=6.5709E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:278:3:1.07%:155,123,0,3 0/0:.:281:278:3:1.07%:155,123,0,3 -Example1_ref 11071 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:154,121,0,0 0/0:.:275:275:0:0%:154,121,0,0 -Example1_ref 11072 . A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:155,128,0,0 0/0:.:283:283:0:0%:155,128,0,0 -Example1_ref 11073 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:154,128,0,0 0/0:.:282:282:0:0%:154,128,0,0 -Example1_ref 11074 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:155,127,0,0 0/0:.:282:282:0:0%:155,127,0,0 -Example1_ref 11075 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:155,128,0,0 0/0:.:284:283:0:0%:155,128,0,0 -Example1_ref 11076 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:0:0%:162,127,0,0 0/0:.:290:289:0:0%:162,127,0,0 -Example1_ref 11077 . G . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:0:0%:178,131,0,0 0/0:.:310:309:0:0%:178,131,0,0 -Example1_ref 11078 . T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:183,128,0,0 0/0:.:312:311:0:0%:183,128,0,0 -Example1_ref 11079 . T G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:310:1:0.32%:184,126,0,1 0/0:.:312:310:1:0.32%:184,126,0,1 -Example1_ref 11080 . C A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:183,124,0,1 0/0:.:308:307:1:0.32%:183,124,0,1 -Example1_ref 11081 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:187,129,0,0 0/0:.:316:316:0:0%:187,129,0,0 -Example1_ref 11082 . T G . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:187,128,0,1 0/0:.:316:315:1:0.32%:187,128,0,1 -Example1_ref 11083 . A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:187,130,0,0 0/0:.:317:317:0:0%:187,130,0,0 -Example1_ref 11084 . T G . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:183,126,0,1 0/0:.:310:309:1:0.32%:183,126,0,1 -Example1_ref 11085 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:0:0%:180,128,0,0 0/0:.:309:308:0:0%:180,128,0,0 -Example1_ref 11086 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:186,125,0,0 0/0:.:311:311:0:0%:186,125,0,0 -Example1_ref 11087 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:184,117,0,0 0/0:.:301:301:0:0%:184,117,0,0 -Example1_ref 11088 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:181,115,0,0 0/0:.:296:296:0:0%:181,115,0,0 -Example1_ref 11089 . C . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:183,113,0,0 0/0:.:296:296:0:0%:183,113,0,0 -Example1_ref 11090 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:186,116,0,0 0/0:.:302:302:0:0%:186,116,0,0 -Example1_ref 11091 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:187,116,0,0 0/0:.:303:303:0:0%:187,116,0,0 -Example1_ref 11092 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:186,116,0,0 0/0:.:302:302:0:0%:186,116,0,0 -Example1_ref 11093 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:191,116,0,0 0/0:.:307:307:0:0%:191,116,0,0 -Example1_ref 11094 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:200,121,0,0 0/0:.:321:321:0:0%:200,121,0,0 -Example1_ref 11095 . A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:200,122,0,0 0/0:.:322:322:0:0%:200,122,0,0 -Example1_ref 11096 . A G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:209,122,0,1 0/0:.:332:331:1:0.3%:209,122,0,1 -Example1_ref 11097 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:213,123,0,0 0/0:.:336:336:0:0%:213,123,0,0 -Example1_ref 11098 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:221,124,0,0 0/0:.:345:345:0:0%:221,124,0,0 -Example1_ref 11099 . T A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:223,126,1,0 0/0:.:350:349:1:0.29%:223,126,1,0 -Example1_ref 11100 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:225,129,0,0 0/0:.:354:354:0:0%:225,129,0,0 -Example1_ref 11101 . T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:224,128,0,0 0/0:.:352:352:0:0%:224,128,0,0 -Example1_ref 11102 . TA T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:220,124,0,1 0/0:.:345:344:1:0.29%:220,124,0,1 -Example1_ref 11103 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:221,121,0,0 0/0:.:343:342:0:0%:221,121,0,0 -Example1_ref 11104 . T . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:225,124,0,0 0/0:.:349:349:0:0%:225,124,0,0 -Example1_ref 11105 . G . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:217,125,0,0 0/0:.:342:342:0:0%:217,125,0,0 -Example1_ref 11106 . A G . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:219,139,0,1 0/0:.:359:358:1:0.28%:219,139,0,1 -Example1_ref 11107 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:220,135,0,0 0/0:.:355:355:0:0%:220,135,0,0 -Example1_ref 11108 . G . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:220,134,0,0 0/0:.:354:354:0:0%:220,134,0,0 -Example1_ref 11109 . G . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:217,134,0,0 0/0:.:351:351:0:0%:217,134,0,0 -Example1_ref 11110 . G T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=6.8803E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:350:2:0.57%:214,136,1,1 0/0:.:352:350:2:0.57%:214,136,1,1 -Example1_ref 11111 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:225,141,0,0 0/0:.:366:366:0:0%:225,141,0,0 -Example1_ref 11112 . G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:220,137,0,0 0/0:.:357:357:0:0%:220,137,0,0 -Example1_ref 11113 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:222,139,0,0 0/0:.:361:361:0:0%:222,139,0,0 -Example1_ref 11114 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:220,141,0,0 0/0:.:361:361:0:0%:220,141,0,0 -Example1_ref 11115 . T G . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:364:1:0.27%:227,137,0,1 0/0:.:365:364:1:0.27%:227,137,0,1 -Example1_ref 11116 . T G . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:225,136,0,1 0/0:.:362:361:1:0.28%:225,136,0,1 -Example1_ref 11117 . C . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:223,140,0,0 0/0:.:363:363:0:0%:223,140,0,0 -Example1_ref 11118 . T G . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:362:1:0.28%:226,136,0,1 0/0:.:363:362:1:0.28%:226,136,0,1 -Example1_ref 11119 . T G . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:229,130,0,1 0/0:.:360:359:1:0.28%:229,130,0,1 -Example1_ref 11120 . C A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:226,131,1,0 0/0:.:358:357:1:0.28%:226,131,1,0 -Example1_ref 11121 . C A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:222,136,0,1 0/0:.:359:358:1:0.28%:222,136,0,1 -Example1_ref 11122 . T G . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:366:1:0.27%:229,137,0,1 0/0:.:367:366:1:0.27%:229,137,0,1 -Example1_ref 11123 . C A . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:367:1:0.27%:229,138,0,1 0/0:.:368:367:1:0.27%:229,138,0,1 -Example1_ref 11124 . A . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:226,142,0,0 0/0:.:368:368:0:0%:226,142,0,0 -Example1_ref 11125 . A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:226,145,0,0 0/0:.:371:371:0:0%:226,145,0,0 -Example1_ref 11126 . G A . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:366:1:0.27%:228,138,0,1 0/0:.:367:366:1:0.27%:228,138,0,1 -Example1_ref 11127 . C A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:368:1:0.27%:231,137,0,1 0/0:.:369:368:1:0.27%:231,137,0,1 -Example1_ref 11128 . T G . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:1:0.27%:234,140,0,1 0/0:.:375:374:1:0.27%:234,140,0,1 -Example1_ref 11129 . C A . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:375:1:0.27%:235,140,0,1 0/0:.:376:375:1:0.27%:235,140,0,1 -Example1_ref 11130 . T G . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:236,149,0,1 0/0:.:386:385:1:0.26%:236,149,0,1 -Example1_ref 11131 . G C . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:380:1:0.26%:230,150,0,1 0/0:.:382:380:1:0.26%:230,150,0,1 -Example1_ref 11132 . A . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:233,149,0,0 0/0:.:382:382:0:0%:233,149,0,0 -Example1_ref 11133 . A . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:235,150,0,0 0/0:.:385:385:0:0%:235,150,0,0 -Example1_ref 11134 . A . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:232,147,0,0 0/0:.:379:379:0:0%:232,147,0,0 -Example1_ref 11135 . G . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:230,149,0,0 0/0:.:379:379:0:0%:230,149,0,0 -Example1_ref 11136 . C A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:381:1:0.26%:231,150,0,1 0/0:.:383:381:1:0.26%:231,150,0,1 -Example1_ref 11137 . A . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:384:0:0%:233,151,0,0 0/0:.:385:384:0:0%:233,151,0,0 -Example1_ref 11138 . T G . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:378:1:0.26%:232,146,0,1 0/0:.:380:378:1:0.26%:232,146,0,1 -Example1_ref 11139 . T C . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:384:1:0.26%:231,153,0,1 0/0:.:387:384:1:0.26%:231,153,0,1 -Example1_ref 11140 . A . PASS DP=818;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:408:0:0%:254,154,0,0 0/0:.:409:408:0:0%:254,154,0,0 -Example1_ref 11141 . T . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:255,159,0,0 0/0:.:414:414:0:0%:255,159,0,0 -Example1_ref 11142 . C . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:419:0:0%:256,163,0,0 0/0:.:419:419:0:0%:256,163,0,0 -Example1_ref 11143 . T . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:257,163,0,0 0/0:.:420:420:0:0%:257,163,0,0 -Example1_ref 11144 . A ATTACT . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:1:0.24%:251,163,1,0 0/0:.:415:414:1:0.24%:251,163,1,0 -Example1_ref 11145 . G . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:401:0:0%:240,161,0,0 0/0:.:401:401:0:0%:240,161,0,0 -Example1_ref 11146 . A . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:247,161,0,0 0/0:.:408:408:0:0%:247,161,0,0 -Example1_ref 11147 . T . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:253,164,0,0 0/0:.:417:417:0:0%:253,164,0,0 -Example1_ref 11148 . G . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:247,167,0,0 0/0:.:414:414:0:0%:247,167,0,0 -Example1_ref 11149 . T . PASS DP=824;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:252,160,0,0 0/0:.:412:412:0:0%:252,160,0,0 -Example1_ref 11150 . G T . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=6.8796E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:409:2:0.49%:248,161,1,1 0/0:.:411:409:2:0.49%:248,161,1,1 -Example1_ref 11151 . T . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:255,163,0,0 0/0:.:418:418:0:0%:255,163,0,0 -Example1_ref 11152 . C . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:253,163,0,0 0/0:.:416:416:0:0%:253,163,0,0 -Example1_ref 11153 . T . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:256,174,0,0 0/0:.:430:430:0:0%:256,174,0,0 -Example1_ref 11154 . T . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:257,171,0,0 0/0:.:428:428:0:0%:257,171,0,0 -Example1_ref 11155 . C . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:255,175,0,0 0/0:.:430:430:0:0%:255,175,0,0 -Example1_ref 11156 . T A . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:436:1:0.23%:257,179,0,1 0/0:.:438:436:1:0.23%:257,179,0,1 -Example1_ref 11157 . G . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:255,176,0,0 0/0:.:431:431:0:0%:255,176,0,0 -Example1_ref 11158 . G T . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=6.3736E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:424:4:0.93%:247,177,4,0 0/0:.:428:424:4:0.93%:247,177,4,0 -Example1_ref 11159 . T . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:258,172,0,0 0/0:.:430:430:0:0%:258,172,0,0 -Example1_ref 11160 . C T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:256,178,0,1 0/0:.:435:434:1:0.23%:256,178,0,1 -Example1_ref 11161 . A . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:257,182,0,0 0/0:.:439:439:0:0%:257,182,0,0 -Example1_ref 11162 . G . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:254,180,0,0 0/0:.:434:434:0:0%:254,180,0,0 -Example1_ref 11163 . A C . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:249,179,1,0 0/0:.:429:428:1:0.23%:249,179,1,0 -Example1_ref 11164 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:247,184,0,0 0/0:.:431:431:0:0%:247,184,0,0 -Example1_ref 11165 . A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:252,184,0,0 0/0:.:436:436:0:0%:252,184,0,0 -Example1_ref 11166 . C . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:252,183,0,0 0/0:.:435:435:0:0%:252,183,0,0 -Example1_ref 11167 . A C . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:251,183,1,0 0/0:.:435:434:1:0.23%:251,183,1,0 -Example1_ref 11168 . G . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:262,183,0,0 0/0:.:445:445:0:0%:262,183,0,0 -Example1_ref 11169 . T C . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:452:1:0.22%:266,186,1,0 0/0:.:453:452:1:0.22%:266,186,1,0 -Example1_ref 11170 . A . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:263,185,0,0 0/0:.:448:448:0:0%:263,185,0,0 -Example1_ref 11171 . A T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:446:1:0.22%:262,184,0,1 0/0:.:448:446:1:0.22%:262,184,0,1 -Example1_ref 11172 . T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:269,184,0,0 0/0:.:453:453:0:0%:269,184,0,0 -Example1_ref 11173 . A . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:271,183,0,0 0/0:.:454:454:0:0%:271,183,0,0 -Example1_ref 11174 . GA G . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:451:1:0.22%:265,186,0,1 0/0:.:452:451:1:0.22%:265,186,0,1 -Example1_ref 11175 . A . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:0:0%:268,182,0,0 0/0:.:451:450:0:0%:268,182,0,0 -Example1_ref 11176 . T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:270,183,0,0 0/0:.:453:453:0:0%:270,183,0,0 -Example1_ref 11177 . G . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:269,182,0,0 0/0:.:451:451:0:0%:269,182,0,0 -Example1_ref 11178 . A . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:267,185,0,0 0/0:.:452:452:0:0%:267,185,0,0 -Example1_ref 11179 . A . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:270,182,0,0 0/0:.:452:452:0:0%:270,182,0,0 -Example1_ref 11180 . A T . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:455:1:0.22%:270,185,1,0 0/0:.:456:455:1:0.22%:270,185,1,0 -Example1_ref 11181 . C . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:268,183,0,0 0/0:.:451:451:0:0%:268,183,0,0 -Example1_ref 11182 . A . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:271,185,0,0 0/0:.:456:456:0:0%:271,185,0,0 -Example1_ref 11183 . A T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:452:1:0.22%:267,185,1,0 0/0:.:453:452:1:0.22%:267,185,1,0 -Example1_ref 11184 . G . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:261,188,0,0 0/0:.:449:449:0:0%:261,188,0,0 -Example1_ref 11185 . A . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:264,187,0,0 0/0:.:451:451:0:0%:264,187,0,0 -Example1_ref 11186 . T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:262,186,0,0 0/0:.:448:448:0:0%:262,186,0,0 -Example1_ref 11187 . C . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:259,193,0,0 0/0:.:452:452:0:0%:259,193,0,0 -Example1_ref 11188 . A T . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:453:1:0.22%:267,186,1,0 0/0:.:454:453:1:0.22%:267,186,1,0 -Example1_ref 11189 . G . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:263,186,0,0 0/0:.:449:449:0:0%:263,186,0,0 -Example1_ref 11190 . C T . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:1:0.22%:264,186,1,0 0/0:.:451:450:1:0.22%:264,186,1,0 -Example1_ref 11191 . A C . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:460:1:0.22%:267,193,1,0 0/0:.:461:460:1:0.22%:267,193,1,0 -Example1_ref 11192 . T . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:266,194,0,0 0/0:.:460:460:0:0%:266,194,0,0 -Example1_ref 11193 . C A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:453:1:0.22%:262,191,1,0 0/0:.:455:453:1:0.22%:262,191,1,0 -Example1_ref 11194 . T . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:264,193,0,0 0/0:.:457:457:0:0%:264,193,0,0 -Example1_ref 11195 . T . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:264,195,0,0 0/0:.:459:459:0:0%:264,195,0,0 -Example1_ref 11196 . C . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:260,194,0,0 0/0:.:454:454:0:0%:260,194,0,0 -Example1_ref 11197 . A G . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:254,192,0,1 0/0:.:447:446:1:0.22%:254,192,0,1 -Example1_ref 11198 . A G . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:250,194,0,1 0/0:.:445:444:1:0.22%:250,194,0,1 -Example1_ref 11199 . A . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:251,195,0,0 0/0:.:446:446:0:0%:251,195,0,0 -Example1_ref 11200 . C G . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:246,196,0,1 0/0:.:443:442:1:0.23%:246,196,0,1 -Example1_ref 11201 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:250,200,0,0 0/0:.:450:450:0:0%:250,200,0,0 -Example1_ref 11202 . T C . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:248,196,0,1 0/0:.:445:444:1:0.22%:248,196,0,1 -Example1_ref 11203 . G . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:243,197,0,0 0/0:.:440:440:0:0%:243,197,0,0 -Example1_ref 11204 . G T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:238,196,1,0 0/0:.:435:434:1:0.23%:238,196,1,0 -Example1_ref 11205 . C . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:239,198,0,0 0/0:.:437:437:0:0%:239,198,0,0 -Example1_ref 11206 . A . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:243,205,0,0 0/0:.:448:448:0:0%:243,205,0,0 -Example1_ref 11207 . AC A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:239,202,1,0 0/0:.:442:441:1:0.23%:239,202,1,0 -Example1_ref 11208 . C . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:0:0%:235,204,0,0 0/0:.:440:439:0:0%:235,204,0,0 -Example1_ref 11209 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:239,203,0,0 0/0:.:442:442:0:0%:239,203,0,0 -Example1_ref 11210 . T . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:238,201,0,0 0/0:.:439:439:0:0%:238,201,0,0 -Example1_ref 11211 . C G . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:438:1:0.23%:232,206,1,0 0/0:.:439:438:1:0.23%:232,206,1,0 -Example1_ref 11212 . A . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:238,209,0,0 0/0:.:447:447:0:0%:238,209,0,0 -Example1_ref 11213 . T TG . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:237,209,1,0 0/0:.:447:446:1:0.22%:237,209,1,0 -Example1_ref 11214 . T . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:237,207,0,0 0/0:.:444:444:0:0%:237,207,0,0 -Example1_ref 11215 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:237,213,0,0 0/0:.:450:450:0:0%:237,213,0,0 -Example1_ref 11216 . G . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:226,210,0,0 0/0:.:436:436:0:0%:226,210,0,0 -Example1_ref 11217 . C . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:222,216,0,0 0/0:.:438:438:0:0%:222,216,0,0 -Example1_ref 11218 . A . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:220,214,0,0 0/0:.:434:434:0:0%:220,214,0,0 -Example1_ref 11219 . A G . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:427:1:0.23%:216,211,1,0 0/0:.:429:427:1:0.23%:216,211,1,0 -Example1_ref 11220 . A T . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:1:0.24%:214,210,1,0 0/0:.:425:424:1:0.24%:214,210,1,0 -Example1_ref 11221 . A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:216,213,0,0 0/0:.:429:429:0:0%:216,213,0,0 -Example1_ref 11222 . G A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:421:1:0.24%:212,209,0,1 0/0:.:423:421:1:0.24%:212,209,0,1 -Example1_ref 11223 . C A . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:209,209,1,0 0/0:.:419:418:1:0.24%:209,209,1,0 -Example1_ref 11224 . A G . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:420:1:0.24%:216,204,0,1 0/0:.:421:420:1:0.24%:216,204,0,1 -Example1_ref 11225 . A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:212,209,0,0 0/0:.:421:421:0:0%:212,209,0,0 -Example1_ref 11226 . T . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:0:0%:217,205,0,0 0/0:.:423:422:0:0%:217,205,0,0 -Example1_ref 11227 . T . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:0:0%:210,209,0,0 0/0:.:420:419:0:0%:210,209,0,0 -Example1_ref 11228 . G A . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:1:0.24%:203,211,1,0 0/0:.:415:414:1:0.24%:203,211,1,0 -Example1_ref 11229 . A T . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:1:0.24%:209,210,1,0 0/0:.:420:419:1:0.24%:209,210,1,0 -Example1_ref 11230 . G . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:206,212,0,0 0/0:.:418:418:0:0%:206,212,0,0 -Example1_ref 11231 . A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:209,212,0,0 0/0:.:421:421:0:0%:209,212,0,0 -Example1_ref 11232 . A C . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=6.8794E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:421:2:0.47%:210,211,1,1 0/0:.:423:421:2:0.47%:210,211,1,1 -Example1_ref 11233 . T A . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:429:1:0.23%:216,213,0,1 0/0:.:430:429:1:0.23%:216,213,0,1 -Example1_ref 11234 . G . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:214,210,0,0 0/0:.:424:424:0:0%:214,210,0,0 -Example1_ref 11235 . G C . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:417:1:0.24%:204,213,1,0 0/0:.:419:417:1:0.24%:204,213,1,0 -Example1_ref 11236 . T . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:215,214,0,0 0/0:.:429:429:0:0%:215,214,0,0 -Example1_ref 11237 . T . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:220,212,0,0 0/0:.:432:432:0:0%:220,212,0,0 -Example1_ref 11238 . A . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:218,214,0,0 0/0:.:432:432:0:0%:218,214,0,0 -Example1_ref 11239 . T . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:220,216,0,0 0/0:.:436:436:0:0%:220,216,0,0 -Example1_ref 11240 . T A . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:428:1:0.23%:215,213,1,0 0/0:.:430:428:1:0.23%:215,213,1,0 -Example1_ref 11241 . C . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:212,215,0,0 0/0:.:427:427:0:0%:212,215,0,0 -Example1_ref 11242 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:217,216,0,0 0/0:.:433:433:0:0%:217,216,0,0 -Example1_ref 11243 . C A . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:1:0.24%:216,208,0,1 0/0:.:425:424:1:0.24%:216,208,0,1 -Example1_ref 11244 . C A . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:421:1:0.24%:211,210,1,0 0/0:.:424:421:1:0.24%:211,210,1,0 -Example1_ref 11245 . T A . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:420:1:0.24%:212,208,1,0 0/0:.:422:420:1:0.24%:212,208,1,0 -Example1_ref 11246 . G . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:214,207,0,0 0/0:.:421:421:0:0%:214,207,0,0 -Example1_ref 11247 . T . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:221,209,0,0 0/0:.:430:430:0:0%:221,209,0,0 -Example1_ref 11248 . T . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:213,204,0,0 0/0:.:417:417:0:0%:213,204,0,0 -Example1_ref 11249 . C . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:205,205,0,0 0/0:.:410:410:0:0%:205,205,0,0 -Example1_ref 11250 . T C . PASS DP=808;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:403:1:0.25%:200,203,0,1 0/0:.:404:403:1:0.25%:200,203,0,1 -Example1_ref 11251 . A . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:201,209,0,0 0/0:.:410:410:0:0%:201,209,0,0 -Example1_ref 11252 . G . PASS DP=808;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:199,205,0,0 0/0:.:404:404:0:0%:199,205,0,0 -Example1_ref 11253 . G GACTGTCTCTT . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=6.5684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:397:3:0.75%:190,207,3,0 0/0:.:401:397:3:0.75%:190,207,3,0 -Example1_ref 11254 . A ACTG . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:396:1:0.25%:190,206,1,0 0/0:.:397:396:1:0.25%:190,206,1,0 -Example1_ref 11255 . T . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:388:0:0%:201,187,0,0 0/0:.:389:388:0:0%:201,187,0,0 -Example1_ref 11256 . A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:200,187,0,0 0/0:.:387:387:0:0%:200,187,0,0 -Example1_ref 11257 . C . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:380:0:0%:197,183,0,0 0/0:.:380:380:0:0%:197,183,0,0 -Example1_ref 11258 . G A . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=6.88E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:374:2:0.53%:193,181,1,1 0/0:.:376:374:2:0.53%:193,181,1,1 -Example1_ref 11259 . C . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:196,181,0,0 0/0:.:377:377:0:0%:196,181,0,0 -Example1_ref 11260 . A AC . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:372:1:0.27%:190,182,1,0 0/0:.:373:372:1:0.27%:190,182,1,0 -Example1_ref 11261 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:190,180,0,0 0/0:.:370:370:0:0%:190,180,0,0 -Example1_ref 11262 . G A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:367:1:0.27%:189,178,0,1 0/0:.:369:367:1:0.27%:189,178,0,1 -Example1_ref 11263 . C . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:364:0:0%:190,174,0,0 0/0:.:364:364:0:0%:190,174,0,0 -Example1_ref 11264 . T . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:184,183,0,0 0/0:.:367:367:0:0%:184,183,0,0 -Example1_ref 11265 . C . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:185,175,0,0 0/0:.:360:360:0:0%:185,175,0,0 -Example1_ref 11266 . A . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:364:0:0%:183,181,0,0 0/0:.:364:364:0:0%:183,181,0,0 -Example1_ref 11267 . A C . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:357:1:0.28%:175,182,1,0 0/0:.:359:357:1:0.28%:175,182,1,0 -Example1_ref 11268 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:176,179,0,0 0/0:.:355:355:0:0%:176,179,0,0 -Example1_ref 11269 . T C . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:174,180,1,0 0/0:.:355:354:1:0.28%:174,180,1,0 -Example1_ref 11270 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:167,179,0,0 0/0:.:346:346:0:0%:167,179,0,0 -Example1_ref 11271 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:167,179,0,0 0/0:.:346:346:0:0%:167,179,0,0 -Example1_ref 11272 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:165,180,0,0 0/0:.:345:345:0:0%:165,180,0,0 -Example1_ref 11273 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:168,181,0,0 0/0:.:349:349:0:0%:168,181,0,0 -Example1_ref 11274 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:167,186,0,0 0/0:.:353:353:0:0%:167,186,0,0 -Example1_ref 11275 . G GCTGTCTCT . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:159,185,1,0 0/0:.:345:344:1:0.29%:159,185,1,0 -Example1_ref 11276 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:161,184,0,0 0/0:.:345:345:0:0%:161,184,0,0 -Example1_ref 11277 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:163,183,0,0 0/0:.:346:346:0:0%:163,183,0,0 -Example1_ref 11278 . T . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:169,182,0,0 0/0:.:351:351:0:0%:169,182,0,0 -Example1_ref 11279 . A . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:167,184,0,0 0/0:.:351:351:0:0%:167,184,0,0 -Example1_ref 11280 . T . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:172,181,0,0 0/0:.:353:353:0:0%:172,181,0,0 -Example1_ref 11281 . T TCTA . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:168,180,0,1 0/0:.:349:348:1:0.29%:168,180,0,1 -Example1_ref 11282 . C . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:163,180,0,0 0/0:.:343:343:0:0%:163,180,0,0 -Example1_ref 11283 . A AG . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=6.8805E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:340:2:0.58%:155,185,0,2 0/0:.:343:340:2:0.58%:155,185,0,2 -Example1_ref 11284 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:154,187,0,0 0/0:.:341:341:0:0%:154,187,0,0 -Example1_ref 11285 . CAA C . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:335:1:0.3%:149,186,1,0 0/0:.:337:335:1:0.3%:149,186,1,0 -Example1_ref 11286 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:0:0%:143,182,0,0 0/0:.:326:325:0:0%:143,182,0,0 -Example1_ref 11287 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:160,188,0,0 0/0:.:348:348:0:0%:160,188,0,0 -Example1_ref 11288 . CTA C . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:333:1:0.3%:147,186,0,1 0/0:.:335:333:1:0.3%:147,186,0,1 -Example1_ref 11289 . T . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:149,181,0,0 0/0:.:330:330:0:0%:149,181,0,0 -Example1_ref 11290 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:150,182,0,0 0/0:.:332:332:0:0%:150,182,0,0 -Example1_ref 11291 . T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:153,181,0,0 0/0:.:334:334:0:0%:153,181,0,0 -Example1_ref 11292 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:160,186,0,0 0/0:.:346:346:0:0%:160,186,0,0 -Example1_ref 11293 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:160,180,0,0 0/0:.:340:340:0:0%:160,180,0,0 -Example1_ref 11294 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:156,177,0,0 0/0:.:333:333:0:0%:156,177,0,0 -Example1_ref 11295 . T TC . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:159,171,1,0 0/0:.:331:330:1:0.3%:159,171,1,0 -Example1_ref 11296 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:0:0%:158,165,0,0 0/0:.:324:323:0:0%:158,165,0,0 -Example1_ref 11297 . G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:151,166,0,0 0/0:.:317:317:0:0%:151,166,0,0 -Example1_ref 11298 . C . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:155,161,0,0 0/0:.:316:316:0:0%:155,161,0,0 -Example1_ref 11299 . C A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=6.8811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:305:2:0.65%:152,153,0,2 0/0:.:308:305:2:0.65%:152,153,0,2 -Example1_ref 11300 . C . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:155,163,0,0 0/0:.:318:318:0:0%:155,163,0,0 -Example1_ref 11301 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:157,158,0,0 0/0:.:315:315:0:0%:157,158,0,0 -Example1_ref 11302 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:154,160,0,0 0/0:.:314:314:0:0%:154,160,0,0 -Example1_ref 11303 . G . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:151,156,0,0 0/0:.:307:307:0:0%:151,156,0,0 -Example1_ref 11304 . G . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:150,153,0,0 0/0:.:303:303:0:0%:150,153,0,0 -Example1_ref 11305 . G T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:147,160,1,0 0/0:.:308:307:1:0.32%:147,160,1,0 -Example1_ref 11306 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:149,160,0,0 0/0:.:309:309:0:0%:149,160,0,0 -Example1_ref 11307 . T . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:159,159,0,0 0/0:.:318:318:0:0%:159,159,0,0 -Example1_ref 11308 . G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:155,162,0,0 0/0:.:317:317:0:0%:155,162,0,0 -Example1_ref 11309 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:152,162,0,0 0/0:.:314:314:0:0%:152,162,0,0 -Example1_ref 11310 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:156,164,0,0 0/0:.:320:320:0:0%:156,164,0,0 -Example1_ref 11311 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:159,161,0,0 0/0:.:320:320:0:0%:159,161,0,0 -Example1_ref 11312 . A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:154,163,0,0 0/0:.:317:317:0:0%:154,163,0,0 -Example1_ref 11313 . T . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:159,159,0,0 0/0:.:318:318:0:0%:159,159,0,0 -Example1_ref 11314 . C . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:156,156,0,0 0/0:.:312:312:0:0%:156,156,0,0 -Example1_ref 11315 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:156,156,0,0 0/0:.:312:312:0:0%:156,156,0,0 -Example1_ref 11316 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:149,162,0,0 0/0:.:311:311:0:0%:149,162,0,0 -Example1_ref 11317 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:155,155,0,0 0/0:.:310:310:0:0%:155,155,0,0 -Example1_ref 11318 . C . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:150,158,0,0 0/0:.:308:308:0:0%:150,158,0,0 -Example1_ref 11319 . C CCTGTCTCTT . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:146,156,1,0 0/0:.:303:302:1:0.33%:146,156,1,0 -Example1_ref 11320 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:150,155,0,0 0/0:.:305:305:0:0%:150,155,0,0 -Example1_ref 11321 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:152,158,0,0 0/0:.:310:310:0:0%:152,158,0,0 -Example1_ref 11322 . C . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:164,159,0,0 0/0:.:323:323:0:0%:164,159,0,0 -Example1_ref 11323 . T G . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:318:1:0.31%:162,156,0,1 0/0:.:320:318:1:0.31%:162,156,0,1 -Example1_ref 11324 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:162,158,0,0 0/0:.:320:320:0:0%:162,158,0,0 -Example1_ref 11325 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:163,160,0,0 0/0:.:323:323:0:0%:163,160,0,0 -Example1_ref 11326 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:162,161,0,0 0/0:.:323:323:0:0%:162,161,0,0 -Example1_ref 11327 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:167,162,0,0 0/0:.:329:329:0:0%:167,162,0,0 -Example1_ref 11328 . C CCTGTCTCTTAT . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:326:1:0.31%:165,161,1,0 0/0:.:328:326:1:0.31%:165,161,1,0 -Example1_ref 11329 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:159,155,0,0 0/0:.:314:314:0:0%:159,155,0,0 -Example1_ref 11330 . C A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:144,148,0,1 0/0:.:293:292:1:0.34%:144,148,0,1 -Example1_ref 11331 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:142,142,0,0 0/0:.:284:284:0:0%:142,142,0,0 -Example1_ref 11332 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:143,143,0,0 0/0:.:286:286:0:0%:143,143,0,0 -Example1_ref 11333 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:145,143,0,0 0/0:.:288:288:0:0%:145,143,0,0 -Example1_ref 11334 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:145,145,0,0 0/0:.:290:290:0:0%:145,145,0,0 -Example1_ref 11335 . T G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:149,137,0,1 0/0:.:287:286:1:0.35%:149,137,0,1 -Example1_ref 11336 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:144,143,0,0 0/0:.:287:287:0:0%:144,143,0,0 -Example1_ref 11337 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:149,141,0,0 0/0:.:290:290:0:0%:149,141,0,0 -Example1_ref 11338 . C T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=6.5706E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:287:3:1.03%:147,140,2,1 0/0:.:291:287:3:1.03%:147,140,2,1 -Example1_ref 11339 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:142,146,0,0 0/0:.:288:288:0:0%:142,146,0,0 -Example1_ref 11340 . A G . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:290:2:0.68%:142,148,2,0 0/0:.:292:290:2:0.68%:142,148,2,0 -Example1_ref 11341 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:141,141,0,0 0/0:.:282:282:0:0%:141,141,0,0 -Example1_ref 11342 . G GAAGCATACTGC . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:142,143,1,0 0/0:.:286:285:1:0.35%:142,143,1,0 -Example1_ref 11343 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:140,138,0,0 0/0:.:278:278:0:0%:140,138,0,0 -Example1_ref 11344 . T C . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:286:1:0.35%:145,141,1,0 0/0:.:288:286:1:0.35%:145,141,1,0 -Example1_ref 11345 . C . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:146,137,0,0 0/0:.:283:283:0:0%:146,137,0,0 -Example1_ref 11346 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:147,144,0,0 0/0:.:291:291:0:0%:147,144,0,0 -Example1_ref 11347 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:146,146,0,0 0/0:.:292:292:0:0%:146,146,0,0 -Example1_ref 11348 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:151,142,0,0 0/0:.:293:293:0:0%:151,142,0,0 -Example1_ref 11349 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:146,141,0,0 0/0:.:287:287:0:0%:146,141,0,0 -Example1_ref 11350 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:151,140,0,0 0/0:.:291:291:0:0%:151,140,0,0 -Example1_ref 11351 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:148,142,0,0 0/0:.:290:290:0:0%:148,142,0,0 -Example1_ref 11352 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:153,138,0,0 0/0:.:291:291:0:0%:153,138,0,0 -Example1_ref 11353 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:151,145,0,0 0/0:.:296:296:0:0%:151,145,0,0 -Example1_ref 11354 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:150,141,0,0 0/0:.:291:291:0:0%:150,141,0,0 -Example1_ref 11355 . G . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:147,141,0,0 0/0:.:288:288:0:0%:147,141,0,0 -Example1_ref 11356 . G T . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:1:0.35%:141,140,1,0 0/0:.:282:281:1:0.35%:141,140,1,0 -Example1_ref 11357 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:142,142,0,0 0/0:.:284:284:0:0%:142,142,0,0 -Example1_ref 11358 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:135,142,0,0 0/0:.:277:277:0:0%:135,142,0,0 -Example1_ref 11359 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:142,136,0,0 0/0:.:278:278:0:0%:142,136,0,0 -Example1_ref 11360 . C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:140,135,0,0 0/0:.:275:275:0:0%:140,135,0,0 -Example1_ref 11361 . C . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:139,138,0,0 0/0:.:277:277:0:0%:139,138,0,0 -Example1_ref 11362 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:138,140,0,0 0/0:.:278:278:0:0%:138,140,0,0 -Example1_ref 11363 . A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:133,143,0,0 0/0:.:276:276:0:0%:133,143,0,0 -Example1_ref 11364 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:135,144,0,0 0/0:.:279:279:0:0%:135,144,0,0 -Example1_ref 11365 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:136,142,0,0 0/0:.:278:278:0:0%:136,142,0,0 -Example1_ref 11366 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:136,142,0,0 0/0:.:278:278:0:0%:136,142,0,0 -Example1_ref 11367 . G T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:134,142,0,1 0/0:.:277:276:1:0.36%:134,142,0,1 -Example1_ref 11368 . G T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=6.8817E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:278:2:0.71%:134,144,2,0 0/0:.:280:278:2:0.71%:134,144,2,0 -Example1_ref 11369 . A C . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:1:0.36%:133,146,1,0 0/0:.:280:279:1:0.36%:133,146,1,0 -Example1_ref 11370 . T TAAGAGACA . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:139,144,0,1 0/0:.:284:283:1:0.35%:139,144,0,1 -Example1_ref 11371 . G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:139,142,0,0 0/0:.:281:281:0:0%:139,142,0,0 -Example1_ref 11372 . C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:143,141,0,0 0/0:.:284:284:0:0%:143,141,0,0 -Example1_ref 11373 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:143,142,0,0 0/0:.:285:285:0:0%:143,142,0,0 -Example1_ref 11374 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:145,141,0,0 0/0:.:286:286:0:0%:145,141,0,0 -Example1_ref 11375 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:146,144,0,0 0/0:.:290:290:0:0%:146,144,0,0 -Example1_ref 11376 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:145,143,0,0 0/0:.:288:288:0:0%:145,143,0,0 -Example1_ref 11377 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:147,141,0,0 0/0:.:288:288:0:0%:147,141,0,0 -Example1_ref 11378 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:143,140,0,0 0/0:.:283:283:0:0%:143,140,0,0 -Example1_ref 11379 . C . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:145,140,0,0 0/0:.:285:285:0:0%:145,140,0,0 -Example1_ref 11380 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:148,142,0,0 0/0:.:290:290:0:0%:148,142,0,0 -Example1_ref 11381 . T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:152,137,0,0 0/0:.:289:289:0:0%:152,137,0,0 -Example1_ref 11382 . C . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:155,136,0,0 0/0:.:291:291:0:0%:155,136,0,0 -Example1_ref 11383 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:156,137,0,0 0/0:.:293:293:0:0%:156,137,0,0 -Example1_ref 11384 . T G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:159,136,0,1 0/0:.:296:295:1:0.34%:159,136,0,1 -Example1_ref 11385 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:158,141,0,0 0/0:.:299:299:0:0%:158,141,0,0 -Example1_ref 11386 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:159,140,0,0 0/0:.:299:299:0:0%:159,140,0,0 -Example1_ref 11387 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:154,141,0,0 0/0:.:295:295:0:0%:154,141,0,0 -Example1_ref 11388 . T G . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:159,139,0,1 0/0:.:299:298:1:0.33%:159,139,0,1 -Example1_ref 11389 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:158,137,0,0 0/0:.:295:295:0:0%:158,137,0,0 -Example1_ref 11390 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:157,137,0,0 0/0:.:294:294:0:0%:157,137,0,0 -Example1_ref 11391 . C T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:156,127,1,0 0/0:.:284:283:1:0.35%:156,127,1,0 -Example1_ref 11392 . T . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:162,130,0,0 0/0:.:292:292:0:0%:162,130,0,0 -Example1_ref 11393 . G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:159,128,0,0 0/0:.:287:287:0:0%:159,128,0,0 -Example1_ref 11394 . C . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:159,128,0,0 0/0:.:287:287:0:0%:159,128,0,0 -Example1_ref 11395 . TA T . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:158,127,0,1 0/0:.:286:285:1:0.35%:158,127,0,1 -Example1_ref 11396 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:155,128,0,0 0/0:.:284:283:0:0%:155,128,0,0 -Example1_ref 11397 . G . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:168,130,0,0 0/0:.:298:298:0:0%:168,130,0,0 -Example1_ref 11398 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:166,132,0,0 0/0:.:298:298:0:0%:166,132,0,0 -Example1_ref 11399 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:166,127,0,0 0/0:.:293:293:0:0%:166,127,0,0 -Example1_ref 11400 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:169,135,0,0 0/0:.:304:304:0:0%:169,135,0,0 -Example1_ref 11401 . TG T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:164,132,1,0 0/0:.:297:296:1:0.34%:164,132,1,0 -Example1_ref 11402 . G T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:160,127,0,1 0/0:.:288:287:1:0.35%:160,127,0,1 -Example1_ref 11403 . G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:163,132,0,0 0/0:.:295:295:0:0%:163,132,0,0 -Example1_ref 11404 . G T . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:290:2:0.68%:161,129,2,0 0/0:.:292:290:2:0.68%:161,129,2,0 -Example1_ref 11405 . G A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:2:0.68%:166,127,0,2 0/0:.:295:293:2:0.68%:166,127,0,2 -Example1_ref 11406 . G T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:162,132,1,1 0/0:.:296:294:2:0.68%:162,132,1,1 -Example1_ref 11407 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:165,132,0,0 0/0:.:297:297:0:0%:165,132,0,0 -Example1_ref 11408 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:169,135,0,0 0/0:.:304:304:0:0%:169,135,0,0 -Example1_ref 11409 . T A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:169,134,0,1 0/0:.:304:303:1:0.33%:169,134,0,1 -Example1_ref 11410 . C A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:176,132,0,1 0/0:.:309:308:1:0.32%:176,132,0,1 -Example1_ref 11411 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:175,136,0,0 0/0:.:311:311:0:0%:175,136,0,0 -Example1_ref 11412 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:176,139,0,0 0/0:.:315:315:0:0%:176,139,0,0 -Example1_ref 11413 . C T . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:317:1:0.31%:181,136,1,0 0/0:.:318:317:1:0.31%:181,136,1,0 -Example1_ref 11414 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:184,139,0,0 0/0:.:323:323:0:0%:184,139,0,0 -Example1_ref 11415 . A . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:182,139,0,0 0/0:.:321:321:0:0%:182,139,0,0 -Example1_ref 11416 . C . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:186,134,0,0 0/0:.:320:320:0:0%:186,134,0,0 -Example1_ref 11417 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:182,136,0,0 0/0:.:318:318:0:0%:182,136,0,0 -Example1_ref 11418 . T . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:183,136,0,0 0/0:.:319:319:0:0%:183,136,0,0 -Example1_ref 11419 . G T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:180,128,0,1 0/0:.:309:308:1:0.32%:180,128,0,1 -Example1_ref 11420 . G . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:177,134,0,0 0/0:.:311:311:0:0%:177,134,0,0 -Example1_ref 11421 . C . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:182,129,0,0 0/0:.:311:311:0:0%:182,129,0,0 -Example1_ref 11422 . CA C . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:185,125,1,0 0/0:.:311:310:1:0.32%:185,125,1,0 -Example1_ref 11423 . A T . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:316:1:0.32%:184,132,0,1 0/0:.:318:316:1:0.32%:184,132,0,1 -Example1_ref 11424 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:183,132,0,0 0/0:.:315:315:0:0%:183,132,0,0 -Example1_ref 11425 . G . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:183,133,0,0 0/0:.:316:316:0:0%:183,133,0,0 -Example1_ref 11426 . T TCTCTTATA . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:183,130,1,0 0/0:.:314:313:1:0.32%:183,130,1,0 -Example1_ref 11427 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:178,127,0,0 0/0:.:305:305:0:0%:178,127,0,0 -Example1_ref 11428 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:181,129,0,0 0/0:.:310:310:0:0%:181,129,0,0 -Example1_ref 11429 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:181,128,0,0 0/0:.:309:309:0:0%:181,128,0,0 -Example1_ref 11430 . G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:182,130,0,0 0/0:.:312:312:0:0%:182,130,0,0 -Example1_ref 11431 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:178,137,0,0 0/0:.:315:315:0:0%:178,137,0,0 -Example1_ref 11432 . T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:182,139,0,0 0/0:.:321:321:0:0%:182,139,0,0 -Example1_ref 11433 . GT G . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:321:1:0.31%:183,138,0,1 0/0:.:323:321:1:0.31%:183,138,0,1 -Example1_ref 11434 . T . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:185,134,0,0 0/0:.:319:319:0:0%:185,134,0,0 -Example1_ref 11435 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:185,125,0,0 0/0:.:310:310:0:0%:185,125,0,0 -Example1_ref 11436 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:177,137,0,0 0/0:.:314:314:0:0%:177,137,0,0 -Example1_ref 11437 . T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:177,140,0,0 0/0:.:317:317:0:0%:177,140,0,0 -Example1_ref 11438 . G . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:180,143,0,0 0/0:.:323:323:0:0%:180,143,0,0 -Example1_ref 11439 . T . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:183,143,0,0 0/0:.:326:326:0:0%:183,143,0,0 -Example1_ref 11440 . A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:180,142,0,0 0/0:.:322:322:0:0%:180,142,0,0 -Example1_ref 11441 . A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:179,143,0,0 0/0:.:322:322:0:0%:179,143,0,0 -Example1_ref 11442 . G T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:1:0.32%:176,138,0,1 0/0:.:315:314:1:0.32%:176,138,0,1 -Example1_ref 11443 . G . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:177,138,0,0 0/0:.:315:315:0:0%:177,138,0,0 -Example1_ref 11444 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:178,142,0,0 0/0:.:320:320:0:0%:178,142,0,0 -Example1_ref 11445 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:188,139,0,0 0/0:.:327:327:0:0%:188,139,0,0 -Example1_ref 11446 . C . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:189,141,0,0 0/0:.:330:330:0:0%:189,141,0,0 -Example1_ref 11447 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:187,144,0,0 0/0:.:331:331:0:0%:187,144,0,0 -Example1_ref 11448 . T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:190,141,0,0 0/0:.:331:331:0:0%:190,141,0,0 -Example1_ref 11449 . T G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:189,142,0,1 0/0:.:332:331:1:0.3%:189,142,0,1 -Example1_ref 11450 . G . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:183,143,0,0 0/0:.:326:326:0:0%:183,143,0,0 -Example1_ref 11451 . GT G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:186,145,0,1 0/0:.:332:331:1:0.3%:186,145,0,1 -Example1_ref 11452 . T . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:0:0%:188,141,0,0 0/0:.:330:329:0:0%:188,141,0,0 -Example1_ref 11453 . G . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:183,141,0,0 0/0:.:324:324:0:0%:183,141,0,0 -Example1_ref 11454 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:184,141,0,0 0/0:.:325:325:0:0%:184,141,0,0 -Example1_ref 11455 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:187,135,0,0 0/0:.:322:322:0:0%:187,135,0,0 -Example1_ref 11456 . C A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:2:0.62%:189,134,0,2 0/0:.:325:323:2:0.62%:189,134,0,2 -Example1_ref 11457 . C . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:180,142,0,0 0/0:.:322:322:0:0%:180,142,0,0 -Example1_ref 11458 . A . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:178,143,0,0 0/0:.:321:321:0:0%:178,143,0,0 -Example1_ref 11459 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:180,140,0,0 0/0:.:320:320:0:0%:180,140,0,0 -Example1_ref 11460 . C . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:182,137,0,0 0/0:.:319:319:0:0%:182,137,0,0 -Example1_ref 11461 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:185,142,0,0 0/0:.:327:327:0:0%:185,142,0,0 -Example1_ref 11462 . G A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:182,141,0,1 0/0:.:324:323:1:0.31%:182,141,0,1 -Example1_ref 11463 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:185,144,0,0 0/0:.:329:329:0:0%:185,144,0,0 -Example1_ref 11464 . T C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:181,139,0,1 0/0:.:321:320:1:0.31%:181,139,0,1 -Example1_ref 11465 . G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:182,143,0,0 0/0:.:325:325:0:0%:182,143,0,0 -Example1_ref 11466 . C A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=6.881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:312:2:0.64%:175,137,2,0 0/0:.:314:312:2:0.64%:175,137,2,0 -Example1_ref 11467 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:179,145,0,0 0/0:.:324:324:0:0%:179,145,0,0 -Example1_ref 11468 . G . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:180,143,0,0 0/0:.:323:323:0:0%:180,143,0,0 -Example1_ref 11469 . C A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:181,142,0,1 0/0:.:324:323:1:0.31%:181,142,0,1 -Example1_ref 11470 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:178,146,0,0 0/0:.:324:324:0:0%:178,146,0,0 -Example1_ref 11471 . T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:181,140,0,0 0/0:.:321:321:0:0%:181,140,0,0 -Example1_ref 11472 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:177,143,0,0 0/0:.:320:320:0:0%:177,143,0,0 -Example1_ref 11473 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:179,148,0,0 0/0:.:327:327:0:0%:179,148,0,0 -Example1_ref 11474 . G . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:181,143,0,0 0/0:.:324:324:0:0%:181,143,0,0 -Example1_ref 11475 . C . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:177,145,0,0 0/0:.:322:322:0:0%:177,145,0,0 -Example1_ref 11476 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:177,148,0,0 0/0:.:325:325:0:0%:177,148,0,0 -Example1_ref 11477 . G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:164,142,0,0 0/0:.:306:306:0:0%:164,142,0,0 -Example1_ref 11478 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:168,144,0,0 0/0:.:312:312:0:0%:168,144,0,0 -Example1_ref 11479 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:168,146,0,0 0/0:.:314:314:0:0%:168,146,0,0 -Example1_ref 11480 . A C . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:164,146,1,0 0/0:.:311:310:1:0.32%:164,146,1,0 -Example1_ref 11481 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:164,145,0,0 0/0:.:309:309:0:0%:164,145,0,0 -Example1_ref 11482 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:159,144,0,0 0/0:.:303:303:0:0%:159,144,0,0 -Example1_ref 11483 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:160,147,0,0 0/0:.:307:307:0:0%:160,147,0,0 -Example1_ref 11484 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:157,147,0,0 0/0:.:304:304:0:0%:157,147,0,0 -Example1_ref 11485 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:157,144,0,0 0/0:.:301:301:0:0%:157,144,0,0 -Example1_ref 11486 . A C . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:158,147,1,0 0/0:.:306:305:1:0.33%:158,147,1,0 -Example1_ref 11487 . G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:161,144,0,0 0/0:.:305:305:0:0%:161,144,0,0 -Example1_ref 11488 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:299:0:0%:158,141,0,0 0/0:.:300:299:0:0%:158,141,0,0 -Example1_ref 11489 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:161,142,0,0 0/0:.:304:303:0:0%:161,142,0,0 -Example1_ref 11490 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:159,144,0,0 0/0:.:304:303:0:0%:159,144,0,0 -Example1_ref 11491 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:0:0%:160,145,0,0 0/0:.:306:305:0:0%:160,145,0,0 -Example1_ref 11492 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:158,149,0,0 0/0:.:307:307:0:0%:158,149,0,0 -Example1_ref 11493 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:160,147,0,0 0/0:.:307:307:0:0%:160,147,0,0 -Example1_ref 11494 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:154,151,0,0 0/0:.:305:305:0:0%:154,151,0,0 -Example1_ref 11495 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:154,148,0,0 0/0:.:302:302:0:0%:154,148,0,0 -Example1_ref 11496 . A AGCATCCAATTT . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:147,148,1,0 0/0:.:296:295:1:0.34%:147,148,1,0 -Example1_ref 11497 . G . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:152,146,0,0 0/0:.:298:298:0:0%:152,146,0,0 -Example1_ref 11498 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:142,141,0,0 0/0:.:283:283:0:0%:142,141,0,0 -Example1_ref 11499 . C T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:148,147,0,1 0/0:.:296:295:1:0.34%:148,147,0,1 -Example1_ref 11500 . G . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:139,145,0,0 0/0:.:284:284:0:0%:139,145,0,0 -Example1_ref 11501 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:144,150,0,0 0/0:.:294:294:0:0%:144,150,0,0 -Example1_ref 11502 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:141,149,0,0 0/0:.:290:290:0:0%:141,149,0,0 -Example1_ref 11503 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:141,149,0,0 0/0:.:290:290:0:0%:141,149,0,0 -Example1_ref 11504 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:147,148,0,0 0/0:.:295:295:0:0%:147,148,0,0 -Example1_ref 11505 . T TGG . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:143,147,1,0 0/0:.:291:290:1:0.34%:143,147,1,0 -Example1_ref 11506 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:145,151,0,0 0/0:.:296:296:0:0%:145,151,0,0 -Example1_ref 11507 . T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:148,146,0,0 0/0:.:294:294:0:0%:148,146,0,0 -Example1_ref 11508 . T G . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:148,150,1,0 0/0:.:300:298:1:0.33%:148,150,1,0 -Example1_ref 11509 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:148,145,0,0 0/0:.:293:293:0:0%:148,145,0,0 -Example1_ref 11510 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:149,145,0,0 0/0:.:294:294:0:0%:149,145,0,0 -Example1_ref 11511 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:153,151,0,0 0/0:.:304:304:0:0%:153,151,0,0 -Example1_ref 11512 . C . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:144,145,0,0 0/0:.:289:289:0:0%:144,145,0,0 -Example1_ref 11513 . C . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:144,151,0,0 0/0:.:295:295:0:0%:144,151,0,0 -Example1_ref 11514 . G T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:143,149,1,0 0/0:.:293:292:1:0.34%:143,149,1,0 -Example1_ref 11515 . A C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:144,152,1,0 0/0:.:297:296:1:0.34%:144,152,1,0 -Example1_ref 11516 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:140,150,0,0 0/0:.:290:290:0:0%:140,150,0,0 -Example1_ref 11517 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:143,150,0,0 0/0:.:293:293:0:0%:143,150,0,0 -Example1_ref 11518 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:147,152,0,0 0/0:.:299:299:0:0%:147,152,0,0 -Example1_ref 11519 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:148,148,0,0 0/0:.:296:296:0:0%:148,148,0,0 -Example1_ref 11520 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:151,149,0,0 0/0:.:300:300:0:0%:151,149,0,0 -Example1_ref 11521 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:151,148,0,0 0/0:.:299:299:0:0%:151,148,0,0 -Example1_ref 11522 . C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:146,147,0,0 0/0:.:293:293:0:0%:146,147,0,0 -Example1_ref 11523 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:149,152,0,0 0/0:.:301:301:0:0%:149,152,0,0 -Example1_ref 11524 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:164,156,0,0 0/0:.:320:320:0:0%:164,156,0,0 -Example1_ref 11525 . T G . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:322:2:0.62%:165,157,1,1 0/0:.:324:322:2:0.62%:165,157,1,1 -Example1_ref 11526 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:163,155,0,0 0/0:.:318:318:0:0%:163,155,0,0 -Example1_ref 11527 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:161,153,0,0 0/0:.:314:314:0:0%:161,153,0,0 -Example1_ref 11528 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:161,151,0,0 0/0:.:312:312:0:0%:161,151,0,0 -Example1_ref 11529 . G . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:160,149,0,0 0/0:.:309:309:0:0%:160,149,0,0 -Example1_ref 11530 . G T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:159,149,1,0 0/0:.:309:308:1:0.32%:159,149,1,0 -Example1_ref 11531 . A T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:158,149,1,0 0/0:.:308:307:1:0.32%:158,149,1,0 -Example1_ref 11532 . T TCTG . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:158,147,1,0 0/0:.:306:305:1:0.33%:158,147,1,0 -Example1_ref 11533 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:160,140,0,0 0/0:.:300:300:0:0%:160,140,0,0 -Example1_ref 11534 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:161,142,0,0 0/0:.:303:303:0:0%:161,142,0,0 -Example1_ref 11535 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:159,143,0,0 0/0:.:302:302:0:0%:159,143,0,0 -Example1_ref 11536 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:152,141,0,0 0/0:.:293:293:0:0%:152,141,0,0 -Example1_ref 11537 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:157,140,0,0 0/0:.:297:297:0:0%:157,140,0,0 -Example1_ref 11538 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:155,141,0,0 0/0:.:296:296:0:0%:155,141,0,0 -Example1_ref 11539 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:157,139,0,0 0/0:.:296:296:0:0%:157,139,0,0 -Example1_ref 11540 . C A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:299:1:0.33%:159,140,0,1 0/0:.:300:299:1:0.33%:159,140,0,1 -Example1_ref 11541 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:159,145,0,0 0/0:.:304:304:0:0%:159,145,0,0 -Example1_ref 11542 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:158,146,0,0 0/0:.:304:304:0:0%:158,146,0,0 -Example1_ref 11543 . G GAC . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:300:1:0.33%:156,144,0,1 0/0:.:302:300:1:0.33%:156,144,0,1 -Example1_ref 11544 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:159,144,0,0 0/0:.:303:303:0:0%:159,144,0,0 -Example1_ref 11545 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:163,145,0,0 0/0:.:308:308:0:0%:163,145,0,0 -Example1_ref 11546 . C A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:161,146,0,1 0/0:.:308:307:1:0.32%:161,146,0,1 -Example1_ref 11547 . C . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:155,147,0,0 0/0:.:302:302:0:0%:155,147,0,0 -Example1_ref 11548 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:160,149,0,0 0/0:.:309:309:0:0%:160,149,0,0 -Example1_ref 11549 . G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:156,146,0,0 0/0:.:302:302:0:0%:156,146,0,0 -Example1_ref 11550 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:150,147,0,0 0/0:.:297:297:0:0%:150,147,0,0 -Example1_ref 11551 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:158,148,0,0 0/0:.:306:306:0:0%:158,148,0,0 -Example1_ref 11552 . G C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:149,147,1,0 0/0:.:297:296:1:0.34%:149,147,1,0 -Example1_ref 11553 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:155,143,0,0 0/0:.:298:298:0:0%:155,143,0,0 -Example1_ref 11554 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:153,143,0,0 0/0:.:296:296:0:0%:153,143,0,0 -Example1_ref 11555 . T A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:162,142,0,1 0/0:.:305:304:1:0.33%:162,142,0,1 -Example1_ref 11556 . CA C . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:156,142,1,0 0/0:.:300:298:1:0.33%:156,142,1,0 -Example1_ref 11557 . ATC A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:159,139,0,1 0/0:.:300:298:1:0.33%:159,139,0,1 -Example1_ref 11558 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:160,138,0,0 0/0:.:298:298:0:0%:160,138,0,0 -Example1_ref 11559 . C CT . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:159,137,0,1 0/0:.:297:296:1:0.34%:159,137,0,1 -Example1_ref 11560 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:157,141,0,0 0/0:.:298:298:0:0%:157,141,0,0 -Example1_ref 11561 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:162,140,0,0 0/0:.:302:302:0:0%:162,140,0,0 -Example1_ref 11562 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:0:0%:156,139,0,0 0/0:.:297:295:0:0%:156,139,0,0 -Example1_ref 11563 . T C . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:155,142,1,0 0/0:.:298:297:1:0.34%:155,142,1,0 -Example1_ref 11564 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:154,143,0,0 0/0:.:297:297:0:0%:154,143,0,0 -Example1_ref 11565 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:157,146,0,0 0/0:.:303:303:0:0%:157,146,0,0 -Example1_ref 11566 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:151,147,0,0 0/0:.:298:298:0:0%:151,147,0,0 -Example1_ref 11567 . G A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:149,147,1,0 0/0:.:297:296:1:0.34%:149,147,1,0 -Example1_ref 11568 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:152,147,0,0 0/0:.:299:299:0:0%:152,147,0,0 -Example1_ref 11569 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:152,142,0,0 0/0:.:294:294:0:0%:152,142,0,0 -Example1_ref 11570 . T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:153,141,0,0 0/0:.:294:294:0:0%:153,141,0,0 -Example1_ref 11571 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:147,136,0,0 0/0:.:283:283:0:0%:147,136,0,0 -Example1_ref 11572 . G T . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:140,138,1,0 0/0:.:279:278:1:0.36%:140,138,1,0 -Example1_ref 11573 . G T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:131,142,1,0 0/0:.:274:273:1:0.36%:131,142,1,0 -Example1_ref 11574 . C . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:149,141,0,0 0/0:.:290:290:0:0%:149,141,0,0 -Example1_ref 11575 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:153,142,0,0 0/0:.:295:295:0:0%:153,142,0,0 -Example1_ref 11576 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:152,145,0,0 0/0:.:297:297:0:0%:152,145,0,0 -Example1_ref 11577 . C A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:291:1:0.34%:150,141,0,1 0/0:.:293:291:1:0.34%:150,141,0,1 -Example1_ref 11578 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:150,148,0,0 0/0:.:298:298:0:0%:150,148,0,0 -Example1_ref 11579 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:146,147,0,0 0/0:.:293:293:0:0%:146,147,0,0 -Example1_ref 11580 . AC A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:1:0.34%:145,148,1,0 0/0:.:295:293:1:0.34%:145,148,1,0 -Example1_ref 11581 . C T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:149,141,0,1 0/0:.:291:290:1:0.34%:149,141,0,1 -Example1_ref 11582 . C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:148,145,0,0 0/0:.:293:293:0:0%:148,145,0,0 -Example1_ref 11583 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:149,145,0,0 0/0:.:294:294:0:0%:149,145,0,0 -Example1_ref 11584 . A C . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:151,147,1,0 0/0:.:299:298:1:0.33%:151,147,1,0 -Example1_ref 11585 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:150,140,0,0 0/0:.:290:290:0:0%:150,140,0,0 -Example1_ref 11586 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:147,146,0,0 0/0:.:293:293:0:0%:147,146,0,0 -Example1_ref 11587 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:144,144,0,0 0/0:.:288:288:0:0%:144,144,0,0 -Example1_ref 11588 . T . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:143,144,0,0 0/0:.:287:287:0:0%:143,144,0,0 -Example1_ref 11589 . C CTGTCTCTT . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:142,145,1,0 0/0:.:288:287:1:0.35%:142,145,1,0 -Example1_ref 11590 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:141,137,0,0 0/0:.:278:278:0:0%:141,137,0,0 -Example1_ref 11591 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:141,137,0,0 0/0:.:278:278:0:0%:141,137,0,0 -Example1_ref 11592 . G . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:135,137,0,0 0/0:.:272:272:0:0%:135,137,0,0 -Example1_ref 11593 . C . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:144,132,0,0 0/0:.:276:276:0:0%:144,132,0,0 -Example1_ref 11594 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:141,134,0,0 0/0:.:275:275:0:0%:141,134,0,0 -Example1_ref 11595 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:145,134,0,0 0/0:.:279:279:0:0%:145,134,0,0 -Example1_ref 11596 . T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:150,139,0,0 0/0:.:289:289:0:0%:150,139,0,0 -Example1_ref 11597 . T C . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:145,139,0,1 0/0:.:285:284:1:0.35%:145,139,0,1 -Example1_ref 11598 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:147,141,0,0 0/0:.:288:288:0:0%:147,141,0,0 -Example1_ref 11599 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:146,141,0,0 0/0:.:287:287:0:0%:146,141,0,0 -Example1_ref 11600 . C A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:144,139,0,1 0/0:.:284:283:1:0.35%:144,139,0,1 -Example1_ref 11601 . C . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:142,139,0,0 0/0:.:281:281:0:0%:142,139,0,0 -Example1_ref 11602 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:140,142,0,0 0/0:.:282:282:0:0%:140,142,0,0 -Example1_ref 11603 . C . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:135,142,0,0 0/0:.:277:277:0:0%:135,142,0,0 -Example1_ref 11604 . A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:134,140,0,0 0/0:.:274:274:0:0%:134,140,0,0 -Example1_ref 11605 . A AT . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:134,140,0,1 0/0:.:275:274:1:0.36%:134,140,0,1 -Example1_ref 11606 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:137,135,0,0 0/0:.:272:272:0:0%:137,135,0,0 -Example1_ref 11607 . C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:134,139,0,0 0/0:.:273:273:0:0%:134,139,0,0 -Example1_ref 11608 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:134,140,0,0 0/0:.:274:274:0:0%:134,140,0,0 -Example1_ref 11609 . C . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:134,142,0,0 0/0:.:276:276:0:0%:134,142,0,0 -Example1_ref 11610 . A AG . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:134,141,0,1 0/0:.:276:275:1:0.36%:134,141,0,1 -Example1_ref 11611 . G . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:135,139,0,0 0/0:.:274:274:0:0%:135,139,0,0 -Example1_ref 11612 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:137,140,0,0 0/0:.:277:277:0:0%:137,140,0,0 -Example1_ref 11613 . A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:141,142,0,0 0/0:.:283:283:0:0%:141,142,0,0 -Example1_ref 11614 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:140,140,0,0 0/0:.:280:280:0:0%:140,140,0,0 -Example1_ref 11615 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:140,139,0,0 0/0:.:279:279:0:0%:140,139,0,0 -Example1_ref 11616 . T . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:142,139,0,0 0/0:.:281:281:0:0%:142,139,0,0 -Example1_ref 11617 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:142,143,0,0 0/0:.:285:285:0:0%:142,143,0,0 -Example1_ref 11618 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:143,143,0,0 0/0:.:286:286:0:0%:143,143,0,0 -Example1_ref 11619 . CT C . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:138,140,1,0 0/0:.:279:278:1:0.36%:138,140,1,0 -Example1_ref 11620 . T . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:0:0%:140,129,0,0 0/0:.:270:269:0:0%:140,129,0,0 -Example1_ref 11621 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:139,130,0,0 0/0:.:269:269:0:0%:139,130,0,0 -Example1_ref 11622 . C . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:140,123,0,0 0/0:.:263:263:0:0%:140,123,0,0 -Example1_ref 11623 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:139,123,0,0 0/0:.:262:262:0:0%:139,123,0,0 -Example1_ref 11624 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:137,125,0,0 0/0:.:262:262:0:0%:137,125,0,0 -Example1_ref 11625 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:139,120,0,0 0/0:.:259:259:0:0%:139,120,0,0 -Example1_ref 11626 . G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:140,120,0,0 0/0:.:260:260:0:0%:140,120,0,0 -Example1_ref 11627 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:139,119,0,0 0/0:.:258:258:0:0%:139,119,0,0 -Example1_ref 11628 . T TA . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=6.8824E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:2:0.78%:133,120,2,0 0/0:.:255:253:2:0.78%:133,120,2,0 -Example1_ref 11629 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:137,124,0,0 0/0:.:261:261:0:0%:137,124,0,0 -Example1_ref 11630 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:138,124,0,0 0/0:.:262:262:0:0%:138,124,0,0 -Example1_ref 11631 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:141,123,0,0 0/0:.:264:264:0:0%:141,123,0,0 -Example1_ref 11632 . A . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:142,123,0,0 0/0:.:265:265:0:0%:142,123,0,0 -Example1_ref 11633 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:132,124,0,0 0/0:.:256:256:0:0%:132,124,0,0 -Example1_ref 11634 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:0:0%:136,125,0,0 0/0:.:262:261:0:0%:136,125,0,0 -Example1_ref 11635 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:136,125,0,0 0/0:.:261:261:0:0%:136,125,0,0 -Example1_ref 11636 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:133,126,0,0 0/0:.:259:259:0:0%:133,126,0,0 -Example1_ref 11637 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:135,125,0,0 0/0:.:260:260:0:0%:135,125,0,0 -Example1_ref 11638 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:134,125,0,0 0/0:.:259:259:0:0%:134,125,0,0 -Example1_ref 11639 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:136,126,0,0 0/0:.:262:262:0:0%:136,126,0,0 -Example1_ref 11640 . C . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:0:0%:135,125,0,0 0/0:.:261:260:0:0%:135,125,0,0 -Example1_ref 11641 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:134,121,0,0 0/0:.:255:255:0:0%:134,121,0,0 -Example1_ref 11642 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:125,120,0,0 0/0:.:245:245:0:0%:125,120,0,0 -Example1_ref 11643 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:131,122,0,0 0/0:.:253:253:0:0%:131,122,0,0 -Example1_ref 11644 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:131,123,0,0 0/0:.:254:254:0:0%:131,123,0,0 -Example1_ref 11645 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:131,124,0,0 0/0:.:255:255:0:0%:131,124,0,0 -Example1_ref 11646 . G T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:130,121,1,0 0/0:.:252:251:1:0.4%:130,121,1,0 -Example1_ref 11647 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:132,119,0,0 0/0:.:251:251:0:0%:132,119,0,0 -Example1_ref 11648 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:132,122,0,0 0/0:.:254:254:0:0%:132,122,0,0 -Example1_ref 11649 . A ATG . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:132,119,0,1 0/0:.:252:251:1:0.4%:132,119,0,1 -Example1_ref 11650 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:131,119,0,0 0/0:.:250:250:0:0%:131,119,0,0 -Example1_ref 11651 . G T . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:129,123,1,0 0/0:.:253:252:1:0.4%:129,123,1,0 -Example1_ref 11652 . T . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:133,123,0,0 0/0:.:256:256:0:0%:133,123,0,0 -Example1_ref 11653 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:132,123,0,0 0/0:.:255:255:0:0%:132,123,0,0 -Example1_ref 11654 . T . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:0:0%:136,119,0,0 0/0:.:256:255:0:0%:136,119,0,0 -Example1_ref 11655 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:141,120,0,0 0/0:.:261:261:0:0%:141,120,0,0 -Example1_ref 11656 . A T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:140,121,1,0 0/0:.:262:261:1:0.38%:140,121,1,0 -Example1_ref 11657 . C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:135,120,0,0 0/0:.:255:255:0:0%:135,120,0,0 -Example1_ref 11658 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:139,116,0,0 0/0:.:255:255:0:0%:139,116,0,0 -Example1_ref 11659 . A T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:134,116,1,0 0/0:.:251:250:1:0.4%:134,116,1,0 -Example1_ref 11660 . G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:126,117,0,0 0/0:.:243:243:0:0%:126,117,0,0 -Example1_ref 11661 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:134,120,0,0 0/0:.:254:254:0:0%:134,120,0,0 -Example1_ref 11662 . C A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:245:1:0.41%:131,114,0,1 0/0:.:247:245:1:0.41%:131,114,0,1 -Example1_ref 11663 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:133,114,0,0 0/0:.:247:247:0:0%:133,114,0,0 -Example1_ref 11664 . C A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:137,110,1,0 0/0:.:248:247:1:0.4%:137,110,1,0 -Example1_ref 11665 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:140,116,0,0 0/0:.:256:256:0:0%:140,116,0,0 -Example1_ref 11666 . C A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:140,111,0,1 0/0:.:252:251:1:0.4%:140,111,0,1 -Example1_ref 11667 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:137,116,0,0 0/0:.:253:253:0:0%:137,116,0,0 -Example1_ref 11668 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:136,114,0,0 0/0:.:250:250:0:0%:136,114,0,0 -Example1_ref 11669 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:138,113,0,0 0/0:.:251:251:0:0%:138,113,0,0 -Example1_ref 11670 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:141,114,0,0 0/0:.:255:255:0:0%:141,114,0,0 -Example1_ref 11671 . C . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:140,110,0,0 0/0:.:250:250:0:0%:140,110,0,0 -Example1_ref 11672 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:143,110,0,0 0/0:.:253:253:0:0%:143,110,0,0 -Example1_ref 11673 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:144,109,0,0 0/0:.:253:253:0:0%:144,109,0,0 -Example1_ref 11674 . A . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:148,117,0,0 0/0:.:265:265:0:0%:148,117,0,0 -Example1_ref 11675 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:145,116,0,0 0/0:.:261:261:0:0%:145,116,0,0 -Example1_ref 11676 . T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:147,120,0,0 0/0:.:267:267:0:0%:147,120,0,0 -Example1_ref 11677 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:143,121,0,0 0/0:.:264:264:0:0%:143,121,0,0 -Example1_ref 11678 . T C . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:142,120,1,0 0/0:.:263:262:1:0.38%:142,120,1,0 -Example1_ref 11679 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:144,117,0,0 0/0:.:261:261:0:0%:144,117,0,0 -Example1_ref 11680 . A G . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:145,117,1,0 0/0:.:263:262:1:0.38%:145,117,1,0 -Example1_ref 11681 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:135,111,0,0 0/0:.:246:246:0:0%:135,111,0,0 -Example1_ref 11682 . C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:137,115,0,0 0/0:.:252:252:0:0%:137,115,0,0 -Example1_ref 11683 . TGG T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:140,116,1,0 0/0:.:257:256:1:0.39%:140,116,1,0 -Example1_ref 11684 . G . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:137,114,0,0 0/0:.:251:251:0:0%:137,114,0,0 -Example1_ref 11685 . G . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:136,113,0,0 0/0:.:249:249:0:0%:136,113,0,0 -Example1_ref 11686 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:133,115,0,0 0/0:.:248:248:0:0%:133,115,0,0 -Example1_ref 11687 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:137,114,0,0 0/0:.:251:251:0:0%:137,114,0,0 -Example1_ref 11688 . T TAAGAGACAG . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:135,113,0,1 0/0:.:249:248:1:0.4%:135,113,0,1 -Example1_ref 11689 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:137,116,0,0 0/0:.:253:253:0:0%:137,116,0,0 -Example1_ref 11690 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:139,111,0,0 0/0:.:250:250:0:0%:139,111,0,0 -Example1_ref 11691 . T A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:139,114,1,0 0/0:.:255:253:1:0.39%:139,114,1,0 -Example1_ref 11692 . C A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:138,113,1,0 0/0:.:252:251:1:0.4%:138,113,1,0 -Example1_ref 11693 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:139,116,0,0 0/0:.:255:255:0:0%:139,116,0,0 -Example1_ref 11694 . C CA . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:141,112,0,1 0/0:.:255:253:1:0.39%:141,112,0,1 -Example1_ref 11695 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:139,116,0,0 0/0:.:255:255:0:0%:139,116,0,0 -Example1_ref 11696 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:0:0%:140,115,0,0 0/0:.:256:255:0:0%:140,115,0,0 -Example1_ref 11697 . A ACTGTCTCT . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:138,115,1,0 0/0:.:255:253:1:0.39%:138,115,1,0 -Example1_ref 11698 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:134,117,0,0 0/0:.:251:251:0:0%:134,117,0,0 -Example1_ref 11699 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:136,118,0,0 0/0:.:254:254:0:0%:136,118,0,0 -Example1_ref 11700 . C A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:132,112,0,1 0/0:.:245:244:1:0.41%:132,112,0,1 -Example1_ref 11701 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:131,117,0,0 0/0:.:248:248:0:0%:131,117,0,0 -Example1_ref 11702 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:133,117,0,0 0/0:.:250:250:0:0%:133,117,0,0 -Example1_ref 11703 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:132,110,0,0 0/0:.:242:242:0:0%:132,110,0,0 -Example1_ref 11704 . G . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:135,116,0,0 0/0:.:251:251:0:0%:135,116,0,0 -Example1_ref 11705 . A ATCTG . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:137,112,1,0 0/0:.:250:249:1:0.4%:137,112,1,0 -Example1_ref 11706 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:135,114,0,0 0/0:.:249:249:0:0%:135,114,0,0 -Example1_ref 11707 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:132,114,0,0 0/0:.:246:246:0:0%:132,114,0,0 -Example1_ref 11708 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:125,115,0,0 0/0:.:240:240:0:0%:125,115,0,0 -Example1_ref 11709 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:127,113,0,0 0/0:.:240:240:0:0%:127,113,0,0 -Example1_ref 11710 . A T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:124,114,1,0 0/0:.:239:238:1:0.42%:124,114,1,0 -Example1_ref 11711 . G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:123,114,0,0 0/0:.:237:237:0:0%:123,114,0,0 -Example1_ref 11712 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:122,105,0,0 0/0:.:227:227:0:0%:122,105,0,0 -Example1_ref 11713 . G C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:121,100,1,0 0/0:.:223:221:1:0.45%:121,100,1,0 -Example1_ref 11714 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:119,101,0,0 0/0:.:220:220:0:0%:119,101,0,0 -Example1_ref 11715 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:117,102,0,0 0/0:.:219:219:0:0%:117,102,0,0 -Example1_ref 11716 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:123,103,0,0 0/0:.:226:226:0:0%:123,103,0,0 -Example1_ref 11717 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:120,100,0,0 0/0:.:220:220:0:0%:120,100,0,0 -Example1_ref 11718 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:217:217:0:0%:116,101,0,0 -Example1_ref 11719 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:121,103,0,0 0/0:.:224:224:0:0%:121,103,0,0 -Example1_ref 11720 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:114,101,0,0 0/0:.:215:215:0:0%:114,101,0,0 -Example1_ref 11721 . A G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:113,102,1,0 0/0:.:216:215:1:0.46%:113,102,1,0 -Example1_ref 11722 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:120,100,0,0 0/0:.:220:220:0:0%:120,100,0,0 -Example1_ref 11723 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:120,101,0,0 0/0:.:221:221:0:0%:120,101,0,0 -Example1_ref 11724 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:120,103,0,0 0/0:.:223:223:0:0%:120,103,0,0 -Example1_ref 11725 . A C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:120,105,1,0 0/0:.:226:225:1:0.44%:120,105,1,0 -Example1_ref 11726 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:117,103,0,0 0/0:.:220:220:0:0%:117,103,0,0 -Example1_ref 11727 . C G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:117,101,1,0 0/0:.:219:218:1:0.46%:117,101,1,0 -Example1_ref 11728 . C A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:209:1:0.48%:110,99,0,1 0/0:.:211:209:1:0.48%:110,99,0,1 -Example1_ref 11729 . G T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:112,101,1,0 0/0:.:214:213:1:0.47%:112,101,1,0 -Example1_ref 11730 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:117,103,0,0 0/0:.:220:220:0:0%:117,103,0,0 -Example1_ref 11731 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:216:216:0:0%:113,103,0,0 -Example1_ref 11732 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:117,101,0,0 0/0:.:218:218:0:0%:117,101,0,0 -Example1_ref 11733 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:217:217:0:0%:116,101,0,0 -Example1_ref 11734 . C A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:116,100,0,1 0/0:.:217:216:1:0.46%:116,100,0,1 -Example1_ref 11735 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:115,103,0,0 0/0:.:218:218:0:0%:115,103,0,0 -Example1_ref 11736 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:116,104,0,0 0/0:.:220:220:0:0%:116,104,0,0 -Example1_ref 11737 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:213:213:0:0%:109,104,0,0 -Example1_ref 11738 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:113,106,0,0 0/0:.:219:219:0:0%:113,106,0,0 -Example1_ref 11739 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:114,108,0,0 0/0:.:222:222:0:0%:114,108,0,0 -Example1_ref 11740 . G T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:107,108,0,1 0/0:.:216:215:1:0.46%:107,108,0,1 -Example1_ref 11741 . G T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=6.8836E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:217:2:0.91%:102,115,2,0 0/0:.:219:217:2:0.91%:102,115,2,0 -Example1_ref 11742 . A AG . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:111,116,0,1 0/0:.:228:227:1:0.44%:111,116,0,1 -Example1_ref 11743 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:108,116,0,0 0/0:.:224:224:0:0%:108,116,0,0 -Example1_ref 11744 . A AG . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=6.8833E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:225:2:0.88%:111,114,0,2 0/0:.:227:225:2:0.88%:111,114,0,2 -Example1_ref 11745 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:107,114,0,0 0/0:.:221:221:0:0%:107,114,0,0 -Example1_ref 11746 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:103,115,0,0 0/0:.:218:218:0:0%:103,115,0,0 -Example1_ref 11747 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:101,117,0,0 0/0:.:218:218:0:0%:101,117,0,0 -Example1_ref 11748 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:102,117,0,0 0/0:.:219:219:0:0%:102,117,0,0 -Example1_ref 11749 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:106,115,0,0 0/0:.:221:221:0:0%:106,115,0,0 -Example1_ref 11750 . G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:107,115,0,0 0/0:.:222:222:0:0%:107,115,0,0 -Example1_ref 11751 . TA T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:107,119,1,0 0/0:.:227:226:1:0.44%:107,119,1,0 -Example1_ref 11752 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:106,120,0,0 0/0:.:226:226:0:0%:106,120,0,0 -Example1_ref 11753 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:104,116,0,0 0/0:.:220:220:0:0%:104,116,0,0 -Example1_ref 11754 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:219:219:0:0%:106,113,0,0 -Example1_ref 11755 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:105,110,0,0 0/0:.:215:215:0:0%:105,110,0,0 -Example1_ref 11756 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:105,109,0,0 0/0:.:214:214:0:0%:105,109,0,0 -Example1_ref 11757 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:106,109,0,0 0/0:.:215:215:0:0%:106,109,0,0 -Example1_ref 11758 . C A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:112,109,0,1 0/0:.:222:221:1:0.45%:112,109,0,1 -Example1_ref 11759 . C A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:213:1:0.47%:104,109,0,1 0/0:.:215:213:1:0.47%:104,109,0,1 -Example1_ref 11760 . C A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:107,111,0,1 0/0:.:219:218:1:0.46%:107,111,0,1 -Example1_ref 11761 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:107,113,0,0 0/0:.:220:220:0:0%:107,113,0,0 -Example1_ref 11762 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:104,113,0,0 0/0:.:217:217:0:0%:104,113,0,0 -Example1_ref 11763 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:108,111,0,0 0/0:.:219:219:0:0%:108,111,0,0 -Example1_ref 11764 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:99,111,0,0 0/0:.:210:210:0:0%:99,111,0,0 -Example1_ref 11765 . G T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:103,114,1,0 0/0:.:218:217:1:0.46%:103,114,1,0 -Example1_ref 11766 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:106,114,0,0 0/0:.:220:220:0:0%:106,114,0,0 -Example1_ref 11767 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:105,114,0,0 0/0:.:219:219:0:0%:105,114,0,0 -Example1_ref 11768 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:105,114,0,0 0/0:.:219:219:0:0%:105,114,0,0 -Example1_ref 11769 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:105,111,0,0 0/0:.:216:216:0:0%:105,111,0,0 -Example1_ref 11770 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:108,116,0,0 0/0:.:224:224:0:0%:108,116,0,0 -Example1_ref 11771 . C A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:104,114,0,1 0/0:.:219:218:1:0.46%:104,114,0,1 -Example1_ref 11772 . A C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:103,117,1,0 0/0:.:221:220:1:0.45%:103,117,1,0 -Example1_ref 11773 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:108,115,0,0 0/0:.:223:223:0:0%:108,115,0,0 -Example1_ref 11774 . G A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:103,118,1,0 0/0:.:223:221:1:0.45%:103,118,1,0 -Example1_ref 11775 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:106,115,0,0 0/0:.:221:221:0:0%:106,115,0,0 -Example1_ref 11776 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:104,116,0,0 0/0:.:220:220:0:0%:104,116,0,0 -Example1_ref 11777 . A C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:220:1:0.45%:106,114,1,0 0/0:.:222:220:1:0.45%:106,114,1,0 -Example1_ref 11778 . T TGTC . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:108,111,1,0 0/0:.:220:219:1:0.45%:108,111,1,0 -Example1_ref 11779 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:110,113,0,0 0/0:.:223:223:0:0%:110,113,0,0 -Example1_ref 11780 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:113,112,0,0 0/0:.:225:225:0:0%:113,112,0,0 -Example1_ref 11781 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:111,115,0,0 0/0:.:226:226:0:0%:111,115,0,0 -Example1_ref 11782 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:111,115,0,0 0/0:.:226:226:0:0%:111,115,0,0 -Example1_ref 11783 . G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:112,112,0,0 0/0:.:224:224:0:0%:112,112,0,0 -Example1_ref 11784 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:222:0:0%:108,114,0,0 0/0:.:224:222:0:0%:108,114,0,0 -Example1_ref 11785 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:219:219:0:0%:106,113,0,0 -Example1_ref 11786 . A C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:103,108,1,0 0/0:.:212:211:1:0.47%:103,108,1,0 -Example1_ref 11787 . A T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:104,107,1,0 0/0:.:212:211:1:0.47%:104,107,1,0 -Example1_ref 11788 . T G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:106,105,1,0 0/0:.:212:211:1:0.47%:106,105,1,0 -Example1_ref 11789 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:106,110,0,0 0/0:.:216:216:0:0%:106,110,0,0 -Example1_ref 11790 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:103,107,0,0 0/0:.:210:210:0:0%:103,107,0,0 -Example1_ref 11791 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:105,109,0,0 0/0:.:214:214:0:0%:105,109,0,0 -Example1_ref 11792 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:0:0%:105,111,0,0 0/0:.:217:216:0:0%:105,111,0,0 -Example1_ref 11793 . T TTATA . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:103,109,1,0 0/0:.:213:212:1:0.47%:103,109,1,0 -Example1_ref 11794 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:104,109,0,0 0/0:.:213:213:0:0%:104,109,0,0 -Example1_ref 11795 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:105,116,0,0 0/0:.:221:221:0:0%:105,116,0,0 -Example1_ref 11796 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:103,113,0,0 0/0:.:216:216:0:0%:103,113,0,0 -Example1_ref 11797 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:101,115,0,0 0/0:.:216:216:0:0%:101,115,0,0 -Example1_ref 11798 . G C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:103,112,1,0 0/0:.:216:215:1:0.46%:103,112,1,0 -Example1_ref 11799 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:102,115,0,0 0/0:.:217:217:0:0%:102,115,0,0 -Example1_ref 11800 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:102,114,0,0 0/0:.:216:216:0:0%:102,114,0,0 -Example1_ref 11801 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:103,116,0,0 0/0:.:219:219:0:0%:103,116,0,0 -Example1_ref 11802 . T A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:101,115,0,1 0/0:.:217:216:1:0.46%:101,115,0,1 -Example1_ref 11803 . C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:103,119,0,0 0/0:.:222:222:0:0%:103,119,0,0 -Example1_ref 11804 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:101,124,0,0 0/0:.:225:225:0:0%:101,124,0,0 -Example1_ref 11805 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:100,121,0,0 0/0:.:221:221:0:0%:100,121,0,0 -Example1_ref 11806 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:100,123,0,0 0/0:.:223:223:0:0%:100,123,0,0 -Example1_ref 11807 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:97,124,0,0 0/0:.:221:221:0:0%:97,124,0,0 -Example1_ref 11808 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:94,124,0,0 0/0:.:218:218:0:0%:94,124,0,0 -Example1_ref 11809 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:103,125,0,0 0/0:.:228:228:0:0%:103,125,0,0 -Example1_ref 11810 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:105,124,0,0 0/0:.:229:229:0:0%:105,124,0,0 -Example1_ref 11811 . C . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:105,123,0,0 0/0:.:228:228:0:0%:105,123,0,0 -Example1_ref 11812 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:102,125,0,0 0/0:.:227:227:0:0%:102,125,0,0 -Example1_ref 11813 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:106,128,0,0 0/0:.:234:234:0:0%:106,128,0,0 -Example1_ref 11814 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:108,127,0,0 0/0:.:235:235:0:0%:108,127,0,0 -Example1_ref 11815 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:231:231:0:0%:103,128,0,0 -Example1_ref 11816 . G . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:101,125,0,0 0/0:.:226:226:0:0%:101,125,0,0 -Example1_ref 11817 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:103,121,0,0 0/0:.:224:224:0:0%:103,121,0,0 -Example1_ref 11818 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:106,125,0,0 0/0:.:231:231:0:0%:106,125,0,0 -Example1_ref 11819 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:105,126,0,0 0/0:.:231:231:0:0%:105,126,0,0 -Example1_ref 11820 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:103,124,0,0 0/0:.:227:227:0:0%:103,124,0,0 -Example1_ref 11821 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:97,128,0,0 0/0:.:225:225:0:0%:97,128,0,0 -Example1_ref 11822 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:101,128,0,0 0/0:.:229:229:0:0%:101,128,0,0 -Example1_ref 11823 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:104,125,0,0 0/0:.:229:229:0:0%:104,125,0,0 -Example1_ref 11824 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:105,126,0,0 0/0:.:231:231:0:0%:105,126,0,0 -Example1_ref 11825 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:103,123,0,0 0/0:.:226:226:0:0%:103,123,0,0 -Example1_ref 11826 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:103,124,0,0 0/0:.:227:227:0:0%:103,124,0,0 -Example1_ref 11827 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:103,120,0,0 0/0:.:223:223:0:0%:103,120,0,0 -Example1_ref 11828 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:104,123,0,0 0/0:.:227:227:0:0%:104,123,0,0 -Example1_ref 11829 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:105,124,0,0 0/0:.:229:229:0:0%:105,124,0,0 -Example1_ref 11830 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:105,122,0,0 0/0:.:227:227:0:0%:105,122,0,0 -Example1_ref 11831 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:104,121,0,0 0/0:.:225:225:0:0%:104,121,0,0 -Example1_ref 11832 . C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:104,122,0,0 0/0:.:226:226:0:0%:104,122,0,0 -Example1_ref 11833 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:100,121,0,0 0/0:.:221:221:0:0%:100,121,0,0 -Example1_ref 11834 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:101,123,0,0 0/0:.:224:224:0:0%:101,123,0,0 -Example1_ref 11835 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:104,121,0,0 0/0:.:225:225:0:0%:104,121,0,0 -Example1_ref 11836 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:101,121,0,0 0/0:.:222:222:0:0%:101,121,0,0 -Example1_ref 11837 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:100,119,0,0 0/0:.:219:219:0:0%:100,119,0,0 -Example1_ref 11838 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:101,119,0,0 0/0:.:220:220:0:0%:101,119,0,0 -Example1_ref 11839 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:98,121,0,0 0/0:.:219:219:0:0%:98,121,0,0 -Example1_ref 11840 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:99,118,0,0 0/0:.:217:217:0:0%:99,118,0,0 -Example1_ref 11841 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:99,118,0,0 0/0:.:217:217:0:0%:99,118,0,0 -Example1_ref 11842 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:95,116,0,0 0/0:.:211:211:0:0%:95,116,0,0 -Example1_ref 11843 . C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:95,120,0,0 0/0:.:215:215:0:0%:95,120,0,0 -Example1_ref 11844 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:89,121,0,0 0/0:.:210:210:0:0%:89,121,0,0 -Example1_ref 11845 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:211:211:0:0%:89,122,0,0 -Example1_ref 11846 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:211:211:0:0%:89,122,0,0 -Example1_ref 11847 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:92,122,0,0 0/0:.:214:214:0:0%:92,122,0,0 -Example1_ref 11848 . T A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:88,118,0,1 0/0:.:207:206:1:0.48%:88,118,0,1 -Example1_ref 11849 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:85,123,0,0 0/0:.:208:208:0:0%:85,123,0,0 -Example1_ref 11850 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:88,121,0,0 0/0:.:209:209:0:0%:88,121,0,0 -Example1_ref 11851 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:199:199:0:0%:79,120,0,0 -Example1_ref 11852 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:82,121,0,0 0/0:.:203:203:0:0%:82,121,0,0 -Example1_ref 11853 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:90,122,0,0 0/0:.:212:212:0:0%:90,122,0,0 -Example1_ref 11854 . TG T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:87,121,0,1 0/0:.:209:208:1:0.48%:87,121,0,1 -Example1_ref 11855 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:90,117,0,0 0/0:.:207:207:0:0%:90,117,0,0 -Example1_ref 11856 . G T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:1:0.49%:86,117,1,0 0/0:.:204:203:1:0.49%:86,117,1,0 -Example1_ref 11857 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:90,124,0,0 0/0:.:214:214:0:0%:90,124,0,0 -Example1_ref 11858 . A ACTG . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:93,127,1,0 0/0:.:221:220:1:0.45%:93,127,1,0 -Example1_ref 11859 . T G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:94,125,0,1 0/0:.:220:219:1:0.45%:94,125,0,1 -Example1_ref 11860 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:106,125,0,0 0/0:.:231:231:0:0%:106,125,0,0 -Example1_ref 11861 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:102,122,0,0 0/0:.:224:224:0:0%:102,122,0,0 -Example1_ref 11862 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:105,125,0,0 0/0:.:230:230:0:0%:105,125,0,0 -Example1_ref 11863 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:105,127,0,0 0/0:.:232:232:0:0%:105,127,0,0 -Example1_ref 11864 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:0:0%:102,119,0,0 0/0:.:222:221:0:0%:102,119,0,0 -Example1_ref 11865 . G A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:225:1:0.44%:99,126,1,0 0/0:.:227:225:1:0.44%:99,126,1,0 -Example1_ref 11866 . A ACAG . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:222:1:0.45%:99,123,0,1 0/0:.:224:222:1:0.45%:99,123,0,1 -Example1_ref 11867 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:98,122,0,0 0/0:.:220:220:0:0%:98,122,0,0 -Example1_ref 11868 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:102,123,0,0 0/0:.:225:225:0:0%:102,123,0,0 -Example1_ref 11869 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:96,116,0,0 0/0:.:212:212:0:0%:96,116,0,0 -Example1_ref 11870 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:104,114,0,0 0/0:.:218:218:0:0%:104,114,0,0 -Example1_ref 11871 . G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:106,118,0,0 0/0:.:224:224:0:0%:106,118,0,0 -Example1_ref 11872 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:105,116,0,0 0/0:.:221:221:0:0%:105,116,0,0 -Example1_ref 11873 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:110,116,0,0 0/0:.:226:226:0:0%:110,116,0,0 -Example1_ref 11874 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:110,113,0,0 0/0:.:223:223:0:0%:110,113,0,0 -Example1_ref 11875 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:119,116,0,0 0/0:.:235:235:0:0%:119,116,0,0 -Example1_ref 11876 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:123,118,0,0 0/0:.:241:241:0:0%:123,118,0,0 -Example1_ref 11877 . C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:126,116,0,0 0/0:.:242:242:0:0%:126,116,0,0 -Example1_ref 11878 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:125,119,0,0 0/0:.:244:244:0:0%:125,119,0,0 -Example1_ref 11879 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:121,115,0,0 0/0:.:236:236:0:0%:121,115,0,0 -Example1_ref 11880 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:121,116,0,0 0/0:.:237:237:0:0%:121,116,0,0 -Example1_ref 11881 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:125,117,0,0 0/0:.:242:242:0:0%:125,117,0,0 -Example1_ref 11882 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:125,115,0,0 0/0:.:240:240:0:0%:125,115,0,0 -Example1_ref 11883 . G A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:121,114,0,1 0/0:.:236:235:1:0.42%:121,114,0,1 -Example1_ref 11884 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:123,113,0,0 0/0:.:236:236:0:0%:123,113,0,0 -Example1_ref 11885 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:121,116,0,0 0/0:.:237:237:0:0%:121,116,0,0 -Example1_ref 11886 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:238:238:0:0%:122,116,0,0 -Example1_ref 11887 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:125,117,0,0 0/0:.:242:242:0:0%:125,117,0,0 -Example1_ref 11888 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:125,115,0,0 0/0:.:240:240:0:0%:125,115,0,0 -Example1_ref 11889 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:238:238:0:0%:122,116,0,0 -Example1_ref 11890 . G GCTGTCTCTTAT . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:237:1:0.42%:121,116,1,0 0/0:.:239:237:1:0.42%:121,116,1,0 -Example1_ref 11891 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:0:0%:120,112,0,0 0/0:.:233:232:0:0%:120,112,0,0 -Example1_ref 11892 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:122,109,0,0 0/0:.:231:231:0:0%:122,109,0,0 -Example1_ref 11893 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:114,111,0,0 0/0:.:225:225:0:0%:114,111,0,0 -Example1_ref 11894 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:119,114,0,0 0/0:.:233:233:0:0%:119,114,0,0 -Example1_ref 11895 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:119,112,0,0 0/0:.:231:231:0:0%:119,112,0,0 -Example1_ref 11896 . A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:121,115,0,0 0/0:.:236:236:0:0%:121,115,0,0 -Example1_ref 11897 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:238:238:0:0%:122,116,0,0 -Example1_ref 11898 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:122,114,0,0 0/0:.:236:236:0:0%:122,114,0,0 -Example1_ref 11899 . C . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:123,116,0,0 0/0:.:239:239:0:0%:123,116,0,0 -Example1_ref 11900 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:124,119,0,0 0/0:.:243:243:0:0%:124,119,0,0 -Example1_ref 11901 . G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:124,118,0,0 0/0:.:242:242:0:0%:124,118,0,0 -Example1_ref 11902 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:125,118,0,0 0/0:.:243:243:0:0%:125,118,0,0 -Example1_ref 11903 . A C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:127,120,0,1 0/0:.:248:247:1:0.4%:127,120,0,1 -Example1_ref 11904 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:126,121,0,0 0/0:.:247:247:0:0%:126,121,0,0 -Example1_ref 11905 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:131,120,0,0 0/0:.:251:251:0:0%:131,120,0,0 -Example1_ref 11906 . TATG T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:129,121,1,0 0/0:.:251:250:1:0.4%:129,121,1,0 -Example1_ref 11907 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:131,122,0,0 0/0:.:253:253:0:0%:131,122,0,0 -Example1_ref 11908 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:130,115,0,0 0/0:.:245:245:0:0%:130,115,0,0 -Example1_ref 11909 . G A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:244:1:0.41%:125,119,0,1 0/0:.:246:244:1:0.41%:125,119,0,1 -Example1_ref 11910 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:140,120,0,0 0/0:.:260:260:0:0%:140,120,0,0 -Example1_ref 11911 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:140,118,0,0 0/0:.:258:258:0:0%:140,118,0,0 -Example1_ref 11912 . C . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:139,120,0,0 0/0:.:259:259:0:0%:139,120,0,0 -Example1_ref 11913 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:139,121,0,0 0/0:.:260:260:0:0%:139,121,0,0 -Example1_ref 11914 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:140,121,0,0 0/0:.:261:261:0:0%:140,121,0,0 -Example1_ref 11915 . GC G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:257:1:0.39%:138,119,0,1 0/0:.:259:257:1:0.39%:138,119,0,1 -Example1_ref 11916 . C A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:259:1:0.38%:142,117,0,1 0/0:.:261:259:1:0.38%:142,117,0,1 -Example1_ref 11917 . A T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=7.5046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:271:1:0.37%:143,128,0,1 0/0:.:272:271:1:0.37%:143,128,0,1 -Example1_ref 11918 . C . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:145,123,0,0 0/0:.:268:268:0:0%:145,123,0,0 -Example1_ref 11919 . A AG . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:144,124,0,1 0/0:.:269:268:1:0.37%:144,124,0,1 -Example1_ref 11920 . A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:152,129,0,0 0/0:.:281:281:0:0%:152,129,0,0 -Example1_ref 11921 . T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:154,129,0,0 0/0:.:284:283:0:0%:154,129,0,0 -Example1_ref 11922 . A C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:161,135,1,0 0/0:.:297:296:1:0.34%:161,135,1,0 -Example1_ref 11923 . T A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:2:0.68%:162,131,0,2 0/0:.:295:293:2:0.68%:162,131,0,2 -Example1_ref 11924 . G GAGAC . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:161,133,0,1 0/0:.:295:294:1:0.34%:161,133,0,1 -Example1_ref 11925 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:163,137,0,0 0/0:.:300:300:0:0%:163,137,0,0 -Example1_ref 11926 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:159,139,0,0 0/0:.:298:298:0:0%:159,139,0,0 -Example1_ref 11927 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:167,148,0,0 0/0:.:315:315:0:0%:167,148,0,0 -Example1_ref 11928 . C . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:166,146,0,0 0/0:.:312:312:0:0%:166,146,0,0 -Example1_ref 11929 . AC A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:164,143,0,1 0/0:.:308:307:1:0.32%:164,143,0,1 -Example1_ref 11930 . C . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:165,142,0,0 0/0:.:307:307:0:0%:165,142,0,0 -Example1_ref 11931 . TA T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:168,140,1,0 0/0:.:309:308:1:0.32%:168,140,1,0 -Example1_ref 11932 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:172,148,0,0 0/0:.:320:320:0:0%:172,148,0,0 -Example1_ref 11933 . A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:170,147,0,0 0/0:.:317:317:0:0%:170,147,0,0 -Example1_ref 11934 . G . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:176,147,0,0 0/0:.:323:323:0:0%:176,147,0,0 -Example1_ref 11935 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:175,148,0,0 0/0:.:323:323:0:0%:175,148,0,0 -Example1_ref 11936 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:176,147,0,0 0/0:.:323:323:0:0%:176,147,0,0 -Example1_ref 11937 . G . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:172,151,0,0 0/0:.:323:323:0:0%:172,151,0,0 -Example1_ref 11938 . G T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:170,154,1,0 0/0:.:325:324:1:0.31%:170,154,1,0 -Example1_ref 11939 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:173,157,0,0 0/0:.:330:330:0:0%:173,157,0,0 -Example1_ref 11940 . C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:179,149,0,0 0/0:.:328:328:0:0%:179,149,0,0 -Example1_ref 11941 . T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:179,149,0,0 0/0:.:328:328:0:0%:179,149,0,0 -Example1_ref 11942 . T A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:176,151,1,0 0/0:.:328:327:1:0.3%:176,151,1,0 -Example1_ref 11943 . T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:173,154,0,0 0/0:.:327:327:0:0%:173,154,0,0 -Example1_ref 11944 . G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:175,155,0,0 0/0:.:330:330:0:0%:175,155,0,0 -Example1_ref 11945 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:174,153,0,0 0/0:.:327:327:0:0%:174,153,0,0 -Example1_ref 11946 . G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:175,153,0,0 0/0:.:328:328:0:0%:175,153,0,0 -Example1_ref 11947 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:177,157,0,0 0/0:.:334:334:0:0%:177,157,0,0 -Example1_ref 11948 . C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:172,156,0,0 0/0:.:328:328:0:0%:172,156,0,0 -Example1_ref 11949 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:171,155,0,0 0/0:.:326:326:0:0%:171,155,0,0 -Example1_ref 11950 . A G . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:173,152,0,1 0/0:.:326:325:1:0.31%:173,152,0,1 -Example1_ref 11951 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:169,154,0,0 0/0:.:323:323:0:0%:169,154,0,0 -Example1_ref 11952 . T . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:172,154,0,0 0/0:.:326:326:0:0%:172,154,0,0 -Example1_ref 11953 . T A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:2:0.61%:170,155,2,0 0/0:.:327:325:2:0.61%:170,155,2,0 -Example1_ref 11954 . G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:175,157,0,0 0/0:.:332:332:0:0%:175,157,0,0 -Example1_ref 11955 . T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:177,157,0,0 0/0:.:334:334:0:0%:177,157,0,0 -Example1_ref 11956 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:0:0%:170,157,0,0 0/0:.:328:327:0:0%:170,157,0,0 -Example1_ref 11957 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:170,153,0,0 0/0:.:323:323:0:0%:170,153,0,0 -Example1_ref 11958 . G A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:170,151,0,1 0/0:.:322:321:1:0.31%:170,151,0,1 -Example1_ref 11959 . C . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:175,152,0,0 0/0:.:327:327:0:0%:175,152,0,0 -Example1_ref 11960 . G . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:174,155,0,0 0/0:.:329:329:0:0%:174,155,0,0 -Example1_ref 11961 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:174,155,0,0 0/0:.:329:329:0:0%:174,155,0,0 -Example1_ref 11962 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:176,157,0,0 0/0:.:333:333:0:0%:176,157,0,0 -Example1_ref 11963 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:173,164,0,0 0/0:.:337:337:0:0%:173,164,0,0 -Example1_ref 11964 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:173,170,0,0 0/0:.:343:343:0:0%:173,170,0,0 -Example1_ref 11965 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:175,167,0,0 0/0:.:342:342:0:0%:175,167,0,0 -Example1_ref 11966 . A T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:169,166,0,1 0/0:.:336:335:1:0.3%:169,166,0,1 -Example1_ref 11967 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:170,167,0,0 0/0:.:337:337:0:0%:170,167,0,0 -Example1_ref 11968 . C A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:1:0.3%:164,168,1,0 0/0:.:333:332:1:0.3%:164,168,1,0 -Example1_ref 11969 . A AG . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:343:1:0.29%:173,170,0,1 0/0:.:344:343:1:0.29%:173,170,0,1 -Example1_ref 11970 . G . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:172,169,0,0 0/0:.:341:341:0:0%:172,169,0,0 -Example1_ref 11971 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:172,177,0,0 0/0:.:349:349:0:0%:172,177,0,0 -Example1_ref 11972 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:168,178,0,0 0/0:.:346:346:0:0%:168,178,0,0 -Example1_ref 11973 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:173,180,0,0 0/0:.:353:353:0:0%:173,180,0,0 -Example1_ref 11974 . T . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:173,174,0,0 0/0:.:347:347:0:0%:173,174,0,0 -Example1_ref 11975 . G T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:170,177,0,1 0/0:.:348:347:1:0.29%:170,177,0,1 -Example1_ref 11976 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:169,179,0,0 0/0:.:348:348:0:0%:169,179,0,0 -Example1_ref 11977 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:171,183,0,0 0/0:.:354:354:0:0%:171,183,0,0 -Example1_ref 11978 . G . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:171,179,0,0 0/0:.:350:350:0:0%:171,179,0,0 -Example1_ref 11979 . A T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:170,174,1,0 0/0:.:345:344:1:0.29%:170,174,1,0 -Example1_ref 11980 . T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:175,175,0,0 0/0:.:350:350:0:0%:175,175,0,0 -Example1_ref 11981 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:353:0:0%:177,176,0,0 0/0:.:354:353:0:0%:177,176,0,0 -Example1_ref 11982 . T . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:0:0%:177,182,0,0 0/0:.:360:359:0:0%:177,182,0,0 -Example1_ref 11983 . G GC . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:170,181,1,0 0/0:.:353:351:1:0.28%:170,181,1,0 -Example1_ref 11984 . T C . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:180,176,0,1 0/0:.:357:356:1:0.28%:180,176,0,1 -Example1_ref 11985 . G A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:355:1:0.28%:174,181,0,1 0/0:.:357:355:1:0.28%:174,181,0,1 -Example1_ref 11986 . T TATAAGAGACAG . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:362:1:0.28%:182,180,0,1 0/0:.:364:362:1:0.28%:182,180,0,1 -Example1_ref 11987 . T . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:184,182,0,0 0/0:.:366:366:0:0%:184,182,0,0 -Example1_ref 11988 . C A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:364:1:0.27%:184,180,1,0 0/0:.:366:364:1:0.27%:184,180,1,0 -Example1_ref 11989 . A . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:189,186,0,0 0/0:.:375:375:0:0%:189,186,0,0 -Example1_ref 11990 . G . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:184,186,0,0 0/0:.:370:370:0:0%:184,186,0,0 -Example1_ref 11991 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:187,183,0,0 0/0:.:370:370:0:0%:187,183,0,0 -Example1_ref 11992 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:185,181,0,0 0/0:.:366:366:0:0%:185,181,0,0 -Example1_ref 11993 . G . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:184,178,0,0 0/0:.:362:362:0:0%:184,178,0,0 -Example1_ref 11994 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:187,179,0,0 0/0:.:366:366:0:0%:187,179,0,0 -Example1_ref 11995 . C A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:185,166,0,1 0/0:.:352:351:1:0.28%:185,166,0,1 -Example1_ref 11996 . C . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:181,178,0,0 0/0:.:359:359:0:0%:181,178,0,0 -Example1_ref 11997 . T A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:186,171,0,1 0/0:.:358:357:1:0.28%:186,171,0,1 -Example1_ref 11998 . T . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:188,179,0,0 0/0:.:367:367:0:0%:188,179,0,0 -Example1_ref 11999 . G . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:183,180,0,0 0/0:.:363:363:0:0%:183,180,0,0 -Example1_ref 12000 . C . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:181,173,0,0 0/0:.:354:354:0:0%:181,173,0,0 -Example1_ref 12001 . C . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:186,183,0,0 0/0:.:369:369:0:0%:186,183,0,0 -Example1_ref 12002 . A . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:188,187,0,0 0/0:.:375:375:0:0%:188,187,0,0 -Example1_ref 12003 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:186,184,0,0 0/0:.:370:370:0:0%:186,184,0,0 -Example1_ref 12004 . A . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:186,186,0,0 0/0:.:372:372:0:0%:186,186,0,0 -Example1_ref 12005 . G . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:182,186,0,0 0/0:.:368:368:0:0%:182,186,0,0 -Example1_ref 12006 . C . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:180,186,0,0 0/0:.:366:366:0:0%:180,186,0,0 -Example1_ref 12007 . A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:185,189,0,0 0/0:.:374:374:0:0%:185,189,0,0 -Example1_ref 12008 . T . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:186,182,0,0 0/0:.:368:368:0:0%:186,182,0,0 -Example1_ref 12009 . T . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:186,182,0,0 0/0:.:368:368:0:0%:186,182,0,0 -Example1_ref 12010 . G . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:174,182,0,0 0/0:.:356:356:0:0%:174,182,0,0 -Example1_ref 12011 . C . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:182,180,0,0 0/0:.:362:362:0:0%:182,180,0,0 -Example1_ref 12012 . G A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:183,187,1,0 0/0:.:371:370:1:0.27%:183,187,1,0 -Example1_ref 12013 . A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:181,190,0,0 0/0:.:371:371:0:0%:181,190,0,0 -Example1_ref 12014 . C CA . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=5.8932E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:357:10:2.72%:174,183,7,3 0/0:.:368:357:10:2.72%:174,183,7,3 -Example1_ref 12015 . A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:174,185,0,0 0/0:.:359:359:0:0%:174,185,0,0 -Example1_ref 12016 . A C . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:171,184,0,1 0/0:.:356:355:1:0.28%:171,184,0,1 -Example1_ref 12017 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:171,191,0,0 0/0:.:362:362:0:0%:171,191,0,0 -Example1_ref 12018 . A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:168,189,0,0 0/0:.:357:357:0:0%:168,189,0,0 -Example1_ref 12019 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:0:0%:173,192,0,0 0/0:.:366:365:0:0%:173,192,0,0 -Example1_ref 12020 . A T . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:171,194,1,0 0/0:.:366:365:1:0.27%:171,194,1,0 -Example1_ref 12021 . T . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:376:0:0%:180,196,0,0 0/0:.:377:376:0:0%:180,196,0,0 -Example1_ref 12022 . G T . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:178,192,1,0 0/0:.:371:370:1:0.27%:178,192,1,0 -Example1_ref 12023 . T . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:170,196,0,0 0/0:.:366:366:0:0%:170,196,0,0 -Example1_ref 12024 . G . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:175,195,0,0 0/0:.:370:370:0:0%:175,195,0,0 -Example1_ref 12025 . G . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:176,198,0,0 0/0:.:374:374:0:0%:176,198,0,0 -Example1_ref 12026 . A . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:176,197,0,0 0/0:.:373:373:0:0%:176,197,0,0 -Example1_ref 12027 . T . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:176,195,0,0 0/0:.:371:371:0:0%:176,195,0,0 -Example1_ref 12028 . T . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:181,194,0,0 0/0:.:375:375:0:0%:181,194,0,0 -Example1_ref 12029 . C T . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:1:0.26%:181,198,0,1 0/0:.:380:379:1:0.26%:181,198,0,1 -Example1_ref 12030 . A . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:182,199,0,0 0/0:.:381:381:0:0%:182,199,0,0 -Example1_ref 12031 . T . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:182,194,0,0 0/0:.:376:376:0:0%:182,194,0,0 -Example1_ref 12032 . T . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:184,199,0,0 0/0:.:383:383:0:0%:184,199,0,0 -Example1_ref 12033 . T . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:183,200,0,0 0/0:.:383:383:0:0%:183,200,0,0 -Example1_ref 12034 . A . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:183,205,0,0 0/0:.:388:388:0:0%:183,205,0,0 -Example1_ref 12035 . TC T . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:184,201,0,1 0/0:.:386:385:1:0.26%:184,201,0,1 -Example1_ref 12036 . C . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:183,204,0,0 0/0:.:387:387:0:0%:183,204,0,0 -Example1_ref 12037 . A . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:183,206,0,0 0/0:.:389:389:0:0%:183,206,0,0 -Example1_ref 12038 . G . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:183,200,0,0 0/0:.:383:383:0:0%:183,200,0,0 -Example1_ref 12039 . G GTGTTT . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:182,203,1,0 0/0:.:386:385:1:0.26%:182,203,1,0 -Example1_ref 12040 . A . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:378:0:0%:176,202,0,0 0/0:.:378:378:0:0%:176,202,0,0 -Example1_ref 12041 . G GCT . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:177,200,1,0 0/0:.:378:377:1:0.26%:177,200,1,0 -Example1_ref 12042 . G . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:183,204,0,0 0/0:.:387:387:0:0%:183,204,0,0 -Example1_ref 12043 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:178,205,0,0 0/0:.:383:383:0:0%:178,205,0,0 -Example1_ref 12044 . A . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:180,205,0,0 0/0:.:385:385:0:0%:180,205,0,0 -Example1_ref 12045 . G . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:185,205,0,0 0/0:.:390:390:0:0%:185,205,0,0 -Example1_ref 12046 . G . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:190,206,0,0 0/0:.:396:396:0:0%:190,206,0,0 -Example1_ref 12047 . A . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:181,209,0,0 0/0:.:390:390:0:0%:181,209,0,0 -Example1_ref 12048 . T A . PASS DP=782;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:390:1:0.26%:182,208,1,0 0/0:.:391:390:1:0.26%:182,208,1,0 -Example1_ref 12049 . G . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:182,206,0,0 0/0:.:388:388:0:0%:182,206,0,0 -Example1_ref 12050 . A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:176,210,0,0 0/0:.:387:386:0:0%:176,210,0,0 -Example1_ref 12051 . T G . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:380:1:0.26%:174,206,0,1 0/0:.:383:380:1:0.26%:174,206,0,1 -Example1_ref 12052 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:174,209,0,0 0/0:.:383:383:0:0%:174,209,0,0 -Example1_ref 12053 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:173,210,0,0 0/0:.:383:383:0:0%:173,210,0,0 -Example1_ref 12054 . G GCTGTCTCTTA . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:380:1:0.26%:168,212,1,0 0/0:.:382:380:1:0.26%:168,212,1,0 -Example1_ref 12055 . T . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:168,204,0,0 0/0:.:372:372:0:0%:168,204,0,0 -Example1_ref 12056 . G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:158,199,0,0 0/0:.:357:357:0:0%:158,199,0,0 -Example1_ref 12057 . G A . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:158,192,0,1 0/0:.:351:350:1:0.28%:158,192,0,1 -Example1_ref 12058 . G T . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=6.8803E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:355:2:0.56%:156,199,1,1 0/0:.:357:355:2:0.56%:156,199,1,1 -Example1_ref 12059 . C . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:166,196,0,0 0/0:.:362:362:0:0%:166,196,0,0 -Example1_ref 12060 . T . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:161,201,0,0 0/0:.:362:362:0:0%:161,201,0,0 -Example1_ref 12061 . C . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:163,202,0,0 0/0:.:365:365:0:0%:163,202,0,0 -Example1_ref 12062 . G . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:167,205,0,0 0/0:.:372:372:0:0%:167,205,0,0 -Example1_ref 12063 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:161,205,0,0 0/0:.:366:366:0:0%:161,205,0,0 -Example1_ref 12064 . A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:164,206,0,0 0/0:.:370:370:0:0%:164,206,0,0 -Example1_ref 12065 . AC A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:155,204,0,1 0/0:.:360:359:1:0.28%:155,204,0,1 -Example1_ref 12066 . C . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:0:0%:156,201,0,0 0/0:.:358:357:0:0%:156,201,0,0 -Example1_ref 12067 . A C . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:154,205,1,0 0/0:.:360:359:1:0.28%:154,205,1,0 -Example1_ref 12068 . C A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=6.8803E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:352:2:0.56%:153,199,0,2 0/0:.:354:352:2:0.56%:153,199,0,2 -Example1_ref 12069 . C . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:150,204,0,0 0/0:.:354:354:0:0%:150,204,0,0 -Example1_ref 12070 . T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:152,204,0,0 0/0:.:356:356:0:0%:152,204,0,0 -Example1_ref 12071 . G . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:145,203,0,0 0/0:.:348:348:0:0%:145,203,0,0 -Example1_ref 12072 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:150,208,0,0 0/0:.:358:358:0:0%:150,208,0,0 -Example1_ref 12073 . C . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:151,199,0,0 0/0:.:350:350:0:0%:151,199,0,0 -Example1_ref 12074 . C A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=6.8805E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:343:2:0.58%:148,195,0,2 0/0:.:345:343:2:0.58%:148,195,0,2 -Example1_ref 12075 . C T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:150,201,1,0 0/0:.:352:351:1:0.28%:150,201,1,0 -Example1_ref 12076 . G A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:156,201,0,1 0/0:.:358:357:1:0.28%:156,201,0,1 -Example1_ref 12077 . T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:155,203,0,0 0/0:.:358:358:0:0%:155,203,0,0 -Example1_ref 12078 . T C . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:155,202,0,1 0/0:.:358:357:1:0.28%:155,202,0,1 -Example1_ref 12079 . A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:156,203,0,0 0/0:.:359:359:0:0%:156,203,0,0 -Example1_ref 12080 . GA G . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:157,203,1,0 0/0:.:361:360:1:0.28%:157,203,1,0 -Example1_ref 12081 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:155,197,0,0 0/0:.:352:352:0:0%:155,197,0,0 -Example1_ref 12082 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:157,203,0,0 0/0:.:360:360:0:0%:157,203,0,0 -Example1_ref 12083 . T . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:164,196,0,0 0/0:.:360:360:0:0%:164,196,0,0 -Example1_ref 12084 . T G . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:162,198,1,0 0/0:.:361:360:1:0.28%:162,198,1,0 -Example1_ref 12085 . G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:0:0%:153,203,0,0 0/0:.:357:356:0:0%:153,203,0,0 -Example1_ref 12086 . T . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:160,203,0,0 0/0:.:363:363:0:0%:160,203,0,0 -Example1_ref 12087 . T . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:162,205,0,0 0/0:.:367:367:0:0%:162,205,0,0 -Example1_ref 12088 . A ACTG . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:364:1:0.27%:159,205,1,0 0/0:.:365:364:1:0.27%:159,205,1,0 -Example1_ref 12089 . T . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:0:0%:161,197,0,0 0/0:.:359:358:0:0%:161,197,0,0 -Example1_ref 12090 . C A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=6.2392E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:351:5:1.4%:155,196,5,0 0/0:.:356:351:5:1.4%:155,196,5,0 -Example1_ref 12091 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:160,195,0,0 0/0:.:355:355:0:0%:160,195,0,0 -Example1_ref 12092 . G . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:159,197,0,0 0/0:.:356:356:0:0%:159,197,0,0 -Example1_ref 12093 . G A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:346:1:0.29%:153,193,0,1 0/0:.:348:346:1:0.29%:153,193,0,1 -Example1_ref 12094 . G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:153,190,0,0 0/0:.:343:343:0:0%:153,190,0,0 -Example1_ref 12095 . G T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:337:1:0.3%:142,195,1,0 0/0:.:338:337:1:0.3%:142,195,1,0 -Example1_ref 12096 . T A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:153,198,0,1 0/0:.:352:351:1:0.28%:153,198,0,1 -Example1_ref 12097 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:154,200,0,0 0/0:.:354:354:0:0%:154,200,0,0 -Example1_ref 12098 . G GCTGTCTC . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:366:1:0.27%:165,201,1,0 0/0:.:368:366:1:0.27%:165,201,1,0 -Example1_ref 12099 . T . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:166,203,0,0 0/0:.:369:369:0:0%:166,203,0,0 -Example1_ref 12100 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:163,203,0,0 0/0:.:366:366:0:0%:163,203,0,0 -Example1_ref 12101 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:161,205,0,0 0/0:.:366:366:0:0%:161,205,0,0 -Example1_ref 12102 . T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:165,193,0,0 0/0:.:358:358:0:0%:165,193,0,0 -Example1_ref 12103 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:167,195,0,0 0/0:.:362:362:0:0%:167,195,0,0 -Example1_ref 12104 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:166,194,0,0 0/0:.:360:360:0:0%:166,194,0,0 -Example1_ref 12105 . C . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:163,200,0,0 0/0:.:363:363:0:0%:163,200,0,0 -Example1_ref 12106 . A ACT . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:163,193,1,0 0/0:.:357:356:1:0.28%:163,193,1,0 -Example1_ref 12107 . G . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:160,188,0,0 0/0:.:348:348:0:0%:160,188,0,0 -Example1_ref 12108 . G . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:164,184,0,0 0/0:.:348:348:0:0%:164,184,0,0 -Example1_ref 12109 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:165,184,0,0 0/0:.:349:349:0:0%:165,184,0,0 -Example1_ref 12110 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:161,177,0,0 0/0:.:338:338:0:0%:161,177,0,0 -Example1_ref 12111 . C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:157,182,0,0 0/0:.:339:339:0:0%:157,182,0,0 -Example1_ref 12112 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:158,184,0,0 0/0:.:342:342:0:0%:158,184,0,0 -Example1_ref 12113 . G . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:164,183,0,0 0/0:.:347:347:0:0%:164,183,0,0 -Example1_ref 12114 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:159,181,0,0 0/0:.:340:340:0:0%:159,181,0,0 -Example1_ref 12115 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:164,184,0,0 0/0:.:348:348:0:0%:164,184,0,0 -Example1_ref 12116 . C . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:162,180,0,0 0/0:.:343:342:0:0%:162,180,0,0 -Example1_ref 12117 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:160,172,0,0 0/0:.:332:332:0:0%:160,172,0,0 -Example1_ref 12118 . T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:160,168,0,0 0/0:.:328:328:0:0%:160,168,0,0 -Example1_ref 12119 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:162,171,0,0 0/0:.:333:333:0:0%:162,171,0,0 -Example1_ref 12120 . G . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:165,170,0,0 0/0:.:335:335:0:0%:165,170,0,0 -Example1_ref 12121 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:169,171,0,0 0/0:.:340:340:0:0%:169,171,0,0 -Example1_ref 12122 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:162,168,0,0 0/0:.:330:330:0:0%:162,168,0,0 -Example1_ref 12123 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:160,165,0,0 0/0:.:325:325:0:0%:160,165,0,0 -Example1_ref 12124 . A G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:161,165,0,1 0/0:.:327:326:1:0.31%:161,165,0,1 -Example1_ref 12125 . A T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:159,169,1,0 0/0:.:329:328:1:0.3%:159,169,1,0 -Example1_ref 12126 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:160,165,0,0 0/0:.:325:325:0:0%:160,165,0,0 -Example1_ref 12127 . A C . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:163,163,1,0 0/0:.:327:326:1:0.31%:163,163,1,0 -Example1_ref 12128 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:166,163,0,0 0/0:.:329:329:0:0%:166,163,0,0 -Example1_ref 12129 . G . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:165,157,0,0 0/0:.:322:322:0:0%:165,157,0,0 -Example1_ref 12130 . T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:164,157,0,0 0/0:.:321:321:0:0%:164,157,0,0 -Example1_ref 12131 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:164,160,0,0 0/0:.:324:324:0:0%:164,160,0,0 -Example1_ref 12132 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:166,160,0,0 0/0:.:326:326:0:0%:166,160,0,0 -Example1_ref 12133 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:166,156,0,0 0/0:.:322:322:0:0%:166,156,0,0 -Example1_ref 12134 . T . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:163,155,0,0 0/0:.:318:318:0:0%:163,155,0,0 -Example1_ref 12135 . C A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:170,155,0,1 0/0:.:326:325:1:0.31%:170,155,0,1 -Example1_ref 12136 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:175,150,0,0 0/0:.:325:325:0:0%:175,150,0,0 -Example1_ref 12137 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:174,155,0,0 0/0:.:329:329:0:0%:174,155,0,0 -Example1_ref 12138 . C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:174,157,0,0 0/0:.:331:331:0:0%:174,157,0,0 -Example1_ref 12139 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:176,156,0,0 0/0:.:332:332:0:0%:176,156,0,0 -Example1_ref 12140 . G . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:178,153,0,0 0/0:.:331:331:0:0%:178,153,0,0 -Example1_ref 12141 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:171,154,0,0 0/0:.:325:325:0:0%:171,154,0,0 -Example1_ref 12142 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:177,152,0,0 0/0:.:329:329:0:0%:177,152,0,0 -Example1_ref 12143 . G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:174,154,0,0 0/0:.:328:328:0:0%:174,154,0,0 -Example1_ref 12144 . G . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:194,165,0,0 0/0:.:359:359:0:0%:194,165,0,0 -Example1_ref 12145 . T . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:199,178,0,0 0/0:.:377:377:0:0%:199,178,0,0 -Example1_ref 12146 . A . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:387:0:0%:198,189,0,0 0/0:.:388:387:0:0%:198,189,0,0 -Example1_ref 12147 . C T . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=6.88E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:374:2:0.53%:195,179,0,2 0/0:.:377:374:2:0.53%:195,179,0,2 -Example1_ref 12148 . A G . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:380:1:0.26%:193,187,1,0 0/0:.:381:380:1:0.26%:193,187,1,0 -Example1_ref 12149 . A AG . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:386:1:0.26%:198,188,0,1 0/0:.:388:386:1:0.26%:198,188,0,1 -Example1_ref 12150 . A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:198,189,0,0 0/0:.:387:387:0:0%:198,189,0,0 -Example1_ref 12151 . C . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:215,185,0,0 0/0:.:400:400:0:0%:215,185,0,0 -Example1_ref 12152 . C A . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=6.8797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:396:2:0.5%:211,185,0,2 0/0:.:399:396:2:0.5%:211,185,0,2 -Example1_ref 12153 . C G . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:389:1:0.26%:208,181,0,1 0/0:.:390:389:1:0.26%:208,181,0,1 -Example1_ref 12154 . A . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:216,184,0,0 0/0:.:400:400:0:0%:216,184,0,0 -Example1_ref 12155 . T G . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:218,182,0,1 0/0:.:401:400:1:0.25%:218,182,0,1 -Example1_ref 12156 . A . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:217,185,0,0 0/0:.:402:402:0:0%:217,185,0,0 -Example1_ref 12157 . T . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:220,185,0,0 0/0:.:405:405:0:0%:220,185,0,0 -Example1_ref 12158 . A . PASS DP=808;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:223,181,0,0 0/0:.:404:404:0:0%:223,181,0,0 -Example1_ref 12159 . C G . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:1:0.25%:222,176,0,1 0/0:.:399:398:1:0.25%:222,176,0,1 -Example1_ref 12160 . T . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:219,167,0,0 0/0:.:386:386:0:0%:219,167,0,0 -Example1_ref 12161 . T . PASS DP=782;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:391:0:0%:222,169,0,0 0/0:.:391:391:0:0%:222,169,0,0 -Example1_ref 12162 . G T . PASS DP=786;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:392:1:0.25%:223,169,0,1 0/0:.:393:392:1:0.25%:223,169,0,1 -Example1_ref 12163 . G . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:218,165,0,0 0/0:.:383:383:0:0%:218,165,0,0 -Example1_ref 12164 . A AC . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:396:1:0.25%:223,173,1,0 0/0:.:397:396:1:0.25%:223,173,1,0 -Example1_ref 12165 . T . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:221,169,0,0 0/0:.:390:390:0:0%:221,169,0,0 -Example1_ref 12166 . G . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:241,169,0,0 0/0:.:410:410:0:0%:241,169,0,0 -Example1_ref 12167 . T A . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:409:1:0.24%:244,165,0,1 0/0:.:411:409:1:0.24%:244,165,0,1 -Example1_ref 12168 . A C . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:412:1:0.24%:244,168,1,0 0/0:.:415:412:1:0.24%:244,168,1,0 -Example1_ref 12169 . T . PASS DP=814;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:407:0:0%:244,163,0,0 0/0:.:407:407:0:0%:244,163,0,0 -Example1_ref 12170 . T A . PASS DP=814;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:406:1:0.25%:238,168,0,1 0/0:.:407:406:1:0.25%:238,168,0,1 -Example1_ref 12171 . T . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:238,167,0,0 0/0:.:405:405:0:0%:238,167,0,0 -Example1_ref 12172 . A . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:243,167,0,0 0/0:.:410:410:0:0%:243,167,0,0 -Example1_ref 12173 . C A . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=6.5684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:398:3:0.75%:236,162,0,3 0/0:.:401:398:3:0.75%:236,162,0,3 -Example1_ref 12174 . C G . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=6.8797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:400:2:0.5%:234,166,1,1 0/0:.:402:400:2:0.5%:234,166,1,1 -Example1_ref 12175 . A G . PASS DP=796;SS=0;SSC=0;GPV=1E0;SPV=6.8797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:396:2:0.5%:234,162,0,2 0/0:.:398:396:2:0.5%:234,162,0,2 -Example1_ref 12176 . G . PASS DP=788;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:394:394:0:0%:234,160,0,0 0/0:.:394:394:0:0%:234,160,0,0 -Example1_ref 12177 . G A . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:1:0.25%:237,161,0,1 0/0:.:399:398:1:0.25%:237,161,0,1 -Example1_ref 12178 . C A . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=6.88E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:377:2:0.53%:232,145,0,2 0/0:.:379:377:2:0.53%:232,145,0,2 -Example1_ref 12179 . A AG . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:401:1:0.25%:232,169,0,1 0/0:.:402:401:1:0.25%:232,169,0,1 -Example1_ref 12180 . A . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:244,173,0,0 0/0:.:417:417:0:0%:244,173,0,0 -Example1_ref 12181 . T . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:255,170,0,0 0/0:.:425:425:0:0%:255,170,0,0 -Example1_ref 12182 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:254,177,0,0 0/0:.:431:431:0:0%:254,177,0,0 -Example1_ref 12183 . T . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:248,168,0,0 0/0:.:416:416:0:0%:248,168,0,0 -Example1_ref 12184 . T C . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:253,175,0,1 0/0:.:429:428:1:0.23%:253,175,0,1 -Example1_ref 12185 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:252,179,0,0 0/0:.:431:431:0:0%:252,179,0,0 -Example1_ref 12186 . A . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:255,173,0,0 0/0:.:428:428:0:0%:255,173,0,0 -Example1_ref 12187 . A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:248,175,0,0 0/0:.:423:423:0:0%:248,175,0,0 -Example1_ref 12188 . A . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:245,175,0,0 0/0:.:420:420:0:0%:245,175,0,0 -Example1_ref 12189 . T . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:419:0:0%:247,172,0,0 0/0:.:419:419:0:0%:247,172,0,0 -Example1_ref 12190 . A . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:249,171,0,0 0/0:.:420:420:0:0%:249,171,0,0 -Example1_ref 12191 . G . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:252,168,0,0 0/0:.:420:420:0:0%:252,168,0,0 -Example1_ref 12192 . G . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:251,174,0,0 0/0:.:425:425:0:0%:251,174,0,0 -Example1_ref 12193 . A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:253,176,0,0 0/0:.:429:429:0:0%:253,176,0,0 -Example1_ref 12194 . TC T . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:1:0.24%:252,170,1,0 0/0:.:423:422:1:0.24%:252,170,1,0 -Example1_ref 12195 . C . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:0:0%:251,167,0,0 0/0:.:419:418:0:0%:251,167,0,0 -Example1_ref 12196 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:255,178,0,0 0/0:.:433:433:0:0%:255,178,0,0 -Example1_ref 12197 . G . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:252,178,0,0 0/0:.:430:430:0:0%:252,178,0,0 -Example1_ref 12198 . C A . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:255,170,0,1 0/0:.:426:425:1:0.23%:255,170,0,1 -Example1_ref 12199 . A . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:257,180,0,0 0/0:.:437:437:0:0%:257,180,0,0 -Example1_ref 12200 . G . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:258,177,0,0 0/0:.:435:435:0:0%:258,177,0,0 -Example1_ref 12201 . A . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:259,175,0,0 0/0:.:434:434:0:0%:259,175,0,0 -Example1_ref 12202 . A . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:258,172,0,0 0/0:.:430:430:0:0%:258,172,0,0 -Example1_ref 12203 . A . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:255,180,0,0 0/0:.:435:435:0:0%:255,180,0,0 -Example1_ref 12204 . C . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:262,176,0,0 0/0:.:438:438:0:0%:262,176,0,0 -Example1_ref 12205 . A . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:265,174,0,0 0/0:.:439:439:0:0%:265,174,0,0 -Example1_ref 12206 . G A . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:263,171,0,1 0/0:.:435:434:1:0.23%:263,171,0,1 -Example1_ref 12207 . G A . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:1:0.23%:265,172,0,1 0/0:.:438:437:1:0.23%:265,172,0,1 -Example1_ref 12208 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:266,174,0,0 0/0:.:440:440:0:0%:266,174,0,0 -Example1_ref 12209 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:266,177,0,0 0/0:.:443:443:0:0%:266,177,0,0 -Example1_ref 12210 . T . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:267,169,0,0 0/0:.:436:436:0:0%:267,169,0,0 -Example1_ref 12211 . A C . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:268,175,0,1 0/0:.:444:443:1:0.23%:268,175,0,1 -Example1_ref 12212 . T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:269,169,0,0 0/0:.:438:438:0:0%:269,169,0,0 -Example1_ref 12213 . C . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:266,165,0,0 0/0:.:431:431:0:0%:266,165,0,0 -Example1_ref 12214 . A T . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:274,174,1,0 0/0:.:449:448:1:0.22%:274,174,1,0 -Example1_ref 12215 . T C . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:447:1:0.22%:277,170,1,0 0/0:.:449:447:1:0.22%:277,170,1,0 -Example1_ref 12216 . C CTTGAT . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:1:0.22%:291,167,1,0 0/0:.:459:458:1:0.22%:291,167,1,0 -Example1_ref 12217 . A . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:288,170,0,0 0/0:.:458:458:0:0%:288,170,0,0 -Example1_ref 12218 . T C . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=6.8791E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:2:0.44%:292,165,0,2 0/0:.:459:457:2:0.44%:292,165,0,2 -Example1_ref 12219 . T . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:288,170,0,0 0/0:.:458:458:0:0%:288,170,0,0 -Example1_ref 12220 . A . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:288,174,0,0 0/0:.:462:462:0:0%:288,174,0,0 -Example1_ref 12221 . A . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:0:0%:284,174,0,0 0/0:.:459:458:0:0%:284,174,0,0 -Example1_ref 12222 . G GC . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:456:1:0.22%:284,172,1,0 0/0:.:458:456:1:0.22%:284,172,1,0 -Example1_ref 12223 . A ACAG . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:283,174,0,1 0/0:.:458:457:1:0.22%:283,174,0,1 -Example1_ref 12224 . G . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:282,170,0,0 0/0:.:452:452:0:0%:282,170,0,0 -Example1_ref 12225 . T . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:290,167,0,0 0/0:.:457:457:0:0%:290,167,0,0 -Example1_ref 12226 . T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:288,160,0,0 0/0:.:448:448:0:0%:288,160,0,0 -Example1_ref 12227 . C T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=6.8792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:445:2:0.45%:284,161,2,0 0/0:.:448:445:2:0.45%:284,161,2,0 -Example1_ref 12228 . C A . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:1:0.22%:282,168,0,1 0/0:.:451:450:1:0.22%:282,168,0,1 -Example1_ref 12229 . T . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:291,167,0,0 0/0:.:458:458:0:0%:291,167,0,0 -Example1_ref 12230 . T . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:291,165,0,0 0/0:.:456:456:0:0%:291,165,0,0 -Example1_ref 12231 . A . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:293,170,0,0 0/0:.:463:463:0:0%:293,170,0,0 -Example1_ref 12232 . T . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:0:0%:295,164,0,0 0/0:.:460:459:0:0%:295,164,0,0 -Example1_ref 12233 . T G . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:455:1:0.22%:291,164,1,0 0/0:.:456:455:1:0.22%:291,164,1,0 -Example1_ref 12234 . T . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:291,164,0,0 0/0:.:455:455:0:0%:291,164,0,0 -Example1_ref 12235 . T . PASS DP=934;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:297,170,0,0 0/0:.:467:467:0:0%:297,170,0,0 -Example1_ref 12236 . G . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:288,167,0,0 0/0:.:455:455:0:0%:288,167,0,0 -Example1_ref 12237 . G T . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=6.8792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:442:2:0.45%:275,167,2,0 0/0:.:444:442:2:0.45%:275,167,2,0 -Example1_ref 12238 . A G . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:278,170,0,1 0/0:.:449:448:1:0.22%:278,170,0,1 -Example1_ref 12239 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:285,165,0,0 0/0:.:450:450:0:0%:285,165,0,0 -Example1_ref 12240 . C . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:287,168,0,0 0/0:.:455:455:0:0%:287,168,0,0 -Example1_ref 12241 . A . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:282,168,0,0 0/0:.:450:450:0:0%:282,168,0,0 -Example1_ref 12242 . G . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:282,171,0,0 0/0:.:453:453:0:0%:282,171,0,0 -Example1_ref 12243 . T . PASS DP=912;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:285,171,0,0 0/0:.:456:456:0:0%:285,171,0,0 -Example1_ref 12244 . C T . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:1:0.22%:286,164,1,0 0/0:.:451:450:1:0.22%:286,164,1,0 -Example1_ref 12245 . A . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:284,177,0,0 0/0:.:461:461:0:0%:284,177,0,0 -Example1_ref 12246 . C . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:289,169,0,0 0/0:.:458:458:0:0%:289,169,0,0 -Example1_ref 12247 . T A . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:462:1:0.22%:290,172,0,1 0/0:.:463:462:1:0.22%:290,172,0,1 -Example1_ref 12248 . G A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:463:1:0.22%:289,174,0,1 0/0:.:465:463:1:0.22%:289,174,0,1 -Example1_ref 12249 . A . PASS DP=940;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:470:0:0%:291,179,0,0 0/0:.:470:470:0:0%:291,179,0,0 -Example1_ref 12250 . T . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:288,176,0,0 0/0:.:464:464:0:0%:288,176,0,0 -Example1_ref 12251 . G . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:284,180,0,0 0/0:.:464:464:0:0%:284,180,0,0 -Example1_ref 12252 . A . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:283,182,0,0 0/0:.:465:465:0:0%:283,182,0,0 -Example1_ref 12253 . A . PASS DP=928;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:282,182,0,0 0/0:.:464:464:0:0%:282,182,0,0 -Example1_ref 12254 . A . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:284,185,0,0 0/0:.:469:469:0:0%:284,185,0,0 -Example1_ref 12255 . G T . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:290,185,1,0 0/0:.:476:475:1:0.21%:290,185,1,0 -Example1_ref 12256 . A G . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:476:1:0.21%:292,184,0,1 0/0:.:477:476:1:0.21%:292,184,0,1 -Example1_ref 12257 . T . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:297,179,0,0 0/0:.:476:476:0:0%:297,179,0,0 -Example1_ref 12258 . C . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:293,180,0,0 0/0:.:473:473:0:0%:293,180,0,0 -Example1_ref 12259 . T . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:294,182,0,0 0/0:.:476:476:0:0%:294,182,0,0 -Example1_ref 12260 . G T . PASS DP=940;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:469:1:0.21%:291,178,0,1 0/0:.:470:469:1:0.21%:291,178,0,1 -Example1_ref 12261 . A . PASS DP=942;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:471:0:0%:287,184,0,0 0/0:.:471:471:0:0%:287,184,0,0 -Example1_ref 12262 . G . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:289,180,0,0 0/0:.:469:469:0:0%:289,180,0,0 -Example1_ref 12263 . G T . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:1:0.22%:282,177,1,0 0/0:.:460:459:1:0.22%:282,177,1,0 -Example1_ref 12264 . C A . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:443:1:0.23%:282,161,1,0 0/0:.:446:443:1:0.23%:282,161,1,0 -Example1_ref 12265 . A AG . PASS DP=934;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:465:1:0.21%:284,181,0,1 0/0:.:467:465:1:0.21%:284,181,0,1 -Example1_ref 12266 . C A . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:474:1:0.21%:305,169,0,1 0/0:.:475:474:1:0.21%:305,169,0,1 -Example1_ref 12267 . A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:305,180,0,0 0/0:.:485:485:0:0%:305,180,0,0 -Example1_ref 12268 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:306,182,0,0 0/0:.:488:488:0:0%:306,182,0,0 -Example1_ref 12269 . T . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:310,176,0,0 0/0:.:486:486:0:0%:310,176,0,0 -Example1_ref 12270 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:304,180,0,0 0/0:.:484:484:0:0%:304,180,0,0 -Example1_ref 12271 . A . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:311,188,0,0 0/0:.:499:499:0:0%:311,188,0,0 -Example1_ref 12272 . G T . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:309,188,0,1 0/0:.:498:497:1:0.2%:309,188,0,1 -Example1_ref 12273 . G T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:2:0.41%:305,183,2,0 0/0:.:490:488:2:0.41%:305,183,2,0 -Example1_ref 12274 . A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:303,189,0,0 0/0:.:492:492:0:0%:303,189,0,0 -Example1_ref 12275 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:308,176,0,0 0/0:.:484:484:0:0%:308,176,0,0 -Example1_ref 12276 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:307,181,0,0 0/0:.:488:488:0:0%:307,181,0,0 -Example1_ref 12277 . T G . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:307,177,0,1 0/0:.:485:484:1:0.21%:307,177,0,1 -Example1_ref 12278 . A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:313,180,0,0 0/0:.:493:493:0:0%:313,180,0,0 -Example1_ref 12279 . T . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:311,177,0,0 0/0:.:488:488:0:0%:311,177,0,0 -Example1_ref 12280 . C A . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:479:1:0.21%:308,171,0,1 0/0:.:481:479:1:0.21%:308,171,0,1 -Example1_ref 12281 . A . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:510:0:0%:310,200,0,0 0/0:.:510:510:0:0%:310,200,0,0 -Example1_ref 12282 . A . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:510:0:0%:307,203,0,0 0/0:.:510:510:0:0%:307,203,0,0 -Example1_ref 12283 . G . PASS DP=1018;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:509:0:0%:307,202,0,0 0/0:.:509:509:0:0%:307,202,0,0 -Example1_ref 12284 . A AC . PASS DP=1014;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:506:1:0.2%:302,204,0,1 0/0:.:507:506:1:0.2%:302,204,0,1 -Example1_ref 12285 . A G . PASS DP=1026;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:511:1:0.2%:305,206,1,0 0/0:.:513:511:1:0.2%:305,206,1,0 -Example1_ref 12286 . T A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=6.5672E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:503:3:0.59%:306,197,0,3 0/0:.:506:503:3:0.59%:306,197,0,3 -Example1_ref 12287 . C A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:499:1:0.2%:299,200,1,0 0/0:.:500:499:1:0.2%:299,200,1,0 -Example1_ref 12288 . T G . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:494:2:0.4%:298,196,0,2 0/0:.:496:494:2:0.4%:298,196,0,2 -Example1_ref 12289 . T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:297,202,0,0 0/0:.:499:499:0:0%:297,202,0,0 -Example1_ref 12290 . A . PASS DP=1016;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:298,210,0,0 0/0:.:508:508:0:0%:298,210,0,0 -Example1_ref 12291 . G . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:292,206,0,0 0/0:.:498:498:0:0%:292,206,0,0 -Example1_ref 12292 . T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:294,207,0,0 0/0:.:501:501:0:0%:294,207,0,0 -Example1_ref 12293 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:293,207,0,0 0/0:.:500:500:0:0%:293,207,0,0 -Example1_ref 12294 . A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:0:0%:291,206,0,0 0/0:.:498:497:0:0%:291,206,0,0 -Example1_ref 12295 . A . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:0:0%:296,207,0,0 0/0:.:504:503:0:0%:296,207,0,0 -Example1_ref 12296 . C A . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:487:2:0.41%:295,192,0,2 0/0:.:490:487:2:0.41%:295,192,0,2 -Example1_ref 12297 . C . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:0:0%:290,202,0,0 0/0:.:493:492:0:0%:290,202,0,0 -Example1_ref 12298 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:289,206,0,0 0/0:.:495:495:0:0%:289,206,0,0 -Example1_ref 12299 . G A . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:494:1:0.2%:287,207,0,1 0/0:.:496:494:1:0.2%:287,207,0,1 -Example1_ref 12300 . C . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:282,205,0,0 0/0:.:487:487:0:0%:282,205,0,0 -Example1_ref 12301 . A T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:1:0.2%:286,212,1,0 0/0:.:499:498:1:0.2%:286,212,1,0 -Example1_ref 12302 . A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:287,211,0,0 0/0:.:498:498:0:0%:287,211,0,0 -Example1_ref 12303 . A . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:277,212,0,0 0/0:.:489:489:0:0%:277,212,0,0 -Example1_ref 12304 . A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:280,212,0,0 0/0:.:492:492:0:0%:280,212,0,0 -Example1_ref 12305 . G . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:280,211,0,0 0/0:.:491:491:0:0%:280,211,0,0 -Example1_ref 12306 . C . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:282,202,0,0 0/0:.:484:484:0:0%:282,202,0,0 -Example1_ref 12307 . C . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:275,209,0,0 0/0:.:484:484:0:0%:275,209,0,0 -Example1_ref 12308 . G . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:276,210,0,0 0/0:.:486:486:0:0%:276,210,0,0 -Example1_ref 12309 . C . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:276,203,0,0 0/0:.:479:479:0:0%:276,203,0,0 -Example1_ref 12310 . A C . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:272,212,1,0 0/0:.:485:484:1:0.21%:272,212,1,0 -Example1_ref 12311 . A . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:266,213,0,0 0/0:.:479:479:0:0%:266,213,0,0 -Example1_ref 12312 . T . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:273,213,0,0 0/0:.:486:486:0:0%:273,213,0,0 -Example1_ref 12313 . A G . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:273,219,0,1 0/0:.:493:492:1:0.2%:273,219,0,1 -Example1_ref 12314 . A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:271,220,0,0 0/0:.:491:491:0:0%:271,220,0,0 -Example1_ref 12315 . G . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:275,217,0,0 0/0:.:492:492:0:0%:275,217,0,0 -Example1_ref 12316 . A AG . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:274,216,0,1 0/0:.:491:490:1:0.2%:274,216,0,1 -Example1_ref 12317 . A T . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:273,218,1,0 0/0:.:492:491:1:0.2%:273,218,1,0 -Example1_ref 12318 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:0:0%:273,216,0,0 0/0:.:490:489:0:0%:273,216,0,0 -Example1_ref 12319 . A . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:0:0%:267,215,0,0 0/0:.:483:482:0:0%:267,215,0,0 -Example1_ref 12320 . G . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:0:0%:271,218,0,0 0/0:.:490:489:0:0%:271,218,0,0 -Example1_ref 12321 . C A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:482:1:0.21%:272,210,0,1 0/0:.:485:482:1:0.21%:272,210,0,1 -Example1_ref 12322 . A G . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:270,218,0,1 0/0:.:490:488:1:0.2%:270,218,0,1 -Example1_ref 12323 . A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:0:0%:268,224,0,0 0/0:.:493:492:0:0%:268,224,0,0 -Example1_ref 12324 . T G . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:487:1:0.2%:269,218,0,1 0/0:.:490:487:1:0.2%:269,218,0,1 -Example1_ref 12325 . G . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:288,231,0,0 0/0:.:519:519:0:0%:288,231,0,0 -Example1_ref 12326 . A . PASS DP=1074;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:537:0:0%:301,236,0,0 0/0:.:537:537:0:0%:301,236,0,0 -Example1_ref 12327 . T . PASS DP=1084;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:542:542:0:0%:309,233,0,0 0/0:.:542:542:0:0%:309,233,0,0 -Example1_ref 12328 . A ACTGTCTCT . PASS DP=1086;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:543:542:1:0.18%:308,234,1,0 0/0:.:543:542:1:0.18%:308,234,1,0 -Example1_ref 12329 . T G . PASS DP=1074;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:535:1:0.19%:306,229,1,0 0/0:.:537:535:1:0.19%:306,229,1,0 -Example1_ref 12330 . A G . PASS DP=1098;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:549:548:1:0.18%:312,236,1,0 0/0:.:549:548:1:0.18%:312,236,1,0 -Example1_ref 12331 . T . PASS DP=1100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:550:550:0:0%:315,235,0,0 0/0:.:550:550:0:0%:315,235,0,0 -Example1_ref 12332 . A T . PASS DP=1118;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:559:558:1:0.18%:312,246,0,1 0/0:.:559:558:1:0.18%:312,246,0,1 -Example1_ref 12333 . C CCTGTCTCTT . PASS DP=1090;SS=0;SSC=0;GPV=1E0;SPV=6.8785E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:545:542:2:0.37%:296,246,2,0 0/0:.:545:542:2:0.37%:296,246,2,0 -Example1_ref 12334 . A ACTGTC . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:485:2:0.41%:274,211,2,0 0/0:.:488:485:2:0.41%:274,211,2,0 -Example1_ref 12335 . T . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:270,209,0,0 0/0:.:479:479:0:0%:270,209,0,0 -Example1_ref 12336 . G A . PASS DP=936;SS=0;SSC=0;GPV=1E0;SPV=6.879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:466:2:0.43%:259,207,2,0 0/0:.:468:466:2:0.43%:259,207,2,0 -Example1_ref 12337 . G T . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:1:0.22%:255,203,0,1 0/0:.:459:458:1:0.22%:255,203,0,1 -Example1_ref 12338 . G . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:250,208,0,0 0/0:.:458:458:0:0%:250,208,0,0 -Example1_ref 12339 . C . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:262,197,0,0 0/0:.:459:459:0:0%:262,197,0,0 -Example1_ref 12340 . A AT . PASS DP=942;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:470:1:0.21%:262,208,1,0 0/0:.:471:470:1:0.21%:262,208,1,0 -Example1_ref 12341 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:249,201,0,0 0/0:.:450:450:0:0%:249,201,0,0 -Example1_ref 12342 . T C . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:461:1:0.22%:244,217,1,0 0/0:.:462:461:1:0.22%:244,217,1,0 -Example1_ref 12343 . T . PASS DP=936;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:247,221,0,0 0/0:.:468:468:0:0%:247,221,0,0 -Example1_ref 12344 . G . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:252,225,0,0 0/0:.:477:477:0:0%:252,225,0,0 -Example1_ref 12345 . G T . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:491:2:0.41%:264,227,2,0 0/0:.:493:491:2:0.41%:264,227,2,0 -Example1_ref 12346 . T . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:272,228,0,0 0/0:.:500:500:0:0%:272,228,0,0 -Example1_ref 12347 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:268,232,0,0 0/0:.:500:500:0:0%:268,232,0,0 -Example1_ref 12348 . A . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:268,231,0,0 0/0:.:499:499:0:0%:268,231,0,0 -Example1_ref 12349 . T . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:269,229,0,0 0/0:.:498:498:0:0%:269,229,0,0 -Example1_ref 12350 . G . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:263,230,0,0 0/0:.:493:493:0:0%:263,230,0,0 -Example1_ref 12351 . AT A . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:1:0.2%:264,231,1,0 0/0:.:496:495:1:0.2%:264,231,1,0 -Example1_ref 12352 . T . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:0:0%:267,228,0,0 0/0:.:496:495:0:0%:267,228,0,0 -Example1_ref 12353 . G . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:265,231,0,0 0/0:.:496:496:0:0%:265,231,0,0 -Example1_ref 12354 . A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:270,236,0,0 0/0:.:506:506:0:0%:270,236,0,0 -Example1_ref 12355 . G . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:258,234,0,0 0/0:.:492:492:0:0%:258,234,0,0 -Example1_ref 12356 . A . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:262,242,0,0 0/0:.:504:504:0:0%:262,242,0,0 -Example1_ref 12357 . T G . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:1:0.2%:263,240,0,1 0/0:.:504:503:1:0.2%:263,240,0,1 -Example1_ref 12358 . A . PASS DP=1036;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:518:0:0%:277,241,0,0 0/0:.:518:518:0:0%:277,241,0,0 -Example1_ref 12359 . T . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:277,234,0,0 0/0:.:511:511:0:0%:277,234,0,0 -Example1_ref 12360 . C T . PASS DP=1040;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:519:1:0.19%:281,238,0,1 0/0:.:520:519:1:0.19%:281,238,0,1 -Example1_ref 12361 . T . PASS DP=1066;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:533:0:0%:281,252,0,0 0/0:.:533:533:0:0%:281,252,0,0 -Example1_ref 12362 . T . PASS DP=1066;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:533:0:0%:280,253,0,0 0/0:.:533:533:0:0%:280,253,0,0 -Example1_ref 12363 . G . PASS DP=1044;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:275,247,0,0 0/0:.:522:522:0:0%:275,247,0,0 -Example1_ref 12364 . G . PASS DP=1058;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:529:528:0:0%:274,254,0,0 0/0:.:529:528:0:0%:274,254,0,0 -Example1_ref 12365 . A T . PASS DP=1068;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:533:1:0.19%:277,256,1,0 0/0:.:534:533:1:0.19%:277,256,1,0 -Example1_ref 12366 . T . PASS DP=1080;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:540:540:0:0%:285,255,0,0 0/0:.:540:540:0:0%:285,255,0,0 -Example1_ref 12367 . G A . PASS DP=1040;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:519:1:0.19%:282,237,0,1 0/0:.:520:519:1:0.19%:282,237,0,1 -Example1_ref 12368 . G T . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=6.8786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:516:2:0.39%:272,244,2,0 0/0:.:519:516:2:0.39%:272,244,2,0 -Example1_ref 12369 . A . PASS DP=1050;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:279,246,0,0 0/0:.:525:525:0:0%:279,246,0,0 -Example1_ref 12370 . A . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:270,244,0,0 0/0:.:514:514:0:0%:270,244,0,0 -Example1_ref 12371 . G GAT . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:261,239,1,0 0/0:.:501:500:1:0.2%:261,239,1,0 -Example1_ref 12372 . C . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:264,240,0,0 0/0:.:504:504:0:0%:264,240,0,0 -Example1_ref 12373 . C CTATT . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:256,241,1,0 0/0:.:498:497:1:0.2%:256,241,1,0 -Example1_ref 12374 . T . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:263,248,0,0 0/0:.:511:511:0:0%:263,248,0,0 -Example1_ref 12375 . C . PASS DP=1018;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:509:0:0%:264,245,0,0 0/0:.:509:509:0:0%:264,245,0,0 -Example1_ref 12376 . A . PASS DP=1036;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:518:0:0%:266,252,0,0 0/0:.:518:518:0:0%:266,252,0,0 -Example1_ref 12377 . C . PASS DP=1048;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:524:524:0:0%:274,250,0,0 0/0:.:524:524:0:0%:274,250,0,0 -Example1_ref 12378 . A . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:523:0:0%:274,249,0,0 0/0:.:523:523:0:0%:274,249,0,0 -Example1_ref 12379 . A . PASS DP=1056;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:528:0:0%:272,256,0,0 0/0:.:528:528:0:0%:272,256,0,0 -Example1_ref 12380 . A . PASS DP=1044;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:267,255,0,0 0/0:.:522:522:0:0%:267,255,0,0 -Example1_ref 12381 . T . PASS DP=1044;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:268,254,0,0 0/0:.:522:522:0:0%:268,254,0,0 -Example1_ref 12382 . A . PASS DP=1034;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:270,247,0,0 0/0:.:517:517:0:0%:270,247,0,0 -Example1_ref 12383 . G . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:273,246,0,0 0/0:.:519:519:0:0%:273,246,0,0 -Example1_ref 12384 . C A . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:513:1:0.19%:272,241,1,0 0/0:.:514:513:1:0.19%:272,241,1,0 -Example1_ref 12385 . A ACCTGTCT . PASS DP=1042;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:521:520:1:0.19%:273,247,1,0 0/0:.:521:520:1:0.19%:273,247,1,0 -Example1_ref 12386 . C . PASS DP=1032;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:271,245,0,0 0/0:.:516:516:0:0%:271,245,0,0 -Example1_ref 12387 . A . PASS DP=1032;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:274,242,0,0 0/0:.:516:516:0:0%:274,242,0,0 -Example1_ref 12388 . A . PASS DP=1024;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:271,241,0,0 0/0:.:512:512:0:0%:271,241,0,0 -Example1_ref 12389 . A . PASS DP=1036;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:518:0:0%:272,246,0,0 0/0:.:518:518:0:0%:272,246,0,0 -Example1_ref 12390 . C . PASS DP=1024;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:271,241,0,0 0/0:.:512:512:0:0%:271,241,0,0 -Example1_ref 12391 . A . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:269,245,0,0 0/0:.:514:514:0:0%:269,245,0,0 -Example1_ref 12392 . C T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:267,233,0,1 0/0:.:501:500:1:0.2%:267,233,0,1 -Example1_ref 12393 . G . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:268,235,0,0 0/0:.:503:503:0:0%:268,235,0,0 -Example1_ref 12394 . T . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:267,237,0,0 0/0:.:504:504:0:0%:267,237,0,0 -Example1_ref 12395 . G T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:483:2:0.41%:246,237,2,0 0/0:.:485:483:2:0.41%:246,237,2,0 -Example1_ref 12396 . C . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:263,238,0,0 0/0:.:501:501:0:0%:263,238,0,0 -Example1_ref 12397 . A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:266,240,0,0 0/0:.:506:506:0:0%:266,240,0,0 -Example1_ref 12398 . A . PASS DP=1018;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:509:0:0%:267,242,0,0 0/0:.:509:509:0:0%:267,242,0,0 -Example1_ref 12399 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:260,242,0,0 0/0:.:502:502:0:0%:260,242,0,0 -Example1_ref 12400 . T . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:268,234,0,0 0/0:.:502:502:0:0%:268,234,0,0 -Example1_ref 12401 . T . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:262,241,0,0 0/0:.:503:503:0:0%:262,241,0,0 -Example1_ref 12402 . T . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:264,239,0,0 0/0:.:503:503:0:0%:264,239,0,0 -Example1_ref 12403 . T . PASS DP=1014;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:266,241,0,0 0/0:.:507:507:0:0%:266,241,0,0 -Example1_ref 12404 . A . PASS DP=1014;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:260,247,0,0 0/0:.:507:507:0:0%:260,247,0,0 -Example1_ref 12405 . C . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:253,245,0,0 0/0:.:498:498:0:0%:253,245,0,0 -Example1_ref 12406 . A . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:250,245,0,0 0/0:.:495:495:0:0%:250,245,0,0 -Example1_ref 12407 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:245,239,0,0 0/0:.:484:484:0:0%:245,239,0,0 -Example1_ref 12408 . T . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:245,243,0,0 0/0:.:488:488:0:0%:245,243,0,0 -Example1_ref 12409 . A . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:247,243,0,0 0/0:.:490:490:0:0%:247,243,0,0 -Example1_ref 12410 . G T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:249,240,0,1 0/0:.:490:489:1:0.2%:249,240,0,1 -Example1_ref 12411 . A . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:242,240,0,0 0/0:.:482:482:0:0%:242,240,0,0 -Example1_ref 12412 . T C . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:250,242,0,1 0/0:.:493:492:1:0.2%:250,242,0,1 -Example1_ref 12413 . A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:246,239,0,0 0/0:.:485:485:0:0%:246,239,0,0 -Example1_ref 12414 . A G . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:250,237,0,1 0/0:.:488:487:1:0.2%:250,237,0,1 -Example1_ref 12415 . T . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:248,235,0,0 0/0:.:483:483:0:0%:248,235,0,0 -Example1_ref 12416 . C . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:250,236,0,0 0/0:.:486:486:0:0%:250,236,0,0 -Example1_ref 12417 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:250,234,0,0 0/0:.:484:484:0:0%:250,234,0,0 -Example1_ref 12418 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:252,238,0,0 0/0:.:490:490:0:0%:252,238,0,0 -Example1_ref 12419 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:247,247,0,0 0/0:.:494:494:0:0%:247,247,0,0 -Example1_ref 12420 . A . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:247,248,0,0 0/0:.:495:495:0:0%:247,248,0,0 -Example1_ref 12421 . A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:242,245,0,0 0/0:.:487:487:0:0%:242,245,0,0 -Example1_ref 12422 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:248,246,0,0 0/0:.:494:494:0:0%:248,246,0,0 -Example1_ref 12423 . T . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:264,250,0,0 0/0:.:514:514:0:0%:264,250,0,0 -Example1_ref 12424 . T . PASS DP=1010;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:505:0:0%:256,249,0,0 0/0:.:505:505:0:0%:256,249,0,0 -Example1_ref 12425 . C A . PASS DP=1014;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:506:1:0.2%:259,247,0,1 0/0:.:507:506:1:0.2%:259,247,0,1 -Example1_ref 12426 . T C . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:509:1:0.2%:259,250,1,0 0/0:.:510:509:1:0.2%:259,250,1,0 -Example1_ref 12427 . A . PASS DP=1016;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:259,249,0,0 0/0:.:508:508:0:0%:259,249,0,0 -Example1_ref 12428 . A . PASS DP=1032;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:261,255,0,0 0/0:.:516:516:0:0%:261,255,0,0 -Example1_ref 12429 . C T . PASS DP=1024;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:511:1:0.2%:260,251,1,0 0/0:.:512:511:1:0.2%:260,251,1,0 -Example1_ref 12430 . A . PASS DP=1026;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:513:0:0%:258,255,0,0 0/0:.:513:513:0:0%:258,255,0,0 -Example1_ref 12431 . C . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:261,250,0,0 0/0:.:511:511:0:0%:261,250,0,0 -Example1_ref 12432 . C . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:256,242,0,0 0/0:.:498:498:0:0%:256,242,0,0 -Example1_ref 12433 . G A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:254,243,0,1 0/0:.:498:497:1:0.2%:254,243,0,1 -Example1_ref 12434 . G . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:253,250,0,0 0/0:.:503:503:0:0%:253,250,0,0 -Example1_ref 12435 . T . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:268,251,0,0 0/0:.:519:519:0:0%:268,251,0,0 -Example1_ref 12436 . A . PASS DP=1034;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:265,252,0,0 0/0:.:517:517:0:0%:265,252,0,0 -Example1_ref 12437 . G . PASS DP=1024;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:260,252,0,0 0/0:.:512:512:0:0%:260,252,0,0 -Example1_ref 12438 . C . PASS DP=1016;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:262,246,0,0 0/0:.:508:508:0:0%:262,246,0,0 -Example1_ref 12439 . T . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:259,252,0,0 0/0:.:511:511:0:0%:259,252,0,0 -Example1_ref 12440 . A C . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:510:1:0.2%:258,252,1,0 0/0:.:511:510:1:0.2%:258,252,1,0 -Example1_ref 12441 . C . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:258,246,0,0 0/0:.:504:504:0:0%:258,246,0,0 -Example1_ref 12442 . A T . PASS DP=1026;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:512:1:0.19%:258,254,1,0 0/0:.:513:512:1:0.19%:258,254,1,0 -Example1_ref 12443 . T . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:246,246,0,0 0/0:.:492:492:0:0%:246,246,0,0 -Example1_ref 12444 . C . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:261,243,0,0 0/0:.:504:504:0:0%:261,243,0,0 -Example1_ref 12445 . G . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:251,248,0,0 0/0:.:499:499:0:0%:251,248,0,0 -Example1_ref 12446 . A . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:253,250,0,0 0/0:.:503:503:0:0%:253,250,0,0 -Example1_ref 12447 . C . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:256,245,0,0 0/0:.:501:501:0:0%:256,245,0,0 -Example1_ref 12448 . A T . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:502:1:0.2%:255,247,0,1 0/0:.:503:502:1:0.2%:255,247,0,1 -Example1_ref 12449 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:256,246,0,0 0/0:.:502:502:0:0%:256,246,0,0 -Example1_ref 12450 . A . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:254,245,0,0 0/0:.:499:499:0:0%:254,245,0,0 -Example1_ref 12451 . T . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:258,240,0,0 0/0:.:498:498:0:0%:258,240,0,0 -Example1_ref 12452 . T . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:249,242,0,0 0/0:.:491:491:0:0%:249,242,0,0 -Example1_ref 12453 . T . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:254,249,0,0 0/0:.:503:503:0:0%:254,249,0,0 -Example1_ref 12454 . A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:505:0:0%:252,253,0,0 0/0:.:506:505:0:0%:252,253,0,0 -Example1_ref 12455 . T . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:246,247,0,0 0/0:.:493:493:0:0%:246,247,0,0 -Example1_ref 12456 . C . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:240,250,0,0 0/0:.:490:490:0:0%:240,250,0,0 -Example1_ref 12457 . A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:0:0%:245,252,0,0 0/0:.:498:497:0:0%:245,252,0,0 -Example1_ref 12458 . C . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:0:0%:240,246,0,0 0/0:.:487:486:0:0%:240,246,0,0 -Example1_ref 12459 . A . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:238,251,0,0 0/0:.:489:489:0:0%:238,251,0,0 -Example1_ref 12460 . C . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:241,250,0,0 0/0:.:491:491:0:0%:241,250,0,0 -Example1_ref 12461 . A AG . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:240,250,0,1 0/0:.:491:490:1:0.2%:240,250,0,1 -Example1_ref 12462 . G . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:246,252,0,0 0/0:.:498:498:0:0%:246,252,0,0 -Example1_ref 12463 . A . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:240,256,0,0 0/0:.:496:496:0:0%:240,256,0,0 -Example1_ref 12464 . T . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:259,255,0,0 0/0:.:514:514:0:0%:259,255,0,0 -Example1_ref 12465 . T . PASS DP=1032;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:257,259,0,0 0/0:.:516:516:0:0%:257,259,0,0 -Example1_ref 12466 . A . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:263,256,0,0 0/0:.:519:519:0:0%:263,256,0,0 -Example1_ref 12467 . A . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:256,255,0,0 0/0:.:511:511:0:0%:256,255,0,0 -Example1_ref 12468 . A . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:253,261,0,0 0/0:.:514:514:0:0%:253,261,0,0 -Example1_ref 12469 . G A . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:508:1:0.2%:252,256,0,1 0/0:.:510:508:1:0.2%:252,256,0,1 -Example1_ref 12470 . G T . PASS DP=1010;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:504:1:0.2%:247,257,1,0 0/0:.:505:504:1:0.2%:247,257,1,0 -Example1_ref 12471 . A G . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:476:1:0.21%:245,231,1,0 0/0:.:477:476:1:0.21%:245,231,1,0 -Example1_ref 12472 . T . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:260,231,0,0 0/0:.:491:491:0:0%:260,231,0,0 -Example1_ref 12473 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:255,233,0,0 0/0:.:488:488:0:0%:255,233,0,0 -Example1_ref 12474 . C A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:262,229,1,0 0/0:.:492:491:1:0.2%:262,229,1,0 -Example1_ref 12475 . T . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:260,228,0,0 0/0:.:488:488:0:0%:260,228,0,0 -Example1_ref 12476 . G . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:246,227,0,0 0/0:.:473:473:0:0%:246,227,0,0 -Example1_ref 12477 . C . PASS DP=948;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:474:0:0%:256,218,0,0 0/0:.:474:474:0:0%:256,218,0,0 -Example1_ref 12478 . A . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:253,227,0,0 0/0:.:480:480:0:0%:253,227,0,0 -Example1_ref 12479 . A . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:259,229,0,0 0/0:.:488:488:0:0%:259,229,0,0 -Example1_ref 12480 . C CCTG . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:476:1:0.21%:258,218,1,0 0/0:.:477:476:1:0.21%:258,218,1,0 -Example1_ref 12481 . T . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:474:0:0%:257,217,0,0 0/0:.:475:474:0:0%:257,217,0,0 -Example1_ref 12482 . C . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:483:0:0%:256,227,0,0 0/0:.:484:483:0:0%:256,227,0,0 -Example1_ref 12483 . A . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:261,228,0,0 0/0:.:489:489:0:0%:261,228,0,0 -Example1_ref 12484 . A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:261,232,0,0 0/0:.:493:493:0:0%:261,232,0,0 -Example1_ref 12485 . A . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:258,239,0,0 0/0:.:497:497:0:0%:258,239,0,0 -Example1_ref 12486 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:254,241,0,0 0/0:.:495:495:0:0%:254,241,0,0 -Example1_ref 12487 . G . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:252,242,0,0 0/0:.:494:494:0:0%:252,242,0,0 -Example1_ref 12488 . A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:253,240,0,0 0/0:.:493:493:0:0%:253,240,0,0 -Example1_ref 12489 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:254,246,0,0 0/0:.:500:500:0:0%:254,246,0,0 -Example1_ref 12490 . G . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:252,243,0,0 0/0:.:495:495:0:0%:252,243,0,0 -Example1_ref 12491 . T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:0:0%:258,240,0,0 0/0:.:499:498:0:0%:258,240,0,0 -Example1_ref 12492 . T . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:499:0:0%:262,237,0,0 0/0:.:500:499:0:0%:262,237,0,0 -Example1_ref 12493 . C A . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=6.8787E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:502:2:0.4%:262,240,1,1 0/0:.:504:502:2:0.4%:262,240,1,1 -Example1_ref 12494 . T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:263,238,0,0 0/0:.:501:501:0:0%:263,238,0,0 -Example1_ref 12495 . C A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:1:0.2%:259,242,0,1 0/0:.:502:501:1:0.2%:259,242,0,1 -Example1_ref 12496 . C . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:257,247,0,0 0/0:.:504:504:0:0%:257,247,0,0 -Example1_ref 12497 . A G . PASS DP=1036;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:517:1:0.19%:268,249,0,1 0/0:.:518:517:1:0.19%:268,249,0,1 -Example1_ref 12498 . G . PASS DP=1016;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:260,248,0,0 0/0:.:508:508:0:0%:260,248,0,0 -Example1_ref 12499 . C . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:262,244,0,0 0/0:.:506:506:0:0%:262,244,0,0 -Example1_ref 12500 . A . PASS DP=1044;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:269,253,0,0 0/0:.:522:522:0:0%:269,253,0,0 -Example1_ref 12501 . C . PASS DP=1034;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:515:0:0%:266,249,0,0 0/0:.:517:515:0:0%:266,249,0,0 -Example1_ref 12502 . ATCGT A . PASS DP=1016;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:507:1:0.2%:263,244,0,1 0/0:.:508:507:1:0.2%:263,244,0,1 -Example1_ref 12503 . T . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:258,244,0,0 0/0:.:502:502:0:0%:258,244,0,0 -Example1_ref 12504 . C . PASS DP=1062;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:531:0:0%:267,264,0,0 0/0:.:531:531:0:0%:267,264,0,0 -Example1_ref 12505 . G . PASS DP=1072;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:536:536:0:0%:266,270,0,0 0/0:.:536:536:0:0%:266,270,0,0 -Example1_ref 12506 . T . PASS DP=1066;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:531:0:0%:265,266,0,0 0/0:.:533:531:0:0%:265,266,0,0 -Example1_ref 12507 . T . PASS DP=1064;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:532:531:0:0%:262,269,0,0 0/0:.:532:531:0:0%:262,269,0,0 -Example1_ref 12508 . G A . PASS DP=1050;SS=0;SSC=0;GPV=1E0;SPV=6.8786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:523:2:0.38%:253,270,1,1 0/0:.:525:523:2:0.38%:253,270,1,1 -Example1_ref 12509 . A G . PASS DP=1064;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:532:531:1:0.19%:257,274,1,0 0/0:.:532:531:1:0.19%:257,274,1,0 -Example1_ref 12510 . T C . PASS DP=1052;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:526:525:1:0.19%:261,264,1,0 0/0:.:526:525:1:0.19%:261,264,1,0 -Example1_ref 12511 . C . PASS DP=1058;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:529:528:0:0%:256,272,0,0 0/0:.:529:528:0:0%:256,272,0,0 -Example1_ref 12512 . A . PASS DP=1044;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:521:0:0%:255,266,0,0 0/0:.:522:521:0:0%:255,266,0,0 -Example1_ref 12513 . G GC . PASS DP=1030;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:515:514:1:0.19%:250,264,1,0 0/0:.:515:514:1:0.19%:250,264,1,0 -Example1_ref 12514 . A . PASS DP=1042;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:521:521:0:0%:254,267,0,0 0/0:.:521:521:0:0%:254,267,0,0 -Example1_ref 12515 . G C . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:488:1:0.2%:219,269,1,0 0/0:.:491:488:1:0.2%:219,269,1,0 -Example1_ref 12516 . T . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:0:0%:224,262,0,0 0/0:.:487:486:0:0%:224,262,0,0 -Example1_ref 12517 . C . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:0:0%:221,265,0,0 0/0:.:487:486:0:0%:221,265,0,0 -Example1_ref 12518 . A . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:220,270,0,0 0/0:.:490:490:0:0%:220,270,0,0 -Example1_ref 12519 . G T . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:216,275,1,0 0/0:.:492:491:1:0.2%:216,275,1,0 -Example1_ref 12520 . T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:222,279,0,0 0/0:.:501:501:0:0%:222,279,0,0 -Example1_ref 12521 . A . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:0:0%:222,274,0,0 0/0:.:497:496:0:0%:222,274,0,0 -Example1_ref 12522 . G GCTGTCTCTT . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:475:2:0.42%:210,265,2,0 0/0:.:477:475:2:0.42%:210,265,2,0 -Example1_ref 12523 . A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:219,268,0,0 0/0:.:487:487:0:0%:219,268,0,0 -Example1_ref 12524 . T C . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:223,266,0,1 0/0:.:490:489:1:0.2%:223,266,0,1 -Example1_ref 12525 . T G . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:485:2:0.41%:220,265,0,2 0/0:.:487:485:2:0.41%:220,265,0,2 -Example1_ref 12526 . C A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:221,263,1,0 0/0:.:485:484:1:0.21%:221,263,1,0 -Example1_ref 12527 . A . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:228,275,0,0 0/0:.:503:503:0:0%:228,275,0,0 -Example1_ref 12528 . T C . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:230,270,1,0 0/0:.:501:500:1:0.2%:230,270,1,0 -Example1_ref 12529 . A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:505:0:0%:231,274,0,0 0/0:.:506:505:0:0%:231,274,0,0 -Example1_ref 12530 . A . PASS DP=1006;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:231,272,0,0 0/0:.:503:503:0:0%:231,272,0,0 -Example1_ref 12531 . C T . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:488:1:0.2%:225,263,1,0 0/0:.:489:488:1:0.2%:225,263,1,0 -Example1_ref 12532 . A . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:0:0%:222,250,0,0 0/0:.:473:472:0:0%:222,250,0,0 -Example1_ref 12533 . A . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:0:0%:220,252,0,0 0/0:.:473:472:0:0%:220,252,0,0 -Example1_ref 12534 . T . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:0:0%:220,238,0,0 0/0:.:459:458:0:0%:220,238,0,0 -Example1_ref 12535 . G A . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:464:1:0.22%:217,247,1,0 0/0:.:466:464:1:0.22%:217,247,1,0 -Example1_ref 12536 . T . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:223,234,0,0 0/0:.:457:457:0:0%:223,234,0,0 -Example1_ref 12537 . C A . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:219,221,0,1 0/0:.:441:440:1:0.23%:219,221,0,1 -Example1_ref 12538 . C . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:216,239,0,0 0/0:.:455:455:0:0%:216,239,0,0 -Example1_ref 12539 . A . PASS DP=940;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:470:0:0%:221,249,0,0 0/0:.:470:470:0:0%:221,249,0,0 -Example1_ref 12540 . A . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:223,250,0,0 0/0:.:473:473:0:0%:223,250,0,0 -Example1_ref 12541 . T . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:228,250,0,0 0/0:.:478:478:0:0%:228,250,0,0 -Example1_ref 12542 . G T . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:480:1:0.21%:228,252,1,0 0/0:.:481:480:1:0.21%:228,252,1,0 -Example1_ref 12543 . A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:233,253,0,0 0/0:.:486:486:0:0%:233,253,0,0 -Example1_ref 12544 . T . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:466:0:0%:228,238,0,0 0/0:.:466:466:0:0%:228,238,0,0 -Example1_ref 12545 . A G . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:460:1:0.22%:223,237,1,0 0/0:.:461:460:1:0.22%:223,237,1,0 -Example1_ref 12546 . A . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:465:0:0%:224,241,0,0 0/0:.:466:465:0:0%:224,241,0,0 -Example1_ref 12547 . C . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:220,234,0,0 0/0:.:454:454:0:0%:220,234,0,0 -Example1_ref 12548 . A G . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:1:0.22%:213,244,1,0 0/0:.:459:457:1:0.22%:213,244,1,0 -Example1_ref 12549 . T . PASS DP=900;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:214,236,0,0 0/0:.:450:450:0:0%:214,236,0,0 -Example1_ref 12550 . G . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:214,244,0,0 0/0:.:458:458:0:0%:214,244,0,0 -Example1_ref 12551 . T . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:215,229,0,0 0/0:.:444:444:0:0%:215,229,0,0 -Example1_ref 12552 . C A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:432:1:0.23%:211,221,0,1 0/0:.:433:432:1:0.23%:211,221,0,1 -Example1_ref 12553 . T . PASS DP=896;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:213,235,0,0 0/0:.:448:448:0:0%:213,235,0,0 -Example1_ref 12554 . A . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:209,238,0,0 0/0:.:447:447:0:0%:209,238,0,0 -Example1_ref 12555 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:212,228,0,0 0/0:.:440:440:0:0%:212,228,0,0 -Example1_ref 12556 . C . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:0:0%:212,230,0,0 0/0:.:443:442:0:0%:212,230,0,0 -Example1_ref 12557 . A G . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:211,235,1,0 0/0:.:447:446:1:0.22%:211,235,1,0 -Example1_ref 12558 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:206,234,0,0 0/0:.:440:440:0:0%:206,234,0,0 -Example1_ref 12559 . G . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:206,231,0,0 0/0:.:437:437:0:0%:206,231,0,0 -Example1_ref 12560 . G . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:201,233,0,0 0/0:.:434:434:0:0%:201,233,0,0 -Example1_ref 12561 . A G . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:421:1:0.24%:196,225,0,1 0/0:.:422:421:1:0.24%:196,225,0,1 -Example1_ref 12562 . A . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:205,227,0,0 0/0:.:432:432:0:0%:205,227,0,0 -Example1_ref 12563 . G . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:200,218,0,0 0/0:.:418:418:0:0%:200,218,0,0 -Example1_ref 12564 . C . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:426:0:0%:203,223,0,0 0/0:.:426:426:0:0%:203,223,0,0 -Example1_ref 12565 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:204,236,0,0 0/0:.:440:440:0:0%:204,236,0,0 -Example1_ref 12566 . A . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:442:0:0%:205,237,0,0 0/0:.:444:442:0:0%:205,237,0,0 -Example1_ref 12567 . A . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:0:0%:198,242,0,0 0/0:.:441:440:0:0%:198,242,0,0 -Example1_ref 12568 . C CA . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=6.8793E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:433:2:0.46%:200,233,0,2 0/0:.:437:433:2:0.46%:200,233,0,2 -Example1_ref 12569 . G . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:199,243,0,0 0/0:.:442:442:0:0%:199,243,0,0 -Example1_ref 12570 . A . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:197,238,0,0 0/0:.:435:435:0:0%:197,238,0,0 -Example1_ref 12571 . A T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:194,240,0,1 0/0:.:435:434:1:0.23%:194,240,0,1 -Example1_ref 12572 . A . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:200,239,0,0 0/0:.:439:439:0:0%:200,239,0,0 -Example1_ref 12573 . C A . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:1:0.24%:194,225,0,1 0/0:.:420:419:1:0.24%:194,225,0,1 -Example1_ref 12574 . C . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:196,239,0,0 0/0:.:435:435:0:0%:196,239,0,0 -Example1_ref 12575 . A . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:198,240,0,0 0/0:.:438:438:0:0%:198,240,0,0 -Example1_ref 12576 . A . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:198,240,0,0 0/0:.:438:438:0:0%:198,240,0,0 -Example1_ref 12577 . A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:193,243,0,0 0/0:.:436:436:0:0%:193,243,0,0 -Example1_ref 12578 . G A . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:436:1:0.23%:194,242,0,1 0/0:.:437:436:1:0.23%:194,242,0,1 -Example1_ref 12579 . A T . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:429:1:0.23%:192,237,1,0 0/0:.:430:429:1:0.23%:192,237,1,0 -Example1_ref 12580 . T . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:194,234,0,0 0/0:.:428:428:0:0%:194,234,0,0 -Example1_ref 12581 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:197,243,0,0 0/0:.:440:440:0:0%:197,243,0,0 -Example1_ref 12582 . C . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:193,229,0,0 0/0:.:422:422:0:0%:193,229,0,0 -Example1_ref 12583 . C . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:182,236,0,0 0/0:.:418:418:0:0%:182,236,0,0 -Example1_ref 12584 . A G . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:432:1:0.23%:192,240,1,0 0/0:.:433:432:1:0.23%:192,240,1,0 -Example1_ref 12585 . A . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:192,235,0,0 0/0:.:427:427:0:0%:192,235,0,0 -Example1_ref 12586 . T . PASS DP=844;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:194,228,0,0 0/0:.:422:422:0:0%:194,228,0,0 -Example1_ref 12587 . C . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:192,235,0,0 0/0:.:427:427:0:0%:192,235,0,0 -Example1_ref 12588 . T G . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:195,230,0,1 0/0:.:426:425:1:0.23%:195,230,0,1 -Example1_ref 12589 . T . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:194,234,0,0 0/0:.:428:428:0:0%:194,234,0,0 -Example1_ref 12590 . A AT . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:424:1:0.24%:187,237,0,1 0/0:.:426:424:1:0.24%:187,237,0,1 -Example1_ref 12591 . T . PASS DP=824;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:187,225,0,0 0/0:.:412:412:0:0%:187,225,0,0 -Example1_ref 12592 . T . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:188,228,0,0 0/0:.:416:416:0:0%:188,228,0,0 -Example1_ref 12593 . T . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:186,228,0,0 0/0:.:414:414:0:0%:186,228,0,0 -Example1_ref 12594 . A . PASS DP=824;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:186,226,0,0 0/0:.:412:412:0:0%:186,226,0,0 -Example1_ref 12595 . T A . PASS DP=808;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:403:1:0.25%:182,221,1,0 0/0:.:404:403:1:0.25%:182,221,1,0 -Example1_ref 12596 . C . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:185,225,0,0 0/0:.:410:410:0:0%:185,225,0,0 -Example1_ref 12597 . A . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:184,224,0,0 0/0:.:408:408:0:0%:184,224,0,0 -Example1_ref 12598 . A . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:182,228,0,0 0/0:.:410:410:0:0%:182,228,0,0 -Example1_ref 12599 . C . PASS DP=802;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:401:0:0%:179,222,0,0 0/0:.:401:401:0:0%:179,222,0,0 -Example1_ref 12600 . A . PASS DP=798;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:180,219,0,0 0/0:.:399:399:0:0%:180,219,0,0 -Example1_ref 12601 . A . PASS DP=786;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:176,217,0,0 0/0:.:393:393:0:0%:176,217,0,0 -Example1_ref 12602 . A . PASS DP=786;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:178,215,0,0 0/0:.:393:393:0:0%:178,215,0,0 -Example1_ref 12603 . T . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:178,211,0,0 0/0:.:389:389:0:0%:178,211,0,0 -Example1_ref 12604 . C A . PASS DP=790;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:395:394:1:0.25%:177,217,0,1 0/0:.:395:394:1:0.25%:177,217,0,1 -Example1_ref 12605 . A . PASS DP=796;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:398:0:0%:175,223,0,0 0/0:.:398:398:0:0%:175,223,0,0 -Example1_ref 12606 . T . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:184,221,0,0 0/0:.:405:405:0:0%:184,221,0,0 -Example1_ref 12607 . G . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:180,222,0,0 0/0:.:402:402:0:0%:180,222,0,0 -Example1_ref 12608 . T . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:181,219,0,0 0/0:.:400:400:0:0%:181,219,0,0 -Example1_ref 12609 . T . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:188,217,0,0 0/0:.:405:405:0:0%:188,217,0,0 -Example1_ref 12610 . A G . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:401:1:0.25%:185,216,0,1 0/0:.:402:401:1:0.25%:185,216,0,1 -Example1_ref 12611 . A . PASS DP=806;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:403:0:0%:184,219,0,0 0/0:.:403:403:0:0%:184,219,0,0 -Example1_ref 12612 . C . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:0:0%:165,214,0,0 0/0:.:380:379:0:0%:165,214,0,0 -Example1_ref 12613 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:169,214,0,0 0/0:.:383:383:0:0%:169,214,0,0 -Example1_ref 12614 . G . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:165,216,0,0 0/0:.:381:381:0:0%:165,216,0,0 -Example1_ref 12615 . G T . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=6.88E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:377:2:0.53%:159,218,2,0 0/0:.:379:377:2:0.53%:159,218,2,0 -Example1_ref 12616 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:162,221,0,0 0/0:.:383:383:0:0%:162,221,0,0 -Example1_ref 12617 . T C . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:383:1:0.26%:169,214,1,0 0/0:.:384:383:1:0.26%:169,214,1,0 -Example1_ref 12618 . T . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:378:0:0%:166,212,0,0 0/0:.:378:378:0:0%:166,212,0,0 -Example1_ref 12619 . A . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:171,218,0,0 0/0:.:389:389:0:0%:171,218,0,0 -Example1_ref 12620 . A . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:167,217,0,0 0/0:.:384:384:0:0%:167,217,0,0 -Example1_ref 12621 . G . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:164,215,0,0 0/0:.:379:379:0:0%:164,215,0,0 -Example1_ref 12622 . T . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:169,217,0,0 0/0:.:386:386:0:0%:169,217,0,0 -Example1_ref 12623 . G . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:162,209,0,0 0/0:.:371:371:0:0%:162,209,0,0 -Example1_ref 12624 . T . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:164,211,0,0 0/0:.:375:375:0:0%:164,211,0,0 -Example1_ref 12625 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:159,211,0,0 0/0:.:370:370:0:0%:159,211,0,0 -Example1_ref 12626 . T . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:162,207,0,0 0/0:.:369:369:0:0%:162,207,0,0 -Example1_ref 12627 . T . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:162,209,0,0 0/0:.:371:371:0:0%:162,209,0,0 -Example1_ref 12628 . C . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:160,210,0,0 0/0:.:370:370:0:0%:160,210,0,0 -Example1_ref 12629 . G A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:368:1:0.27%:156,212,0,1 0/0:.:369:368:1:0.27%:156,212,0,1 -Example1_ref 12630 . A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:160,209,0,0 0/0:.:369:369:0:0%:160,209,0,0 -Example1_ref 12631 . A . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:154,211,0,0 0/0:.:365:365:0:0%:154,211,0,0 -Example1_ref 12632 . T . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:158,207,0,0 0/0:.:365:365:0:0%:158,207,0,0 -Example1_ref 12633 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:152,206,0,0 0/0:.:358:358:0:0%:152,206,0,0 -Example1_ref 12634 . T . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:160,201,0,0 0/0:.:361:361:0:0%:160,201,0,0 -Example1_ref 12635 . T . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:158,204,0,0 0/0:.:362:362:0:0%:158,204,0,0 -Example1_ref 12636 . T . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:160,203,0,0 0/0:.:363:363:0:0%:160,203,0,0 -Example1_ref 12637 . A . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:157,206,0,0 0/0:.:363:363:0:0%:157,206,0,0 -Example1_ref 12638 . T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:158,200,0,0 0/0:.:358:358:0:0%:158,200,0,0 -Example1_ref 12639 . T . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:157,203,0,0 0/0:.:360:360:0:0%:157,203,0,0 -Example1_ref 12640 . T . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:156,205,0,0 0/0:.:361:361:0:0%:156,205,0,0 -Example1_ref 12641 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:157,205,0,0 0/0:.:362:362:0:0%:157,205,0,0 -Example1_ref 12642 . G . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:152,206,0,0 0/0:.:358:358:0:0%:152,206,0,0 -Example1_ref 12643 . A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:153,204,0,0 0/0:.:357:357:0:0%:153,204,0,0 -Example1_ref 12644 . T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:156,200,0,0 0/0:.:356:356:0:0%:156,200,0,0 -Example1_ref 12645 . T . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:154,206,0,0 0/0:.:360:360:0:0%:154,206,0,0 -Example1_ref 12646 . G T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:147,202,1,0 0/0:.:350:349:1:0.29%:147,202,1,0 -Example1_ref 12647 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:148,206,0,0 0/0:.:354:354:0:0%:148,206,0,0 -Example1_ref 12648 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:149,204,0,0 0/0:.:353:353:0:0%:149,204,0,0 -Example1_ref 12649 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:150,205,0,0 0/0:.:355:355:0:0%:150,205,0,0 -Example1_ref 12650 . G . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:145,200,0,0 0/0:.:345:345:0:0%:145,200,0,0 -Example1_ref 12651 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:147,198,0,0 0/0:.:345:345:0:0%:147,198,0,0 -Example1_ref 12652 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:138,194,0,0 0/0:.:332:332:0:0%:138,194,0,0 -Example1_ref 12653 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:139,195,0,0 0/0:.:334:334:0:0%:139,195,0,0 -Example1_ref 12654 . C . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:135,199,0,0 0/0:.:334:334:0:0%:135,199,0,0 -Example1_ref 12655 . C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:123,198,0,0 0/0:.:321:321:0:0%:123,198,0,0 -Example1_ref 12656 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:128,200,0,0 0/0:.:328:328:0:0%:128,200,0,0 -Example1_ref 12657 . C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:128,200,0,0 0/0:.:328:328:0:0%:128,200,0,0 -Example1_ref 12658 . A G . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:1:0.3%:129,203,1,0 0/0:.:333:332:1:0.3%:129,203,1,0 -Example1_ref 12659 . G T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:322:2:0.62%:121,201,2,0 0/0:.:324:322:2:0.62%:121,201,2,0 -Example1_ref 12660 . GAC G . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:111,198,0,1 0/0:.:310:309:1:0.32%:111,198,0,1 -Example1_ref 12661 . A G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:120,203,0,1 0/0:.:325:323:1:0.31%:120,203,0,1 -Example1_ref 12662 . C A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:321:2:0.62%:125,196,0,2 0/0:.:323:321:2:0.62%:125,196,0,2 -Example1_ref 12663 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:124,200,0,0 0/0:.:324:324:0:0%:124,200,0,0 -Example1_ref 12664 . C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:123,198,0,0 0/0:.:321:321:0:0%:123,198,0,0 -Example1_ref 12665 . A . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:0:0%:122,196,0,0 0/0:.:319:318:0:0%:122,196,0,0 -Example1_ref 12666 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:0:0%:136,195,0,0 0/0:.:332:331:0:0%:136,195,0,0 -Example1_ref 12667 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:141,184,0,0 0/0:.:325:325:0:0%:141,184,0,0 -Example1_ref 12668 . C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:138,191,0,0 0/0:.:329:329:0:0%:138,191,0,0 -Example1_ref 12669 . C . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:139,202,0,0 0/0:.:341:341:0:0%:139,202,0,0 -Example1_ref 12670 . C . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:137,206,0,0 0/0:.:343:343:0:0%:137,206,0,0 -Example1_ref 12671 . A AG . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:144,207,0,1 0/0:.:352:351:1:0.28%:144,207,0,1 -Example1_ref 12672 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:144,201,0,0 0/0:.:345:345:0:0%:144,201,0,0 -Example1_ref 12673 . A G . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:144,205,0,1 0/0:.:350:349:1:0.29%:144,205,0,1 -Example1_ref 12674 . GTT G . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:343:1:0.29%:142,201,0,1 0/0:.:344:343:1:0.29%:142,201,0,1 -Example1_ref 12675 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:148,194,0,0 0/0:.:343:342:0:0%:148,194,0,0 -Example1_ref 12676 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:0:0%:147,187,0,0 0/0:.:335:334:0:0%:147,187,0,0 -Example1_ref 12677 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:145,189,0,0 0/0:.:334:334:0:0%:145,189,0,0 -Example1_ref 12678 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:147,189,0,0 0/0:.:336:336:0:0%:147,189,0,0 -Example1_ref 12679 . G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:139,193,0,0 0/0:.:332:332:0:0%:139,193,0,0 -Example1_ref 12680 . C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:140,188,0,0 0/0:.:328:328:0:0%:140,188,0,0 -Example1_ref 12681 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:138,189,0,0 0/0:.:327:327:0:0%:138,189,0,0 -Example1_ref 12682 . TC T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=6.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:322:2:0.62%:139,183,0,2 0/0:.:325:322:2:0.62%:139,183,0,2 -Example1_ref 12683 . C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:319:0:0%:140,179,0,0 0/0:.:321:319:0:0%:140,179,0,0 -Example1_ref 12684 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:138,185,0,0 0/0:.:323:323:0:0%:138,185,0,0 -Example1_ref 12685 . G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:145,185,0,0 0/0:.:330:330:0:0%:145,185,0,0 -Example1_ref 12686 . C . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:146,177,0,0 0/0:.:323:323:0:0%:146,177,0,0 -Example1_ref 12687 . A ATCT . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:147,191,1,0 0/0:.:339:338:1:0.29%:147,191,1,0 -Example1_ref 12688 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:150,189,0,0 0/0:.:339:339:0:0%:150,189,0,0 -Example1_ref 12689 . A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:147,188,0,0 0/0:.:335:335:0:0%:147,188,0,0 -Example1_ref 12690 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:0:0%:149,186,0,0 0/0:.:336:335:0:0%:149,186,0,0 -Example1_ref 12691 . A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:148,187,0,0 0/0:.:335:335:0:0%:148,187,0,0 -Example1_ref 12692 . G . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:137,186,0,0 0/0:.:323:323:0:0%:137,186,0,0 -Example1_ref 12693 . A T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:139,184,0,1 0/0:.:325:323:1:0.31%:139,184,0,1 -Example1_ref 12694 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:145,154,0,0 0/0:.:299:299:0:0%:145,154,0,0 -Example1_ref 12695 . G . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:136,152,0,0 0/0:.:288:288:0:0%:136,152,0,0 -Example1_ref 12696 . A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:132,151,0,0 0/0:.:283:283:0:0%:132,151,0,0 -Example1_ref 12697 . T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:134,150,0,0 0/0:.:284:284:0:0%:134,150,0,0 -Example1_ref 12698 . G . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:128,151,0,0 0/0:.:279:279:0:0%:128,151,0,0 -Example1_ref 12699 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:131,151,0,0 0/0:.:282:282:0:0%:131,151,0,0 -Example1_ref 12700 . G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:131,150,0,0 0/0:.:281:281:0:0%:131,150,0,0 -Example1_ref 12701 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:132,146,0,0 0/0:.:278:278:0:0%:132,146,0,0 -Example1_ref 12702 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:131,152,0,0 0/0:.:283:283:0:0%:131,152,0,0 -Example1_ref 12703 . T . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:0:0%:131,150,0,0 0/0:.:282:281:0:0%:131,150,0,0 -Example1_ref 12704 . T . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:126,147,0,0 0/0:.:273:273:0:0%:126,147,0,0 -Example1_ref 12705 . G . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:125,149,0,0 0/0:.:274:274:0:0%:125,149,0,0 -Example1_ref 12706 . T . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:130,151,0,0 0/0:.:281:281:0:0%:130,151,0,0 -Example1_ref 12707 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:129,157,0,0 0/0:.:286:286:0:0%:129,157,0,0 -Example1_ref 12708 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:124,151,0,0 0/0:.:275:275:0:0%:124,151,0,0 -Example1_ref 12709 . T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:124,142,0,0 0/0:.:266:266:0:0%:124,142,0,0 -Example1_ref 12710 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:122,146,0,0 0/0:.:268:268:0:0%:122,146,0,0 -Example1_ref 12711 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:124,147,0,0 0/0:.:271:271:0:0%:124,147,0,0 -Example1_ref 12712 . A T . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:122,146,1,0 0/0:.:269:268:1:0.37%:122,146,1,0 -Example1_ref 12713 . G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:113,147,0,0 0/0:.:260:260:0:0%:113,147,0,0 -Example1_ref 12714 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:115,135,0,0 0/0:.:250:250:0:0%:115,135,0,0 -Example1_ref 12715 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:113,134,0,0 0/0:.:247:247:0:0%:113,134,0,0 -Example1_ref 12716 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:116,134,0,0 0/0:.:250:250:0:0%:116,134,0,0 -Example1_ref 12717 . G A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:112,135,1,0 0/0:.:248:247:1:0.4%:112,135,1,0 -Example1_ref 12718 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:110,132,0,0 0/0:.:242:242:0:0%:110,132,0,0 -Example1_ref 12719 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:107,126,0,0 0/0:.:233:233:0:0%:107,126,0,0 -Example1_ref 12720 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:110,134,0,0 0/0:.:244:244:0:0%:110,134,0,0 -Example1_ref 12721 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:112,137,0,0 0/0:.:249:249:0:0%:112,137,0,0 -Example1_ref 12722 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:114,138,0,0 0/0:.:252:252:0:0%:114,138,0,0 -Example1_ref 12723 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:0:0%:114,138,0,0 0/0:.:253:252:0:0%:114,138,0,0 -Example1_ref 12724 . C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:247:247:0:0%:112,135,0,0 -Example1_ref 12725 . G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:103,139,0,0 0/0:.:242:242:0:0%:103,139,0,0 -Example1_ref 12726 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:108,142,0,0 0/0:.:250:250:0:0%:108,142,0,0 -Example1_ref 12727 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:108,137,0,0 0/0:.:245:245:0:0%:108,137,0,0 -Example1_ref 12728 . G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:105,138,0,0 0/0:.:243:243:0:0%:105,138,0,0 -Example1_ref 12729 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:110,141,0,0 0/0:.:251:251:0:0%:110,141,0,0 -Example1_ref 12730 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:106,140,0,0 0/0:.:246:246:0:0%:106,140,0,0 -Example1_ref 12731 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:104,134,0,0 0/0:.:238:238:0:0%:104,134,0,0 -Example1_ref 12732 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:100,141,0,0 0/0:.:241:241:0:0%:100,141,0,0 -Example1_ref 12733 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:100,141,0,0 0/0:.:241:241:0:0%:100,141,0,0 -Example1_ref 12734 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:99,141,0,0 0/0:.:240:240:0:0%:99,141,0,0 -Example1_ref 12735 . T G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:94,139,0,1 0/0:.:234:233:1:0.43%:94,139,0,1 -Example1_ref 12736 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:94,136,0,0 0/0:.:230:230:0:0%:94,136,0,0 -Example1_ref 12737 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:94,134,0,0 0/0:.:228:228:0:0%:94,134,0,0 -Example1_ref 12738 . A G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:95,136,0,1 0/0:.:232:231:1:0.43%:95,136,0,1 -Example1_ref 12739 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:95,129,0,0 0/0:.:224:224:0:0%:95,129,0,0 -Example1_ref 12740 . C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:94,132,0,0 0/0:.:226:226:0:0%:94,132,0,0 -Example1_ref 12741 . C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:90,136,0,0 0/0:.:226:226:0:0%:90,136,0,0 -Example1_ref 12742 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:93,133,0,0 0/0:.:226:226:0:0%:93,133,0,0 -Example1_ref 12743 . G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:91,132,0,0 0/0:.:223:223:0:0%:91,132,0,0 -Example1_ref 12744 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:92,131,0,0 0/0:.:223:223:0:0%:92,131,0,0 -Example1_ref 12745 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:93,133,0,0 0/0:.:226:226:0:0%:93,133,0,0 -Example1_ref 12746 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:92,123,0,0 0/0:.:215:215:0:0%:92,123,0,0 -Example1_ref 12747 . C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:92,131,0,0 0/0:.:223:223:0:0%:92,131,0,0 -Example1_ref 12748 . T G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:93,127,0,1 0/0:.:221:220:1:0.45%:93,127,0,1 -Example1_ref 12749 . A G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:94,129,0,1 0/0:.:224:223:1:0.45%:94,129,0,1 -Example1_ref 12750 . C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:94,127,0,0 0/0:.:221:221:0:0%:94,127,0,0 -Example1_ref 12751 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:221:221:0:0%:93,128,0,0 -Example1_ref 12752 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:92,129,0,0 0/0:.:221:221:0:0%:92,129,0,0 -Example1_ref 12753 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:86,130,0,0 0/0:.:216:216:0:0%:86,130,0,0 -Example1_ref 12754 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:221:221:0:0%:93,128,0,0 -Example1_ref 12755 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:90,123,0,0 0/0:.:213:213:0:0%:90,123,0,0 -Example1_ref 12756 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:95,125,0,0 0/0:.:220:220:0:0%:95,125,0,0 -Example1_ref 12757 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:221:221:0:0%:93,128,0,0 -Example1_ref 12758 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:96,126,0,0 0/0:.:222:222:0:0%:96,126,0,0 -Example1_ref 12759 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:96,124,0,0 0/0:.:220:220:0:0%:96,124,0,0 -Example1_ref 12760 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:95,125,0,0 0/0:.:220:220:0:0%:95,125,0,0 -Example1_ref 12761 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:0:0%:94,128,0,0 0/0:.:223:222:0:0%:94,128,0,0 -Example1_ref 12762 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:94,121,0,0 0/0:.:215:215:0:0%:94,121,0,0 -Example1_ref 12763 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:92,129,0,0 0/0:.:221:221:0:0%:92,129,0,0 -Example1_ref 12764 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:95,127,0,0 0/0:.:222:222:0:0%:95,127,0,0 -Example1_ref 12765 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:91,125,0,0 0/0:.:216:216:0:0%:91,125,0,0 -Example1_ref 12766 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:221:221:0:0%:93,128,0,0 -Example1_ref 12767 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:95,125,0,0 0/0:.:220:220:0:0%:95,125,0,0 -Example1_ref 12768 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:95,129,0,0 0/0:.:224:224:0:0%:95,129,0,0 -Example1_ref 12769 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:92,126,0,0 0/0:.:218:218:0:0%:92,126,0,0 -Example1_ref 12770 . C A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=6.8837E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:214:2:0.93%:96,118,0,2 0/0:.:217:214:2:0.93%:96,118,0,2 -Example1_ref 12771 . C A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:219:1:0.45%:91,128,1,0 0/0:.:221:219:1:0.45%:91,128,1,0 -Example1_ref 12772 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:97,128,0,0 0/0:.:225:225:0:0%:97,128,0,0 -Example1_ref 12773 . G A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:94,128,1,0 0/0:.:223:222:1:0.45%:94,128,1,0 -Example1_ref 12774 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:221:221:0:0%:93,128,0,0 -Example1_ref 12775 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:94,127,0,0 0/0:.:221:221:0:0%:94,127,0,0 -Example1_ref 12776 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:93,129,0,0 0/0:.:222:222:0:0%:93,129,0,0 -Example1_ref 12777 . G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:96,127,0,0 0/0:.:223:223:0:0%:96,127,0,0 -Example1_ref 12778 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:94,125,0,0 0/0:.:219:219:0:0%:94,125,0,0 -Example1_ref 12779 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:95,128,0,0 0/0:.:223:223:0:0%:95,128,0,0 -Example1_ref 12780 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:96,126,0,0 0/0:.:222:222:0:0%:96,126,0,0 -Example1_ref 12781 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:94,120,0,0 0/0:.:214:214:0:0%:94,120,0,0 -Example1_ref 12782 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:91,126,0,0 0/0:.:217:217:0:0%:91,126,0,0 -Example1_ref 12783 . A T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:94,125,0,1 0/0:.:220:219:1:0.45%:94,125,0,1 -Example1_ref 12784 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:95,127,0,0 0/0:.:222:222:0:0%:95,127,0,0 -Example1_ref 12785 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:96,126,0,0 0/0:.:222:222:0:0%:96,126,0,0 -Example1_ref 12786 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:92,123,0,0 0/0:.:215:215:0:0%:92,123,0,0 -Example1_ref 12787 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:96,127,0,0 0/0:.:223:223:0:0%:96,127,0,0 -Example1_ref 12788 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:97,130,0,0 0/0:.:227:227:0:0%:97,130,0,0 -Example1_ref 12789 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:97,125,0,0 0/0:.:222:222:0:0%:97,125,0,0 -Example1_ref 12790 . T A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:93,130,0,1 0/0:.:224:223:1:0.45%:93,130,0,1 -Example1_ref 12791 . TATG T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:94,130,1,0 0/0:.:225:224:1:0.44%:94,130,1,0 -Example1_ref 12792 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:95,132,0,0 0/0:.:227:227:0:0%:95,132,0,0 -Example1_ref 12793 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:96,132,0,0 0/0:.:228:228:0:0%:96,132,0,0 -Example1_ref 12794 . G C . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:93,131,1,0 0/0:.:226:224:1:0.44%:93,131,1,0 -Example1_ref 12795 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:90,133,0,0 0/0:.:223:223:0:0%:90,133,0,0 -Example1_ref 12796 . T C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:91,131,0,1 0/0:.:223:222:1:0.45%:91,131,0,1 -Example1_ref 12797 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:92,135,0,0 0/0:.:227:227:0:0%:92,135,0,0 -Example1_ref 12798 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:89,133,0,0 0/0:.:222:222:0:0%:89,133,0,0 -Example1_ref 12799 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:89,134,0,0 0/0:.:223:223:0:0%:89,134,0,0 -Example1_ref 12800 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:84,134,0,0 0/0:.:218:218:0:0%:84,134,0,0 -Example1_ref 12801 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:91,133,0,0 0/0:.:224:224:0:0%:91,133,0,0 -Example1_ref 12802 . C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:90,125,0,0 0/0:.:215:215:0:0%:90,125,0,0 -Example1_ref 12803 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:84,128,0,0 0/0:.:212:212:0:0%:84,128,0,0 -Example1_ref 12804 . C T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:83,124,0,1 0/0:.:208:207:1:0.48%:83,124,0,1 -Example1_ref 12805 . G T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:84,126,1,0 0/0:.:211:210:1:0.47%:84,126,1,0 -Example1_ref 12806 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:89,128,0,0 0/0:.:217:217:0:0%:89,128,0,0 -Example1_ref 12807 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:90,126,0,0 0/0:.:216:216:0:0%:90,126,0,0 -Example1_ref 12808 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:90,123,0,0 0/0:.:213:213:0:0%:90,123,0,0 -Example1_ref 12809 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:92,129,0,0 0/0:.:221:221:0:0%:92,129,0,0 -Example1_ref 12810 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:89,130,0,0 0/0:.:219:219:0:0%:89,130,0,0 -Example1_ref 12811 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:90,130,0,0 0/0:.:220:220:0:0%:90,130,0,0 -Example1_ref 12812 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:90,127,0,0 0/0:.:217:217:0:0%:90,127,0,0 -Example1_ref 12813 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:90,128,0,0 0/0:.:218:218:0:0%:90,128,0,0 -Example1_ref 12814 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:90,125,0,0 0/0:.:215:215:0:0%:90,125,0,0 -Example1_ref 12815 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:91,125,0,0 0/0:.:216:216:0:0%:91,125,0,0 -Example1_ref 12816 . T A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:89,126,0,1 0/0:.:216:215:1:0.46%:89,126,0,1 -Example1_ref 12817 . G . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:88,123,0,0 0/0:.:211:211:0:0%:88,123,0,0 -Example1_ref 12818 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:85,128,0,0 0/0:.:213:213:0:0%:85,128,0,0 -Example1_ref 12819 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:90,130,0,0 0/0:.:220:220:0:0%:90,130,0,0 -Example1_ref 12820 . C CA . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:91,121,0,1 0/0:.:213:212:1:0.47%:91,121,0,1 -Example1_ref 12821 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:218:218:0:0%:91,127,0,0 -Example1_ref 12822 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:92,126,0,0 0/0:.:218:218:0:0%:92,126,0,0 -Example1_ref 12823 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:94,129,0,0 0/0:.:223:223:0:0%:94,129,0,0 -Example1_ref 12824 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:218:218:0:0%:91,127,0,0 -Example1_ref 12825 . CAAG C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:91,124,1,0 0/0:.:216:215:1:0.46%:91,124,1,0 -Example1_ref 12826 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:93,129,0,0 0/0:.:222:222:0:0%:93,129,0,0 -Example1_ref 12827 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:87,129,0,0 0/0:.:216:216:0:0%:87,129,0,0 -Example1_ref 12828 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:89,126,0,0 0/0:.:215:215:0:0%:89,126,0,0 -Example1_ref 12829 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:89,128,0,0 0/0:.:217:217:0:0%:89,128,0,0 -Example1_ref 12830 . C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:90,125,0,0 0/0:.:215:215:0:0%:90,125,0,0 -Example1_ref 12831 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:0:0%:90,115,0,0 0/0:.:206:205:0:0%:90,115,0,0 -Example1_ref 12832 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:90,116,0,0 0/0:.:206:206:0:0%:90,116,0,0 -Example1_ref 12833 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:91,121,0,0 0/0:.:212:212:0:0%:91,121,0,0 -Example1_ref 12834 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:91,120,0,0 0/0:.:211:211:0:0%:91,120,0,0 -Example1_ref 12835 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:88,119,0,0 0/0:.:207:207:0:0%:88,119,0,0 -Example1_ref 12836 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:84,119,0,0 0/0:.:203:203:0:0%:84,119,0,0 -Example1_ref 12837 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:89,117,0,0 0/0:.:206:206:0:0%:89,117,0,0 -Example1_ref 12838 . T C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:87,119,1,0 0/0:.:207:206:1:0.48%:87,119,1,0 -Example1_ref 12839 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:90,120,0,0 0/0:.:210:210:0:0%:90,120,0,0 -Example1_ref 12840 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:90,120,0,0 0/0:.:210:210:0:0%:90,120,0,0 -Example1_ref 12841 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:87,119,0,0 0/0:.:206:206:0:0%:87,119,0,0 -Example1_ref 12842 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:89,120,0,0 0/0:.:209:209:0:0%:89,120,0,0 -Example1_ref 12843 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:84,119,0,0 0/0:.:203:203:0:0%:84,119,0,0 -Example1_ref 12844 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:85,120,0,0 0/0:.:205:205:0:0%:85,120,0,0 -Example1_ref 12845 . G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:85,119,0,0 0/0:.:204:204:0:0%:85,119,0,0 -Example1_ref 12846 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:85,121,0,0 0/0:.:206:206:0:0%:85,121,0,0 -Example1_ref 12847 . C T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:84,115,1,0 0/0:.:200:199:1:0.5%:84,115,1,0 -Example1_ref 12848 . C A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:198:1:0.5%:84,114,0,1 0/0:.:201:198:1:0.5%:84,114,0,1 -Example1_ref 12849 . A G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=7.5063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:197:1:0.51%:83,114,0,1 0/0:.:200:197:1:0.51%:83,114,0,1 -Example1_ref 12850 . T C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.5062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:201:1:0.5%:83,118,1,0 0/0:.:204:201:1:0.5%:83,118,1,0 -Example1_ref 12851 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:85,116,0,0 0/0:.:201:201:0:0%:85,116,0,0 -Example1_ref 12852 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:85,118,0,0 0/0:.:203:203:0:0%:85,118,0,0 -Example1_ref 12853 . T C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:87,117,0,1 0/0:.:205:204:1:0.49%:87,117,0,1 -Example1_ref 12854 . T C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:1:0.49%:87,116,0,1 0/0:.:204:203:1:0.49%:87,116,0,1 -Example1_ref 12855 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:83,117,0,0 0/0:.:200:200:0:0%:83,117,0,0 -Example1_ref 12856 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:74,116,0,0 0/0:.:190:190:0:0%:74,116,0,0 -Example1_ref 12857 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:71,118,0,0 0/0:.:189:189:0:0%:71,118,0,0 -Example1_ref 12858 . C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:64,116,0,0 0/0:.:181:180:0:0%:64,116,0,0 -Example1_ref 12859 . A AC . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.5076E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:62,101,1,0 0/0:.:164:163:1:0.61%:62,101,1,0 -Example1_ref 12860 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:62,99,0,0 0/0:.:161:161:0:0%:62,99,0,0 -Example1_ref 12861 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:63,101,0,0 0/0:.:164:164:0:0%:63,101,0,0 -Example1_ref 12862 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:59,101,0,0 0/0:.:160:160:0:0%:59,101,0,0 -Example1_ref 12863 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:56,101,0,0 0/0:.:157:157:0:0%:56,101,0,0 -Example1_ref 12864 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:58,102,0,0 0/0:.:160:160:0:0%:58,102,0,0 -Example1_ref 12865 . T C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:59,99,0,1 0/0:.:159:158:1:0.63%:59,99,0,1 -Example1_ref 12866 . A AT . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.5077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:58,103,1,0 0/0:.:162:161:1:0.62%:58,103,1,0 -Example1_ref 12867 . T G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:58,101,0,1 0/0:.:160:159:1:0.62%:58,101,0,1 -Example1_ref 12868 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:57,101,0,0 0/0:.:158:158:0:0%:57,101,0,0 -Example1_ref 12869 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:58,102,0,0 0/0:.:160:160:0:0%:58,102,0,0 -Example1_ref 12870 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:59,103,0,0 0/0:.:162:162:0:0%:59,103,0,0 -Example1_ref 12871 . T TCTGTCTC . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:56,101,1,0 0/0:.:158:157:1:0.63%:56,101,1,0 -Example1_ref 12872 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:56,99,0,0 0/0:.:155:155:0:0%:56,99,0,0 -Example1_ref 12873 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:56,102,0,0 0/0:.:158:158:0:0%:56,102,0,0 -Example1_ref 12874 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:56,100,0,0 0/0:.:156:156:0:0%:56,100,0,0 -Example1_ref 12875 . T TG . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:48,100,0,1 0/0:.:149:148:1:0.67%:48,100,0,1 -Example1_ref 12876 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:48,96,0,0 0/0:.:144:144:0:0%:48,96,0,0 -Example1_ref 12877 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:44,88,0,0 0/0:.:132:132:0:0%:44,88,0,0 -Example1_ref 12878 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:45,94,0,0 0/0:.:139:139:0:0%:45,94,0,0 -Example1_ref 12879 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:45,98,0,0 0/0:.:143:143:0:0%:45,98,0,0 -Example1_ref 12880 . T TGTGTATAA . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:48,96,0,1 0/0:.:145:144:1:0.69%:48,96,0,1 -Example1_ref 12881 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:46,95,0,0 0/0:.:141:141:0:0%:46,95,0,0 -Example1_ref 12882 . A T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:50,94,0,1 0/0:.:145:144:1:0.69%:50,94,0,1 -Example1_ref 12883 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:53,96,0,0 0/0:.:149:149:0:0%:53,96,0,0 -Example1_ref 12884 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:53,95,0,0 0/0:.:148:148:0:0%:53,95,0,0 -Example1_ref 12885 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:53,96,0,0 0/0:.:149:149:0:0%:53,96,0,0 -Example1_ref 12886 . T A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:52,95,0,1 0/0:.:148:147:1:0.68%:52,95,0,1 -Example1_ref 12887 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:53,92,0,0 0/0:.:145:145:0:0%:53,92,0,0 -Example1_ref 12888 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:61,92,0,0 0/0:.:153:153:0:0%:61,92,0,0 -Example1_ref 12889 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:60,94,0,0 0/0:.:154:154:0:0%:60,94,0,0 -Example1_ref 12890 . A ACTGTC . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:145:1:0.68%:54,91,1,0 0/0:.:147:145:1:0.68%:54,91,1,0 -Example1_ref 12891 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:58,83,0,0 0/0:.:141:141:0:0%:58,83,0,0 -Example1_ref 12892 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:55,84,0,0 0/0:.:139:139:0:0%:55,84,0,0 -Example1_ref 12893 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:58,83,0,0 0/0:.:141:141:0:0%:58,83,0,0 -Example1_ref 12894 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:58,81,0,0 0/0:.:139:139:0:0%:58,81,0,0 -Example1_ref 12895 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:140:0:0%:56,84,0,0 0/0:.:142:140:0:0%:56,84,0,0 -Example1_ref 12896 . C A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=7.5091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:56,81,0,1 0/0:.:138:137:1:0.72%:56,81,0,1 -Example1_ref 12897 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:55,77,0,0 0/0:.:132:132:0:0%:55,77,0,0 -Example1_ref 12898 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:56,75,0,0 0/0:.:131:131:0:0%:56,75,0,0 -Example1_ref 12899 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:55,76,0,0 0/0:.:131:131:0:0%:55,76,0,0 -Example1_ref 12900 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:130:1:0.76%:55,75,0,1 0/0:.:132:130:1:0.76%:55,75,0,1 -Example1_ref 12901 . A G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:57,76,0,1 0/0:.:134:133:1:0.75%:57,76,0,1 -Example1_ref 12902 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:61,78,0,0 0/0:.:139:139:0:0%:61,78,0,0 -Example1_ref 12903 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:65,73,0,0 0/0:.:138:138:0:0%:65,73,0,0 -Example1_ref 12904 . T C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:64,78,1,0 0/0:.:143:142:1:0.7%:64,78,1,0 -Example1_ref 12905 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:66,73,0,0 0/0:.:139:139:0:0%:66,73,0,0 -Example1_ref 12906 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:65,72,0,0 0/0:.:137:137:0:0%:65,72,0,0 -Example1_ref 12907 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:65,79,0,0 0/0:.:144:144:0:0%:65,79,0,0 -Example1_ref 12908 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:64,80,0,0 0/0:.:144:144:0:0%:64,80,0,0 -Example1_ref 12909 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:65,83,0,0 0/0:.:148:148:0:0%:65,83,0,0 -Example1_ref 12910 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:66,85,0,0 0/0:.:151:151:0:0%:66,85,0,0 -Example1_ref 12911 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:67,82,0,0 0/0:.:149:149:0:0%:67,82,0,0 -Example1_ref 12912 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:69,84,0,0 0/0:.:153:153:0:0%:69,84,0,0 -Example1_ref 12913 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:70,85,0,0 0/0:.:155:155:0:0%:70,85,0,0 -Example1_ref 12914 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:70,85,0,0 0/0:.:155:155:0:0%:70,85,0,0 -Example1_ref 12915 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:68,83,0,0 0/0:.:151:151:0:0%:68,83,0,0 -Example1_ref 12916 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:69,78,0,0 0/0:.:147:147:0:0%:69,78,0,0 -Example1_ref 12917 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:67,77,0,0 0/0:.:144:144:0:0%:67,77,0,0 -Example1_ref 12918 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:66,76,0,0 0/0:.:142:142:0:0%:66,76,0,0 -Example1_ref 12919 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:66,74,0,0 0/0:.:140:140:0:0%:66,74,0,0 -Example1_ref 12920 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:66,75,0,0 0/0:.:141:141:0:0%:66,75,0,0 -Example1_ref 12921 . T A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:66,75,0,1 0/0:.:142:141:1:0.7%:66,75,0,1 -Example1_ref 12922 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:66,75,0,0 0/0:.:141:141:0:0%:66,75,0,0 -Example1_ref 12923 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:64,77,0,0 0/0:.:141:141:0:0%:64,77,0,0 -Example1_ref 12924 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:63,74,0,0 0/0:.:137:137:0:0%:63,74,0,0 -Example1_ref 12925 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:64,75,0,0 0/0:.:140:139:0:0%:64,75,0,0 -Example1_ref 12926 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:0:0%:63,78,0,0 0/0:.:142:141:0:0%:63,78,0,0 -Example1_ref 12927 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:63,79,0,0 0/0:.:142:142:0:0%:63,79,0,0 -Example1_ref 12928 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:68,78,0,0 0/0:.:146:146:0:0%:68,78,0,0 -Example1_ref 12929 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:68,77,0,0 0/0:.:145:145:0:0%:68,77,0,0 -Example1_ref 12930 . C T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:68,78,0,1 0/0:.:147:146:1:0.68%:68,78,0,1 -Example1_ref 12931 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:68,79,0,0 0/0:.:147:147:0:0%:68,79,0,0 -Example1_ref 12932 . GATA G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:67,80,1,0 0/0:.:148:147:1:0.68%:67,80,1,0 -Example1_ref 12933 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:63,77,0,0 0/0:.:140:140:0:0%:63,77,0,0 -Example1_ref 12934 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:66,80,0,0 0/0:.:146:146:0:0%:66,80,0,0 -Example1_ref 12935 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:66,79,0,0 0/0:.:145:145:0:0%:66,79,0,0 -Example1_ref 12936 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:0:0%:62,75,0,0 0/0:.:138:137:0:0%:62,75,0,0 -Example1_ref 12937 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:63,76,0,0 0/0:.:139:139:0:0%:63,76,0,0 -Example1_ref 12938 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:63,74,0,0 0/0:.:137:137:0:0%:63,74,0,0 -Example1_ref 12939 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:64,76,0,0 0/0:.:140:140:0:0%:64,76,0,0 -Example1_ref 12940 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:64,77,0,0 0/0:.:141:141:0:0%:64,77,0,0 -Example1_ref 12941 . T A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:64,77,1,0 0/0:.:142:141:1:0.7%:64,77,1,0 -Example1_ref 12942 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:65,73,0,0 0/0:.:139:138:0:0%:65,73,0,0 -Example1_ref 12943 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:64,76,0,0 0/0:.:140:140:0:0%:64,76,0,0 -Example1_ref 12944 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:64,71,0,0 0/0:.:135:135:0:0%:64,71,0,0 -Example1_ref 12945 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:62,73,0,0 0/0:.:135:135:0:0%:62,73,0,0 -Example1_ref 12946 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:63,76,0,0 0/0:.:139:139:0:0%:63,76,0,0 -Example1_ref 12947 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:62,72,0,0 0/0:.:134:134:0:0%:62,72,0,0 -Example1_ref 12948 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:135:135:0:0%:61,74,0,0 -Example1_ref 12949 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 12950 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:58,75,0,0 0/0:.:133:133:0:0%:58,75,0,0 -Example1_ref 12951 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:137:137:0:0%:61,76,0,0 -Example1_ref 12952 . T C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:60,73,0,1 0/0:.:134:133:1:0.75%:60,73,0,1 -Example1_ref 12953 . C A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:61,74,0,1 0/0:.:136:135:1:0.74%:61,74,0,1 -Example1_ref 12954 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:133:133:0:0%:59,74,0,0 -Example1_ref 12955 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:138:138:0:0%:61,77,0,0 -Example1_ref 12956 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:63,77,0,0 0/0:.:140:140:0:0%:63,77,0,0 -Example1_ref 12957 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:59,80,0,0 0/0:.:139:139:0:0%:59,80,0,0 -Example1_ref 12958 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:62,79,0,0 0/0:.:141:141:0:0%:62,79,0,0 -Example1_ref 12959 . A G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.5092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:61,74,0,1 0/0:.:136:135:1:0.74%:61,74,0,1 -Example1_ref 12960 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:61,79,0,0 0/0:.:140:140:0:0%:61,79,0,0 -Example1_ref 12961 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:138:138:0:0%:61,77,0,0 -Example1_ref 12962 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:61,78,0,0 0/0:.:139:139:0:0%:61,78,0,0 -Example1_ref 12963 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:61,79,0,0 0/0:.:140:140:0:0%:61,79,0,0 -Example1_ref 12964 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:61,79,0,0 0/0:.:140:140:0:0%:61,79,0,0 -Example1_ref 12965 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:60,79,0,0 0/0:.:139:139:0:0%:60,79,0,0 -Example1_ref 12966 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:59,79,0,0 0/0:.:138:138:0:0%:59,79,0,0 -Example1_ref 12967 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:58,83,0,0 0/0:.:141:141:0:0%:58,83,0,0 -Example1_ref 12968 . G T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:58,81,1,0 0/0:.:140:139:1:0.71%:58,81,1,0 -Example1_ref 12969 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:59,82,0,0 0/0:.:141:141:0:0%:59,82,0,0 -Example1_ref 12970 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:59,81,0,0 0/0:.:140:140:0:0%:59,81,0,0 -Example1_ref 12971 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:62,84,0,0 0/0:.:146:146:0:0%:62,84,0,0 -Example1_ref 12972 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:63,82,0,0 0/0:.:145:145:0:0%:63,82,0,0 -Example1_ref 12973 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:63,80,0,0 0/0:.:143:143:0:0%:63,80,0,0 -Example1_ref 12974 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:62,83,0,0 0/0:.:145:145:0:0%:62,83,0,0 -Example1_ref 12975 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:61,82,0,0 0/0:.:143:143:0:0%:61,82,0,0 -Example1_ref 12976 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:60,79,0,0 0/0:.:139:139:0:0%:60,79,0,0 -Example1_ref 12977 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:61,78,0,0 0/0:.:139:139:0:0%:61,78,0,0 -Example1_ref 12978 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:137:137:0:0%:61,76,0,0 -Example1_ref 12979 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:59,79,0,0 0/0:.:138:138:0:0%:59,79,0,0 -Example1_ref 12980 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:135:135:0:0%:60,75,0,0 -Example1_ref 12981 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:61,73,0,0 0/0:.:134:134:0:0%:61,73,0,0 -Example1_ref 12982 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:59,75,0,0 0/0:.:134:134:0:0%:59,75,0,0 -Example1_ref 12983 . G T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:59,73,1,0 0/0:.:133:132:1:0.75%:59,73,1,0 -Example1_ref 12984 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:58,76,0,0 0/0:.:134:134:0:0%:58,76,0,0 -Example1_ref 12985 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:131:131:0:0%:59,72,0,0 -Example1_ref 12986 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 12987 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:137:137:0:0%:61,76,0,0 -Example1_ref 12988 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:61,75,0,0 0/0:.:136:136:0:0%:61,75,0,0 -Example1_ref 12989 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:135:135:0:0%:61,74,0,0 -Example1_ref 12990 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 12991 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 12992 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:134:134:0:0%:60,74,0,0 -Example1_ref 12993 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 12994 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:59,75,0,0 0/0:.:134:134:0:0%:59,75,0,0 -Example1_ref 12995 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:134:134:0:0%:60,74,0,0 -Example1_ref 12996 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:135:135:0:0%:60,75,0,0 -Example1_ref 12997 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:62,75,0,0 0/0:.:137:137:0:0%:62,75,0,0 -Example1_ref 12998 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 12999 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:137:137:0:0%:61,76,0,0 -Example1_ref 13000 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:135:135:0:0%:60,75,0,0 -Example1_ref 13001 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 13002 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:60,77,0,0 0/0:.:137:137:0:0%:60,77,0,0 -Example1_ref 13003 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:62,77,0,0 0/0:.:139:139:0:0%:62,77,0,0 -Example1_ref 13004 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:61,72,0,0 0/0:.:133:133:0:0%:61,72,0,0 -Example1_ref 13005 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:133:133:0:0%:59,74,0,0 -Example1_ref 13006 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:128:128:0:0%:59,69,0,0 -Example1_ref 13007 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:61,71,0,0 0/0:.:132:132:0:0%:61,71,0,0 -Example1_ref 13008 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:131:131:0:0%:59,72,0,0 -Example1_ref 13009 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:61,73,0,0 0/0:.:134:134:0:0%:61,73,0,0 -Example1_ref 13010 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:61,70,0,0 0/0:.:131:131:0:0%:61,70,0,0 -Example1_ref 13011 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 13012 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:130:130:0:0%:58,72,0,0 -Example1_ref 13013 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:132:132:0:0%:58,74,0,0 -Example1_ref 13014 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:131:131:0:0%:59,72,0,0 -Example1_ref 13015 . T C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:59,72,0,1 0/0:.:132:131:1:0.76%:59,72,0,1 -Example1_ref 13016 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:59,70,0,0 0/0:.:129:129:0:0%:59,70,0,0 -Example1_ref 13017 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:59,73,0,0 0/0:.:132:132:0:0%:59,73,0,0 -Example1_ref 13018 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:132:132:0:0%:58,74,0,0 -Example1_ref 13019 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:131:131:0:0%:58,73,0,0 -Example1_ref 13020 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:131:131:0:0%:58,73,0,0 -Example1_ref 13021 . T C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.5095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,0,1 0/0:.:132:131:1:0.76%:60,71,0,1 -Example1_ref 13022 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:134:134:0:0%:60,74,0,0 -Example1_ref 13023 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:131:131:0:0%:59,72,0,0 -Example1_ref 13024 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:53,72,0,0 0/0:.:125:125:0:0%:53,72,0,0 -Example1_ref 13025 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:133:133:0:0%:59,74,0,0 -Example1_ref 13026 . C T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.5102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:56,66,1,0 0/0:.:123:122:1:0.81%:56,66,1,0 -Example1_ref 13027 . C A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:124:1:0.8%:55,69,1,0 0/0:.:126:124:1:0.8%:55,69,1,0 -Example1_ref 13028 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:128:128:0:0%:56,72,0,0 -Example1_ref 13029 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:128:128:0:0%:56,72,0,0 -Example1_ref 13030 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:128:128:0:0%:57,71,0,0 -Example1_ref 13031 . G T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:57,71,1,0 0/0:.:129:128:1:0.78%:57,71,1,0 -Example1_ref 13032 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:60,71,0,0 0/0:.:131:131:0:0%:60,71,0,0 -Example1_ref 13033 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:59,70,0,0 0/0:.:129:129:0:0%:59,70,0,0 -Example1_ref 13034 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:133:133:0:0%:59,74,0,0 -Example1_ref 13035 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:59,71,0,0 0/0:.:130:130:0:0%:59,71,0,0 -Example1_ref 13036 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:61,70,0,0 0/0:.:131:131:0:0%:61,70,0,0 -Example1_ref 13037 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:58,71,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 13038 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:61,69,0,0 0/0:.:130:130:0:0%:61,69,0,0 -Example1_ref 13039 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:58,71,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 13040 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:55,70,0,0 0/0:.:125:125:0:0%:55,70,0,0 -Example1_ref 13041 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:128:128:0:0%:59,69,0,0 -Example1_ref 13042 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:128:128:0:0%:57,71,0,0 -Example1_ref 13043 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:58,70,0,0 0/0:.:128:128:0:0%:58,70,0,0 -Example1_ref 13044 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:58,69,0,0 0/0:.:127:127:0:0%:58,69,0,0 -Example1_ref 13045 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:58,70,0,0 0/0:.:128:128:0:0%:58,70,0,0 -Example1_ref 13046 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:58,69,0,0 0/0:.:127:127:0:0%:58,69,0,0 -Example1_ref 13047 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:60,67,0,0 0/0:.:127:127:0:0%:60,67,0,0 -Example1_ref 13048 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:61,68,0,0 0/0:.:129:129:0:0%:61,68,0,0 -Example1_ref 13049 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:60,69,0,0 0/0:.:129:129:0:0%:60,69,0,0 -Example1_ref 13050 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:128:128:0:0%:59,69,0,0 -Example1_ref 13051 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:61,69,0,0 0/0:.:130:130:0:0%:61,69,0,0 -Example1_ref 13052 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:128:128:0:0%:59,69,0,0 -Example1_ref 13053 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:60,69,0,0 0/0:.:129:129:0:0%:60,69,0,0 -Example1_ref 13054 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:58,66,0,0 0/0:.:124:124:0:0%:58,66,0,0 -Example1_ref 13055 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:57,63,0,0 0/0:.:120:120:0:0%:57,63,0,0 -Example1_ref 13056 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:56,63,0,0 0/0:.:119:119:0:0%:56,63,0,0 -Example1_ref 13057 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:58,66,0,0 0/0:.:124:124:0:0%:58,66,0,0 -Example1_ref 13058 . G T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=7.5104E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:56,64,1,0 0/0:.:121:120:1:0.83%:56,64,1,0 -Example1_ref 13059 . G T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.5103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:121:1:0.82%:54,67,1,0 0/0:.:122:121:1:0.82%:54,67,1,0 -Example1_ref 13060 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:58,66,0,0 0/0:.:124:124:0:0%:58,66,0,0 -Example1_ref 13061 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:57,66,0,0 0/0:.:123:123:0:0%:57,66,0,0 -Example1_ref 13062 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:57,64,0,0 0/0:.:121:121:0:0%:57,64,0,0 -Example1_ref 13063 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:60,65,0,0 0/0:.:125:125:0:0%:60,65,0,0 -Example1_ref 13064 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:60,62,0,0 0/0:.:122:122:0:0%:60,62,0,0 -Example1_ref 13065 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:58,63,0,0 0/0:.:121:121:0:0%:58,63,0,0 -Example1_ref 13066 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:61,65,0,0 0/0:.:126:126:0:0%:61,65,0,0 -Example1_ref 13067 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:125:125:0:0%:62,63,0,0 -Example1_ref 13068 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:124:124:0:0%:61,63,0,0 -Example1_ref 13069 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:124:124:0:0%:61,63,0,0 -Example1_ref 13070 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:59,63,0,0 0/0:.:122:122:0:0%:59,63,0,0 -Example1_ref 13071 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:60,62,0,0 0/0:.:122:122:0:0%:60,62,0,0 -Example1_ref 13072 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:116:116:0:0%:56,60,0,0 -Example1_ref 13073 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:114:114:0:0%:55,59,0,0 -Example1_ref 13074 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:53,61,0,0 0/0:.:114:114:0:0%:53,61,0,0 -Example1_ref 13075 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 13076 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:54,60,0,0 0/0:.:114:114:0:0%:54,60,0,0 -Example1_ref 13077 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:111:111:0:0%:52,59,0,0 -Example1_ref 13078 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:108:108:0:0%:48,60,0,0 -Example1_ref 13079 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 13080 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 13081 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:56,57,0,0 0/0:.:113:113:0:0%:56,57,0,0 -Example1_ref 13082 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:112:112:0:0%:53,59,0,0 -Example1_ref 13083 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:115:115:0:0%:57,58,0,0 -Example1_ref 13084 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:58,57,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 13085 . TACA T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=7.5107E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:116:1:0.85%:59,57,1,0 0/0:.:117:116:1:0.85%:59,57,1,0 -Example1_ref 13086 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:114:114:0:0%:55,59,0,0 -Example1_ref 13087 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 13088 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:58,57,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 13089 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:124:124:0:0%:65,59,0,0 -Example1_ref 13090 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 13091 . C A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:61,58,1,0 0/0:.:120:119:1:0.83%:61,58,1,0 -Example1_ref 13092 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:62,57,0,0 0/0:.:119:119:0:0%:62,57,0,0 -Example1_ref 13093 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:62,57,0,0 0/0:.:119:119:0:0%:62,57,0,0 -Example1_ref 13094 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 13095 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:117:117:0:0%:59,58,0,0 -Example1_ref 13096 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:117:117:0:0%:59,58,0,0 -Example1_ref 13097 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 13098 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:55,57,0,0 0/0:.:112:112:0:0%:55,57,0,0 -Example1_ref 13099 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:57,45,0,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 13100 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:56,46,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 13101 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:55,45,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 13102 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 13103 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 13104 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 13105 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 13106 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:50,46,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 13107 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:53,46,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 13108 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 13109 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 13110 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:52,45,0,0 0/0:.:97:97:0:0%:52,45,0,0 -Example1_ref 13111 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 13112 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:52,45,0,0 0/0:.:97:97:0:0%:52,45,0,0 -Example1_ref 13113 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:51,45,0,0 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 13114 . TAGGG T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.5128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:54,43,1,0 0/0:.:98:97:1:1.02%:54,43,1,0 -Example1_ref 13115 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:52,42,0,0 0/0:.:94:94:0:0%:52,42,0,0 -Example1_ref 13116 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 13117 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 13118 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=6.8969E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:85:2:2.3%:46,39,1,1 0/0:.:88:85:2:2.3%:46,39,1,1 -Example1_ref 13119 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:48,38,0,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 13120 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:48,36,0,0 0/0:.:84:84:0:0%:48,36,0,0 -Example1_ref 13121 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:47,37,0,0 0/0:.:84:84:0:0%:47,37,0,0 -Example1_ref 13122 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:47,39,0,0 0/0:.:86:86:0:0%:47,39,0,0 -Example1_ref 13123 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:87:0:0%:50,37,0,0 0/0:.:88:87:0:0%:50,37,0,0 -Example1_ref 13124 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:88:0:0%:49,39,0,0 0/0:.:89:88:0:0%:49,39,0,0 -Example1_ref 13125 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:0:0%:51,39,0,0 0/0:.:91:90:0:0%:51,39,0,0 -Example1_ref 13126 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:51,40,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 13127 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:51,39,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 13128 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:50,41,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 13129 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:48,41,0,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 13130 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:47,41,0,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 13131 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 13132 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:51,40,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 13133 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:53,40,0,0 0/0:.:93:93:0:0%:53,40,0,0 -Example1_ref 13134 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:58,42,0,0 0/0:.:100:100:0:0%:58,42,0,0 -Example1_ref 13135 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 13136 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 13137 . T A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.5127E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:1:1.01%:56,42,0,1 0/0:.:99:98:1:1.01%:56,42,0,1 -Example1_ref 13138 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 13139 . A ATGC . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=7.5132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:94:1:1.05%:53,41,1,0 0/0:.:95:94:1:1.05%:53,41,1,0 -Example1_ref 13140 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 13141 . G T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=7.513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:53,43,1,0 0/0:.:97:96:1:1.03%:53,43,1,0 -Example1_ref 13142 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 13143 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 13144 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 13145 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 13146 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:57,41,0,0 0/0:.:98:98:0:0%:57,41,0,0 -Example1_ref 13147 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:58,41,0,0 0/0:.:99:99:0:0%:58,41,0,0 -Example1_ref 13148 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:60,40,0,0 0/0:.:100:100:0:0%:60,40,0,0 -Example1_ref 13149 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:58,41,0,0 0/0:.:99:99:0:0%:58,41,0,0 -Example1_ref 13150 . G T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.5128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:57,40,1,0 0/0:.:98:97:1:1.02%:57,40,1,0 -Example1_ref 13151 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:59,41,0,0 0/0:.:100:100:0:0%:59,41,0,0 -Example1_ref 13152 . G A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.5126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:99:1:1%:58,41,1,0 0/0:.:101:99:1:1%:58,41,1,0 -Example1_ref 13153 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:61,40,0,0 0/0:.:101:101:0:0%:61,40,0,0 -Example1_ref 13154 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:61,40,0,0 0/0:.:101:101:0:0%:61,40,0,0 -Example1_ref 13155 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:58,37,0,0 0/0:.:95:95:0:0%:58,37,0,0 -Example1_ref 13156 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:62,38,0,0 0/0:.:100:100:0:0%:62,38,0,0 -Example1_ref 13157 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:63,38,0,0 0/0:.:101:101:0:0%:63,38,0,0 -Example1_ref 13158 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:64,38,0,0 0/0:.:102:102:0:0%:64,38,0,0 -Example1_ref 13159 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:64,34,0,0 0/0:.:98:98:0:0%:64,34,0,0 -Example1_ref 13160 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:65,36,0,0 0/0:.:101:101:0:0%:65,36,0,0 -Example1_ref 13161 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:65,33,0,0 0/0:.:98:98:0:0%:65,33,0,0 -Example1_ref 13162 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:64,32,0,0 0/0:.:96:96:0:0%:64,32,0,0 -Example1_ref 13163 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:64,36,0,0 0/0:.:100:100:0:0%:64,36,0,0 -Example1_ref 13164 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:65,38,0,0 0/0:.:103:103:0:0%:65,38,0,0 -Example1_ref 13165 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:66,38,0,0 0/0:.:104:104:0:0%:66,38,0,0 -Example1_ref 13166 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:66,38,0,0 0/0:.:104:104:0:0%:66,38,0,0 -Example1_ref 13167 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:66,36,0,0 0/0:.:102:102:0:0%:66,36,0,0 -Example1_ref 13168 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:64,37,0,0 0/0:.:101:101:0:0%:64,37,0,0 -Example1_ref 13169 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:66,39,0,0 0/0:.:105:105:0:0%:66,39,0,0 -Example1_ref 13170 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:67,40,0,0 0/0:.:107:107:0:0%:67,40,0,0 -Example1_ref 13171 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:66,40,0,0 0/0:.:106:106:0:0%:66,40,0,0 -Example1_ref 13172 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:66,39,0,0 0/0:.:105:105:0:0%:66,39,0,0 -Example1_ref 13173 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:65,40,0,0 0/0:.:105:105:0:0%:65,40,0,0 -Example1_ref 13174 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:64,41,0,0 0/0:.:105:105:0:0%:64,41,0,0 -Example1_ref 13175 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:66,40,0,0 0/0:.:106:106:0:0%:66,40,0,0 -Example1_ref 13176 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:63,42,0,0 0/0:.:105:105:0:0%:63,42,0,0 -Example1_ref 13177 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:64,42,0,0 0/0:.:106:106:0:0%:64,42,0,0 -Example1_ref 13178 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:111:111:0:0%:70,41,0,0 -Example1_ref 13179 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:111:111:0:0%:70,41,0,0 -Example1_ref 13180 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:71,41,0,0 0/0:.:112:112:0:0%:71,41,0,0 -Example1_ref 13181 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:71,42,0,0 0/0:.:113:113:0:0%:71,42,0,0 -Example1_ref 13182 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:71,41,0,0 0/0:.:112:112:0:0%:71,41,0,0 -Example1_ref 13183 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:73,42,0,0 0/0:.:115:115:0:0%:73,42,0,0 -Example1_ref 13184 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:75,40,0,0 0/0:.:115:115:0:0%:75,40,0,0 -Example1_ref 13185 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:78,39,0,0 0/0:.:117:117:0:0%:78,39,0,0 -Example1_ref 13186 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:79,41,0,0 0/0:.:120:120:0:0%:79,41,0,0 -Example1_ref 13187 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:78,40,0,0 0/0:.:118:118:0:0%:78,40,0,0 -Example1_ref 13188 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:79,41,0,0 0/0:.:120:120:0:0%:79,41,0,0 -Example1_ref 13189 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:80,42,0,0 0/0:.:122:122:0:0%:80,42,0,0 -Example1_ref 13190 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:84,40,0,0 0/0:.:124:124:0:0%:84,40,0,0 -Example1_ref 13191 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:85,41,0,0 0/0:.:126:126:0:0%:85,41,0,0 -Example1_ref 13192 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:85,41,0,0 0/0:.:126:126:0:0%:85,41,0,0 -Example1_ref 13193 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:85,42,0,0 0/0:.:127:127:0:0%:85,42,0,0 -Example1_ref 13194 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:85,42,0,0 0/0:.:127:127:0:0%:85,42,0,0 -Example1_ref 13195 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:84,44,0,0 0/0:.:128:128:0:0%:84,44,0,0 -Example1_ref 13196 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:85,44,0,0 0/0:.:129:129:0:0%:85,44,0,0 -Example1_ref 13197 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:85,43,0,0 0/0:.:128:128:0:0%:85,43,0,0 -Example1_ref 13198 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:85,46,0,0 0/0:.:131:131:0:0%:85,46,0,0 -Example1_ref 13199 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:84,44,0,0 0/0:.:129:128:0:0%:84,44,0,0 -Example1_ref 13200 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:86,45,0,0 0/0:.:131:131:0:0%:86,45,0,0 -Example1_ref 13201 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:129:129:0:0%:86,43,0,0 -Example1_ref 13202 . C A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=6.8897E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:127:2:1.55%:85,42,0,2 0/0:.:129:127:2:1.55%:85,42,0,2 -Example1_ref 13203 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:85,45,0,0 0/0:.:130:130:0:0%:85,45,0,0 -Example1_ref 13204 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:87,45,0,0 0/0:.:132:132:0:0%:87,45,0,0 -Example1_ref 13205 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:86,45,0,0 0/0:.:131:131:0:0%:86,45,0,0 -Example1_ref 13206 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:85,45,0,0 0/0:.:130:130:0:0%:85,45,0,0 -Example1_ref 13207 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:130:130:0:0%:87,43,0,0 -Example1_ref 13208 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:85,45,0,0 0/0:.:130:130:0:0%:85,45,0,0 -Example1_ref 13209 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:130:130:0:0%:87,43,0,0 -Example1_ref 13210 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:88,42,0,0 0/0:.:130:130:0:0%:88,42,0,0 -Example1_ref 13211 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:87,41,0,0 0/0:.:128:128:0:0%:87,41,0,0 -Example1_ref 13212 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:88,42,0,0 0/0:.:130:130:0:0%:88,42,0,0 -Example1_ref 13213 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:87,42,0,0 0/0:.:129:129:0:0%:87,42,0,0 -Example1_ref 13214 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:130:130:0:0%:87,43,0,0 -Example1_ref 13215 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:129:129:0:0%:86,43,0,0 -Example1_ref 13216 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:83,41,0,0 0/0:.:124:124:0:0%:83,41,0,0 -Example1_ref 13217 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:83,41,0,0 0/0:.:124:124:0:0%:83,41,0,0 -Example1_ref 13218 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:85,43,0,0 0/0:.:128:128:0:0%:85,43,0,0 -Example1_ref 13219 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:87,44,0,0 0/0:.:131:131:0:0%:87,44,0,0 -Example1_ref 13220 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:89,42,0,0 0/0:.:131:131:0:0%:89,42,0,0 -Example1_ref 13221 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:89,44,0,0 0/0:.:133:133:0:0%:89,44,0,0 -Example1_ref 13222 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:85,42,0,0 0/0:.:127:127:0:0%:85,42,0,0 -Example1_ref 13223 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:89,41,0,0 0/0:.:130:130:0:0%:89,41,0,0 -Example1_ref 13224 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:130:130:0:0%:87,43,0,0 -Example1_ref 13225 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:90,44,0,0 0/0:.:134:134:0:0%:90,44,0,0 -Example1_ref 13226 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:85,43,0,0 0/0:.:128:128:0:0%:85,43,0,0 -Example1_ref 13227 . AT A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:81,43,0,1 0/0:.:125:124:1:0.8%:81,43,0,1 -Example1_ref 13228 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:86,42,0,0 0/0:.:128:128:0:0%:86,42,0,0 -Example1_ref 13229 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:87,42,0,0 0/0:.:129:129:0:0%:87,42,0,0 -Example1_ref 13230 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:88,43,0,0 0/0:.:131:131:0:0%:88,43,0,0 -Example1_ref 13231 . T C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:90,43,1,0 0/0:.:134:133:1:0.75%:90,43,1,0 -Example1_ref 13232 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:89,43,0,0 0/0:.:132:132:0:0%:89,43,0,0 -Example1_ref 13233 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:126:126:0:0%:82,44,0,0 -Example1_ref 13234 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:81,42,0,0 0/0:.:123:123:0:0%:81,42,0,0 -Example1_ref 13235 . G T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:84,41,1,0 0/0:.:126:125:1:0.79%:84,41,1,0 -Example1_ref 13236 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:91,41,0,0 0/0:.:132:132:0:0%:91,41,0,0 -Example1_ref 13237 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:93,38,0,0 0/0:.:131:131:0:0%:93,38,0,0 -Example1_ref 13238 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:94,41,0,0 0/0:.:135:135:0:0%:94,41,0,0 -Example1_ref 13239 . TA T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:91,42,1,0 0/0:.:134:133:1:0.75%:91,42,1,0 -Example1_ref 13240 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:92,41,0,0 0/0:.:133:133:0:0%:92,41,0,0 -Example1_ref 13241 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:92,42,0,0 0/0:.:134:134:0:0%:92,42,0,0 -Example1_ref 13242 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:91,43,0,0 0/0:.:134:134:0:0%:91,43,0,0 -Example1_ref 13243 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:94,41,0,0 0/0:.:135:135:0:0%:94,41,0,0 -Example1_ref 13244 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:91,43,0,0 0/0:.:134:134:0:0%:91,43,0,0 -Example1_ref 13245 . C T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:1:0.72%:93,45,1,0 0/0:.:139:138:1:0.72%:93,45,1,0 -Example1_ref 13246 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:96,44,0,0 0/0:.:140:140:0:0%:96,44,0,0 -Example1_ref 13247 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:97,46,0,0 0/0:.:143:143:0:0%:97,46,0,0 -Example1_ref 13248 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:97,46,0,0 0/0:.:143:143:0:0%:97,46,0,0 -Example1_ref 13249 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:140:140:0:0%:95,45,0,0 -Example1_ref 13250 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:95,46,0,0 0/0:.:141:141:0:0%:95,46,0,0 -Example1_ref 13251 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:96,45,0,0 0/0:.:141:141:0:0%:96,45,0,0 -Example1_ref 13252 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:140:140:0:0%:95,45,0,0 -Example1_ref 13253 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:89,48,0,0 0/0:.:137:137:0:0%:89,48,0,0 -Example1_ref 13254 . G T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.5087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:95,48,1,0 0/0:.:144:143:1:0.69%:95,48,1,0 -Example1_ref 13255 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:104,47,0,0 0/0:.:151:151:0:0%:104,47,0,0 -Example1_ref 13256 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:101,45,0,0 0/0:.:146:146:0:0%:101,45,0,0 -Example1_ref 13257 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:102,50,0,0 0/0:.:152:152:0:0%:102,50,0,0 -Example1_ref 13258 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:104,50,0,0 0/0:.:154:154:0:0%:104,50,0,0 -Example1_ref 13259 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:105,51,0,0 0/0:.:156:156:0:0%:105,51,0,0 -Example1_ref 13260 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:102,49,0,0 0/0:.:151:151:0:0%:102,49,0,0 -Example1_ref 13261 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:105,50,0,0 0/0:.:155:155:0:0%:105,50,0,0 -Example1_ref 13262 . A AC . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:102,51,1,0 0/0:.:154:153:1:0.65%:102,51,1,0 -Example1_ref 13263 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:102,50,0,0 0/0:.:152:152:0:0%:102,50,0,0 -Example1_ref 13264 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:104,51,0,0 0/0:.:155:155:0:0%:104,51,0,0 -Example1_ref 13265 . G GTCT . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:100,49,1,0 0/0:.:150:149:1:0.67%:100,49,1,0 -Example1_ref 13266 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:103,47,0,0 0/0:.:150:150:0:0%:103,47,0,0 -Example1_ref 13267 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:102,51,0,0 0/0:.:153:153:0:0%:102,51,0,0 -Example1_ref 13268 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:103,51,0,0 0/0:.:154:154:0:0%:103,51,0,0 -Example1_ref 13269 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:102,51,0,0 0/0:.:153:153:0:0%:102,51,0,0 -Example1_ref 13270 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:102,52,0,0 0/0:.:154:154:0:0%:102,52,0,0 -Example1_ref 13271 . C A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:97,50,0,1 0/0:.:148:147:1:0.68%:97,50,0,1 -Example1_ref 13272 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:94,49,0,0 0/0:.:143:143:0:0%:94,49,0,0 -Example1_ref 13273 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:94,50,0,0 0/0:.:144:144:0:0%:94,50,0,0 -Example1_ref 13274 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:145:145:0:0%:93,52,0,0 -Example1_ref 13275 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:145:145:0:0%:93,52,0,0 -Example1_ref 13276 . C T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:92,49,1,0 0/0:.:142:141:1:0.7%:92,49,1,0 -Example1_ref 13277 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:92,52,0,0 0/0:.:144:144:0:0%:92,52,0,0 -Example1_ref 13278 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:143:143:0:0%:92,51,0,0 -Example1_ref 13279 . G T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:90,49,1,0 0/0:.:140:139:1:0.71%:90,49,1,0 -Example1_ref 13280 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:89,52,0,0 0/0:.:141:141:0:0%:89,52,0,0 -Example1_ref 13281 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:140:140:0:0%:90,50,0,0 -Example1_ref 13282 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:90,51,0,0 0/0:.:141:141:0:0%:90,51,0,0 -Example1_ref 13283 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:138:138:0:0%:86,52,0,0 -Example1_ref 13284 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:85,54,0,0 0/0:.:139:139:0:0%:85,54,0,0 -Example1_ref 13285 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:139:139:0:0%:87,52,0,0 -Example1_ref 13286 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:88,54,0,0 0/0:.:142:142:0:0%:88,54,0,0 -Example1_ref 13287 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:88,50,0,0 0/0:.:138:138:0:0%:88,50,0,0 -Example1_ref 13288 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:139:139:0:0%:87,52,0,0 -Example1_ref 13289 . G T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.5094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:82,51,1,0 0/0:.:134:133:1:0.75%:82,51,1,0 -Example1_ref 13290 . C A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:90,50,0,1 0/0:.:141:140:1:0.71%:90,50,0,1 -Example1_ref 13291 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:139:139:0:0%:87,52,0,0 -Example1_ref 13292 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:89,53,0,0 0/0:.:142:142:0:0%:89,53,0,0 -Example1_ref 13293 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:91,53,0,0 0/0:.:144:144:0:0%:91,53,0,0 -Example1_ref 13294 . C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:161:161:0:0%:109,52,0,0 -Example1_ref 13295 . T A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:107,52,1,0 0/0:.:160:159:1:0.62%:107,52,1,0 -Example1_ref 13296 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:115,54,0,0 0/0:.:169:169:0:0%:115,54,0,0 -Example1_ref 13297 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:114,56,0,0 0/0:.:170:170:0:0%:114,56,0,0 -Example1_ref 13298 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:122,56,0,0 0/0:.:178:178:0:0%:122,56,0,0 -Example1_ref 13299 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:123,56,0,0 0/0:.:179:179:0:0%:123,56,0,0 -Example1_ref 13300 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:124,57,0,0 0/0:.:181:181:0:0%:124,57,0,0 -Example1_ref 13301 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:125,56,0,0 0/0:.:181:181:0:0%:125,56,0,0 -Example1_ref 13302 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:121,57,0,0 0/0:.:178:178:0:0%:121,57,0,0 -Example1_ref 13303 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:122,51,0,0 0/0:.:173:173:0:0%:122,51,0,0 -Example1_ref 13304 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:119,55,0,0 0/0:.:174:174:0:0%:119,55,0,0 -Example1_ref 13305 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:119,54,0,0 0/0:.:173:173:0:0%:119,54,0,0 -Example1_ref 13306 . A C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:122,63,1,0 0/0:.:186:185:1:0.54%:122,63,1,0 -Example1_ref 13307 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:123,66,0,0 0/0:.:189:189:0:0%:123,66,0,0 -Example1_ref 13308 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:122,64,0,0 0/0:.:186:186:0:0%:122,64,0,0 -Example1_ref 13309 . T C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:121,65,0,1 0/0:.:187:186:1:0.53%:121,65,0,1 -Example1_ref 13310 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:122,69,0,0 0/0:.:191:191:0:0%:122,69,0,0 -Example1_ref 13311 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:122,65,0,0 0/0:.:187:187:0:0%:122,65,0,0 -Example1_ref 13312 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:119,68,0,0 0/0:.:187:187:0:0%:119,68,0,0 -Example1_ref 13313 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:119,68,0,0 0/0:.:187:187:0:0%:119,68,0,0 -Example1_ref 13314 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:119,67,0,0 0/0:.:186:186:0:0%:119,67,0,0 -Example1_ref 13315 . G T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:121,64,0,1 0/0:.:186:185:1:0.54%:121,64,0,1 -Example1_ref 13316 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:115,70,0,0 0/0:.:185:185:0:0%:115,70,0,0 -Example1_ref 13317 . A C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:119,65,0,1 0/0:.:185:184:1:0.54%:119,65,0,1 -Example1_ref 13318 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:122,68,0,0 0/0:.:190:190:0:0%:122,68,0,0 -Example1_ref 13319 . C CGGAGA . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.5068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:118,65,0,1 0/0:.:184:183:1:0.54%:118,65,0,1 -Example1_ref 13320 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:121,69,0,0 0/0:.:190:190:0:0%:121,69,0,0 -Example1_ref 13321 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:143,71,0,0 0/0:.:214:214:0:0%:143,71,0,0 -Example1_ref 13322 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:145,80,0,0 0/0:.:225:225:0:0%:145,80,0,0 -Example1_ref 13323 . T G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.5057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:143,76,0,1 0/0:.:220:219:1:0.45%:143,76,0,1 -Example1_ref 13324 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:141,79,0,0 0/0:.:220:220:0:0%:141,79,0,0 -Example1_ref 13325 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:136,80,0,0 0/0:.:216:216:0:0%:136,80,0,0 -Example1_ref 13326 . TGA T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:141,80,0,1 0/0:.:223:221:1:0.45%:141,80,0,1 -Example1_ref 13327 . G A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:223:1:0.45%:139,84,0,1 0/0:.:225:223:1:0.45%:139,84,0,1 -Example1_ref 13328 . A AG . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:226:1:0.44%:141,85,0,1 0/0:.:228:226:1:0.44%:141,85,0,1 -Example1_ref 13329 . G T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:140,85,1,0 0/0:.:226:225:1:0.44%:140,85,1,0 -Example1_ref 13330 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:139,85,0,0 0/0:.:224:224:0:0%:139,85,0,0 -Example1_ref 13331 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:142,79,0,0 0/0:.:221:221:0:0%:142,79,0,0 -Example1_ref 13332 . A AC . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=7.5055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:1:0.44%:140,88,0,1 0/0:.:229:228:1:0.44%:140,88,0,1 -Example1_ref 13333 . A C . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:139,92,0,1 0/0:.:232:231:1:0.43%:139,92,0,1 -Example1_ref 13334 . T A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:233:1:0.43%:142,91,0,1 0/0:.:235:233:1:0.43%:142,91,0,1 -Example1_ref 13335 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:234:234:0:0%:140,94,0,0 -Example1_ref 13336 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:144,94,0,0 0/0:.:238:238:0:0%:144,94,0,0 -Example1_ref 13337 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:148,99,0,0 0/0:.:247:247:0:0%:148,99,0,0 -Example1_ref 13338 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:149,98,0,0 0/0:.:247:247:0:0%:149,98,0,0 -Example1_ref 13339 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:149,97,0,0 0/0:.:246:246:0:0%:149,97,0,0 -Example1_ref 13340 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:150,98,0,0 0/0:.:248:248:0:0%:150,98,0,0 -Example1_ref 13341 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:149,100,0,0 0/0:.:249:249:0:0%:149,100,0,0 -Example1_ref 13342 . T C . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:251:1:0.4%:154,97,0,1 0/0:.:254:251:1:0.4%:154,97,0,1 -Example1_ref 13343 . G . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:157,100,0,0 0/0:.:257:257:0:0%:157,100,0,0 -Example1_ref 13344 . G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:160,100,0,0 0/0:.:260:260:0:0%:160,100,0,0 -Example1_ref 13345 . T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:163,103,0,0 0/0:.:266:266:0:0%:163,103,0,0 -Example1_ref 13346 . G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:165,102,0,0 0/0:.:267:267:0:0%:165,102,0,0 -Example1_ref 13347 . T A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:164,102,1,0 0/0:.:267:266:1:0.37%:164,102,1,0 -Example1_ref 13348 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:163,104,0,0 0/0:.:267:267:0:0%:163,104,0,0 -Example1_ref 13349 . T TAAGAGACA . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:161,101,0,1 0/0:.:263:262:1:0.38%:161,101,0,1 -Example1_ref 13350 . C . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:161,103,0,0 0/0:.:264:264:0:0%:161,103,0,0 -Example1_ref 13351 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:160,103,0,0 0/0:.:263:263:0:0%:160,103,0,0 -Example1_ref 13352 . C . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:163,101,0,0 0/0:.:264:264:0:0%:163,101,0,0 -Example1_ref 13353 . T . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:163,101,0,0 0/0:.:264:264:0:0%:163,101,0,0 -Example1_ref 13354 . T . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:161,103,0,0 0/0:.:264:264:0:0%:161,103,0,0 -Example1_ref 13355 . G . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:162,103,0,0 0/0:.:265:265:0:0%:162,103,0,0 -Example1_ref 13356 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:160,107,0,0 0/0:.:267:267:0:0%:160,107,0,0 -Example1_ref 13357 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:165,108,0,0 0/0:.:273:273:0:0%:165,108,0,0 -Example1_ref 13358 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:172,107,0,0 0/0:.:279:279:0:0%:172,107,0,0 -Example1_ref 13359 . T . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:173,109,0,0 0/0:.:282:282:0:0%:173,109,0,0 -Example1_ref 13360 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:175,110,0,0 0/0:.:285:285:0:0%:175,110,0,0 -Example1_ref 13361 . T . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:174,112,0,0 0/0:.:286:286:0:0%:174,112,0,0 -Example1_ref 13362 . A AG . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:174,114,0,1 0/0:.:289:288:1:0.35%:174,114,0,1 -Example1_ref 13363 . C . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:175,116,0,0 0/0:.:291:291:0:0%:175,116,0,0 -Example1_ref 13364 . AT A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:292:1:0.34%:178,114,1,0 0/0:.:294:292:1:0.34%:178,114,1,0 -Example1_ref 13365 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:177,111,0,0 0/0:.:288:288:0:0%:177,111,0,0 -Example1_ref 13366 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:178,120,0,0 0/0:.:298:298:0:0%:178,120,0,0 -Example1_ref 13367 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:178,120,0,0 0/0:.:298:298:0:0%:178,120,0,0 -Example1_ref 13368 . G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:171,124,0,0 0/0:.:295:295:0:0%:171,124,0,0 -Example1_ref 13369 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:175,127,0,0 0/0:.:302:302:0:0%:175,127,0,0 -Example1_ref 13370 . G T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:172,130,1,0 0/0:.:303:302:1:0.33%:172,130,1,0 -Example1_ref 13371 . A G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:170,130,1,0 0/0:.:301:300:1:0.33%:170,130,1,0 -Example1_ref 13372 . C . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:172,124,0,0 0/0:.:296:296:0:0%:172,124,0,0 -Example1_ref 13373 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:165,127,0,0 0/0:.:292:292:0:0%:165,127,0,0 -Example1_ref 13374 . G . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:166,125,0,0 0/0:.:291:291:0:0%:166,125,0,0 -Example1_ref 13375 . C . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:168,128,0,0 0/0:.:296:296:0:0%:168,128,0,0 -Example1_ref 13376 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:166,130,0,0 0/0:.:296:296:0:0%:166,130,0,0 -Example1_ref 13377 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:167,130,0,0 0/0:.:297:297:0:0%:167,130,0,0 -Example1_ref 13378 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:171,131,0,0 0/0:.:302:302:0:0%:171,131,0,0 -Example1_ref 13379 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:170,131,0,0 0/0:.:301:301:0:0%:170,131,0,0 -Example1_ref 13380 . T . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:166,131,0,0 0/0:.:297:297:0:0%:166,131,0,0 -Example1_ref 13381 . G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:165,130,0,0 0/0:.:295:295:0:0%:165,130,0,0 -Example1_ref 13382 . G A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:165,131,1,0 0/0:.:297:296:1:0.34%:165,131,1,0 -Example1_ref 13383 . A G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:169,131,0,1 0/0:.:301:300:1:0.33%:169,131,0,1 -Example1_ref 13384 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:168,129,0,0 0/0:.:297:297:0:0%:168,129,0,0 -Example1_ref 13385 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:167,129,0,0 0/0:.:296:296:0:0%:167,129,0,0 -Example1_ref 13386 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:169,130,0,0 0/0:.:299:299:0:0%:169,130,0,0 -Example1_ref 13387 . A G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:168,124,0,1 0/0:.:293:292:1:0.34%:168,124,0,1 -Example1_ref 13388 . G . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:168,124,0,0 0/0:.:292:292:0:0%:168,124,0,0 -Example1_ref 13389 . C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:166,126,0,0 0/0:.:292:292:0:0%:166,126,0,0 -Example1_ref 13390 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:166,130,0,0 0/0:.:296:296:0:0%:166,130,0,0 -Example1_ref 13391 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:166,130,0,0 0/0:.:296:296:0:0%:166,130,0,0 -Example1_ref 13392 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:162,130,0,0 0/0:.:292:292:0:0%:162,130,0,0 -Example1_ref 13393 . T C . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:163,128,1,0 0/0:.:292:291:1:0.34%:163,128,1,0 -Example1_ref 13394 . G . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:164,126,0,0 0/0:.:290:290:0:0%:164,126,0,0 -Example1_ref 13395 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:165,130,0,0 0/0:.:295:295:0:0%:165,130,0,0 -Example1_ref 13396 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:0:0%:167,126,0,0 0/0:.:294:293:0:0%:167,126,0,0 -Example1_ref 13397 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:165,135,0,0 0/0:.:300:300:0:0%:165,135,0,0 -Example1_ref 13398 . G . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:165,135,0,0 0/0:.:300:300:0:0%:165,135,0,0 -Example1_ref 13399 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:162,135,0,0 0/0:.:297:297:0:0%:162,135,0,0 -Example1_ref 13400 . A C . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:163,134,0,1 0/0:.:298:297:1:0.34%:163,134,0,1 -Example1_ref 13401 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:165,136,0,0 0/0:.:301:301:0:0%:165,136,0,0 -Example1_ref 13402 . A T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:166,138,1,0 0/0:.:305:304:1:0.33%:166,138,1,0 -Example1_ref 13403 . C . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:165,134,0,0 0/0:.:299:299:0:0%:165,134,0,0 -Example1_ref 13404 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:165,126,0,0 0/0:.:291:291:0:0%:165,126,0,0 -Example1_ref 13405 . A G . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:165,132,0,1 0/0:.:298:297:1:0.34%:165,132,0,1 -Example1_ref 13406 . G . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:162,133,0,0 0/0:.:295:295:0:0%:162,133,0,0 -Example1_ref 13407 . C A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:163,124,0,1 0/0:.:288:287:1:0.35%:163,124,0,1 -Example1_ref 13408 . C . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:165,131,0,0 0/0:.:296:296:0:0%:165,131,0,0 -Example1_ref 13409 . T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:162,128,0,0 0/0:.:290:290:0:0%:162,128,0,0 -Example1_ref 13410 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:165,135,0,0 0/0:.:300:300:0:0%:165,135,0,0 -Example1_ref 13411 . C G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:162,133,0,1 0/0:.:296:295:1:0.34%:162,133,0,1 -Example1_ref 13412 . A AT . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:163,134,0,1 0/0:.:298:297:1:0.34%:163,134,0,1 -Example1_ref 13413 . T A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:168,135,0,1 0/0:.:304:303:1:0.33%:168,135,0,1 -Example1_ref 13414 . T C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:170,134,1,0 0/0:.:305:304:1:0.33%:170,134,1,0 -Example1_ref 13415 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:171,135,0,0 0/0:.:306:306:0:0%:171,135,0,0 -Example1_ref 13416 . C . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:172,139,0,0 0/0:.:311:311:0:0%:172,139,0,0 -Example1_ref 13417 . T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:172,141,0,0 0/0:.:313:313:0:0%:172,141,0,0 -Example1_ref 13418 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:169,142,0,0 0/0:.:311:311:0:0%:169,142,0,0 -Example1_ref 13419 . G . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:169,142,0,0 0/0:.:311:311:0:0%:169,142,0,0 -Example1_ref 13420 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:164,148,0,0 0/0:.:312:312:0:0%:164,148,0,0 -Example1_ref 13421 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:168,142,0,0 0/0:.:310:310:0:0%:168,142,0,0 -Example1_ref 13422 . A G . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:309:1:0.32%:167,142,0,1 0/0:.:311:309:1:0.32%:167,142,0,1 -Example1_ref 13423 . C A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=6.8811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:306:2:0.65%:170,136,0,2 0/0:.:308:306:2:0.65%:170,136,0,2 -Example1_ref 13424 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:168,142,0,0 0/0:.:310:310:0:0%:168,142,0,0 -Example1_ref 13425 . T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:0:0%:169,147,0,0 0/0:.:317:316:0:0%:169,147,0,0 -Example1_ref 13426 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:167,147,0,0 0/0:.:314:314:0:0%:167,147,0,0 -Example1_ref 13427 . T . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:166,150,0,0 0/0:.:316:316:0:0%:166,150,0,0 -Example1_ref 13428 . C . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:167,147,0,0 0/0:.:314:314:0:0%:167,147,0,0 -Example1_ref 13429 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:168,155,0,0 0/0:.:323:323:0:0%:168,155,0,0 -Example1_ref 13430 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:169,153,0,0 0/0:.:322:322:0:0%:169,153,0,0 -Example1_ref 13431 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:319:0:0%:166,153,0,0 0/0:.:320:319:0:0%:166,153,0,0 -Example1_ref 13432 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:169,153,0,0 0/0:.:322:322:0:0%:169,153,0,0 -Example1_ref 13433 . G . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:168,150,0,0 0/0:.:318:318:0:0%:168,150,0,0 -Example1_ref 13434 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:168,146,0,0 0/0:.:314:314:0:0%:168,146,0,0 -Example1_ref 13435 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:165,144,0,0 0/0:.:309:309:0:0%:165,144,0,0 -Example1_ref 13436 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:164,150,0,0 0/0:.:314:314:0:0%:164,150,0,0 -Example1_ref 13437 . G . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:164,151,0,0 0/0:.:315:315:0:0%:164,151,0,0 -Example1_ref 13438 . T TC . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:164,151,1,0 0/0:.:316:315:1:0.32%:164,151,1,0 -Example1_ref 13439 . T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:165,148,0,0 0/0:.:313:313:0:0%:165,148,0,0 -Example1_ref 13440 . G T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:1:0.32%:165,151,1,0 0/0:.:317:316:1:0.32%:165,151,1,0 -Example1_ref 13441 . T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:167,150,0,0 0/0:.:317:317:0:0%:167,150,0,0 -Example1_ref 13442 . T . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:166,150,0,0 0/0:.:316:316:0:0%:166,150,0,0 -Example1_ref 13443 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:166,149,0,0 0/0:.:315:315:0:0%:166,149,0,0 -Example1_ref 13444 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:154,150,0,0 0/0:.:304:304:0:0%:154,150,0,0 -Example1_ref 13445 . G . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:153,150,0,0 0/0:.:303:303:0:0%:153,150,0,0 -Example1_ref 13446 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:156,149,0,0 0/0:.:305:305:0:0%:156,149,0,0 -Example1_ref 13447 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:156,148,0,0 0/0:.:304:304:0:0%:156,148,0,0 -Example1_ref 13448 . G . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:157,150,0,0 0/0:.:307:307:0:0%:157,150,0,0 -Example1_ref 13449 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:155,148,0,0 0/0:.:303:303:0:0%:155,148,0,0 -Example1_ref 13450 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:151,149,0,0 0/0:.:300:300:0:0%:151,149,0,0 -Example1_ref 13451 . A . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:154,156,0,0 0/0:.:310:310:0:0%:154,156,0,0 -Example1_ref 13452 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:156,150,0,0 0/0:.:306:306:0:0%:156,150,0,0 -Example1_ref 13453 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:308:308:0:0%:153,155,0,0 -Example1_ref 13454 . G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:153,153,0,0 0/0:.:306:306:0:0%:153,153,0,0 -Example1_ref 13455 . C . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:154,153,0,0 0/0:.:307:307:0:0%:154,153,0,0 -Example1_ref 13456 . AT A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:152,155,0,1 0/0:.:308:307:1:0.32%:152,155,0,1 -Example1_ref 13457 . T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:154,152,0,0 0/0:.:307:306:0:0%:154,152,0,0 -Example1_ref 13458 . C . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:151,155,0,0 0/0:.:306:306:0:0%:151,155,0,0 -Example1_ref 13459 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:151,154,0,0 0/0:.:305:305:0:0%:151,154,0,0 -Example1_ref 13460 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:153,153,0,0 0/0:.:306:306:0:0%:153,153,0,0 -Example1_ref 13461 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:152,156,0,0 0/0:.:308:308:0:0%:152,156,0,0 -Example1_ref 13462 . T G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=6.8811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:306:2:0.65%:153,153,1,1 0/0:.:308:306:2:0.65%:153,153,1,1 -Example1_ref 13463 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:308:308:0:0%:153,155,0,0 -Example1_ref 13464 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:151,157,0,0 0/0:.:308:308:0:0%:151,157,0,0 -Example1_ref 13465 . A T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:150,159,1,0 0/0:.:310:309:1:0.32%:150,159,1,0 -Example1_ref 13466 . C A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:151,150,0,1 0/0:.:302:301:1:0.33%:151,150,0,1 -Example1_ref 13467 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:151,158,0,0 0/0:.:309:309:0:0%:151,158,0,0 -Example1_ref 13468 . TA T . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:153,162,1,0 0/0:.:316:315:1:0.32%:153,162,1,0 -Example1_ref 13469 . A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:155,162,0,0 0/0:.:317:317:0:0%:155,162,0,0 -Example1_ref 13470 . A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:154,163,0,0 0/0:.:317:317:0:0%:154,163,0,0 -Example1_ref 13471 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:156,159,0,0 0/0:.:315:315:0:0%:156,159,0,0 -Example1_ref 13472 . C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:159,162,0,0 0/0:.:321:321:0:0%:159,162,0,0 -Example1_ref 13473 . T . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:158,161,0,0 0/0:.:319:319:0:0%:158,161,0,0 -Example1_ref 13474 . G C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:159,161,1,0 0/0:.:321:320:1:0.31%:159,161,1,0 -Example1_ref 13475 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:162,160,0,0 0/0:.:322:322:0:0%:162,160,0,0 -Example1_ref 13476 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:162,162,0,0 0/0:.:324:324:0:0%:162,162,0,0 -Example1_ref 13477 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:161,165,0,0 0/0:.:326:326:0:0%:161,165,0,0 -Example1_ref 13478 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:154,161,0,0 0/0:.:315:315:0:0%:154,161,0,0 -Example1_ref 13479 . A ACCTGTCT . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:161,162,1,0 0/0:.:324:323:1:0.31%:161,162,1,0 -Example1_ref 13480 . C . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:158,158,0,0 0/0:.:316:316:0:0%:158,158,0,0 -Example1_ref 13481 . T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:0:0%:159,161,0,0 0/0:.:321:320:0:0%:159,161,0,0 -Example1_ref 13482 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:318:0:0%:158,160,0,0 0/0:.:320:318:0:0%:158,160,0,0 -Example1_ref 13483 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:312:0:0%:153,159,0,0 0/0:.:314:312:0:0%:153,159,0,0 -Example1_ref 13484 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:144,159,0,0 0/0:.:304:303:0:0%:144,159,0,0 -Example1_ref 13485 . C . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:141,159,0,0 0/0:.:300:300:0:0%:141,159,0,0 -Example1_ref 13486 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:139,159,0,0 0/0:.:298:298:0:0%:139,159,0,0 -Example1_ref 13487 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:143,158,0,0 0/0:.:301:301:0:0%:143,158,0,0 -Example1_ref 13488 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:131,158,0,0 0/0:.:289:289:0:0%:131,158,0,0 -Example1_ref 13489 . C . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:0:0%:133,154,0,0 0/0:.:288:287:0:0%:133,154,0,0 -Example1_ref 13490 . T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:0:0%:135,153,0,0 0/0:.:289:288:0:0%:135,153,0,0 -Example1_ref 13491 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:0:0%:134,156,0,0 0/0:.:291:290:0:0%:134,156,0,0 -Example1_ref 13492 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:0:0%:133,155,0,0 0/0:.:289:288:0:0%:133,155,0,0 -Example1_ref 13493 . G T . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:282:1:0.35%:129,153,1,0 0/0:.:285:282:1:0.35%:129,153,1,0 -Example1_ref 13494 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:0:0%:131,154,0,0 0/0:.:286:285:0:0%:131,154,0,0 -Example1_ref 13495 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:280:0:0%:126,154,0,0 0/0:.:283:280:0:0%:126,154,0,0 -Example1_ref 13496 . A ATTT . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:252:1:0.4%:122,130,1,0 0/0:.:254:252:1:0.4%:122,130,1,0 -Example1_ref 13497 . G A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:258:1:0.39%:125,133,0,1 0/0:.:260:258:1:0.39%:125,133,0,1 -Example1_ref 13498 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:0:0%:128,135,0,0 0/0:.:264:263:0:0%:128,135,0,0 -Example1_ref 13499 . C CAA . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:265:1:0.38%:128,137,1,0 0/0:.:266:265:1:0.38%:128,137,1,0 -Example1_ref 13500 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:0:0%:129,132,0,0 0/0:.:262:261:0:0%:129,132,0,0 -Example1_ref 13501 . T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:130,137,0,0 0/0:.:267:267:0:0%:130,137,0,0 -Example1_ref 13502 . G . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:127,137,0,0 0/0:.:264:264:0:0%:127,137,0,0 -Example1_ref 13503 . A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:130,140,0,0 0/0:.:270:270:0:0%:130,140,0,0 -Example1_ref 13504 . T C . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:265:1:0.38%:126,139,1,0 0/0:.:266:265:1:0.38%:126,139,1,0 -Example1_ref 13505 . C . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:126,138,0,0 0/0:.:264:264:0:0%:126,138,0,0 -Example1_ref 13506 . T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:127,136,0,0 0/0:.:263:263:0:0%:127,136,0,0 -Example1_ref 13507 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:128,135,0,0 0/0:.:263:263:0:0%:128,135,0,0 -Example1_ref 13508 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:125,132,0,0 0/0:.:257:257:0:0%:125,132,0,0 -Example1_ref 13509 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:123,136,0,0 0/0:.:259:259:0:0%:123,136,0,0 -Example1_ref 13510 . G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:105,137,0,0 0/0:.:242:242:0:0%:105,137,0,0 -Example1_ref 13511 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:107,132,0,0 0/0:.:239:239:0:0%:107,132,0,0 -Example1_ref 13512 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:102,132,0,0 0/0:.:234:234:0:0%:102,132,0,0 -Example1_ref 13513 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:103,132,0,0 0/0:.:235:235:0:0%:103,132,0,0 -Example1_ref 13514 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:103,131,0,0 0/0:.:234:234:0:0%:103,131,0,0 -Example1_ref 13515 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:103,130,0,0 0/0:.:233:233:0:0%:103,130,0,0 -Example1_ref 13516 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:231:231:0:0%:103,128,0,0 -Example1_ref 13517 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:103,120,0,0 0/0:.:223:223:0:0%:103,120,0,0 -Example1_ref 13518 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:98,118,0,0 0/0:.:216:216:0:0%:98,118,0,0 -Example1_ref 13519 . T G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:94,119,1,0 0/0:.:214:213:1:0.47%:94,119,1,0 -Example1_ref 13520 . C A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:92,112,1,0 0/0:.:205:204:1:0.49%:92,112,1,0 -Example1_ref 13521 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:95,113,0,0 0/0:.:208:208:0:0%:95,113,0,0 -Example1_ref 13522 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:91,116,0,0 0/0:.:207:207:0:0%:91,116,0,0 -Example1_ref 13523 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:91,112,0,0 0/0:.:203:203:0:0%:91,112,0,0 -Example1_ref 13524 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:90,112,0,0 0/0:.:202:202:0:0%:90,112,0,0 -Example1_ref 13525 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:92,112,0,0 0/0:.:204:204:0:0%:92,112,0,0 -Example1_ref 13526 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:86,113,0,0 0/0:.:199:199:0:0%:86,113,0,0 -Example1_ref 13527 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:86,110,0,0 0/0:.:196:196:0:0%:86,110,0,0 -Example1_ref 13528 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:86,111,0,0 0/0:.:197:197:0:0%:86,111,0,0 -Example1_ref 13529 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:84,111,0,0 0/0:.:195:195:0:0%:84,111,0,0 -Example1_ref 13530 . A T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.5064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:86,108,0,1 0/0:.:195:194:1:0.51%:86,108,0,1 -Example1_ref 13531 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:83,110,0,0 0/0:.:193:193:0:0%:83,110,0,0 -Example1_ref 13532 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:83,111,0,0 0/0:.:194:194:0:0%:83,111,0,0 -Example1_ref 13533 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:81,112,0,0 0/0:.:193:193:0:0%:81,112,0,0 -Example1_ref 13534 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:187:187:0:0%:77,110,0,0 -Example1_ref 13535 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:187:187:0:0%:77,110,0,0 -Example1_ref 13536 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:187:187:0:0%:77,110,0,0 -Example1_ref 13537 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:76,110,0,0 0/0:.:186:186:0:0%:76,110,0,0 -Example1_ref 13538 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:72,110,0,0 0/0:.:182:182:0:0%:72,110,0,0 -Example1_ref 13539 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:75,110,0,0 0/0:.:186:185:0:0%:75,110,0,0 -Example1_ref 13540 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:0:0%:73,110,0,0 0/0:.:184:183:0:0%:73,110,0,0 -Example1_ref 13541 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:67,110,0,0 0/0:.:177:177:0:0%:67,110,0,0 -Example1_ref 13542 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:70,111,0,0 0/0:.:181:181:0:0%:70,111,0,0 -Example1_ref 13543 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:71,105,0,0 0/0:.:176:176:0:0%:71,105,0,0 -Example1_ref 13544 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:70,106,0,0 0/0:.:176:176:0:0%:70,106,0,0 -Example1_ref 13545 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:69,107,0,0 0/0:.:176:176:0:0%:69,107,0,0 -Example1_ref 13546 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:68,105,0,0 0/0:.:173:173:0:0%:68,105,0,0 -Example1_ref 13547 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:67,106,0,0 0/0:.:173:173:0:0%:67,106,0,0 -Example1_ref 13548 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:65,106,0,0 0/0:.:171:171:0:0%:65,106,0,0 -Example1_ref 13549 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:63,102,0,0 0/0:.:165:165:0:0%:63,102,0,0 -Example1_ref 13550 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:64,103,0,0 0/0:.:167:167:0:0%:64,103,0,0 -Example1_ref 13551 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:64,102,0,0 0/0:.:166:166:0:0%:64,102,0,0 -Example1_ref 13552 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:64,101,0,0 0/0:.:165:165:0:0%:64,101,0,0 -Example1_ref 13553 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:62,101,0,0 0/0:.:163:163:0:0%:62,101,0,0 -Example1_ref 13554 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:60,104,0,0 0/0:.:164:164:0:0%:60,104,0,0 -Example1_ref 13555 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:59,104,0,0 0/0:.:163:163:0:0%:59,104,0,0 -Example1_ref 13556 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:59,97,0,0 0/0:.:156:156:0:0%:59,97,0,0 -Example1_ref 13557 . A C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:61,97,1,0 0/0:.:159:158:1:0.63%:61,97,1,0 -Example1_ref 13558 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:152:152:0:0%:62,90,0,0 -Example1_ref 13559 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:64,87,0,0 0/0:.:151:151:0:0%:64,87,0,0 -Example1_ref 13560 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:62,87,0,0 0/0:.:149:149:0:0%:62,87,0,0 -Example1_ref 13561 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:150:150:0:0%:62,88,0,0 -Example1_ref 13562 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 13563 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:150:150:0:0%:62,88,0,0 -Example1_ref 13564 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:60,88,0,0 0/0:.:148:148:0:0%:60,88,0,0 -Example1_ref 13565 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:61,91,0,0 0/0:.:152:152:0:0%:61,91,0,0 -Example1_ref 13566 . T C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:63,92,1,0 0/0:.:156:155:1:0.64%:63,92,1,0 -Example1_ref 13567 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:62,93,0,0 0/0:.:155:155:0:0%:62,93,0,0 -Example1_ref 13568 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 13569 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:60,86,0,0 0/0:.:146:146:0:0%:60,86,0,0 -Example1_ref 13570 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 13571 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:145:145:0:0%:60,85,0,0 -Example1_ref 13572 . G T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:58,89,1,0 0/0:.:148:147:1:0.68%:58,89,1,0 -Example1_ref 13573 . A T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:57,88,0,1 0/0:.:146:145:1:0.68%:57,88,0,1 -Example1_ref 13574 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:60,88,0,0 0/0:.:148:148:0:0%:60,88,0,0 -Example1_ref 13575 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:61,85,0,0 0/0:.:146:146:0:0%:61,85,0,0 -Example1_ref 13576 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:62,86,0,0 0/0:.:148:148:0:0%:62,86,0,0 -Example1_ref 13577 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:62,85,0,0 0/0:.:147:147:0:0%:62,85,0,0 -Example1_ref 13578 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:61,86,0,0 0/0:.:147:147:0:0%:61,86,0,0 -Example1_ref 13579 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:145:145:0:0%:60,85,0,0 -Example1_ref 13580 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:60,84,0,0 0/0:.:144:144:0:0%:60,84,0,0 -Example1_ref 13581 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:60,82,0,0 0/0:.:142:142:0:0%:60,82,0,0 -Example1_ref 13582 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:61,83,0,0 0/0:.:144:144:0:0%:61,83,0,0 -Example1_ref 13583 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:61,84,0,0 0/0:.:145:145:0:0%:61,84,0,0 -Example1_ref 13584 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:60,84,0,0 0/0:.:144:144:0:0%:60,84,0,0 -Example1_ref 13585 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:57,83,0,0 0/0:.:140:140:0:0%:57,83,0,0 -Example1_ref 13586 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:60,77,0,0 0/0:.:137:137:0:0%:60,77,0,0 -Example1_ref 13587 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:59,78,0,0 0/0:.:137:137:0:0%:59,78,0,0 -Example1_ref 13588 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 13589 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:135:135:0:0%:60,75,0,0 -Example1_ref 13590 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:58,71,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 13591 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:128:128:0:0%:57,71,0,0 -Example1_ref 13592 . C A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:55,71,0,1 0/0:.:127:126:1:0.79%:55,71,0,1 -Example1_ref 13593 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:55,74,0,0 0/0:.:129:129:0:0%:55,74,0,0 -Example1_ref 13594 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:58,75,0,0 0/0:.:133:133:0:0%:58,75,0,0 -Example1_ref 13595 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:130:130:0:0%:58,72,0,0 -Example1_ref 13596 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:130:130:0:0%:58,72,0,0 -Example1_ref 13597 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:133:133:0:0%:59,74,0,0 -Example1_ref 13598 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:57,74,0,0 0/0:.:131:131:0:0%:57,74,0,0 -Example1_ref 13599 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:131:131:0:0%:58,73,0,0 -Example1_ref 13600 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 13601 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:132:132:0:0%:58,74,0,0 -Example1_ref 13602 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:134:134:0:0%:60,74,0,0 -Example1_ref 13603 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:54,76,0,0 0/0:.:130:130:0:0%:54,76,0,0 -Example1_ref 13604 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:128:128:0:0%:53,75,0,0 -Example1_ref 13605 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:53,71,0,0 0/0:.:124:124:0:0%:53,71,0,0 -Example1_ref 13606 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:54,73,0,0 0/0:.:127:127:0:0%:54,73,0,0 -Example1_ref 13607 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:53,73,0,0 0/0:.:126:126:0:0%:53,73,0,0 -Example1_ref 13608 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:54,70,0,0 0/0:.:124:124:0:0%:54,70,0,0 -Example1_ref 13609 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:128:128:0:0%:57,71,0,0 -Example1_ref 13610 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:57,69,0,0 0/0:.:126:126:0:0%:57,69,0,0 -Example1_ref 13611 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:57,68,0,0 0/0:.:125:125:0:0%:57,68,0,0 -Example1_ref 13612 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:55,68,0,0 0/0:.:123:123:0:0%:55,68,0,0 -Example1_ref 13613 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:53,69,0,0 0/0:.:122:122:0:0%:53,69,0,0 -Example1_ref 13614 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:51,69,0,0 0/0:.:120:120:0:0%:51,69,0,0 -Example1_ref 13615 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:52,69,0,0 0/0:.:121:121:0:0%:52,69,0,0 -Example1_ref 13616 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:50,69,0,0 0/0:.:119:119:0:0%:50,69,0,0 -Example1_ref 13617 . A T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.5108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:50,65,1,0 0/0:.:116:115:1:0.86%:50,65,1,0 -Example1_ref 13618 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:51,65,0,0 0/0:.:116:116:0:0%:51,65,0,0 -Example1_ref 13619 . A T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=7.5111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:51,61,0,1 0/0:.:113:112:1:0.88%:51,61,0,1 -Example1_ref 13620 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:53,61,0,0 0/0:.:114:114:0:0%:53,61,0,0 -Example1_ref 13621 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:51,62,0,0 0/0:.:113:113:0:0%:51,62,0,0 -Example1_ref 13622 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:52,60,0,0 0/0:.:112:112:0:0%:52,60,0,0 -Example1_ref 13623 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:114:114:0:0%:52,62,0,0 -Example1_ref 13624 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:53,63,0,0 0/0:.:116:116:0:0%:53,63,0,0 -Example1_ref 13625 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:54,64,0,0 0/0:.:118:118:0:0%:54,64,0,0 -Example1_ref 13626 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:115:115:0:0%:53,62,0,0 -Example1_ref 13627 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 13628 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:114:114:0:0%:52,62,0,0 -Example1_ref 13629 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:51,63,0,0 0/0:.:114:114:0:0%:51,63,0,0 -Example1_ref 13630 . A G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:49,61,0,1 0/0:.:111:110:1:0.9%:49,61,0,1 -Example1_ref 13631 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 13632 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:49,59,0,0 0/0:.:108:108:0:0%:49,59,0,0 -Example1_ref 13633 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 13634 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:114:114:0:0%:52,62,0,0 -Example1_ref 13635 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:52,63,0,0 0/0:.:115:115:0:0%:52,63,0,0 -Example1_ref 13636 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:52,64,0,0 0/0:.:116:116:0:0%:52,64,0,0 -Example1_ref 13637 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:53,64,0,0 0/0:.:117:117:0:0%:53,64,0,0 -Example1_ref 13638 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:52,64,0,0 0/0:.:116:116:0:0%:52,64,0,0 -Example1_ref 13639 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:46,63,0,0 0/0:.:109:109:0:0%:46,63,0,0 -Example1_ref 13640 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:52,64,0,0 0/0:.:116:116:0:0%:52,64,0,0 -Example1_ref 13641 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:111:111:0:0%:54,57,0,0 -Example1_ref 13642 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:111:111:0:0%:53,58,0,0 -Example1_ref 13643 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:50,60,0,0 0/0:.:110:110:0:0%:50,60,0,0 -Example1_ref 13644 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:49,60,0,0 0/0:.:109:109:0:0%:49,60,0,0 -Example1_ref 13645 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:113:113:0:0%:54,59,0,0 -Example1_ref 13646 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:112:112:0:0%:53,59,0,0 -Example1_ref 13647 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:54,60,0,0 0/0:.:114:114:0:0%:54,60,0,0 -Example1_ref 13648 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:56,57,0,0 0/0:.:113:113:0:0%:56,57,0,0 -Example1_ref 13649 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 13650 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:111:111:0:0%:53,58,0,0 -Example1_ref 13651 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 13652 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 13653 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:48,59,0,0 0/0:.:107:107:0:0%:48,59,0,0 -Example1_ref 13654 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:111:111:0:0%:54,57,0,0 -Example1_ref 13655 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:0:0%:51,56,0,0 0/0:.:108:107:0:0%:51,56,0,0 -Example1_ref 13656 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:47,54,0,0 0/0:.:102:101:0:0%:47,54,0,0 -Example1_ref 13657 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:104:104:0:0%:50,54,0,0 -Example1_ref 13658 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:48,50,0,0 0/0:.:98:98:0:0%:48,50,0,0 -Example1_ref 13659 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 13660 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:48,54,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 13661 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:47,53,0,0 0/0:.:100:100:0:0%:47,53,0,0 -Example1_ref 13662 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:46,53,0,0 0/0:.:99:99:0:0%:46,53,0,0 -Example1_ref 13663 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:46,55,0,0 0/0:.:101:101:0:0%:46,55,0,0 -Example1_ref 13664 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:99:0:0%:45,54,0,0 0/0:.:100:99:0:0%:45,54,0,0 -Example1_ref 13665 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:47,53,0,0 0/0:.:100:100:0:0%:47,53,0,0 -Example1_ref 13666 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:45,48,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 13667 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:45,50,0,0 0/0:.:95:95:0:0%:45,50,0,0 -Example1_ref 13668 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:45,50,0,0 0/0:.:95:95:0:0%:45,50,0,0 -Example1_ref 13669 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:43,52,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 13670 . G T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=7.5137E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:1:1.09%:40,51,1,0 0/0:.:92:91:1:1.09%:40,51,1,0 -Example1_ref 13671 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:42,52,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 13672 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:42,51,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 13673 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:42,51,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 13674 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:42,55,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 13675 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:0:0%:42,53,0,0 0/0:.:96:95:0:0%:42,53,0,0 -Example1_ref 13676 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:42,55,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 13677 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:40,56,0,0 0/0:.:96:96:0:0%:40,56,0,0 -Example1_ref 13678 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:39,56,0,0 0/0:.:95:95:0:0%:39,56,0,0 -Example1_ref 13679 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:40,58,0,0 0/0:.:98:98:0:0%:40,58,0,0 -Example1_ref 13680 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:39,57,0,0 0/0:.:96:96:0:0%:39,57,0,0 -Example1_ref 13681 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:40,58,0,0 0/0:.:98:98:0:0%:40,58,0,0 -Example1_ref 13682 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:41,52,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 13683 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:45,54,0,0 0/0:.:99:99:0:0%:45,54,0,0 -Example1_ref 13684 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:45,59,0,0 0/0:.:104:104:0:0%:45,59,0,0 -Example1_ref 13685 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:45,58,0,0 0/0:.:103:103:0:0%:45,58,0,0 -Example1_ref 13686 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:45,59,0,0 0/0:.:104:104:0:0%:45,59,0,0 -Example1_ref 13687 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:43,57,0,0 0/0:.:100:100:0:0%:43,57,0,0 -Example1_ref 13688 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:44,57,0,0 0/0:.:101:101:0:0%:44,57,0,0 -Example1_ref 13689 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:44,55,0,0 0/0:.:99:99:0:0%:44,55,0,0 -Example1_ref 13690 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:44,55,0,0 0/0:.:99:99:0:0%:44,55,0,0 -Example1_ref 13691 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:43,55,0,0 0/0:.:98:98:0:0%:43,55,0,0 -Example1_ref 13692 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:43,50,0,0 0/0:.:93:93:0:0%:43,50,0,0 -Example1_ref 13693 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:44,51,0,0 0/0:.:95:95:0:0%:44,51,0,0 -Example1_ref 13694 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:46,50,0,0 0/0:.:96:96:0:0%:46,50,0,0 -Example1_ref 13695 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:46,48,0,0 0/0:.:94:94:0:0%:46,48,0,0 -Example1_ref 13696 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:47,50,0,0 0/0:.:97:97:0:0%:47,50,0,0 -Example1_ref 13697 . A G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.5128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:46,51,1,0 0/0:.:98:97:1:1.02%:46,51,1,0 -Example1_ref 13698 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:47,54,0,0 0/0:.:101:101:0:0%:47,54,0,0 -Example1_ref 13699 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:47,52,0,0 0/0:.:99:99:0:0%:47,52,0,0 -Example1_ref 13700 . A G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.5124E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:1:0.99%:47,53,1,0 0/0:.:101:100:1:0.99%:47,53,1,0 -Example1_ref 13701 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 13702 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:46,49,0,0 0/0:.:95:95:0:0%:46,49,0,0 -Example1_ref 13703 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:48,51,0,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 13704 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:47,51,0,0 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 13705 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 13706 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:49,51,0,0 0/0:.:100:100:0:0%:49,51,0,0 -Example1_ref 13707 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:50,52,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 13708 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 13709 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 13710 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 13711 . C G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.5121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:51,52,0,1 0/0:.:104:103:1:0.96%:51,52,0,1 -Example1_ref 13712 . ATT A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:52,50,0,1 0/0:.:103:102:1:0.97%:52,50,0,1 -Example1_ref 13713 . T TC . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:101:1:0.98%:51,50,1,0 0/0:.:103:101:1:0.98%:51,50,1,0 -Example1_ref 13714 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:104:0:0%:53,51,0,0 0/0:.:105:104:0:0%:53,51,0,0 -Example1_ref 13715 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:51,52,0,0 0/0:.:103:103:0:0%:51,52,0,0 -Example1_ref 13716 . T A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.5121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:52,51,0,1 0/0:.:104:103:1:0.96%:52,51,0,1 -Example1_ref 13717 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:50,52,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 13718 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:52,52,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 13719 . A G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:51,51,0,1 0/0:.:103:102:1:0.97%:51,51,0,1 -Example1_ref 13720 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 13721 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 13722 . C T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:58,52,1,0 0/0:.:111:110:1:0.9%:58,52,1,0 -Example1_ref 13723 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:59,54,0,0 0/0:.:113:113:0:0%:59,54,0,0 -Example1_ref 13724 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:114:114:0:0%:59,55,0,0 -Example1_ref 13725 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:112:112:0:0%:57,55,0,0 -Example1_ref 13726 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:55,55,0,0 0/0:.:110:110:0:0%:55,55,0,0 -Example1_ref 13727 . A AGAGACAG . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=7.5114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:55,54,0,1 0/0:.:110:109:1:0.91%:55,54,0,1 -Example1_ref 13728 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:56,54,0,0 0/0:.:110:110:0:0%:56,54,0,0 -Example1_ref 13729 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:58,53,0,0 0/0:.:111:111:0:0%:58,53,0,0 -Example1_ref 13730 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 13731 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:55,52,0,0 0/0:.:107:107:0:0%:55,52,0,0 -Example1_ref 13732 . T A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=7.5117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:55,51,0,1 0/0:.:107:106:1:0.93%:55,51,0,1 -Example1_ref 13733 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 13734 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:54,50,0,0 0/0:.:104:104:0:0%:54,50,0,0 -Example1_ref 13735 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:109:109:0:0%:57,52,0,0 -Example1_ref 13736 . T A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=7.512E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:104:1:0.95%:56,48,0,1 0/0:.:105:104:1:0.95%:56,48,0,1 -Example1_ref 13737 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 13738 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 13739 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 13740 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 13741 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13742 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 13743 . A ACTGT . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:52,50,1,0 0/0:.:103:102:1:0.97%:52,50,1,0 -Example1_ref 13744 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 13745 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:60,47,0,0 0/0:.:107:107:0:0%:60,47,0,0 -Example1_ref 13746 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13747 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 13748 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 13749 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 13750 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13751 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:58,51,0,0 0/0:.:109:109:0:0%:58,51,0,0 -Example1_ref 13752 . A C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=6.8929E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:104:2:1.89%:55,49,0,2 0/0:.:106:104:2:1.89%:55,49,0,2 -Example1_ref 13753 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 13754 . G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 13755 . G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 13756 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 13757 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 13758 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:57,48,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 13759 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:59,47,0,0 0/0:.:106:106:0:0%:59,47,0,0 -Example1_ref 13760 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:59,50,0,0 0/0:.:109:109:0:0%:59,50,0,0 -Example1_ref 13761 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 13762 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 13763 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 13764 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 13765 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:53,50,0,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 13766 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 13767 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13768 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13769 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 13770 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:56,51,0,0 0/0:.:107:107:0:0%:56,51,0,0 -Example1_ref 13771 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 13772 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13773 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:56,51,0,0 0/0:.:107:107:0:0%:56,51,0,0 -Example1_ref 13774 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13775 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 13776 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:109:109:0:0%:57,52,0,0 -Example1_ref 13777 . G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 13778 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 13779 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:59,53,0,0 0/0:.:112:112:0:0%:59,53,0,0 -Example1_ref 13780 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:58,52,0,0 0/0:.:110:110:0:0%:58,52,0,0 -Example1_ref 13781 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 13782 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:61,52,0,0 0/0:.:113:113:0:0%:61,52,0,0 -Example1_ref 13783 . A T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=7.5111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:61,51,0,1 0/0:.:113:112:1:0.88%:61,51,0,1 -Example1_ref 13784 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:60,51,0,0 0/0:.:111:111:0:0%:60,51,0,0 -Example1_ref 13785 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:63,49,0,0 0/0:.:112:112:0:0%:63,49,0,0 -Example1_ref 13786 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:115:115:0:0%:63,52,0,0 -Example1_ref 13787 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:77,47,0,0 0/0:.:124:124:0:0%:77,47,0,0 -Example1_ref 13788 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:129:129:0:0%:78,51,0,0 -Example1_ref 13789 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 13790 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:131:131:0:0%:78,53,0,0 -Example1_ref 13791 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:128:128:0:0%:75,53,0,0 -Example1_ref 13792 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:77,52,0,0 0/0:.:129:129:0:0%:77,52,0,0 -Example1_ref 13793 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:129:129:0:0%:78,51,0,0 -Example1_ref 13794 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:81,52,0,0 0/0:.:133:133:0:0%:81,52,0,0 -Example1_ref 13795 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:88,49,0,0 0/0:.:137:137:0:0%:88,49,0,0 -Example1_ref 13796 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:88,49,0,0 0/0:.:137:137:0:0%:88,49,0,0 -Example1_ref 13797 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:87,51,0,0 0/0:.:138:138:0:0%:87,51,0,0 -Example1_ref 13798 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:140:140:0:0%:90,50,0,0 -Example1_ref 13799 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:90,48,0,0 0/0:.:138:138:0:0%:90,48,0,0 -Example1_ref 13800 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:89,50,0,0 0/0:.:139:139:0:0%:89,50,0,0 -Example1_ref 13801 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:87,51,0,0 0/0:.:138:138:0:0%:87,51,0,0 -Example1_ref 13802 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:89,51,0,0 0/0:.:140:140:0:0%:89,51,0,0 -Example1_ref 13803 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:89,52,0,0 0/0:.:141:141:0:0%:89,52,0,0 -Example1_ref 13804 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:90,52,0,0 0/0:.:142:142:0:0%:90,52,0,0 -Example1_ref 13805 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:143:143:0:0%:92,51,0,0 -Example1_ref 13806 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:91,52,0,0 0/0:.:143:143:0:0%:91,52,0,0 -Example1_ref 13807 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:92,53,0,0 0/0:.:145:145:0:0%:92,53,0,0 -Example1_ref 13808 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:91,53,0,0 0/0:.:144:144:0:0%:91,53,0,0 -Example1_ref 13809 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:91,50,0,0 0/0:.:141:141:0:0%:91,50,0,0 -Example1_ref 13810 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:146:146:0:0%:94,52,0,0 -Example1_ref 13811 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:95,51,0,0 0/0:.:146:146:0:0%:95,51,0,0 -Example1_ref 13812 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:94,53,0,0 0/0:.:147:147:0:0%:94,53,0,0 -Example1_ref 13813 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:94,48,0,0 0/0:.:142:142:0:0%:94,48,0,0 -Example1_ref 13814 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:92,49,0,0 0/0:.:141:141:0:0%:92,49,0,0 -Example1_ref 13815 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:98,50,0,0 0/0:.:148:148:0:0%:98,50,0,0 -Example1_ref 13816 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:103,52,0,0 0/0:.:155:155:0:0%:103,52,0,0 -Example1_ref 13817 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:102,48,0,0 0/0:.:150:150:0:0%:102,48,0,0 -Example1_ref 13818 . C A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=6.8872E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:153:2:1.29%:105,48,2,0 0/0:.:155:153:2:1.29%:105,48,2,0 -Example1_ref 13819 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:105,51,0,0 0/0:.:156:156:0:0%:105,51,0,0 -Example1_ref 13820 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:108,52,0,0 0/0:.:160:160:0:0%:108,52,0,0 -Example1_ref 13821 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:161:161:0:0%:109,52,0,0 -Example1_ref 13822 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:108,54,0,0 0/0:.:162:162:0:0%:108,54,0,0 -Example1_ref 13823 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:109,54,0,0 0/0:.:163:163:0:0%:109,54,0,0 -Example1_ref 13824 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:110,49,0,0 0/0:.:159:159:0:0%:110,49,0,0 -Example1_ref 13825 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:161:161:0:0%:109,52,0,0 -Example1_ref 13826 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:109,53,0,0 0/0:.:162:162:0:0%:109,53,0,0 -Example1_ref 13827 . G GC . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.5078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:105,54,1,0 0/0:.:160:159:1:0.62%:105,54,1,0 -Example1_ref 13828 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:110,54,0,0 0/0:.:164:164:0:0%:110,54,0,0 -Example1_ref 13829 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:109,54,0,0 0/0:.:163:163:0:0%:109,54,0,0 -Example1_ref 13830 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:107,53,0,0 0/0:.:160:160:0:0%:107,53,0,0 -Example1_ref 13831 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:161:161:0:0%:109,52,0,0 -Example1_ref 13832 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:110,52,0,0 0/0:.:162:162:0:0%:110,52,0,0 -Example1_ref 13833 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:111,55,0,0 0/0:.:166:166:0:0%:111,55,0,0 -Example1_ref 13834 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:109,56,0,0 0/0:.:165:165:0:0%:109,56,0,0 -Example1_ref 13835 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:120,55,0,0 0/0:.:175:175:0:0%:120,55,0,0 -Example1_ref 13836 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:120,55,0,0 0/0:.:175:175:0:0%:120,55,0,0 -Example1_ref 13837 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:122,56,0,0 0/0:.:178:178:0:0%:122,56,0,0 -Example1_ref 13838 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:121,57,0,0 0/0:.:178:178:0:0%:121,57,0,0 -Example1_ref 13839 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:118,57,0,0 0/0:.:175:175:0:0%:118,57,0,0 -Example1_ref 13840 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:124,57,0,0 0/0:.:181:181:0:0%:124,57,0,0 -Example1_ref 13841 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:124,56,0,0 0/0:.:180:180:0:0%:124,56,0,0 -Example1_ref 13842 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:123,58,0,0 0/0:.:181:181:0:0%:123,58,0,0 -Example1_ref 13843 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:127,56,0,0 0/0:.:183:183:0:0%:127,56,0,0 -Example1_ref 13844 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:125,57,0,0 0/0:.:182:182:0:0%:125,57,0,0 -Example1_ref 13845 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:125,62,0,0 0/0:.:187:187:0:0%:125,62,0,0 -Example1_ref 13846 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:126,63,0,0 0/0:.:189:189:0:0%:126,63,0,0 -Example1_ref 13847 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:128,61,0,0 0/0:.:189:189:0:0%:128,61,0,0 -Example1_ref 13848 . G T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=7.5067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:123,63,1,0 0/0:.:187:186:1:0.53%:123,63,1,0 -Example1_ref 13849 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:128,66,0,0 0/0:.:194:194:0:0%:128,66,0,0 -Example1_ref 13850 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:130,66,0,0 0/0:.:196:196:0:0%:130,66,0,0 -Example1_ref 13851 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:130,67,0,0 0/0:.:197:197:0:0%:130,67,0,0 -Example1_ref 13852 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:131,69,0,0 0/0:.:200:200:0:0%:131,69,0,0 -Example1_ref 13853 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:127,69,0,0 0/0:.:196:196:0:0%:127,69,0,0 -Example1_ref 13854 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:128,68,0,0 0/0:.:196:196:0:0%:128,68,0,0 -Example1_ref 13855 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:142,73,0,0 0/0:.:215:215:0:0%:142,73,0,0 -Example1_ref 13856 . G A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:213:1:0.47%:140,73,0,1 0/0:.:216:213:1:0.47%:140,73,0,1 -Example1_ref 13857 . T A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:137,67,0,1 0/0:.:205:204:1:0.49%:137,67,0,1 -Example1_ref 13858 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:139,73,0,0 0/0:.:212:212:0:0%:139,73,0,0 -Example1_ref 13859 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:141,74,0,0 0/0:.:215:215:0:0%:141,74,0,0 -Example1_ref 13860 . G T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:136,73,1,0 0/0:.:210:209:1:0.48%:136,73,1,0 -Example1_ref 13861 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:143,72,0,0 0/0:.:215:215:0:0%:143,72,0,0 -Example1_ref 13862 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:142,74,0,0 0/0:.:216:216:0:0%:142,74,0,0 -Example1_ref 13863 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:142,74,0,0 0/0:.:216:216:0:0%:142,74,0,0 -Example1_ref 13864 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:141,69,0,0 0/0:.:210:210:0:0%:141,69,0,0 -Example1_ref 13865 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:139,70,0,0 0/0:.:209:209:0:0%:139,70,0,0 -Example1_ref 13866 . G GCT . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.5061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:1:0.49%:133,70,1,0 0/0:.:204:203:1:0.49%:133,70,1,0 -Example1_ref 13867 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:141,68,0,0 0/0:.:209:209:0:0%:141,68,0,0 -Example1_ref 13868 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:143,66,0,0 0/0:.:209:209:0:0%:143,66,0,0 -Example1_ref 13869 . G T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:141,70,1,0 0/0:.:212:211:1:0.47%:141,70,1,0 -Example1_ref 13870 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:146,69,0,0 0/0:.:215:215:0:0%:146,69,0,0 -Example1_ref 13871 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:141,73,0,0 0/0:.:214:214:0:0%:141,73,0,0 -Example1_ref 13872 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:140,73,0,0 0/0:.:213:213:0:0%:140,73,0,0 -Example1_ref 13873 . G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:133,73,0,0 0/0:.:206:206:0:0%:133,73,0,0 -Example1_ref 13874 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:141,73,0,0 0/0:.:214:214:0:0%:141,73,0,0 -Example1_ref 13875 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:0:0%:144,74,0,0 0/0:.:219:218:0:0%:144,74,0,0 -Example1_ref 13876 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:142,76,0,0 0/0:.:218:218:0:0%:142,76,0,0 -Example1_ref 13877 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:145,72,0,0 0/0:.:217:217:0:0%:145,72,0,0 -Example1_ref 13878 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:144,75,0,0 0/0:.:219:219:0:0%:144,75,0,0 -Example1_ref 13879 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:150,73,0,0 0/0:.:223:223:0:0%:150,73,0,0 -Example1_ref 13880 . C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:151,76,0,0 0/0:.:227:227:0:0%:151,76,0,0 -Example1_ref 13881 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:148,76,0,0 0/0:.:224:224:0:0%:148,76,0,0 -Example1_ref 13882 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:151,77,0,0 0/0:.:228:228:0:0%:151,77,0,0 -Example1_ref 13883 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:153,77,0,0 0/0:.:230:230:0:0%:153,77,0,0 -Example1_ref 13884 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:151,78,0,0 0/0:.:229:229:0:0%:151,78,0,0 -Example1_ref 13885 . AG A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:233:1:0.43%:150,83,0,1 0/0:.:235:233:1:0.43%:150,83,0,1 -Example1_ref 13886 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:149,85,0,0 0/0:.:234:234:0:0%:149,85,0,0 -Example1_ref 13887 . G . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:147,86,0,0 0/0:.:233:233:0:0%:147,86,0,0 -Example1_ref 13888 . A G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:144,79,0,1 0/0:.:224:223:1:0.45%:144,79,0,1 -Example1_ref 13889 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:149,85,0,0 0/0:.:234:234:0:0%:149,85,0,0 -Example1_ref 13890 . G . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:144,82,0,0 0/0:.:226:226:0:0%:144,82,0,0 -Example1_ref 13891 . G T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.5054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:148,82,1,0 0/0:.:231:230:1:0.43%:148,82,1,0 -Example1_ref 13892 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:150,85,0,0 0/0:.:235:235:0:0%:150,85,0,0 -Example1_ref 13893 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:151,87,0,0 0/0:.:238:238:0:0%:151,87,0,0 -Example1_ref 13894 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:150,86,0,0 0/0:.:236:236:0:0%:150,86,0,0 -Example1_ref 13895 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:152,87,0,0 0/0:.:239:239:0:0%:152,87,0,0 -Example1_ref 13896 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:154,87,0,0 0/0:.:241:241:0:0%:154,87,0,0 -Example1_ref 13897 . C . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:152,83,0,0 0/0:.:235:235:0:0%:152,83,0,0 -Example1_ref 13898 . C . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:0:0%:152,86,0,0 0/0:.:239:238:0:0%:152,86,0,0 -Example1_ref 13899 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:153,89,0,0 0/0:.:242:242:0:0%:153,89,0,0 -Example1_ref 13900 . A G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:237:1:0.42%:150,87,1,0 0/0:.:239:237:1:0.42%:150,87,1,0 -Example1_ref 13901 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:151,84,0,0 0/0:.:235:235:0:0%:151,84,0,0 -Example1_ref 13902 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:0:0%:149,84,0,0 0/0:.:234:233:0:0%:149,84,0,0 -Example1_ref 13903 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:0:0%:152,89,0,0 0/0:.:242:241:0:0%:152,89,0,0 -Example1_ref 13904 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:155,87,0,0 0/0:.:243:242:0:0%:155,87,0,0 -Example1_ref 13905 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:0:0%:151,88,0,0 0/0:.:240:239:0:0%:151,88,0,0 -Example1_ref 13906 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:152,90,0,0 0/0:.:242:242:0:0%:152,90,0,0 -Example1_ref 13907 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:151,87,0,0 0/0:.:238:238:0:0%:151,87,0,0 -Example1_ref 13908 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:154,94,0,0 0/0:.:248:248:0:0%:154,94,0,0 -Example1_ref 13909 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:150,94,0,0 0/0:.:244:244:0:0%:150,94,0,0 -Example1_ref 13910 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:150,92,0,0 0/0:.:242:242:0:0%:150,92,0,0 -Example1_ref 13911 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:146,95,0,0 0/0:.:241:241:0:0%:146,95,0,0 -Example1_ref 13912 . G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:146,91,0,0 0/0:.:237:237:0:0%:146,91,0,0 -Example1_ref 13913 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:148,84,0,0 0/0:.:232:232:0:0%:148,84,0,0 -Example1_ref 13914 . G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:154,87,0,0 0/0:.:241:241:0:0%:154,87,0,0 -Example1_ref 13915 . G T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:152,92,1,0 0/0:.:245:244:1:0.41%:152,92,1,0 -Example1_ref 13916 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:153,93,0,0 0/0:.:246:246:0:0%:153,93,0,0 -Example1_ref 13917 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:151,93,0,0 0/0:.:244:244:0:0%:151,93,0,0 -Example1_ref 13918 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:151,96,0,0 0/0:.:247:247:0:0%:151,96,0,0 -Example1_ref 13919 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:152,91,0,0 0/0:.:243:243:0:0%:152,91,0,0 -Example1_ref 13920 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:153,96,0,0 0/0:.:249:249:0:0%:153,96,0,0 -Example1_ref 13921 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:155,95,0,0 0/0:.:250:250:0:0%:155,95,0,0 -Example1_ref 13922 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:157,95,0,0 0/0:.:252:252:0:0%:157,95,0,0 -Example1_ref 13923 . G T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:152,98,1,0 0/0:.:251:250:1:0.4%:152,98,1,0 -Example1_ref 13924 . A T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:253:1:0.39%:155,98,1,0 0/0:.:254:253:1:0.39%:155,98,1,0 -Example1_ref 13925 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:152,99,0,0 0/0:.:251:251:0:0%:152,99,0,0 -Example1_ref 13926 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:158,99,0,0 0/0:.:257:257:0:0%:158,99,0,0 -Example1_ref 13927 . C A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:159,98,0,1 0/0:.:258:257:1:0.39%:159,98,0,1 -Example1_ref 13928 . AACAGC A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:156,99,1,0 0/0:.:256:255:1:0.39%:156,99,1,0 -Example1_ref 13929 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:156,100,0,0 0/0:.:256:256:0:0%:156,100,0,0 -Example1_ref 13930 . C . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:158,100,0,0 0/0:.:258:258:0:0%:158,100,0,0 -Example1_ref 13931 . A AG . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:157,99,0,1 0/0:.:257:256:1:0.39%:157,99,0,1 -Example1_ref 13932 . G A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:156,99,1,0 0/0:.:256:255:1:0.39%:156,99,1,0 -Example1_ref 13933 . C A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:159,93,0,1 0/0:.:253:252:1:0.4%:159,93,0,1 -Example1_ref 13934 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:156,102,0,0 0/0:.:258:258:0:0%:156,102,0,0 -Example1_ref 13935 . C . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:158,93,0,0 0/0:.:251:251:0:0%:158,93,0,0 -Example1_ref 13936 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:156,97,0,0 0/0:.:253:253:0:0%:156,97,0,0 -Example1_ref 13937 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:158,98,0,0 0/0:.:256:256:0:0%:158,98,0,0 -Example1_ref 13938 . G . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:157,99,0,0 0/0:.:256:256:0:0%:157,99,0,0 -Example1_ref 13939 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:162,100,0,0 0/0:.:262:262:0:0%:162,100,0,0 -Example1_ref 13940 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:159,99,0,0 0/0:.:258:258:0:0%:159,99,0,0 -Example1_ref 13941 . G . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:158,100,0,0 0/0:.:258:258:0:0%:158,100,0,0 -Example1_ref 13942 . T C . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:161,95,1,0 0/0:.:257:256:1:0.39%:161,95,1,0 -Example1_ref 13943 . C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:159,96,0,0 0/0:.:255:255:0:0%:159,96,0,0 -Example1_ref 13944 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:161,101,0,0 0/0:.:262:262:0:0%:161,101,0,0 -Example1_ref 13945 . GA G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:1:0.39%:158,100,1,0 0/0:.:259:258:1:0.39%:158,100,1,0 -Example1_ref 13946 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:157,102,0,0 0/0:.:259:259:0:0%:157,102,0,0 -Example1_ref 13947 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:159,102,0,0 0/0:.:261:261:0:0%:159,102,0,0 -Example1_ref 13948 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:154,102,0,0 0/0:.:256:256:0:0%:154,102,0,0 -Example1_ref 13949 . G . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:157,98,0,0 0/0:.:255:255:0:0%:157,98,0,0 -Example1_ref 13950 . C A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:159,92,0,1 0/0:.:252:251:1:0.4%:159,92,0,1 -Example1_ref 13951 . C A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:159,95,1,0 0/0:.:255:254:1:0.39%:159,95,1,0 -Example1_ref 13952 . C . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:160,97,0,0 0/0:.:257:257:0:0%:160,97,0,0 -Example1_ref 13953 . T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:161,99,0,0 0/0:.:260:260:0:0%:161,99,0,0 -Example1_ref 13954 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:161,101,0,0 0/0:.:262:262:0:0%:161,101,0,0 -Example1_ref 13955 . G A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:1:0.39%:157,101,0,1 0/0:.:259:258:1:0.39%:157,101,0,1 -Example1_ref 13956 . A . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:160,105,0,0 0/0:.:265:265:0:0%:160,105,0,0 -Example1_ref 13957 . GT G . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:266:1:0.37%:160,106,1,0 0/0:.:268:266:1:0.37%:160,106,1,0 -Example1_ref 13958 . T TCTG . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:159,107,1,0 0/0:.:267:266:1:0.37%:159,107,1,0 -Example1_ref 13959 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:161,110,0,0 0/0:.:271:271:0:0%:161,110,0,0 -Example1_ref 13960 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:161,112,0,0 0/0:.:273:273:0:0%:161,112,0,0 -Example1_ref 13961 . T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:164,114,0,0 0/0:.:278:278:0:0%:164,114,0,0 -Example1_ref 13962 . C . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:161,113,0,0 0/0:.:274:274:0:0%:161,113,0,0 -Example1_ref 13963 . A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:164,117,0,0 0/0:.:281:281:0:0%:164,117,0,0 -Example1_ref 13964 . C T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=6.8818E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:275:2:0.72%:162,113,2,0 0/0:.:277:275:2:0.72%:162,113,2,0 -Example1_ref 13965 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:163,114,0,0 0/0:.:277:277:0:0%:163,114,0,0 -Example1_ref 13966 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:163,114,0,0 0/0:.:277:277:0:0%:163,114,0,0 -Example1_ref 13967 . A C . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=6.5711E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:272:3:1.09%:154,118,3,0 0/0:.:275:272:3:1.09%:154,118,3,0 -Example1_ref 13968 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:160,115,0,0 0/0:.:275:275:0:0%:160,115,0,0 -Example1_ref 13969 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:158,113,0,0 0/0:.:271:271:0:0%:158,113,0,0 -Example1_ref 13970 . T . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:156,114,0,0 0/0:.:270:270:0:0%:156,114,0,0 -Example1_ref 13971 . T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:159,113,0,0 0/0:.:272:272:0:0%:159,113,0,0 -Example1_ref 13972 . A G . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:160,116,0,1 0/0:.:277:276:1:0.36%:160,116,0,1 -Example1_ref 13973 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:154,115,0,0 0/0:.:269:269:0:0%:154,115,0,0 -Example1_ref 13974 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:159,115,0,0 0/0:.:274:274:0:0%:159,115,0,0 -Example1_ref 13975 . G . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:154,118,0,0 0/0:.:272:272:0:0%:154,118,0,0 -Example1_ref 13976 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:150,118,0,0 0/0:.:268:268:0:0%:150,118,0,0 -Example1_ref 13977 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:144,118,0,0 0/0:.:262:262:0:0%:144,118,0,0 -Example1_ref 13978 . G . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:144,117,0,0 0/0:.:261:261:0:0%:144,117,0,0 -Example1_ref 13979 . G . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:142,119,0,0 0/0:.:261:261:0:0%:142,119,0,0 -Example1_ref 13980 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:139,118,0,0 0/0:.:257:257:0:0%:139,118,0,0 -Example1_ref 13981 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:146,116,0,0 0/0:.:262:262:0:0%:146,116,0,0 -Example1_ref 13982 . G . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:144,113,0,0 0/0:.:257:257:0:0%:144,113,0,0 -Example1_ref 13983 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:145,113,0,0 0/0:.:258:258:0:0%:145,113,0,0 -Example1_ref 13984 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:144,117,0,0 0/0:.:261:261:0:0%:144,117,0,0 -Example1_ref 13985 . A T . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:138,121,0,1 0/0:.:260:259:1:0.38%:138,121,0,1 -Example1_ref 13986 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:138,120,0,0 0/0:.:258:258:0:0%:138,120,0,0 -Example1_ref 13987 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:136,121,0,0 0/0:.:257:257:0:0%:136,121,0,0 -Example1_ref 13988 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:136,121,0,0 0/0:.:257:257:0:0%:136,121,0,0 -Example1_ref 13989 . A C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:134,120,1,0 0/0:.:255:254:1:0.39%:134,120,1,0 -Example1_ref 13990 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:136,119,0,0 0/0:.:255:255:0:0%:136,119,0,0 -Example1_ref 13991 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:133,119,0,0 0/0:.:252:252:0:0%:133,119,0,0 -Example1_ref 13992 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:134,117,0,0 0/0:.:251:251:0:0%:134,117,0,0 -Example1_ref 13993 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:136,117,0,0 0/0:.:253:253:0:0%:136,117,0,0 -Example1_ref 13994 . A G . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:133,115,1,0 0/0:.:249:248:1:0.4%:133,115,1,0 -Example1_ref 13995 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:133,120,0,0 0/0:.:253:253:0:0%:133,120,0,0 -Example1_ref 13996 . G GA . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:130,119,0,1 0/0:.:250:249:1:0.4%:130,119,0,1 -Example1_ref 13997 . G T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:127,118,1,0 0/0:.:246:245:1:0.41%:127,118,1,0 -Example1_ref 13998 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:131,121,0,0 0/0:.:252:252:0:0%:131,121,0,0 -Example1_ref 13999 . CA C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:124,119,1,0 0/0:.:244:243:1:0.41%:124,119,1,0 -Example1_ref 14000 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:0:0%:128,122,0,0 0/0:.:251:250:0:0%:128,122,0,0 -Example1_ref 14001 . GGCTCT G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:124,120,0,1 0/0:.:245:244:1:0.41%:124,120,0,1 -Example1_ref 14002 . G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:125,117,0,0 0/0:.:243:242:0:0%:125,117,0,0 -Example1_ref 14003 . C . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:0:0%:130,115,0,0 0/0:.:246:245:0:0%:130,115,0,0 -Example1_ref 14004 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:0:0%:127,119,0,0 0/0:.:247:246:0:0%:127,119,0,0 -Example1_ref 14005 . C A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:243:1:0.41%:125,118,0,1 0/0:.:245:243:1:0.41%:125,118,0,1 -Example1_ref 14006 . T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:0:0%:126,119,0,0 0/0:.:246:245:0:0%:126,119,0,0 -Example1_ref 14007 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:127,115,0,0 0/0:.:243:242:0:0%:127,115,0,0 -Example1_ref 14008 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:128,120,0,0 0/0:.:248:248:0:0%:128,120,0,0 -Example1_ref 14009 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:128,124,0,0 0/0:.:252:252:0:0%:128,124,0,0 -Example1_ref 14010 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:127,124,0,0 0/0:.:251:251:0:0%:127,124,0,0 -Example1_ref 14011 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:123,125,0,0 0/0:.:248:248:0:0%:123,125,0,0 -Example1_ref 14012 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:126,126,0,0 0/0:.:252:252:0:0%:126,126,0,0 -Example1_ref 14013 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:121,125,0,0 0/0:.:246:246:0:0%:121,125,0,0 -Example1_ref 14014 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:0:0%:120,125,0,0 0/0:.:246:245:0:0%:120,125,0,0 -Example1_ref 14015 . G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:0:0%:121,128,0,0 0/0:.:250:249:0:0%:121,128,0,0 -Example1_ref 14016 . A AC . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=6.8827E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:242:2:0.82%:120,122,0,2 0/0:.:244:242:2:0.82%:120,122,0,2 -Example1_ref 14017 . AG A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=7.505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:121,129,1,0 0/0:.:251:250:1:0.4%:121,129,1,0 -Example1_ref 14018 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:120,127,0,0 0/0:.:247:247:0:0%:120,127,0,0 -Example1_ref 14019 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:118,127,0,0 0/0:.:245:245:0:0%:118,127,0,0 -Example1_ref 14020 . G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:119,125,0,0 0/0:.:244:244:0:0%:119,125,0,0 -Example1_ref 14021 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:115,125,0,0 0/0:.:240:240:0:0%:115,125,0,0 -Example1_ref 14022 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:118,130,0,0 0/0:.:248:248:0:0%:118,130,0,0 -Example1_ref 14023 . A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:121,132,0,0 0/0:.:253:253:0:0%:121,132,0,0 -Example1_ref 14024 . G C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.5049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:121,133,0,1 0/0:.:255:254:1:0.39%:121,133,0,1 -Example1_ref 14025 . G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:112,131,0,0 0/0:.:244:243:0:0%:112,131,0,0 -Example1_ref 14026 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:251:251:0:0%:119,132,0,0 -Example1_ref 14027 . G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:118,132,0,0 0/0:.:250:250:0:0%:118,132,0,0 -Example1_ref 14028 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:118,126,0,0 0/0:.:244:244:0:0%:118,126,0,0 -Example1_ref 14029 . T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:118,131,0,0 0/0:.:249:249:0:0%:118,131,0,0 -Example1_ref 14030 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:119,135,0,0 0/0:.:254:254:0:0%:119,135,0,0 -Example1_ref 14031 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:118,134,0,0 0/0:.:252:252:0:0%:118,134,0,0 -Example1_ref 14032 . G . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:114,134,0,0 0/0:.:248:248:0:0%:114,134,0,0 -Example1_ref 14033 . C . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:116,129,0,0 0/0:.:245:245:0:0%:116,129,0,0 -Example1_ref 14034 . T C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:116,131,0,1 0/0:.:248:247:1:0.4%:116,131,0,1 -Example1_ref 14035 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:117,128,0,0 0/0:.:245:245:0:0%:117,128,0,0 -Example1_ref 14036 . G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:115,126,0,0 0/0:.:241:241:0:0%:115,126,0,0 -Example1_ref 14037 . C A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=6.8829E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:238:2:0.83%:116,122,0,2 0/0:.:240:238:2:0.83%:116,122,0,2 -Example1_ref 14038 . A AC . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=6.5721E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:243:3:1.22%:115,128,3,0 0/0:.:246:243:3:1.22%:115,128,3,0 -Example1_ref 14039 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:0:0%:120,124,0,0 0/0:.:245:244:0:0%:120,124,0,0 -Example1_ref 14040 . G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:121,122,0,0 0/0:.:243:243:0:0%:121,122,0,0 -Example1_ref 14041 . T TC . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=6.5722E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:241:3:1.23%:119,122,3,0 0/0:.:244:241:3:1.23%:119,122,3,0 -Example1_ref 14042 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:119,124,0,0 0/0:.:244:243:0:0%:119,124,0,0 -Example1_ref 14043 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:116,125,0,0 0/0:.:241:241:0:0%:116,125,0,0 -Example1_ref 14044 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:114,118,0,0 0/0:.:232:232:0:0%:114,118,0,0 -Example1_ref 14045 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:110,117,0,0 0/0:.:227:227:0:0%:110,117,0,0 -Example1_ref 14046 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:112,117,0,0 0/0:.:229:229:0:0%:112,117,0,0 -Example1_ref 14047 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:116,119,0,0 0/0:.:235:235:0:0%:116,119,0,0 -Example1_ref 14048 . GC G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:117,119,0,1 0/0:.:237:236:1:0.42%:117,119,0,1 -Example1_ref 14049 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:115,114,0,0 0/0:.:229:229:0:0%:115,114,0,0 -Example1_ref 14050 . C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:113,114,0,0 0/0:.:227:227:0:0%:113,114,0,0 -Example1_ref 14051 . A C . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:121,120,0,1 0/0:.:242:241:1:0.41%:121,120,0,1 -Example1_ref 14052 . C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:135,117,0,0 0/0:.:252:252:0:0%:135,117,0,0 -Example1_ref 14053 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:138,120,0,0 0/0:.:258:258:0:0%:138,120,0,0 -Example1_ref 14054 . T G . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=7.5048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:136,124,0,1 0/0:.:261:260:1:0.38%:136,124,0,1 -Example1_ref 14055 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:135,126,0,0 0/0:.:261:261:0:0%:135,126,0,0 -Example1_ref 14056 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:134,127,0,0 0/0:.:261:261:0:0%:134,127,0,0 -Example1_ref 14057 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:135,127,0,0 0/0:.:262:262:0:0%:135,127,0,0 -Example1_ref 14058 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:130,122,0,0 0/0:.:252:252:0:0%:130,122,0,0 -Example1_ref 14059 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:132,129,0,0 0/0:.:261:261:0:0%:132,129,0,0 -Example1_ref 14060 . C A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=6.5718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:251:3:1.18%:131,120,1,2 0/0:.:254:251:3:1.18%:131,120,1,2 -Example1_ref 14061 . C . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:133,122,0,0 0/0:.:255:255:0:0%:133,122,0,0 -Example1_ref 14062 . T . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:137,124,0,0 0/0:.:261:261:0:0%:137,124,0,0 -Example1_ref 14063 . G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:135,125,0,0 0/0:.:260:260:0:0%:135,125,0,0 -Example1_ref 14064 . C . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:133,124,0,0 0/0:.:257:257:0:0%:133,124,0,0 -Example1_ref 14065 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:134,126,0,0 0/0:.:260:260:0:0%:134,126,0,0 -Example1_ref 14066 . G . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:134,125,0,0 0/0:.:259:259:0:0%:134,125,0,0 -Example1_ref 14067 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:133,125,0,0 0/0:.:258:258:0:0%:133,125,0,0 -Example1_ref 14068 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:130,127,0,0 0/0:.:257:257:0:0%:130,127,0,0 -Example1_ref 14069 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:128,126,0,0 0/0:.:254:254:0:0%:128,126,0,0 -Example1_ref 14070 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:125,127,0,0 0/0:.:252:252:0:0%:125,127,0,0 -Example1_ref 14071 . T G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=7.5051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:126,118,0,1 0/0:.:245:244:1:0.41%:126,118,0,1 -Example1_ref 14072 . T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:128,126,0,0 0/0:.:254:254:0:0%:128,126,0,0 -Example1_ref 14073 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:0:0%:127,129,0,0 0/0:.:257:256:0:0%:127,129,0,0 -Example1_ref 14074 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:131,131,0,0 0/0:.:262:262:0:0%:131,131,0,0 -Example1_ref 14075 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:132,125,0,0 0/0:.:257:257:0:0%:132,125,0,0 -Example1_ref 14076 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:131,131,0,0 0/0:.:262:262:0:0%:131,131,0,0 -Example1_ref 14077 . T . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:135,130,0,0 0/0:.:265:265:0:0%:135,130,0,0 -Example1_ref 14078 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:134,135,0,0 0/0:.:269:269:0:0%:134,135,0,0 -Example1_ref 14079 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:133,135,0,0 0/0:.:268:268:0:0%:133,135,0,0 -Example1_ref 14080 . T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:135,127,0,0 0/0:.:262:262:0:0%:135,127,0,0 -Example1_ref 14081 . T . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:133,132,0,0 0/0:.:265:265:0:0%:133,132,0,0 -Example1_ref 14082 . C . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:134,133,0,0 0/0:.:267:267:0:0%:134,133,0,0 -Example1_ref 14083 . A G . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=7.5047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:134,132,0,1 0/0:.:267:266:1:0.37%:134,132,0,1 -Example1_ref 14084 . G . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:138,132,0,0 0/0:.:270:270:0:0%:138,132,0,0 -Example1_ref 14085 . G . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:136,133,0,0 0/0:.:269:269:0:0%:136,133,0,0 -Example1_ref 14086 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:138,136,0,0 0/0:.:274:274:0:0%:138,136,0,0 -Example1_ref 14087 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:138,136,0,0 0/0:.:274:274:0:0%:138,136,0,0 -Example1_ref 14088 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:138,137,0,0 0/0:.:275:275:0:0%:138,137,0,0 -Example1_ref 14089 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:145,137,0,0 0/0:.:282:282:0:0%:145,137,0,0 -Example1_ref 14090 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:144,141,0,0 0/0:.:285:285:0:0%:144,141,0,0 -Example1_ref 14091 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:149,141,0,0 0/0:.:290:290:0:0%:149,141,0,0 -Example1_ref 14092 . T A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:290:1:0.34%:149,141,1,0 0/0:.:292:290:1:0.34%:149,141,1,0 -Example1_ref 14093 . A T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:149,139,0,1 0/0:.:289:288:1:0.35%:149,139,0,1 -Example1_ref 14094 . T . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:0:0%:145,139,0,0 0/0:.:285:284:0:0%:145,139,0,0 -Example1_ref 14095 . A AAGAGAC . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=6.8816E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:283:2:0.7%:143,140,0,2 0/0:.:285:283:2:0.7%:143,140,0,2 -Example1_ref 14096 . A AC . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:1:0.35%:143,138,0,1 0/0:.:282:281:1:0.35%:143,138,0,1 -Example1_ref 14097 . CG C . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:279:1:0.36%:142,137,1,0 0/0:.:281:279:1:0.36%:142,137,1,0 -Example1_ref 14098 . G . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:143,136,0,0 0/0:.:279:279:0:0%:143,136,0,0 -Example1_ref 14099 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:0:0%:142,139,0,0 0/0:.:282:281:0:0%:142,139,0,0 -Example1_ref 14100 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:137,141,0,0 0/0:.:278:278:0:0%:137,141,0,0 -Example1_ref 14101 . T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:141,142,0,0 0/0:.:283:283:0:0%:141,142,0,0 -Example1_ref 14102 . G . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:144,141,0,0 0/0:.:285:285:0:0%:144,141,0,0 -Example1_ref 14103 . T . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:148,141,0,0 0/0:.:289:289:0:0%:148,141,0,0 -Example1_ref 14104 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:147,140,0,0 0/0:.:287:287:0:0%:147,140,0,0 -Example1_ref 14105 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:144,141,0,0 0/0:.:285:285:0:0%:144,141,0,0 -Example1_ref 14106 . T . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:145,137,0,0 0/0:.:282:282:0:0%:145,137,0,0 -Example1_ref 14107 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:145,135,0,0 0/0:.:280:280:0:0%:145,135,0,0 -Example1_ref 14108 . G A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=7.5045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:1:0.36%:140,139,0,1 0/0:.:280:279:1:0.36%:140,139,0,1 -Example1_ref 14109 . G T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=6.8815E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:286:2:0.69%:140,146,2,0 0/0:.:288:286:2:0.69%:140,146,2,0 -Example1_ref 14110 . T . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:147,140,0,0 0/0:.:287:287:0:0%:147,140,0,0 -Example1_ref 14111 . C A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=6.8817E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:280:2:0.71%:142,138,0,2 0/0:.:283:280:2:0.71%:142,138,0,2 -Example1_ref 14112 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:140,139,0,0 0/0:.:279:279:0:0%:140,139,0,0 -Example1_ref 14113 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:141,145,0,0 0/0:.:286:286:0:0%:141,145,0,0 -Example1_ref 14114 . C . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:141,143,0,0 0/0:.:284:284:0:0%:141,143,0,0 -Example1_ref 14115 . G . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:139,150,0,0 0/0:.:289:289:0:0%:139,150,0,0 -Example1_ref 14116 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:136,154,0,0 0/0:.:290:290:0:0%:136,154,0,0 -Example1_ref 14117 . G . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:136,148,0,0 0/0:.:284:284:0:0%:136,148,0,0 -Example1_ref 14118 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:137,157,0,0 0/0:.:294:294:0:0%:137,157,0,0 -Example1_ref 14119 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:137,158,0,0 0/0:.:295:295:0:0%:137,158,0,0 -Example1_ref 14120 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:142,160,0,0 0/0:.:302:302:0:0%:142,160,0,0 -Example1_ref 14121 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:140,161,0,0 0/0:.:301:301:0:0%:140,161,0,0 -Example1_ref 14122 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:135,161,0,0 0/0:.:296:296:0:0%:135,161,0,0 -Example1_ref 14123 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:141,166,0,0 0/0:.:307:307:0:0%:141,166,0,0 -Example1_ref 14124 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:139,165,0,0 0/0:.:304:304:0:0%:139,165,0,0 -Example1_ref 14125 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:137,165,0,0 0/0:.:302:302:0:0%:137,165,0,0 -Example1_ref 14126 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:139,165,0,0 0/0:.:304:304:0:0%:139,165,0,0 -Example1_ref 14127 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:141,164,0,0 0/0:.:305:305:0:0%:141,164,0,0 -Example1_ref 14128 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:140,164,0,0 0/0:.:304:304:0:0%:140,164,0,0 -Example1_ref 14129 . T G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:139,162,0,1 0/0:.:302:301:1:0.33%:139,162,0,1 -Example1_ref 14130 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:141,160,0,0 0/0:.:301:301:0:0%:141,160,0,0 -Example1_ref 14131 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:138,160,0,0 0/0:.:298:298:0:0%:138,160,0,0 -Example1_ref 14132 . C A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:139,158,0,1 0/0:.:298:297:1:0.34%:139,158,0,1 -Example1_ref 14133 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:138,163,0,0 0/0:.:301:301:0:0%:138,163,0,0 -Example1_ref 14134 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:142,164,0,0 0/0:.:306:306:0:0%:142,164,0,0 -Example1_ref 14135 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:142,167,0,0 0/0:.:309:309:0:0%:142,167,0,0 -Example1_ref 14136 . C T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:142,169,1,0 0/0:.:312:311:1:0.32%:142,169,1,0 -Example1_ref 14137 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:140,169,0,0 0/0:.:309:309:0:0%:140,169,0,0 -Example1_ref 14138 . G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:140,166,0,0 0/0:.:306:306:0:0%:140,166,0,0 -Example1_ref 14139 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:133,169,0,0 0/0:.:302:302:0:0%:133,169,0,0 -Example1_ref 14140 . G . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:143,167,0,0 0/0:.:310:310:0:0%:143,167,0,0 -Example1_ref 14141 . G T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:140,172,1,0 0/0:.:313:312:1:0.32%:140,172,1,0 -Example1_ref 14142 . T . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:147,172,0,0 0/0:.:319:319:0:0%:147,172,0,0 -Example1_ref 14143 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:145,173,0,0 0/0:.:318:318:0:0%:145,173,0,0 -Example1_ref 14144 . T . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:148,171,0,0 0/0:.:319:319:0:0%:148,171,0,0 -Example1_ref 14145 . C A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:144,168,0,1 0/0:.:313:312:1:0.32%:144,168,0,1 -Example1_ref 14146 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:144,170,0,0 0/0:.:314:314:0:0%:144,170,0,0 -Example1_ref 14147 . T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:143,169,0,0 0/0:.:312:312:0:0%:143,169,0,0 -Example1_ref 14148 . T G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:1:0.32%:144,172,1,0 0/0:.:317:316:1:0.32%:144,172,1,0 -Example1_ref 14149 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:142,166,0,0 0/0:.:308:308:0:0%:142,166,0,0 -Example1_ref 14150 . G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:140,162,0,0 0/0:.:302:302:0:0%:140,162,0,0 -Example1_ref 14151 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:141,162,0,0 0/0:.:303:303:0:0%:141,162,0,0 -Example1_ref 14152 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:142,158,0,0 0/0:.:300:300:0:0%:142,158,0,0 -Example1_ref 14153 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:142,152,0,0 0/0:.:294:294:0:0%:142,152,0,0 -Example1_ref 14154 . G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:144,157,0,0 0/0:.:301:301:0:0%:144,157,0,0 -Example1_ref 14155 . T TA . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:141,153,1,0 0/0:.:295:294:1:0.34%:141,153,1,0 -Example1_ref 14156 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:140,156,0,0 0/0:.:296:296:0:0%:140,156,0,0 -Example1_ref 14157 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:138,156,0,0 0/0:.:294:294:0:0%:138,156,0,0 -Example1_ref 14158 . A G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:144,159,0,1 0/0:.:304:303:1:0.33%:144,159,0,1 -Example1_ref 14159 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:141,162,0,0 0/0:.:303:303:0:0%:141,162,0,0 -Example1_ref 14160 . A T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:141,161,1,0 0/0:.:303:302:1:0.33%:141,161,1,0 -Example1_ref 14161 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:145,163,0,0 0/0:.:308:308:0:0%:145,163,0,0 -Example1_ref 14162 . C . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:147,162,0,0 0/0:.:309:309:0:0%:147,162,0,0 -Example1_ref 14163 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:145,158,0,0 0/0:.:303:303:0:0%:145,158,0,0 -Example1_ref 14164 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:146,165,0,0 0/0:.:311:311:0:0%:146,165,0,0 -Example1_ref 14165 . G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:142,164,0,0 0/0:.:306:306:0:0%:142,164,0,0 -Example1_ref 14166 . G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:144,162,0,0 0/0:.:306:306:0:0%:144,162,0,0 -Example1_ref 14167 . A T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:144,167,1,0 0/0:.:312:311:1:0.32%:144,167,1,0 -Example1_ref 14168 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:144,167,0,0 0/0:.:311:311:0:0%:144,167,0,0 -Example1_ref 14169 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:146,168,0,0 0/0:.:314:314:0:0%:146,168,0,0 -Example1_ref 14170 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:0:0%:146,168,0,0 0/0:.:315:314:0:0%:146,168,0,0 -Example1_ref 14171 . G . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:0:0%:146,172,0,0 0/0:.:319:318:0:0%:146,172,0,0 -Example1_ref 14172 . T . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:322:0:0%:147,175,0,0 0/0:.:323:322:0:0%:147,175,0,0 -Example1_ref 14173 . G A . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:319:1:0.31%:141,178,0,1 0/0:.:321:319:1:0.31%:141,178,0,1 -Example1_ref 14174 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:144,184,0,0 0/0:.:328:328:0:0%:144,184,0,0 -Example1_ref 14175 . C G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:145,182,0,1 0/0:.:328:327:1:0.3%:145,182,0,1 -Example1_ref 14176 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:144,185,0,0 0/0:.:329:329:0:0%:144,185,0,0 -Example1_ref 14177 . C . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:141,184,0,0 0/0:.:325:325:0:0%:141,184,0,0 -Example1_ref 14178 . A G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:1:0.31%:142,183,0,1 0/0:.:327:325:1:0.31%:142,183,0,1 -Example1_ref 14179 . GA G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:1:0.31%:143,182,0,1 0/0:.:327:325:1:0.31%:143,182,0,1 -Example1_ref 14180 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:333:0:0%:144,189,0,0 0/0:.:334:333:0:0%:144,189,0,0 -Example1_ref 14181 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:150,190,0,0 0/0:.:340:340:0:0%:150,190,0,0 -Example1_ref 14182 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:149,186,0,0 0/0:.:335:335:0:0%:149,186,0,0 -Example1_ref 14183 . C . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:148,177,0,0 0/0:.:325:325:0:0%:148,177,0,0 -Example1_ref 14184 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:151,187,0,0 0/0:.:338:338:0:0%:151,187,0,0 -Example1_ref 14185 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:150,191,0,0 0/0:.:341:341:0:0%:150,191,0,0 -Example1_ref 14186 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:151,197,0,0 0/0:.:348:348:0:0%:151,197,0,0 -Example1_ref 14187 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:0:0%:151,198,0,0 0/0:.:350:349:0:0%:151,198,0,0 -Example1_ref 14188 . C . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:345:0:0%:149,196,0,0 0/0:.:347:345:0:0%:149,196,0,0 -Example1_ref 14189 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:147,187,0,0 0/0:.:334:334:0:0%:147,187,0,0 -Example1_ref 14190 . G . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:153,186,0,0 0/0:.:339:339:0:0%:153,186,0,0 -Example1_ref 14191 . G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:154,183,0,0 0/0:.:337:337:0:0%:154,183,0,0 -Example1_ref 14192 . G T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:153,187,1,0 0/0:.:341:340:1:0.29%:153,187,1,0 -Example1_ref 14193 . T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:162,188,0,0 0/0:.:350:350:0:0%:162,188,0,0 -Example1_ref 14194 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:163,191,0,0 0/0:.:354:354:0:0%:163,191,0,0 -Example1_ref 14195 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:156,192,0,0 0/0:.:348:348:0:0%:156,192,0,0 -Example1_ref 14196 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:155,192,0,0 0/0:.:347:347:0:0%:155,192,0,0 -Example1_ref 14197 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:153,194,0,0 0/0:.:347:347:0:0%:153,194,0,0 -Example1_ref 14198 . G T . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:1:0.29%:154,192,1,0 0/0:.:347:346:1:0.29%:154,192,1,0 -Example1_ref 14199 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:155,184,0,0 0/0:.:339:339:0:0%:155,184,0,0 -Example1_ref 14200 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:156,186,0,0 0/0:.:342:342:0:0%:156,186,0,0 -Example1_ref 14201 . C A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:1:0.3%:151,181,0,1 0/0:.:333:332:1:0.3%:151,181,0,1 -Example1_ref 14202 . T . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:151,181,0,0 0/0:.:332:332:0:0%:151,181,0,0 -Example1_ref 14203 . G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:162,181,0,0 0/0:.:343:343:0:0%:162,181,0,0 -Example1_ref 14204 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:165,174,0,0 0/0:.:339:339:0:0%:165,174,0,0 -Example1_ref 14205 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:161,176,0,0 0/0:.:337:337:0:0%:161,176,0,0 -Example1_ref 14206 . C . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:160,173,0,0 0/0:.:333:333:0:0%:160,173,0,0 -Example1_ref 14207 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:162,177,0,0 0/0:.:339:339:0:0%:162,177,0,0 -Example1_ref 14208 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:161,179,0,0 0/0:.:340:340:0:0%:161,179,0,0 -Example1_ref 14209 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:158,179,0,0 0/0:.:337:337:0:0%:158,179,0,0 -Example1_ref 14210 . G . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:162,176,0,0 0/0:.:338:338:0:0%:162,176,0,0 -Example1_ref 14211 . G A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:157,169,0,1 0/0:.:327:326:1:0.31%:157,169,0,1 -Example1_ref 14212 . G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:161,175,0,0 0/0:.:336:336:0:0%:161,175,0,0 -Example1_ref 14213 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:159,173,0,0 0/0:.:332:332:0:0%:159,173,0,0 -Example1_ref 14214 . A G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:1:0.3%:156,173,0,1 0/0:.:330:329:1:0.3%:156,173,0,1 -Example1_ref 14215 . T A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:159,167,0,1 0/0:.:327:326:1:0.31%:159,167,0,1 -Example1_ref 14216 . C A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:1:0.31%:160,165,0,1 0/0:.:327:325:1:0.31%:160,165,0,1 -Example1_ref 14217 . C . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:157,175,0,0 0/0:.:332:332:0:0%:157,175,0,0 -Example1_ref 14218 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:158,175,0,0 0/0:.:333:333:0:0%:158,175,0,0 -Example1_ref 14219 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:159,175,0,0 0/0:.:334:334:0:0%:159,175,0,0 -Example1_ref 14220 . A C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:153,175,1,0 0/0:.:329:328:1:0.3%:153,175,1,0 -Example1_ref 14221 . T C . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:1:0.3%:157,172,1,0 0/0:.:330:329:1:0.3%:157,172,1,0 -Example1_ref 14222 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:158,171,0,0 0/0:.:329:329:0:0%:158,171,0,0 -Example1_ref 14223 . C . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:152,171,0,0 0/0:.:323:323:0:0%:152,171,0,0 -Example1_ref 14224 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:157,176,0,0 0/0:.:333:333:0:0%:157,176,0,0 -Example1_ref 14225 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:155,176,0,0 0/0:.:331:331:0:0%:155,176,0,0 -Example1_ref 14226 . C A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:151,174,0,1 0/0:.:326:325:1:0.31%:151,174,0,1 -Example1_ref 14227 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:154,175,0,0 0/0:.:329:329:0:0%:154,175,0,0 -Example1_ref 14228 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:150,175,0,0 0/0:.:325:325:0:0%:150,175,0,0 -Example1_ref 14229 . G . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:148,172,0,0 0/0:.:320:320:0:0%:148,172,0,0 -Example1_ref 14230 . G A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=6.881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:312:2:0.64%:141,171,2,0 0/0:.:314:312:2:0.64%:141,171,2,0 -Example1_ref 14231 . A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:144,173,0,0 0/0:.:317:317:0:0%:144,173,0,0 -Example1_ref 14232 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:144,171,0,0 0/0:.:315:315:0:0%:144,171,0,0 -Example1_ref 14233 . A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:148,174,0,0 0/0:.:322:322:0:0%:148,174,0,0 -Example1_ref 14234 . G GCTGTCT . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:147,173,1,0 0/0:.:321:320:1:0.31%:147,173,1,0 -Example1_ref 14235 . GA G . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:1:0.31%:147,171,1,0 0/0:.:319:318:1:0.31%:147,171,1,0 -Example1_ref 14236 . A ACTGTC . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:142,173,1,0 0/0:.:316:315:1:0.32%:142,173,1,0 -Example1_ref 14237 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:142,173,0,0 0/0:.:315:315:0:0%:142,173,0,0 -Example1_ref 14238 . A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:141,173,0,0 0/0:.:314:314:0:0%:141,173,0,0 -Example1_ref 14239 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:142,167,0,0 0/0:.:309:309:0:0%:142,167,0,0 -Example1_ref 14240 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:140,175,0,0 0/0:.:315:315:0:0%:140,175,0,0 -Example1_ref 14241 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:129,174,0,0 0/0:.:303:303:0:0%:129,174,0,0 -Example1_ref 14242 . G . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:124,174,0,0 0/0:.:298:298:0:0%:124,174,0,0 -Example1_ref 14243 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:119,174,0,0 0/0:.:293:293:0:0%:119,174,0,0 -Example1_ref 14244 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:121,165,0,0 0/0:.:286:286:0:0%:121,165,0,0 -Example1_ref 14245 . A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:123,163,0,0 0/0:.:286:286:0:0%:123,163,0,0 -Example1_ref 14246 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:124,164,0,0 0/0:.:288:288:0:0%:124,164,0,0 -Example1_ref 14247 . G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:125,162,0,0 0/0:.:287:287:0:0%:125,162,0,0 -Example1_ref 14248 . T . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:125,161,0,0 0/0:.:286:286:0:0%:125,161,0,0 -Example1_ref 14249 . G A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:122,162,0,1 0/0:.:285:284:1:0.35%:122,162,0,1 -Example1_ref 14250 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:122,160,0,0 0/0:.:282:282:0:0%:122,160,0,0 -Example1_ref 14251 . G . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:120,161,0,0 0/0:.:281:281:0:0%:120,161,0,0 -Example1_ref 14252 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:121,161,0,0 0/0:.:282:282:0:0%:121,161,0,0 -Example1_ref 14253 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:126,156,0,0 0/0:.:282:282:0:0%:126,156,0,0 -Example1_ref 14254 . CT C . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.5044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:284:1:0.35%:127,157,1,0 0/0:.:286:284:1:0.35%:127,157,1,0 -Example1_ref 14255 . T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:126,157,0,0 0/0:.:284:283:0:0%:126,157,0,0 -Example1_ref 14256 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:0:0%:125,162,0,0 0/0:.:288:287:0:0%:125,162,0,0 -Example1_ref 14257 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:0:0%:129,159,0,0 0/0:.:289:288:0:0%:129,159,0,0 -Example1_ref 14258 . A T . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=7.5043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:130,163,0,1 0/0:.:294:293:1:0.34%:130,163,0,1 -Example1_ref 14259 . TA T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:129,166,0,1 0/0:.:296:295:1:0.34%:129,166,0,1 -Example1_ref 14260 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:129,171,0,0 0/0:.:301:300:0:0%:129,171,0,0 -Example1_ref 14261 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:125,173,0,0 0/0:.:298:298:0:0%:125,173,0,0 -Example1_ref 14262 . G T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:128,166,0,2 0/0:.:296:294:2:0.68%:128,166,0,2 -Example1_ref 14263 . G . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:128,172,0,0 0/0:.:300:300:0:0%:128,172,0,0 -Example1_ref 14264 . A G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=6.8813E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:2:0.67%:124,171,2,0 0/0:.:297:295:2:0.67%:124,171,2,0 -Example1_ref 14265 . G . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:125,175,0,0 0/0:.:300:300:0:0%:125,175,0,0 -Example1_ref 14266 . T A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.5042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:124,170,0,1 0/0:.:295:294:1:0.34%:124,170,0,1 -Example1_ref 14267 . G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:299:0:0%:133,166,0,0 0/0:.:301:299:0:0%:133,166,0,0 -Example1_ref 14268 . A ACAG . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:133,172,0,1 0/0:.:306:305:1:0.33%:133,172,0,1 -Example1_ref 14269 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:0:0%:132,176,0,0 0/0:.:309:308:0:0%:132,176,0,0 -Example1_ref 14270 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:130,175,0,0 0/0:.:305:305:0:0%:130,175,0,0 -Example1_ref 14271 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:130,178,0,0 0/0:.:308:308:0:0%:130,178,0,0 -Example1_ref 14272 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:131,177,0,0 0/0:.:308:308:0:0%:131,177,0,0 -Example1_ref 14273 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:131,177,0,0 0/0:.:308:308:0:0%:131,177,0,0 -Example1_ref 14274 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:127,177,0,0 0/0:.:304:304:0:0%:127,177,0,0 -Example1_ref 14275 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:0:0%:128,173,0,0 0/0:.:302:301:0:0%:128,173,0,0 -Example1_ref 14276 . G . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:127,171,0,0 0/0:.:298:298:0:0%:127,171,0,0 -Example1_ref 14277 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:127,180,0,0 0/0:.:307:307:0:0%:127,180,0,0 -Example1_ref 14278 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:125,180,0,0 0/0:.:305:305:0:0%:125,180,0,0 -Example1_ref 14279 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:121,178,0,0 0/0:.:299:299:0:0%:121,178,0,0 -Example1_ref 14280 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:122,178,0,0 0/0:.:301:300:0:0%:122,178,0,0 -Example1_ref 14281 . G . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:127,177,0,0 0/0:.:304:304:0:0%:127,177,0,0 -Example1_ref 14282 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:125,177,0,0 0/0:.:302:302:0:0%:125,177,0,0 -Example1_ref 14283 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:128,182,0,0 0/0:.:310:310:0:0%:128,182,0,0 -Example1_ref 14284 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:127,184,0,0 0/0:.:311:311:0:0%:127,184,0,0 -Example1_ref 14285 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:123,184,0,0 0/0:.:307:307:0:0%:123,184,0,0 -Example1_ref 14286 . T G . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:307:1:0.32%:125,182,1,0 0/0:.:309:307:1:0.32%:125,182,1,0 -Example1_ref 14287 . C . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:126,181,0,0 0/0:.:307:307:0:0%:126,181,0,0 -Example1_ref 14288 . G . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:126,185,0,0 0/0:.:311:311:0:0%:126,185,0,0 -Example1_ref 14289 . G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:132,185,0,0 0/0:.:317:317:0:0%:132,185,0,0 -Example1_ref 14290 . A T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:128,183,1,0 0/0:.:312:311:1:0.32%:128,183,1,0 -Example1_ref 14291 . T . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:130,186,0,0 0/0:.:316:316:0:0%:130,186,0,0 -Example1_ref 14292 . T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:129,188,0,0 0/0:.:317:317:0:0%:129,188,0,0 -Example1_ref 14293 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:132,181,0,0 0/0:.:313:313:0:0%:132,181,0,0 -Example1_ref 14294 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:0:0%:138,182,0,0 0/0:.:321:320:0:0%:138,182,0,0 -Example1_ref 14295 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:139,186,0,0 0/0:.:325:325:0:0%:139,186,0,0 -Example1_ref 14296 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:137,188,0,0 0/0:.:325:325:0:0%:137,188,0,0 -Example1_ref 14297 . C A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:327:1:0.3%:139,188,0,1 0/0:.:329:327:1:0.3%:139,188,0,1 -Example1_ref 14298 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:319:0:0%:137,182,0,0 0/0:.:320:319:0:0%:137,182,0,0 -Example1_ref 14299 . T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:144,183,0,0 0/0:.:327:327:0:0%:144,183,0,0 -Example1_ref 14300 . T . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:142,183,0,0 0/0:.:325:325:0:0%:142,183,0,0 -Example1_ref 14301 . G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:153,183,0,0 0/0:.:336:336:0:0%:153,183,0,0 -Example1_ref 14302 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:156,182,0,0 0/0:.:338:338:0:0%:156,182,0,0 -Example1_ref 14303 . G . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:163,191,0,0 0/0:.:354:354:0:0%:163,191,0,0 -Example1_ref 14304 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:161,192,0,0 0/0:.:353:353:0:0%:161,192,0,0 -Example1_ref 14305 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:160,194,0,0 0/0:.:354:354:0:0%:160,194,0,0 -Example1_ref 14306 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:159,194,0,0 0/0:.:353:353:0:0%:159,194,0,0 -Example1_ref 14307 . T TG . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:157,193,1,0 0/0:.:351:350:1:0.28%:157,193,1,0 -Example1_ref 14308 . G . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:161,188,0,0 0/0:.:349:349:0:0%:161,188,0,0 -Example1_ref 14309 . G GCTGTC . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:160,191,1,0 0/0:.:352:351:1:0.28%:160,191,1,0 -Example1_ref 14310 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:156,187,0,0 0/0:.:343:343:0:0%:156,187,0,0 -Example1_ref 14311 . G A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:158,182,0,1 0/0:.:341:340:1:0.29%:158,182,0,1 -Example1_ref 14312 . G T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:333:1:0.3%:154,179,1,0 0/0:.:334:333:1:0.3%:154,179,1,0 -Example1_ref 14313 . G A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:154,177,0,1 0/0:.:332:331:1:0.3%:154,177,0,1 -Example1_ref 14314 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:158,184,0,0 0/0:.:342:342:0:0%:158,184,0,0 -Example1_ref 14315 . G . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:165,180,0,0 0/0:.:345:345:0:0%:165,180,0,0 -Example1_ref 14316 . C . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:161,173,0,0 0/0:.:334:334:0:0%:161,173,0,0 -Example1_ref 14317 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:158,185,0,0 0/0:.:343:343:0:0%:158,185,0,0 -Example1_ref 14318 . A . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:160,184,0,0 0/0:.:344:344:0:0%:160,184,0,0 -Example1_ref 14319 . T A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:157,182,0,1 0/0:.:340:339:1:0.29%:157,182,0,1 -Example1_ref 14320 . C . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:159,183,0,0 0/0:.:342:342:0:0%:159,183,0,0 -Example1_ref 14321 . G A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=6.8806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:335:2:0.59%:160,175,1,1 0/0:.:337:335:2:0.59%:160,175,1,1 -Example1_ref 14322 . G T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:345:1:0.29%:158,187,1,0 0/0:.:346:345:1:0.29%:158,187,1,0 -Example1_ref 14323 . T . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:160,187,0,0 0/0:.:347:347:0:0%:160,187,0,0 -Example1_ref 14324 . A G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:154,181,1,0 0/0:.:336:335:1:0.3%:154,181,1,0 -Example1_ref 14325 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:155,179,0,0 0/0:.:334:334:0:0%:155,179,0,0 -Example1_ref 14326 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:161,182,0,0 0/0:.:343:343:0:0%:161,182,0,0 -Example1_ref 14327 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:159,180,0,0 0/0:.:339:339:0:0%:159,180,0,0 -Example1_ref 14328 . C . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:155,178,0,0 0/0:.:333:333:0:0%:155,178,0,0 -Example1_ref 14329 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:159,179,0,0 0/0:.:338:338:0:0%:159,179,0,0 -Example1_ref 14330 . G A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:333:1:0.3%:154,179,1,0 0/0:.:334:333:1:0.3%:154,179,1,0 -Example1_ref 14331 . A . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:155,181,0,0 0/0:.:336:336:0:0%:155,181,0,0 -Example1_ref 14332 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:154,176,0,0 0/0:.:330:330:0:0%:154,176,0,0 -Example1_ref 14333 . G . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:153,178,0,0 0/0:.:331:331:0:0%:153,178,0,0 -Example1_ref 14334 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:152,177,0,0 0/0:.:329:329:0:0%:152,177,0,0 -Example1_ref 14335 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:151,179,0,0 0/0:.:330:330:0:0%:151,179,0,0 -Example1_ref 14336 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:154,178,0,0 0/0:.:332:332:0:0%:154,178,0,0 -Example1_ref 14337 . C . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:154,182,0,0 0/0:.:336:336:0:0%:154,182,0,0 -Example1_ref 14338 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:155,180,0,0 0/0:.:335:335:0:0%:155,180,0,0 -Example1_ref 14339 . G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:159,178,0,0 0/0:.:337:337:0:0%:159,178,0,0 -Example1_ref 14340 . T A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:155,179,0,1 0/0:.:335:334:1:0.3%:155,179,0,1 -Example1_ref 14341 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:160,173,0,0 0/0:.:333:333:0:0%:160,173,0,0 -Example1_ref 14342 . C . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:154,173,0,0 0/0:.:327:327:0:0%:154,173,0,0 -Example1_ref 14343 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:159,180,0,0 0/0:.:339:339:0:0%:159,180,0,0 -Example1_ref 14344 . A . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:160,184,0,0 0/0:.:344:344:0:0%:160,184,0,0 -Example1_ref 14345 . C A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:1:0.29%:162,180,0,1 0/0:.:343:342:1:0.29%:162,180,0,1 -Example1_ref 14346 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:163,184,0,0 0/0:.:347:347:0:0%:163,184,0,0 -Example1_ref 14347 . T C . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:163,184,0,1 0/0:.:348:347:1:0.29%:163,184,0,1 -Example1_ref 14348 . G T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:159,181,1,0 0/0:.:341:340:1:0.29%:159,181,1,0 -Example1_ref 14349 . A AGACAG . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:162,177,0,1 0/0:.:340:339:1:0.29%:162,177,0,1 -Example1_ref 14350 . A T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:340:1:0.29%:158,182,1,0 0/0:.:342:340:1:0.29%:158,182,1,0 -Example1_ref 14351 . C . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:166,180,0,0 0/0:.:346:346:0:0%:166,180,0,0 -Example1_ref 14352 . A AG . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:165,182,0,1 0/0:.:348:347:1:0.29%:165,182,0,1 -Example1_ref 14353 . C A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:180,178,0,1 0/0:.:359:358:1:0.28%:180,178,0,1 -Example1_ref 14354 . T . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:176,183,0,0 0/0:.:359:359:0:0%:176,183,0,0 -Example1_ref 14355 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:179,183,0,0 0/0:.:362:362:0:0%:179,183,0,0 -Example1_ref 14356 . T . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:179,183,0,0 0/0:.:362:362:0:0%:179,183,0,0 -Example1_ref 14357 . A G . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:176,178,0,1 0/0:.:355:354:1:0.28%:176,178,0,1 -Example1_ref 14358 . G GCTGTC . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:176,179,1,0 0/0:.:356:355:1:0.28%:176,179,1,0 -Example1_ref 14359 . T . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:178,179,0,0 0/0:.:357:357:0:0%:178,179,0,0 -Example1_ref 14360 . GT G . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:354:1:0.28%:176,178,0,1 0/0:.:357:354:1:0.28%:176,178,0,1 -Example1_ref 14361 . T . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:176,173,0,0 0/0:.:349:349:0:0%:176,173,0,0 -Example1_ref 14362 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:0:0%:174,161,0,0 0/0:.:336:335:0:0%:174,161,0,0 -Example1_ref 14363 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:176,165,0,0 0/0:.:341:341:0:0%:176,165,0,0 -Example1_ref 14364 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:176,161,0,0 0/0:.:337:337:0:0%:176,161,0,0 -Example1_ref 14365 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:173,158,0,0 0/0:.:331:331:0:0%:173,158,0,0 -Example1_ref 14366 . A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:174,161,0,0 0/0:.:335:335:0:0%:174,161,0,0 -Example1_ref 14367 . G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:171,157,0,0 0/0:.:328:328:0:0%:171,157,0,0 -Example1_ref 14368 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:0:0%:165,158,0,0 0/0:.:324:323:0:0%:165,158,0,0 -Example1_ref 14369 . A C . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:173,154,0,1 0/0:.:328:327:1:0.3%:173,154,0,1 -Example1_ref 14370 . T A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:174,152,0,1 0/0:.:327:326:1:0.31%:174,152,0,1 -Example1_ref 14371 . T G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:170,157,0,1 0/0:.:328:327:1:0.3%:170,157,0,1 -Example1_ref 14372 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:172,168,0,0 0/0:.:340:340:0:0%:172,168,0,0 -Example1_ref 14373 . C . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:171,166,0,0 0/0:.:337:337:0:0%:171,166,0,0 -Example1_ref 14374 . A ATCTGTC . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:174,170,1,0 0/0:.:345:344:1:0.29%:174,170,1,0 -Example1_ref 14375 . T . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:172,172,0,0 0/0:.:344:344:0:0%:172,172,0,0 -Example1_ref 14376 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:168,170,0,0 0/0:.:338:338:0:0%:168,170,0,0 -Example1_ref 14377 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:173,165,0,0 0/0:.:338:338:0:0%:173,165,0,0 -Example1_ref 14378 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:173,170,0,0 0/0:.:343:343:0:0%:173,170,0,0 -Example1_ref 14379 . T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:172,176,0,0 0/0:.:348:348:0:0%:172,176,0,0 -Example1_ref 14380 . G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:163,173,0,0 0/0:.:336:336:0:0%:163,173,0,0 -Example1_ref 14381 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:160,178,0,0 0/0:.:338:338:0:0%:160,178,0,0 -Example1_ref 14382 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:164,171,0,0 0/0:.:335:335:0:0%:164,171,0,0 -Example1_ref 14383 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:165,172,0,0 0/0:.:337:337:0:0%:165,172,0,0 -Example1_ref 14384 . G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:165,171,0,0 0/0:.:336:336:0:0%:165,171,0,0 -Example1_ref 14385 . G . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:0:0%:164,174,0,0 0/0:.:339:338:0:0%:164,174,0,0 -Example1_ref 14386 . A G . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:336:1:0.3%:160,176,0,1 0/0:.:338:336:1:0.3%:160,176,0,1 -Example1_ref 14387 . G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:0:0%:159,177,0,0 0/0:.:337:336:0:0%:159,177,0,0 -Example1_ref 14388 . A G . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:167,180,0,1 0/0:.:348:347:1:0.29%:167,180,0,1 -Example1_ref 14389 . T . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:169,182,0,0 0/0:.:351:351:0:0%:169,182,0,0 -Example1_ref 14390 . G . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:166,181,0,0 0/0:.:347:347:0:0%:166,181,0,0 -Example1_ref 14391 . A G . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:165,182,0,1 0/0:.:348:347:1:0.29%:165,182,0,1 -Example1_ref 14392 . T . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:169,184,0,0 0/0:.:353:353:0:0%:169,184,0,0 -Example1_ref 14393 . G . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:164,178,0,0 0/0:.:342:342:0:0%:164,178,0,0 -Example1_ref 14394 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:161,181,0,0 0/0:.:342:342:0:0%:161,181,0,0 -Example1_ref 14395 . T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:166,182,0,0 0/0:.:348:348:0:0%:166,182,0,0 -Example1_ref 14396 . G C . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:169,181,0,1 0/0:.:351:350:1:0.28%:169,181,0,1 -Example1_ref 14397 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:170,184,0,0 0/0:.:354:354:0:0%:170,184,0,0 -Example1_ref 14398 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:171,184,0,0 0/0:.:355:355:0:0%:171,184,0,0 -Example1_ref 14399 . G . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:173,183,0,0 0/0:.:356:356:0:0%:173,183,0,0 -Example1_ref 14400 . T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:172,180,0,0 0/0:.:352:352:0:0%:172,180,0,0 -Example1_ref 14401 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:173,182,0,0 0/0:.:355:355:0:0%:173,182,0,0 -Example1_ref 14402 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:173,182,0,0 0/0:.:355:355:0:0%:173,182,0,0 -Example1_ref 14403 . T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:172,180,0,0 0/0:.:352:352:0:0%:172,180,0,0 -Example1_ref 14404 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:169,180,0,0 0/0:.:349:349:0:0%:169,180,0,0 -Example1_ref 14405 . G . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:170,182,0,0 0/0:.:352:352:0:0%:170,182,0,0 -Example1_ref 14406 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:171,183,0,0 0/0:.:354:354:0:0%:171,183,0,0 -Example1_ref 14407 . T . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:169,182,0,0 0/0:.:351:351:0:0%:169,182,0,0 -Example1_ref 14408 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:171,184,0,0 0/0:.:355:355:0:0%:171,184,0,0 -Example1_ref 14409 . C . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:168,182,0,0 0/0:.:350:350:0:0%:168,182,0,0 -Example1_ref 14410 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:169,185,0,0 0/0:.:354:354:0:0%:169,185,0,0 -Example1_ref 14411 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:169,184,0,0 0/0:.:353:353:0:0%:169,184,0,0 -Example1_ref 14412 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:165,183,0,0 0/0:.:348:348:0:0%:165,183,0,0 -Example1_ref 14413 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:167,183,0,0 0/0:.:350:350:0:0%:167,183,0,0 -Example1_ref 14414 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:171,184,0,0 0/0:.:355:355:0:0%:171,184,0,0 -Example1_ref 14415 . T . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:175,178,0,0 0/0:.:353:353:0:0%:175,178,0,0 -Example1_ref 14416 . T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:175,183,0,0 0/0:.:358:358:0:0%:175,183,0,0 -Example1_ref 14417 . A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:174,185,0,0 0/0:.:359:359:0:0%:174,185,0,0 -Example1_ref 14418 . T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:173,183,0,0 0/0:.:356:356:0:0%:173,183,0,0 -Example1_ref 14419 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:176,185,0,0 0/0:.:361:361:0:0%:176,185,0,0 -Example1_ref 14420 . C A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=6.8803E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:352:2:0.56%:175,177,0,2 0/0:.:354:352:2:0.56%:175,177,0,2 -Example1_ref 14421 . C T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:168,183,1,0 0/0:.:352:351:1:0.28%:168,183,1,0 -Example1_ref 14422 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:172,183,0,0 0/0:.:355:355:0:0%:172,183,0,0 -Example1_ref 14423 . AC A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:177,182,0,1 0/0:.:360:359:1:0.28%:177,182,0,1 -Example1_ref 14424 . C A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:352:1:0.28%:172,180,1,0 0/0:.:354:352:1:0.28%:172,180,1,0 -Example1_ref 14425 . A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:174,185,0,0 0/0:.:359:359:0:0%:174,185,0,0 -Example1_ref 14426 . A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:173,183,0,0 0/0:.:356:356:0:0%:173,183,0,0 -Example1_ref 14427 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:174,180,0,0 0/0:.:354:354:0:0%:174,180,0,0 -Example1_ref 14428 . C . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:171,179,0,0 0/0:.:350:350:0:0%:171,179,0,0 -Example1_ref 14429 . A T . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:173,177,1,0 0/0:.:351:350:1:0.28%:173,177,1,0 -Example1_ref 14430 . C . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:174,171,0,0 0/0:.:345:345:0:0%:174,171,0,0 -Example1_ref 14431 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:178,167,0,0 0/0:.:345:345:0:0%:178,167,0,0 -Example1_ref 14432 . C . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:175,167,0,0 0/0:.:342:342:0:0%:175,167,0,0 -Example1_ref 14433 . C . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:175,171,0,0 0/0:.:346:346:0:0%:175,171,0,0 -Example1_ref 14434 . G . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:172,175,0,0 0/0:.:347:347:0:0%:172,175,0,0 -Example1_ref 14435 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:166,174,0,0 0/0:.:340:340:0:0%:166,174,0,0 -Example1_ref 14436 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:170,177,0,0 0/0:.:347:347:0:0%:170,177,0,0 -Example1_ref 14437 . T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:176,174,0,0 0/0:.:350:350:0:0%:176,174,0,0 -Example1_ref 14438 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:171,174,0,0 0/0:.:345:345:0:0%:171,174,0,0 -Example1_ref 14439 . G T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:172,172,1,0 0/0:.:345:344:1:0.29%:172,172,1,0 -Example1_ref 14440 . G . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:176,174,0,0 0/0:.:350:350:0:0%:176,174,0,0 -Example1_ref 14441 . T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:0:0%:183,172,0,0 0/0:.:356:355:0:0%:183,172,0,0 -Example1_ref 14442 . C G . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:180,169,0,1 0/0:.:350:349:1:0.29%:180,169,0,1 -Example1_ref 14443 . T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:177,175,0,0 0/0:.:352:352:0:0%:177,175,0,0 -Example1_ref 14444 . A . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:180,177,0,0 0/0:.:357:357:0:0%:180,177,0,0 -Example1_ref 14445 . G C . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:350:1:0.28%:175,175,1,0 0/0:.:352:350:1:0.28%:175,175,1,0 -Example1_ref 14446 . A T . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:173,175,1,0 0/0:.:349:348:1:0.29%:173,175,1,0 -Example1_ref 14447 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:170,176,0,0 0/0:.:346:346:0:0%:170,176,0,0 -Example1_ref 14448 . TA T . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:182,176,1,0 0/0:.:359:358:1:0.28%:182,176,1,0 -Example1_ref 14449 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:0:0%:180,169,0,0 0/0:.:350:349:0:0%:180,169,0,0 -Example1_ref 14450 . C . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:186,166,0,0 0/0:.:352:352:0:0%:186,166,0,0 -Example1_ref 14451 . T . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:186,163,0,0 0/0:.:349:349:0:0%:186,163,0,0 -Example1_ref 14452 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:182,163,0,0 0/0:.:345:345:0:0%:182,163,0,0 -Example1_ref 14453 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:184,155,0,0 0/0:.:339:339:0:0%:184,155,0,0 -Example1_ref 14454 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:184,157,0,0 0/0:.:341:341:0:0%:184,157,0,0 -Example1_ref 14455 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:183,154,0,0 0/0:.:337:337:0:0%:183,154,0,0 -Example1_ref 14456 . C G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:179,152,0,1 0/0:.:332:331:1:0.3%:179,152,0,1 -Example1_ref 14457 . T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:182,149,0,0 0/0:.:331:331:0:0%:182,149,0,0 -Example1_ref 14458 . G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:190,152,0,0 0/0:.:343:342:0:0%:190,152,0,0 -Example1_ref 14459 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:191,152,0,0 0/0:.:343:343:0:0%:191,152,0,0 -Example1_ref 14460 . A G . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:189,151,0,1 0/0:.:341:340:1:0.29%:189,151,0,1 -Example1_ref 14461 . T G . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:189,150,1,0 0/0:.:340:339:1:0.29%:189,150,1,0 -Example1_ref 14462 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:188,150,0,0 0/0:.:338:338:0:0%:188,150,0,0 -Example1_ref 14463 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:185,152,0,0 0/0:.:337:337:0:0%:185,152,0,0 -Example1_ref 14464 . G GTTCTGTCTC . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:1:0.29%:192,150,1,0 0/0:.:343:342:1:0.29%:192,150,1,0 -Example1_ref 14465 . T C . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.5036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:343:1:0.29%:195,148,1,0 0/0:.:345:343:1:0.29%:195,148,1,0 -Example1_ref 14466 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:194,145,0,0 0/0:.:339:339:0:0%:194,145,0,0 -Example1_ref 14467 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:202,137,0,0 0/0:.:339:339:0:0%:202,137,0,0 -Example1_ref 14468 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:202,136,0,0 0/0:.:338:338:0:0%:202,136,0,0 -Example1_ref 14469 . A . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:201,135,0,0 0/0:.:336:336:0:0%:201,135,0,0 -Example1_ref 14470 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:201,134,0,0 0/0:.:335:335:0:0%:201,134,0,0 -Example1_ref 14471 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:195,134,0,0 0/0:.:329:329:0:0%:195,134,0,0 -Example1_ref 14472 . G T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=7.5039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:190,130,1,0 0/0:.:321:320:1:0.31%:190,130,1,0 -Example1_ref 14473 . G C . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.5041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:304:1:0.33%:181,123,1,0 0/0:.:306:304:1:0.33%:181,123,1,0 -Example1_ref 14474 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:190,126,0,0 0/0:.:316:316:0:0%:190,126,0,0 -Example1_ref 14475 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:193,131,0,0 0/0:.:324:324:0:0%:193,131,0,0 -Example1_ref 14476 . A . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:196,130,0,0 0/0:.:326:326:0:0%:196,130,0,0 -Example1_ref 14477 . G . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:203,130,0,0 0/0:.:333:333:0:0%:203,130,0,0 -Example1_ref 14478 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:204,130,0,0 0/0:.:334:334:0:0%:204,130,0,0 -Example1_ref 14479 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:203,134,0,0 0/0:.:337:337:0:0%:203,134,0,0 -Example1_ref 14480 . G . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:197,135,0,0 0/0:.:333:332:0:0%:197,135,0,0 -Example1_ref 14481 . TAA T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.5037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:203,131,0,1 0/0:.:335:334:1:0.3%:203,131,0,1 -Example1_ref 14482 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:201,131,0,0 0/0:.:333:332:0:0%:201,131,0,0 -Example1_ref 14483 . A AGAGACAG . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=7.5038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:331:1:0.3%:199,132,0,1 0/0:.:333:331:1:0.3%:199,132,0,1 -Example1_ref 14484 . G GCTTTC . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:361:1:0.28%:227,134,1,0 0/0:.:363:361:1:0.28%:227,134,1,0 -Example1_ref 14485 . TATA T . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:1:0.27%:230,144,1,0 0/0:.:375:374:1:0.27%:230,144,1,0 -Example1_ref 14486 . A G . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:371:1:0.27%:226,145,0,1 0/0:.:373:371:1:0.27%:226,145,0,1 -Example1_ref 14487 . T . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:0:0%:227,143,0,0 0/0:.:371:370:0:0%:227,143,0,0 -Example1_ref 14488 . A AAGAGACAG . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:228,142,0,1 0/0:.:371:370:1:0.27%:228,142,0,1 -Example1_ref 14489 . A . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:224,141,0,0 0/0:.:365:365:0:0%:224,141,0,0 -Example1_ref 14490 . T . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:219,144,0,0 0/0:.:363:363:0:0%:219,144,0,0 -Example1_ref 14491 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:215,145,0,0 0/0:.:360:360:0:0%:215,145,0,0 -Example1_ref 14492 . T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:0:0%:208,141,0,0 0/0:.:350:349:0:0%:208,141,0,0 -Example1_ref 14493 . C . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:0:0%:207,128,0,0 0/0:.:336:335:0:0%:207,128,0,0 -Example1_ref 14494 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:0:0%:212,134,0,0 0/0:.:347:346:0:0%:212,134,0,0 -Example1_ref 14495 . C . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:0:0%:216,134,0,0 0/0:.:351:350:0:0%:216,134,0,0 -Example1_ref 14496 . T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:353:0:0%:217,136,0,0 0/0:.:354:353:0:0%:217,136,0,0 -Example1_ref 14497 . T C . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=7.5035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:353:1:0.28%:216,137,1,0 0/0:.:355:353:1:0.28%:216,137,1,0 -Example1_ref 14498 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:0:0%:211,135,0,0 0/0:.:347:346:0:0%:211,135,0,0 -Example1_ref 14499 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:214,138,0,0 0/0:.:352:352:0:0%:214,138,0,0 -Example1_ref 14500 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:209,137,0,0 0/0:.:346:346:0:0%:209,137,0,0 -Example1_ref 14501 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:212,137,0,0 0/0:.:349:349:0:0%:212,137,0,0 -Example1_ref 14502 . C . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:224,139,0,0 0/0:.:363:363:0:0%:224,139,0,0 -Example1_ref 14503 . T . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:229,134,0,0 0/0:.:363:363:0:0%:229,134,0,0 -Example1_ref 14504 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:231,139,0,0 0/0:.:370:370:0:0%:231,139,0,0 -Example1_ref 14505 . C . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:229,139,0,0 0/0:.:368:368:0:0%:229,139,0,0 -Example1_ref 14506 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:230,140,0,0 0/0:.:370:370:0:0%:230,140,0,0 -Example1_ref 14507 . A . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:227,140,0,0 0/0:.:367:367:0:0%:227,140,0,0 -Example1_ref 14508 . A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:228,143,0,0 0/0:.:371:371:0:0%:228,143,0,0 -Example1_ref 14509 . T . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:228,135,0,0 0/0:.:363:363:0:0%:228,135,0,0 -Example1_ref 14510 . C . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:229,140,0,0 0/0:.:369:369:0:0%:229,140,0,0 -Example1_ref 14511 . C . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:226,146,0,0 0/0:.:372:372:0:0%:226,146,0,0 -Example1_ref 14512 . T . PASS DP=750;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:230,145,0,0 0/0:.:375:375:0:0%:230,145,0,0 -Example1_ref 14513 . G GTCTCTTATACA . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:368:1:0.27%:224,144,1,0 0/0:.:370:368:1:0.27%:224,144,1,0 -Example1_ref 14514 . C A . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:378:1:0.26%:231,147,0,1 0/0:.:380:378:1:0.26%:231,147,0,1 -Example1_ref 14515 . A . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:231,150,0,0 0/0:.:381:381:0:0%:231,150,0,0 -Example1_ref 14516 . T G . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:372:1:0.27%:228,144,0,1 0/0:.:373:372:1:0.27%:228,144,0,1 -Example1_ref 14517 . C . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:230,143,0,0 0/0:.:373:373:0:0%:230,143,0,0 -Example1_ref 14518 . A . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:383:0:0%:228,155,0,0 0/0:.:384:383:0:0%:228,155,0,0 -Example1_ref 14519 . A . PASS DP=784;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:392:392:0:0%:231,161,0,0 0/0:.:392:392:0:0%:231,161,0,0 -Example1_ref 14520 . C A . PASS DP=772;SS=0;SSC=0;GPV=1E0;SPV=7.5032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:230,155,0,1 0/0:.:386:385:1:0.26%:230,155,0,1 -Example1_ref 14521 . A AG . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=7.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:1:0.26%:227,155,0,1 0/0:.:383:382:1:0.26%:227,155,0,1 -Example1_ref 14522 . G T . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:399:1:0.25%:245,154,1,0 0/0:.:400:399:1:0.25%:245,154,1,0 -Example1_ref 14523 . A . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:243,159,0,0 0/0:.:402:402:0:0%:243,159,0,0 -Example1_ref 14524 . A G . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:410:1:0.24%:249,161,0,1 0/0:.:411:410:1:0.24%:249,161,0,1 -Example1_ref 14525 . T . PASS DP=834;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:254,163,0,0 0/0:.:417:417:0:0%:254,163,0,0 -Example1_ref 14526 . T . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:250,165,0,0 0/0:.:415:415:0:0%:250,165,0,0 -Example1_ref 14527 . A . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:251,165,0,0 0/0:.:416:416:0:0%:251,165,0,0 -Example1_ref 14528 . T . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:252,163,0,0 0/0:.:415:415:0:0%:252,163,0,0 -Example1_ref 14529 . A . PASS DP=852;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:426:0:0%:254,172,0,0 0/0:.:426:426:0:0%:254,172,0,0 -Example1_ref 14530 . C A . PASS DP=826;SS=0;SSC=0;GPV=1E0;SPV=6.8796E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:411:2:0.48%:251,160,0,2 0/0:.:413:411:2:0.48%:251,160,0,2 -Example1_ref 14531 . C A . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:417:1:0.24%:252,165,0,1 0/0:.:418:417:1:0.24%:252,165,0,1 -Example1_ref 14532 . T . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:256,168,0,0 0/0:.:424:424:0:0%:256,168,0,0 -Example1_ref 14533 . A . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:254,164,0,0 0/0:.:418:418:0:0%:254,164,0,0 -Example1_ref 14534 . A . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:0:0%:248,171,0,0 0/0:.:420:419:0:0%:248,171,0,0 -Example1_ref 14535 . T . PASS DP=826;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:413:0:0%:250,163,0,0 0/0:.:413:413:0:0%:250,163,0,0 -Example1_ref 14536 . C . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:251,172,0,0 0/0:.:423:423:0:0%:251,172,0,0 -Example1_ref 14537 . T . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:248,175,0,0 0/0:.:423:423:0:0%:248,175,0,0 -Example1_ref 14538 . C . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:245,179,0,0 0/0:.:424:424:0:0%:245,179,0,0 -Example1_ref 14539 . G T . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:431:1:0.23%:242,189,1,0 0/0:.:432:431:1:0.23%:242,189,1,0 -Example1_ref 14540 . A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:232,191,0,0 0/0:.:423:423:0:0%:232,191,0,0 -Example1_ref 14541 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:237,196,0,0 0/0:.:433:433:0:0%:237,196,0,0 -Example1_ref 14542 . A . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:240,194,0,0 0/0:.:434:434:0:0%:240,194,0,0 -Example1_ref 14543 . G . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:426:0:0%:233,193,0,0 0/0:.:427:426:0:0%:233,193,0,0 -Example1_ref 14544 . A . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:423:0:0%:228,195,0,0 0/0:.:425:423:0:0%:228,195,0,0 -Example1_ref 14545 . C A . PASS DP=842;SS=0;SSC=0;GPV=1E0;SPV=6.5681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:416:3:0.72%:235,181,0,3 0/0:.:421:416:3:0.72%:235,181,0,3 -Example1_ref 14546 . G . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:0:0%:235,187,0,0 0/0:.:423:422:0:0%:235,187,0,0 -Example1_ref 14547 . C A . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:413:1:0.24%:234,179,0,1 0/0:.:415:413:1:0.24%:234,179,0,1 -Example1_ref 14548 . A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:237,199,0,0 0/0:.:436:436:0:0%:237,199,0,0 -Example1_ref 14549 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:243,197,0,0 0/0:.:440:440:0:0%:243,197,0,0 -Example1_ref 14550 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:241,199,0,0 0/0:.:440:440:0:0%:241,199,0,0 -Example1_ref 14551 . T . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:259,200,0,0 0/0:.:459:459:0:0%:259,200,0,0 -Example1_ref 14552 . T . PASS DP=930;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:259,206,0,0 0/0:.:465:465:0:0%:259,206,0,0 -Example1_ref 14553 . G . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:481:0:0%:276,205,0,0 0/0:.:484:481:0:0%:276,205,0,0 -Example1_ref 14554 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:279,205,0,0 0/0:.:484:484:0:0%:279,205,0,0 -Example1_ref 14555 . A ACCTGTCT . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:277,210,1,0 0/0:.:488:487:1:0.2%:277,210,1,0 -Example1_ref 14556 . C A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:484:1:0.21%:283,201,0,1 0/0:.:486:484:1:0.21%:283,201,0,1 -Example1_ref 14557 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:286,204,0,0 0/0:.:490:490:0:0%:286,204,0,0 -Example1_ref 14558 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:493:0:0%:289,204,0,0 0/0:.:494:493:0:0%:289,204,0,0 -Example1_ref 14559 . T . PASS DP=1010;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:504:0:0%:297,207,0,0 0/0:.:505:504:0:0%:297,207,0,0 -Example1_ref 14560 . A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:292,206,0,0 0/0:.:498:498:0:0%:292,206,0,0 -Example1_ref 14561 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:293,209,0,0 0/0:.:502:502:0:0%:293,209,0,0 -Example1_ref 14562 . T . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:298,195,0,0 0/0:.:493:493:0:0%:298,195,0,0 -Example1_ref 14563 . G T . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:295,195,1,0 0/0:.:491:490:1:0.2%:295,195,1,0 -Example1_ref 14564 . G T . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:492:2:0.4%:292,200,2,0 0/0:.:494:492:2:0.4%:292,200,2,0 -Example1_ref 14565 . A . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:290,194,0,0 0/0:.:484:484:0:0%:290,194,0,0 -Example1_ref 14566 . A . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:297,194,0,0 0/0:.:491:491:0:0%:297,194,0,0 -Example1_ref 14567 . C A . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=6.5674E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:477:3:0.62%:299,178,0,3 0/0:.:480:477:3:0.62%:299,178,0,3 -Example1_ref 14568 . C . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:295,190,0,0 0/0:.:485:485:0:0%:295,190,0,0 -Example1_ref 14569 . T . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:299,197,0,0 0/0:.:496:496:0:0%:299,197,0,0 -Example1_ref 14570 . A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:299,194,0,0 0/0:.:493:493:0:0%:299,194,0,0 -Example1_ref 14571 . G . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:0:0%:297,197,0,0 0/0:.:495:494:0:0%:297,197,0,0 -Example1_ref 14572 . T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:302,197,0,0 0/0:.:499:499:0:0%:302,197,0,0 -Example1_ref 14573 . G T . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:298,193,1,0 0/0:.:492:491:1:0.2%:298,193,1,0 -Example1_ref 14574 . A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:290,197,0,0 0/0:.:487:487:0:0%:290,197,0,0 -Example1_ref 14575 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:294,200,0,0 0/0:.:494:494:0:0%:294,200,0,0 -Example1_ref 14576 . G . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:290,197,0,0 0/0:.:487:487:0:0%:290,197,0,0 -Example1_ref 14577 . T . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:299,194,0,0 0/0:.:493:493:0:0%:299,194,0,0 -Example1_ref 14578 . T . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:300,200,0,0 0/0:.:500:500:0:0%:300,200,0,0 -Example1_ref 14579 . G . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:294,195,0,0 0/0:.:489:489:0:0%:294,195,0,0 -Example1_ref 14580 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:295,200,0,0 0/0:.:495:495:0:0%:295,200,0,0 -Example1_ref 14581 . T . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:293,193,0,0 0/0:.:486:486:0:0%:293,193,0,0 -Example1_ref 14582 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:290,200,0,0 0/0:.:490:490:0:0%:290,200,0,0 -Example1_ref 14583 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:296,199,0,0 0/0:.:495:495:0:0%:296,199,0,0 -Example1_ref 14584 . A T . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:1:0.2%:294,202,1,0 0/0:.:497:496:1:0.2%:294,202,1,0 -Example1_ref 14585 . T . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:293,194,0,0 0/0:.:487:487:0:0%:293,194,0,0 -Example1_ref 14586 . C . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:291,188,0,0 0/0:.:479:479:0:0%:291,188,0,0 -Example1_ref 14587 . A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:288,198,0,0 0/0:.:486:486:0:0%:288,198,0,0 -Example1_ref 14588 . A . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:290,200,0,0 0/0:.:490:490:0:0%:290,200,0,0 -Example1_ref 14589 . A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:287,200,0,0 0/0:.:487:487:0:0%:287,200,0,0 -Example1_ref 14590 . A . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:288,201,0,0 0/0:.:489:489:0:0%:288,201,0,0 -Example1_ref 14591 . C . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:294,194,0,0 0/0:.:488:488:0:0%:294,194,0,0 -Example1_ref 14592 . T A . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:1:0.2%:295,199,0,1 0/0:.:495:494:1:0.2%:295,199,0,1 -Example1_ref 14593 . T . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:294,198,0,0 0/0:.:492:492:0:0%:294,198,0,0 -Example1_ref 14594 . A . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:295,200,0,0 0/0:.:495:495:0:0%:295,200,0,0 -Example1_ref 14595 . A . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:288,201,0,0 0/0:.:489:489:0:0%:288,201,0,0 -Example1_ref 14596 . G . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:292,199,0,0 0/0:.:491:491:0:0%:292,199,0,0 -Example1_ref 14597 . A . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:285,199,0,0 0/0:.:484:484:0:0%:285,199,0,0 -Example1_ref 14598 . G . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:290,206,0,0 0/0:.:496:496:0:0%:290,206,0,0 -Example1_ref 14599 . ATTAT A . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:509:1:0.2%:296,213,0,1 0/0:.:510:509:1:0.2%:296,213,0,1 -Example1_ref 14600 . T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:301,200,0,0 0/0:.:501:501:0:0%:301,200,0,0 -Example1_ref 14601 . T . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:298,206,0,0 0/0:.:504:504:0:0%:298,206,0,0 -Example1_ref 14602 . A . PASS DP=1024;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:301,211,0,0 0/0:.:512:512:0:0%:301,211,0,0 -Example1_ref 14603 . TC T . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:493:1:0.2%:296,197,1,0 0/0:.:494:493:1:0.2%:296,197,1,0 -Example1_ref 14604 . C . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:0:0%:293,204,0,0 0/0:.:498:497:0:0%:293,204,0,0 -Example1_ref 14605 . A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:296,210,0,0 0/0:.:506:506:0:0%:296,210,0,0 -Example1_ref 14606 . C A . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:494:2:0.4%:294,200,0,2 0/0:.:496:494:2:0.4%:294,200,0,2 -Example1_ref 14607 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:298,192,0,0 0/0:.:490:490:0:0%:298,192,0,0 -Example1_ref 14608 . T . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:298,199,0,0 0/0:.:497:497:0:0%:298,199,0,0 -Example1_ref 14609 . T . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:296,206,0,0 0/0:.:502:502:0:0%:296,206,0,0 -Example1_ref 14610 . T . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:296,210,0,0 0/0:.:506:506:0:0%:296,210,0,0 -Example1_ref 14611 . G A . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:1:0.2%:285,211,0,1 0/0:.:497:496:1:0.2%:285,211,0,1 -Example1_ref 14612 . G T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:1:0.2%:285,213,1,0 0/0:.:499:498:1:0.2%:285,213,1,0 -Example1_ref 14613 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:286,214,0,0 0/0:.:500:500:0:0%:286,214,0,0 -Example1_ref 14614 . A . PASS DP=1024;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:292,220,0,0 0/0:.:512:512:0:0%:292,220,0,0 -Example1_ref 14615 . G T . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=6.8788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:498:2:0.4%:286,212,2,0 0/0:.:500:498:2:0.4%:286,212,2,0 -Example1_ref 14616 . A T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:1:0.2%:281,217,0,1 0/0:.:499:498:1:0.2%:281,217,0,1 -Example1_ref 14617 . A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:289,217,0,0 0/0:.:506:506:0:0%:289,217,0,0 -Example1_ref 14618 . A . PASS DP=1014;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:288,219,0,0 0/0:.:507:507:0:0%:288,219,0,0 -Example1_ref 14619 . A . PASS DP=1030;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:515:515:0:0%:287,228,0,0 0/0:.:515:515:0:0%:287,228,0,0 -Example1_ref 14620 . T . PASS DP=1034;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:291,226,0,0 0/0:.:517:517:0:0%:291,226,0,0 -Example1_ref 14621 . A . PASS DP=1026;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:513:0:0%:286,227,0,0 0/0:.:513:513:0:0%:286,227,0,0 -Example1_ref 14622 . A T . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:513:1:0.19%:284,229,1,0 0/0:.:514:513:1:0.19%:284,229,1,0 -Example1_ref 14623 . T . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:294,220,0,0 0/0:.:514:514:0:0%:294,220,0,0 -Example1_ref 14624 . C . PASS DP=1032;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:289,227,0,0 0/0:.:516:516:0:0%:289,227,0,0 -Example1_ref 14625 . T . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:289,230,0,0 0/0:.:519:519:0:0%:289,230,0,0 -Example1_ref 14626 . A . PASS DP=1060;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:530:530:0:0%:298,232,0,0 0/0:.:530:530:0:0%:298,232,0,0 -Example1_ref 14627 . T . PASS DP=1050;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:297,228,0,0 0/0:.:525:525:0:0%:297,228,0,0 -Example1_ref 14628 . T A . PASS DP=1070;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:535:533:1:0.19%:298,235,1,0 0/0:.:535:533:1:0.19%:298,235,1,0 -Example1_ref 14629 . A . PASS DP=1060;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:530:530:0:0%:293,237,0,0 0/0:.:530:530:0:0%:293,237,0,0 -Example1_ref 14630 . A . PASS DP=1040;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:520:0:0%:285,235,0,0 0/0:.:520:520:0:0%:285,235,0,0 -Example1_ref 14631 . A . PASS DP=1040;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:520:0:0%:285,235,0,0 0/0:.:520:520:0:0%:285,235,0,0 -Example1_ref 14632 . A . PASS DP=1028;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:280,234,0,0 0/0:.:514:514:0:0%:280,234,0,0 -Example1_ref 14633 . T . PASS DP=1040;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:520:0:0%:287,233,0,0 0/0:.:520:520:0:0%:287,233,0,0 -Example1_ref 14634 . G . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:510:0:0%:278,232,0,0 0/0:.:510:510:0:0%:278,232,0,0 -Example1_ref 14635 . G . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:0:0%:271,229,0,0 0/0:.:501:500:0:0%:271,229,0,0 -Example1_ref 14636 . A T . PASS DP=1018;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:508:1:0.2%:279,229,1,0 0/0:.:509:508:1:0.2%:279,229,1,0 -Example1_ref 14637 . T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:283,218,0,0 0/0:.:501:501:0:0%:283,218,0,0 -Example1_ref 14638 . C G . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:1:0.2%:280,223,0,1 0/0:.:504:503:1:0.2%:280,223,0,1 -Example1_ref 14639 . A . PASS DP=1024;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:281,231,0,0 0/0:.:512:512:0:0%:281,231,0,0 -Example1_ref 14640 . T A . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:277,223,1,0 0/0:.:501:500:1:0.2%:277,223,1,0 -Example1_ref 14641 . T . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:275,225,0,0 0/0:.:500:500:0:0%:275,225,0,0 -Example1_ref 14642 . T . PASS DP=1014;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:276,231,0,0 0/0:.:507:507:0:0%:276,231,0,0 -Example1_ref 14643 . T . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:275,227,0,0 0/0:.:502:502:0:0%:275,227,0,0 -Example1_ref 14644 . A . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:274,230,0,0 0/0:.:504:504:0:0%:274,230,0,0 -Example1_ref 14645 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:274,221,0,0 0/0:.:495:495:0:0%:274,221,0,0 -Example1_ref 14646 . C . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:0:0%:270,224,0,0 0/0:.:495:494:0:0%:270,224,0,0 -Example1_ref 14647 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:266,228,0,0 0/0:.:494:494:0:0%:266,228,0,0 -Example1_ref 14648 . A . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:252,227,0,0 0/0:.:479:479:0:0%:252,227,0,0 -Example1_ref 14649 . A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:255,230,0,0 0/0:.:485:485:0:0%:255,230,0,0 -Example1_ref 14650 . G . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:256,229,0,0 0/0:.:485:485:0:0%:256,229,0,0 -Example1_ref 14651 . A . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:241,231,0,0 0/0:.:472:472:0:0%:241,231,0,0 -Example1_ref 14652 . A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:253,234,0,0 0/0:.:487:487:0:0%:253,234,0,0 -Example1_ref 14653 . G . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:244,234,0,0 0/0:.:478:478:0:0%:244,234,0,0 -Example1_ref 14654 . A . PASS DP=948;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:474:0:0%:245,229,0,0 0/0:.:474:474:0:0%:245,229,0,0 -Example1_ref 14655 . G . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:244,231,0,0 0/0:.:475:475:0:0%:244,231,0,0 -Example1_ref 14656 . G A . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:1:0.21%:241,231,1,0 0/0:.:473:472:1:0.21%:241,231,1,0 -Example1_ref 14657 . A . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:248,232,0,0 0/0:.:480:480:0:0%:248,232,0,0 -Example1_ref 14658 . A T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:250,234,1,0 0/0:.:485:484:1:0.21%:250,234,1,0 -Example1_ref 14659 . T . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:249,231,0,0 0/0:.:480:480:0:0%:249,231,0,0 -Example1_ref 14660 . A . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:251,231,0,0 0/0:.:482:482:0:0%:251,231,0,0 -Example1_ref 14661 . A . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:251,234,0,0 0/0:.:485:485:0:0%:251,234,0,0 -Example1_ref 14662 . T . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:247,228,0,0 0/0:.:475:475:0:0%:247,228,0,0 -Example1_ref 14663 . G GCTGTCTCTT . PASS DP=938;SS=0;SSC=0;GPV=1E0;SPV=6.879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:467:2:0.43%:239,228,2,0 0/0:.:469:467:2:0.43%:239,228,2,0 -Example1_ref 14664 . A . PASS DP=934;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:466:0:0%:242,224,0,0 0/0:.:467:466:0:0%:242,224,0,0 -Example1_ref 14665 . A . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:241,222,0,0 0/0:.:463:463:0:0%:241,222,0,0 -Example1_ref 14666 . T . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:239,219,0,0 0/0:.:458:458:0:0%:239,219,0,0 -Example1_ref 14667 . G C . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:447:1:0.22%:229,218,1,0 0/0:.:449:447:1:0.22%:229,218,1,0 -Example1_ref 14668 . G T . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:222,221,1,0 0/0:.:444:443:1:0.23%:222,221,1,0 -Example1_ref 14669 . T . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:232,219,0,0 0/0:.:451:451:0:0%:232,219,0,0 -Example1_ref 14670 . T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:234,219,0,0 0/0:.:453:453:0:0%:234,219,0,0 -Example1_ref 14671 . A . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:234,217,0,0 0/0:.:451:451:0:0%:234,217,0,0 -Example1_ref 14672 . C . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:230,211,0,0 0/0:.:441:441:0:0%:230,211,0,0 -Example1_ref 14673 . A . PASS DP=898;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:233,216,0,0 0/0:.:449:449:0:0%:233,216,0,0 -Example1_ref 14674 . T TG . PASS DP=826;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:412:1:0.24%:206,206,1,0 0/0:.:413:412:1:0.24%:206,206,1,0 -Example1_ref 14675 . CA C . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:407:1:0.25%:204,203,1,0 0/0:.:408:407:1:0.25%:204,203,1,0 -Example1_ref 14676 . A ACTGTCGC . PASS DP=812;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:405:1:0.25%:204,201,1,0 0/0:.:406:405:1:0.25%:204,201,1,0 -Example1_ref 14677 . T . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:202,200,0,0 0/0:.:402:402:0:0%:202,200,0,0 -Example1_ref 14678 . G . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:200,196,0,0 0/0:.:396:396:0:0%:200,196,0,0 -Example1_ref 14679 . A . PASS DP=808;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:204,200,0,0 0/0:.:404:404:0:0%:204,200,0,0 -Example1_ref 14680 . A . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:202,200,0,0 0/0:.:402:402:0:0%:202,200,0,0 -Example1_ref 14681 . A . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:203,202,0,0 0/0:.:405:405:0:0%:203,202,0,0 -Example1_ref 14682 . T A . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:408:1:0.24%:203,205,0,1 0/0:.:410:408:1:0.24%:203,205,0,1 -Example1_ref 14683 . C . PASS DP=818;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:409:0:0%:199,210,0,0 0/0:.:409:409:0:0%:199,210,0,0 -Example1_ref 14684 . A G . PASS DP=820;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:409:1:0.24%:199,210,0,1 0/0:.:410:409:1:0.24%:199,210,0,1 -Example1_ref 14685 . A . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:197,214,0,0 0/0:.:411:411:0:0%:197,214,0,0 -Example1_ref 14686 . G A . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:1:0.24%:199,215,0,1 0/0:.:415:414:1:0.24%:199,215,0,1 -Example1_ref 14687 . G . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:191,229,0,0 0/0:.:420:420:0:0%:191,229,0,0 -Example1_ref 14688 . A . PASS DP=846;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:194,229,0,0 0/0:.:423:423:0:0%:194,229,0,0 -Example1_ref 14689 . AG A . PASS DP=838;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:193,225,0,1 0/0:.:419:418:1:0.24%:193,225,0,1 -Example1_ref 14690 . G . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:196,222,0,0 0/0:.:418:418:0:0%:196,222,0,0 -Example1_ref 14691 . G T . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=6.8795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:412:2:0.48%:194,218,2,0 0/0:.:414:412:2:0.48%:194,218,2,0 -Example1_ref 14692 . G T . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:399:1:0.25%:183,216,0,1 0/0:.:400:399:1:0.25%:183,216,0,1 -Example1_ref 14693 . G . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:181,227,0,0 0/0:.:408:408:0:0%:181,227,0,0 -Example1_ref 14694 . A . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:190,228,0,0 0/0:.:418:418:0:0%:190,228,0,0 -Example1_ref 14695 . A C . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:414:1:0.24%:187,227,0,1 0/0:.:416:414:1:0.24%:187,227,0,1 -Example1_ref 14696 . A . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:417:0:0%:189,228,0,0 0/0:.:418:417:0:0%:189,228,0,0 -Example1_ref 14697 . G T . PASS DP=824;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:411:1:0.24%:190,221,1,0 0/0:.:412:411:1:0.24%:190,221,1,0 -Example1_ref 14698 . A . PASS DP=848;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:423:0:0%:201,222,0,0 0/0:.:424:423:0:0%:201,222,0,0 -Example1_ref 14699 . G . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:202,226,0,0 0/0:.:428:428:0:0%:202,226,0,0 -Example1_ref 14700 . A ACAG . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:441:1:0.23%:211,230,0,1 0/0:.:443:441:1:0.23%:211,230,0,1 -Example1_ref 14701 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:212,228,0,0 0/0:.:440:440:0:0%:212,228,0,0 -Example1_ref 14702 . T . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:217,225,0,0 0/0:.:442:442:0:0%:217,225,0,0 -Example1_ref 14703 . A . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:216,231,0,0 0/0:.:447:447:0:0%:216,231,0,0 -Example1_ref 14704 . T . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:217,228,0,0 0/0:.:445:445:0:0%:217,228,0,0 -Example1_ref 14705 . G . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:220,225,0,0 0/0:.:445:445:0:0%:220,225,0,0 -Example1_ref 14706 . G T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=6.5679E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:436:3:0.68%:211,225,3,0 0/0:.:440:436:3:0.68%:211,225,3,0 -Example1_ref 14707 . A . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:436:0:0%:215,221,0,0 0/0:.:438:436:0:0%:215,221,0,0 -Example1_ref 14708 . G . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:228,217,0,0 0/0:.:445:445:0:0%:228,217,0,0 -Example1_ref 14709 . T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:231,222,0,0 0/0:.:453:453:0:0%:231,222,0,0 -Example1_ref 14710 . T . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:236,223,0,0 0/0:.:459:459:0:0%:236,223,0,0 -Example1_ref 14711 . A . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:233,224,0,0 0/0:.:457:457:0:0%:233,224,0,0 -Example1_ref 14712 . T TAA . PASS DP=892;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:1:0.22%:223,222,0,1 0/0:.:446:445:1:0.22%:223,222,0,1 -Example1_ref 14713 . G T . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:436:1:0.23%:213,223,0,1 0/0:.:437:436:1:0.23%:213,223,0,1 -Example1_ref 14714 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:219,224,0,0 0/0:.:443:443:0:0%:219,224,0,0 -Example1_ref 14715 . G . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:215,222,0,0 0/0:.:437:437:0:0%:215,222,0,0 -Example1_ref 14716 . A . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:225,222,0,0 0/0:.:447:447:0:0%:225,222,0,0 -Example1_ref 14717 . C A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=6.8793E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:434:2:0.46%:229,205,0,2 0/0:.:436:434:2:0.46%:229,205,0,2 -Example1_ref 14718 . C A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:1:0.23%:226,213,0,1 0/0:.:440:439:1:0.23%:226,213,0,1 -Example1_ref 14719 . A . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:249,212,0,0 0/0:.:461:461:0:0%:249,212,0,0 -Example1_ref 14720 . T . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:251,211,0,0 0/0:.:462:462:0:0%:251,211,0,0 -Example1_ref 14721 . A . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:258,217,0,0 0/0:.:475:475:0:0%:258,217,0,0 -Example1_ref 14722 . T . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:265,217,0,0 0/0:.:482:482:0:0%:265,217,0,0 -Example1_ref 14723 . C . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:274,210,0,0 0/0:.:484:484:0:0%:274,210,0,0 -Example1_ref 14724 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:281,213,0,0 0/0:.:494:494:0:0%:281,213,0,0 -Example1_ref 14725 . T . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:279,213,0,0 0/0:.:492:492:0:0%:279,213,0,0 -Example1_ref 14726 . A C . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:477:2:0.42%:274,203,2,0 0/0:.:480:477:2:0.42%:274,203,2,0 -Example1_ref 14727 . T . PASS DP=1010;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:505:0:0%:277,228,0,0 0/0:.:505:505:0:0%:277,228,0,0 -Example1_ref 14728 . G . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:272,212,0,0 0/0:.:484:484:0:0%:272,212,0,0 -Example1_ref 14729 . G T . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=6.3729E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:480:4:0.83%:269,211,4,0 0/0:.:486:480:4:0.83%:269,211,4,0 -Example1_ref 14730 . CA C . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:478:1:0.21%:278,200,1,0 0/0:.:481:478:1:0.21%:278,200,1,0 -Example1_ref 14731 . A ATGTCT . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:275,209,1,0 0/0:.:485:484:1:0.21%:275,209,1,0 -Example1_ref 14732 . C A . PASS DP=948;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:472:1:0.21%:276,196,0,1 0/0:.:474:472:1:0.21%:276,196,0,1 -Example1_ref 14733 . T G . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:1:0.21%:279,207,0,1 0/0:.:487:486:1:0.21%:279,207,0,1 -Example1_ref 14734 . A . PASS DP=986;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:281,212,0,0 0/0:.:493:493:0:0%:281,212,0,0 -Example1_ref 14735 . C T . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:478:1:0.21%:282,196,0,1 0/0:.:479:478:1:0.21%:282,196,0,1 -Example1_ref 14736 . A AAGAGAC . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:282,206,0,1 0/0:.:490:488:1:0.2%:282,206,0,1 -Example1_ref 14737 . A C . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:483:2:0.41%:276,207,2,0 0/0:.:485:483:2:0.41%:276,207,2,0 -Example1_ref 14738 . A ATCCTGTC . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=6.8789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:477:2:0.42%:272,205,2,0 0/0:.:479:477:2:0.42%:272,205,2,0 -Example1_ref 14739 . T . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:275,202,0,0 0/0:.:477:477:0:0%:275,202,0,0 -Example1_ref 14740 . C A . PASS DP=932;SS=0;SSC=0;GPV=1E0;SPV=6.879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:464:2:0.43%:265,199,1,1 0/0:.:466:464:2:0.43%:265,199,1,1 -Example1_ref 14741 . T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:261,192,0,0 0/0:.:453:453:0:0%:261,192,0,0 -Example1_ref 14742 . T . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:264,198,0,0 0/0:.:462:462:0:0%:264,198,0,0 -Example1_ref 14743 . C . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:250,193,0,0 0/0:.:443:443:0:0%:250,193,0,0 -Example1_ref 14744 . G . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:247,196,0,0 0/0:.:443:443:0:0%:247,196,0,0 -Example1_ref 14745 . G . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:243,201,0,0 0/0:.:444:444:0:0%:243,201,0,0 -Example1_ref 14746 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:240,202,0,0 0/0:.:442:442:0:0%:240,202,0,0 -Example1_ref 14747 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:242,198,0,0 0/0:.:440:440:0:0%:242,198,0,0 -Example1_ref 14748 . T . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:236,198,0,0 0/0:.:434:434:0:0%:236,198,0,0 -Example1_ref 14749 . T . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:234,198,0,0 0/0:.:432:432:0:0%:234,198,0,0 -Example1_ref 14750 . C A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:426:1:0.23%:233,193,0,1 0/0:.:429:426:1:0.23%:233,193,0,1 -Example1_ref 14751 . A . PASS DP=862;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:229,202,0,0 0/0:.:431:431:0:0%:229,202,0,0 -Example1_ref 14752 . A . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:228,204,0,0 0/0:.:432:432:0:0%:228,204,0,0 -Example1_ref 14753 . A . PASS DP=858;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:227,202,0,0 0/0:.:429:429:0:0%:227,202,0,0 -Example1_ref 14754 . T A . PASS DP=850;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:1:0.24%:233,191,0,1 0/0:.:425:424:1:0.24%:233,191,0,1 -Example1_ref 14755 . C . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:226,194,0,0 0/0:.:420:420:0:0%:226,194,0,0 -Example1_ref 14756 . A . PASS DP=854;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:230,197,0,0 0/0:.:427:427:0:0%:230,197,0,0 -Example1_ref 14757 . A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:236,200,0,0 0/0:.:436:436:0:0%:236,200,0,0 -Example1_ref 14758 . T . PASS DP=856;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:239,189,0,0 0/0:.:428:428:0:0%:239,189,0,0 -Example1_ref 14759 . T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:235,200,0,0 0/0:.:435:435:0:0%:235,200,0,0 -Example1_ref 14760 . T . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:233,200,0,0 0/0:.:433:433:0:0%:233,200,0,0 -Example1_ref 14761 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:236,204,0,0 0/0:.:440:440:0:0%:236,204,0,0 -Example1_ref 14762 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:231,202,0,0 0/0:.:433:433:0:0%:231,202,0,0 -Example1_ref 14763 . A . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:231,204,0,0 0/0:.:435:435:0:0%:231,204,0,0 -Example1_ref 14764 . T . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:235,197,0,0 0/0:.:432:432:0:0%:235,197,0,0 -Example1_ref 14765 . C T . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:239,203,1,0 0/0:.:443:442:1:0.23%:239,203,1,0 -Example1_ref 14766 . A . PASS DP=878;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:236,203,0,0 0/0:.:439:439:0:0%:236,203,0,0 -Example1_ref 14767 . T . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:239,198,0,0 0/0:.:437:437:0:0%:239,198,0,0 -Example1_ref 14768 . C . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:238,196,0,0 0/0:.:434:434:0:0%:238,196,0,0 -Example1_ref 14769 . T . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:238,204,0,0 0/0:.:442:442:0:0%:238,204,0,0 -Example1_ref 14770 . G A . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:436:1:0.23%:237,199,0,1 0/0:.:438:436:1:0.23%:237,199,0,1 -Example1_ref 14771 . G T . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:232,202,1,0 0/0:.:435:434:1:0.23%:232,202,1,0 -Example1_ref 14772 . C A . PASS DP=860;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:429:1:0.23%:232,197,0,1 0/0:.:430:429:1:0.23%:232,197,0,1 -Example1_ref 14773 . G T . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:236,204,1,0 0/0:.:441:440:1:0.23%:236,204,1,0 -Example1_ref 14774 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:237,205,0,0 0/0:.:442:442:0:0%:237,205,0,0 -Example1_ref 14775 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:240,202,0,0 0/0:.:442:442:0:0%:240,202,0,0 -Example1_ref 14776 . A . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:243,208,0,0 0/0:.:451:451:0:0%:243,208,0,0 -Example1_ref 14777 . G . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:238,207,0,0 0/0:.:445:445:0:0%:238,207,0,0 -Example1_ref 14778 . A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:239,204,0,0 0/0:.:443:443:0:0%:239,204,0,0 -Example1_ref 14779 . A . PASS DP=870;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:231,204,0,0 0/0:.:435:435:0:0%:231,204,0,0 -Example1_ref 14780 . T TATA . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:240,204,1,0 0/0:.:445:444:1:0.22%:240,204,1,0 -Example1_ref 14781 . T . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:239,201,0,0 0/0:.:440:440:0:0%:239,201,0,0 -Example1_ref 14782 . T C . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:431:1:0.23%:235,196,0,1 0/0:.:432:431:1:0.23%:235,196,0,1 -Example1_ref 14783 . T . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:241,204,0,0 0/0:.:445:445:0:0%:241,204,0,0 -Example1_ref 14784 . T C . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:236,204,0,1 0/0:.:441:440:1:0.23%:236,204,0,1 -Example1_ref 14785 . A . PASS DP=894;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:237,210,0,0 0/0:.:447:447:0:0%:237,210,0,0 -Example1_ref 14786 . T . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:236,208,0,0 0/0:.:444:444:0:0%:236,208,0,0 -Example1_ref 14787 . CA C . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:236,206,0,1 0/0:.:443:442:1:0.23%:236,206,0,1 -Example1_ref 14788 . A . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:233,207,0,0 0/0:.:440:440:0:0%:233,207,0,0 -Example1_ref 14789 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:233,209,0,0 0/0:.:442:442:0:0%:233,209,0,0 -Example1_ref 14790 . C . PASS DP=888;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:242,202,0,0 0/0:.:444:444:0:0%:242,202,0,0 -Example1_ref 14791 . T C . PASS DP=880;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:1:0.23%:241,198,1,0 0/0:.:440:439:1:0.23%:241,198,1,0 -Example1_ref 14792 . C . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:243,209,0,0 0/0:.:452:452:0:0%:243,209,0,0 -Example1_ref 14793 . C . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:243,214,0,0 0/0:.:457:457:0:0%:243,214,0,0 -Example1_ref 14794 . A . PASS DP=920;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:245,215,0,0 0/0:.:460:460:0:0%:245,215,0,0 -Example1_ref 14795 . G . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:244,215,0,0 0/0:.:459:459:0:0%:244,215,0,0 -Example1_ref 14796 . A . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:238,216,0,0 0/0:.:454:454:0:0%:238,216,0,0 -Example1_ref 14797 . T . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:248,210,0,0 0/0:.:458:458:0:0%:248,210,0,0 -Example1_ref 14798 . C . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:247,211,0,0 0/0:.:458:458:0:0%:247,211,0,0 -Example1_ref 14799 . T TAAGAGACAG . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:248,209,0,1 0/0:.:458:457:1:0.22%:248,209,0,1 -Example1_ref 14800 . G . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:459:0:0%:255,204,0,0 0/0:.:461:459:0:0%:255,204,0,0 -Example1_ref 14801 . A . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:262,213,0,0 0/0:.:475:475:0:0%:262,213,0,0 -Example1_ref 14802 . C . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:266,207,0,0 0/0:.:473:473:0:0%:266,207,0,0 -Example1_ref 14803 . T . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:265,211,0,0 0/0:.:476:476:0:0%:265,211,0,0 -Example1_ref 14804 . A . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:266,209,0,0 0/0:.:475:475:0:0%:266,209,0,0 -Example1_ref 14805 . A . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:269,214,0,0 0/0:.:483:483:0:0%:269,214,0,0 -Example1_ref 14806 . T . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:481:0:0%:272,209,0,0 0/0:.:481:481:0:0%:272,209,0,0 -Example1_ref 14807 . A . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:0:0%:267,215,0,0 0/0:.:483:482:0:0%:267,215,0,0 -Example1_ref 14808 . T . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:269,208,0,0 0/0:.:477:477:0:0%:269,208,0,0 -Example1_ref 14809 . C . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:274,206,0,0 0/0:.:480:480:0:0%:274,206,0,0 -Example1_ref 14810 . A ATGGG . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:480:1:0.21%:272,208,1,0 0/0:.:482:480:1:0.21%:272,208,1,0 -Example1_ref 14811 . A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:275,212,0,0 0/0:.:487:487:0:0%:275,212,0,0 -Example1_ref 14812 . C . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:483:0:0%:279,204,0,0 0/0:.:484:483:0:0%:279,204,0,0 -Example1_ref 14813 . A . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:273,207,0,0 0/0:.:480:480:0:0%:273,207,0,0 -Example1_ref 14814 . A G . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:279,208,1,0 0/0:.:488:487:1:0.2%:279,208,1,0 -Example1_ref 14815 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:281,203,0,0 0/0:.:484:484:0:0%:281,203,0,0 -Example1_ref 14816 . A . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:275,208,0,0 0/0:.:483:483:0:0%:275,208,0,0 -Example1_ref 14817 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:279,211,0,0 0/0:.:490:490:0:0%:279,211,0,0 -Example1_ref 14818 . A . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:481:0:0%:276,205,0,0 0/0:.:481:481:0:0%:276,205,0,0 -Example1_ref 14819 . A T . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:1:0.21%:278,204,1,0 0/0:.:483:482:1:0.21%:278,204,1,0 -Example1_ref 14820 . T . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:282,196,0,0 0/0:.:478:478:0:0%:282,196,0,0 -Example1_ref 14821 . T . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:280,196,0,0 0/0:.:476:476:0:0%:280,196,0,0 -Example1_ref 14822 . C . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:283,200,0,0 0/0:.:483:483:0:0%:283,200,0,0 -Example1_ref 14823 . A . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:282,197,0,0 0/0:.:479:479:0:0%:282,197,0,0 -Example1_ref 14824 . A . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:280,199,0,0 0/0:.:479:479:0:0%:280,199,0,0 -Example1_ref 14825 . A . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:274,203,0,0 0/0:.:477:477:0:0%:274,203,0,0 -Example1_ref 14826 . G A . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:281,204,0,1 0/0:.:486:485:1:0.21%:281,204,0,1 -Example1_ref 14827 . T . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:285,198,0,0 0/0:.:483:483:0:0%:285,198,0,0 -Example1_ref 14828 . T . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:279,200,0,0 0/0:.:479:479:0:0%:279,200,0,0 -Example1_ref 14829 . T . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:278,195,0,0 0/0:.:473:473:0:0%:278,195,0,0 -Example1_ref 14830 . T . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:285,202,0,0 0/0:.:487:487:0:0%:285,202,0,0 -Example1_ref 14831 . C . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:286,204,0,0 0/0:.:490:490:0:0%:286,204,0,0 -Example1_ref 14832 . A T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:282,207,1,0 0/0:.:490:489:1:0.2%:282,207,1,0 -Example1_ref 14833 . G C . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:477:1:0.21%:272,205,0,1 0/0:.:479:477:1:0.21%:272,205,0,1 -Example1_ref 14834 . A . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:277,210,0,0 0/0:.:487:487:0:0%:277,210,0,0 -Example1_ref 14835 . G C . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:481:1:0.21%:275,206,1,0 0/0:.:483:481:1:0.21%:275,206,1,0 -Example1_ref 14836 . A . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:278,205,0,0 0/0:.:483:483:0:0%:278,205,0,0 -Example1_ref 14837 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:285,209,0,0 0/0:.:494:494:0:0%:285,209,0,0 -Example1_ref 14838 . C . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:289,207,0,0 0/0:.:496:496:0:0%:289,207,0,0 -Example1_ref 14839 . A . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:292,202,0,0 0/0:.:494:494:0:0%:292,202,0,0 -Example1_ref 14840 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:0:0%:295,206,0,0 0/0:.:502:501:0:0%:295,206,0,0 -Example1_ref 14841 . T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:297,202,0,0 0/0:.:499:499:0:0%:297,202,0,0 -Example1_ref 14842 . C A . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:1:0.2%:295,199,0,1 0/0:.:495:494:1:0.2%:295,199,0,1 -Example1_ref 14843 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:0:0%:294,207,0,0 0/0:.:502:501:0:0%:294,207,0,0 -Example1_ref 14844 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:290,210,0,0 0/0:.:500:500:0:0%:290,210,0,0 -Example1_ref 14845 . G . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:293,207,0,0 0/0:.:500:500:0:0%:293,207,0,0 -Example1_ref 14846 . G T . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:284,206,1,0 0/0:.:491:490:1:0.2%:284,206,1,0 -Example1_ref 14847 . A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:292,206,0,0 0/0:.:498:498:0:0%:292,206,0,0 -Example1_ref 14848 . T A . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:1:0.2%:295,200,0,1 0/0:.:496:495:1:0.2%:295,200,0,1 -Example1_ref 14849 . G . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:288,204,0,0 0/0:.:492:492:0:0%:288,204,0,0 -Example1_ref 14850 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:291,204,0,0 0/0:.:495:495:0:0%:291,204,0,0 -Example1_ref 14851 . T . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:288,202,0,0 0/0:.:490:490:0:0%:288,202,0,0 -Example1_ref 14852 . T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:293,202,0,0 0/0:.:495:495:0:0%:293,202,0,0 -Example1_ref 14853 . T C . PASS DP=976;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:287,200,1,0 0/0:.:488:487:1:0.2%:287,200,1,0 -Example1_ref 14854 . G . PASS DP=982;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:286,205,0,0 0/0:.:491:491:0:0%:286,205,0,0 -Example1_ref 14855 . T . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:296,204,0,0 0/0:.:500:500:0:0%:296,204,0,0 -Example1_ref 14856 . T . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:0:0%:295,200,0,0 0/0:.:496:495:0:0%:295,200,0,0 -Example1_ref 14857 . C . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:290,202,0,0 0/0:.:492:492:0:0%:290,202,0,0 -Example1_ref 14858 . G . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:291,203,0,0 0/0:.:494:494:0:0%:291,203,0,0 -Example1_ref 14859 . A . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:294,207,0,0 0/0:.:501:501:0:0%:294,207,0,0 -Example1_ref 14860 . A G . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:486:1:0.21%:287,199,1,0 0/0:.:490:486:1:0.21%:287,199,1,0 -Example1_ref 14861 . T TG . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=7.5026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:290,199,1,0 0/0:.:490:489:1:0.2%:290,199,1,0 -Example1_ref 14862 . G . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:290,205,0,0 0/0:.:495:495:0:0%:290,205,0,0 -Example1_ref 14863 . G . PASS DP=1034;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:306,211,0,0 0/0:.:517:517:0:0%:306,211,0,0 -Example1_ref 14864 . A . PASS DP=1048;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:524:524:0:0%:308,216,0,0 0/0:.:524:524:0:0%:308,216,0,0 -Example1_ref 14865 . T . PASS DP=1050;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:312,213,0,0 0/0:.:525:525:0:0%:312,213,0,0 -Example1_ref 14866 . T . PASS DP=1066;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:533:0:0%:315,218,0,0 0/0:.:533:533:0:0%:315,218,0,0 -Example1_ref 14867 . A . PASS DP=1096;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:548:548:0:0%:334,214,0,0 0/0:.:548:548:0:0%:334,214,0,0 -Example1_ref 14868 . A . PASS DP=1158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:579:579:0:0%:347,232,0,0 0/0:.:579:579:0:0%:347,232,0,0 -Example1_ref 14869 . T C . PASS DP=1166;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:583:582:1:0.17%:348,234,1,0 0/0:.:583:582:1:0.17%:348,234,1,0 -Example1_ref 14870 . A G . PASS DP=1180;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:590:588:1:0.17%:346,242,0,1 0/0:.:590:588:1:0.17%:346,242,0,1 -Example1_ref 14871 . T . PASS DP=1176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:588:588:0:0%:351,237,0,0 0/0:.:588:588:0:0%:351,237,0,0 -Example1_ref 14872 . A . PASS DP=1174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:587:587:0:0%:351,236,0,0 0/0:.:587:587:0:0%:351,236,0,0 -Example1_ref 14873 . A G . PASS DP=1180;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:590:589:1:0.17%:353,236,0,1 0/0:.:590:589:1:0.17%:353,236,0,1 -Example1_ref 14874 . C A . PASS DP=1164;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:582:581:1:0.17%:354,227,0,1 0/0:.:582:581:1:0.17%:354,227,0,1 -Example1_ref 14875 . C A . PASS DP=1152;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:576:575:1:0.17%:340,235,0,1 0/0:.:576:575:1:0.17%:340,235,0,1 -Example1_ref 14876 . C A . PASS DP=1140;SS=0;SSC=0;GPV=1E0;SPV=6.5666E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:570:565:3:0.53%:337,228,3,0 0/0:.:570:565:3:0.53%:337,228,3,0 -Example1_ref 14877 . A . PASS DP=1124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:562:561:0:0%:344,217,0,0 0/0:.:562:561:0:0%:344,217,0,0 -Example1_ref 14878 . T . PASS DP=1128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:564:564:0:0%:344,220,0,0 0/0:.:564:564:0:0%:344,220,0,0 -Example1_ref 14879 . G . PASS DP=1114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:557:557:0:0%:335,222,0,0 0/0:.:557:557:0:0%:335,222,0,0 -Example1_ref 14880 . A ATGATTTAATT . PASS DP=1146;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:573:571:1:0.17%:340,231,1,0 0/0:.:573:571:1:0.17%:340,231,1,0 -Example1_ref 14881 . T . PASS DP=1154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:577:577:0:0%:343,234,0,0 0/0:.:577:577:0:0%:343,234,0,0 -Example1_ref 14882 . G GTGT . PASS DP=1132;SS=0;SSC=0;GPV=1E0;SPV=6.8783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:566:563:2:0.35%:334,229,0,2 0/0:.:566:563:2:0.35%:334,229,0,2 -Example1_ref 14883 . A ATT . PASS DP=1132;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:566:564:1:0.18%:334,230,1,0 0/0:.:566:564:1:0.18%:334,230,1,0 -Example1_ref 14884 . T . PASS DP=1146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:573:573:0:0%:342,231,0,0 0/0:.:573:573:0:0%:342,231,0,0 -Example1_ref 14885 . A . PASS DP=1136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:568:567:0:0%:336,231,0,0 0/0:.:568:567:0:0%:336,231,0,0 -Example1_ref 14886 . A T . PASS DP=1144;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:572:571:1:0.17%:335,236,0,1 0/0:.:572:571:1:0.17%:335,236,0,1 -Example1_ref 14887 . G T . PASS DP=1102;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:551:549:1:0.18%:316,233,1,0 0/0:.:551:549:1:0.18%:316,233,1,0 -Example1_ref 14888 . A . PASS DP=1100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:550:550:0:0%:323,227,0,0 0/0:.:550:550:0:0%:323,227,0,0 -Example1_ref 14889 . G T . PASS DP=1088;SS=0;SSC=0;GPV=1E0;SPV=6.8785E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:544:542:2:0.37%:312,230,2,0 0/0:.:544:542:2:0.37%:312,230,2,0 -Example1_ref 14890 . A . PASS DP=1098;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:549:549:0:0%:321,228,0,0 0/0:.:549:549:0:0%:321,228,0,0 -Example1_ref 14891 . C . PASS DP=1102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:551:551:0:0%:325,226,0,0 0/0:.:551:551:0:0%:325,226,0,0 -Example1_ref 14892 . A . PASS DP=1104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:552:550:0:0%:322,228,0,0 0/0:.:552:550:0:0%:322,228,0,0 -Example1_ref 14893 . T G . PASS DP=1120;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:560:557:1:0.18%:329,228,0,1 0/0:.:560:557:1:0.18%:329,228,0,1 -Example1_ref 14894 . A . PASS DP=1124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:562:560:0:0%:330,230,0,0 0/0:.:562:560:0:0%:330,230,0,0 -Example1_ref 14895 . A . PASS DP=1116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:558:556:0:0%:328,228,0,0 0/0:.:558:556:0:0%:328,228,0,0 -Example1_ref 14896 . A . PASS DP=1120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:560:558:0:0%:320,238,0,0 0/0:.:560:558:0:0%:320,238,0,0 -Example1_ref 14897 . T C . PASS DP=1114;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:557:554:1:0.18%:324,230,1,0 0/0:.:557:554:1:0.18%:324,230,1,0 -Example1_ref 14898 . T C . PASS DP=1082;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:541:538:1:0.19%:308,230,1,0 0/0:.:541:538:1:0.19%:308,230,1,0 -Example1_ref 14899 . A . PASS DP=1096;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:548:546:0:0%:314,232,0,0 0/0:.:548:546:0:0%:314,232,0,0 -Example1_ref 14900 . G T . PASS DP=1072;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:536:532:1:0.19%:303,229,0,1 0/0:.:536:532:1:0.19%:303,229,0,1 -Example1_ref 14901 . G C . PASS DP=1034;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:513:1:0.19%:282,231,1,0 0/0:.:517:513:1:0.19%:282,231,1,0 -Example1_ref 14902 . C A . PASS DP=1068;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:531:1:0.19%:300,231,1,0 0/0:.:534:531:1:0.19%:300,231,1,0 -Example1_ref 14903 . G A . PASS DP=1036;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:514:1:0.19%:290,224,0,1 0/0:.:518:514:1:0.19%:290,224,0,1 -Example1_ref 14904 . G . PASS DP=1050;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:523:0:0%:296,227,0,0 0/0:.:525:523:0:0%:296,227,0,0 -Example1_ref 14905 . G T . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:520:1:0.19%:288,232,1,0 0/0:.:523:520:1:0.19%:288,232,1,0 -Example1_ref 14906 . A . PASS DP=1060;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:530:528:0:0%:289,239,0,0 0/0:.:530:528:0:0%:289,239,0,0 -Example1_ref 14907 . G . PASS DP=1086;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:543:543:0:0%:289,254,0,0 0/0:.:543:543:0:0%:289,254,0,0 -Example1_ref 14908 . A . PASS DP=1180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:590:590:0:0%:342,248,0,0 0/0:.:590:590:0:0%:342,248,0,0 -Example1_ref 14909 . T C . PASS DP=1182;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:591:590:1:0.17%:331,259,0,1 0/0:.:591:590:1:0.17%:331,259,0,1 -Example1_ref 14910 . A . PASS DP=1186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:593:593:0:0%:330,263,0,0 0/0:.:593:593:0:0%:330,263,0,0 -Example1_ref 14911 . T C . PASS DP=1154;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:577:576:1:0.17%:314,262,1,0 0/0:.:577:576:1:0.17%:314,262,1,0 -Example1_ref 14912 . A . PASS DP=1164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:582:582:0:0%:320,262,0,0 0/0:.:582:582:0:0%:320,262,0,0 -Example1_ref 14913 . AT A . PASS DP=1202;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:601:600:1:0.17%:333,267,0,1 0/0:.:601:600:1:0.17%:333,267,0,1 -Example1_ref 14914 . T . PASS DP=1174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:587:586:0:0%:323,263,0,0 0/0:.:587:586:0:0%:323,263,0,0 -Example1_ref 14915 . A . PASS DP=1182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:591:591:0:0%:328,263,0,0 0/0:.:591:591:0:0%:328,263,0,0 -Example1_ref 14916 . T C . PASS DP=1170;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:585:583:1:0.17%:324,259,1,0 0/0:.:585:583:1:0.17%:324,259,1,0 -Example1_ref 14917 . A C . PASS DP=1096;SS=0;SSC=0;GPV=1E0;SPV=6.8784E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:548:546:2:0.36%:322,224,2,0 0/0:.:548:546:2:0.36%:322,224,2,0 -Example1_ref 14918 . T A . PASS DP=1092;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:546:543:1:0.18%:324,219,0,1 0/0:.:546:543:1:0.18%:324,219,0,1 -Example1_ref 14919 . T . PASS DP=1056;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:528:0:0%:315,213,0,0 0/0:.:528:528:0:0%:315,213,0,0 -Example1_ref 14920 . C . PASS DP=1050;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:314,211,0,0 0/0:.:525:525:0:0%:314,211,0,0 -Example1_ref 14921 . C A . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=6.8786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:520:2:0.38%:307,213,0,2 0/0:.:523:520:2:0.38%:307,213,0,2 -Example1_ref 14922 . C A . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:522:1:0.19%:302,220,0,1 0/0:.:523:522:1:0.19%:302,220,0,1 -Example1_ref 14923 . A . PASS DP=1068;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:534:0:0%:307,227,0,0 0/0:.:534:534:0:0%:307,227,0,0 -Example1_ref 14924 . C T . PASS DP=1056;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:527:1:0.19%:308,219,1,0 0/0:.:528:527:1:0.19%:308,219,1,0 -Example1_ref 14925 . T . PASS DP=1074;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:537:0:0%:311,226,0,0 0/0:.:537:537:0:0%:311,226,0,0 -Example1_ref 14926 . G . PASS DP=1062;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:531:0:0%:309,222,0,0 0/0:.:531:531:0:0%:309,222,0,0 -Example1_ref 14927 . A . PASS DP=1068;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:534:0:0%:306,228,0,0 0/0:.:534:534:0:0%:306,228,0,0 -Example1_ref 14928 . A . PASS DP=1072;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:536:536:0:0%:306,230,0,0 0/0:.:536:536:0:0%:306,230,0,0 -Example1_ref 14929 . A G . PASS DP=1076;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:538:537:1:0.19%:309,228,1,0 0/0:.:538:537:1:0.19%:309,228,1,0 -Example1_ref 14930 . A . PASS DP=1080;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:540:540:0:0%:310,230,0,0 0/0:.:540:540:0:0%:310,230,0,0 -Example1_ref 14931 . A . PASS DP=1084;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:542:542:0:0%:308,234,0,0 0/0:.:542:542:0:0%:308,234,0,0 -Example1_ref 14932 . T . PASS DP=1086;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:543:543:0:0%:313,230,0,0 0/0:.:543:543:0:0%:313,230,0,0 -Example1_ref 14933 . A . PASS DP=1088;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:544:544:0:0%:311,233,0,0 0/0:.:544:544:0:0%:311,233,0,0 -Example1_ref 14934 . A . PASS DP=1090;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:545:545:0:0%:311,234,0,0 0/0:.:545:545:0:0%:311,234,0,0 -Example1_ref 14935 . G . PASS DP=1078;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:539:539:0:0%:308,231,0,0 0/0:.:539:539:0:0%:308,231,0,0 -Example1_ref 14936 . G A . PASS DP=1056;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:527:1:0.19%:299,228,0,1 0/0:.:528:527:1:0.19%:299,228,0,1 -Example1_ref 14937 . GA G . PASS DP=1070;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:535:533:1:0.19%:299,234,0,1 0/0:.:535:533:1:0.19%:299,234,0,1 -Example1_ref 14938 . A . PASS DP=1074;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:537:0:0%:305,232,0,0 0/0:.:537:537:0:0%:305,232,0,0 -Example1_ref 14939 . A . PASS DP=1080;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:540:540:0:0%:306,234,0,0 0/0:.:540:540:0:0%:306,234,0,0 -Example1_ref 14940 . A . PASS DP=1114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:557:557:0:0%:321,236,0,0 0/0:.:557:557:0:0%:321,236,0,0 -Example1_ref 14941 . G . PASS DP=1132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:566:566:0:0%:326,240,0,0 0/0:.:566:566:0:0%:326,240,0,0 -Example1_ref 14942 . T C . PASS DP=1154;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:577:576:1:0.17%:332,244,1,0 0/0:.:577:576:1:0.17%:332,244,1,0 -Example1_ref 14943 . T C . PASS DP=1146;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:573:572:1:0.17%:332,240,1,0 0/0:.:573:572:1:0.17%:332,240,1,0 -Example1_ref 14944 . A . PASS DP=1142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:571:571:0:0%:333,238,0,0 0/0:.:571:571:0:0%:333,238,0,0 -Example1_ref 14945 . A . PASS DP=1138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:569:568:0:0%:326,242,0,0 0/0:.:569:568:0:0%:326,242,0,0 -Example1_ref 14946 . G . PASS DP=1118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:559:558:0:0%:316,242,0,0 0/0:.:559:558:0:0%:316,242,0,0 -Example1_ref 14947 . A G . PASS DP=1130;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:565:564:1:0.18%:319,245,0,1 0/0:.:565:564:1:0.18%:319,245,0,1 -Example1_ref 14948 . C T . PASS DP=1140;SS=0;SSC=0;GPV=1E0;SPV=7.5022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:570:569:1:0.18%:323,246,1,0 0/0:.:570:569:1:0.18%:323,246,1,0 -Example1_ref 14949 . T . PASS DP=1156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:578:578:0:0%:328,250,0,0 0/0:.:578:578:0:0%:328,250,0,0 -Example1_ref 14950 . G T . PASS DP=1188;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:594:593:1:0.17%:337,256,0,1 0/0:.:594:593:1:0.17%:337,256,0,1 -Example1_ref 14951 . C A . PASS DP=1216;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:608:607:1:0.16%:341,266,0,1 0/0:.:608:607:1:0.16%:341,266,0,1 -Example1_ref 14952 . T . PASS DP=1242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:621:621:0:0%:341,280,0,0 0/0:.:621:621:0:0%:341,280,0,0 -Example1_ref 14953 . A ATCTG . PASS DP=1250;SS=0;SSC=0;GPV=1E0;SPV=7.502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:625:624:1:0.16%:344,280,1,0 0/0:.:625:624:1:0.16%:344,280,1,0 -Example1_ref 14954 . T . PASS DP=1226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:613:613:0:0%:341,272,0,0 0/0:.:613:613:0:0%:341,272,0,0 -Example1_ref 14955 . C T . PASS DP=1226;SS=0;SSC=0;GPV=1E0;SPV=6.8781E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:613:611:2:0.33%:336,275,1,1 0/0:.:613:611:2:0.33%:336,275,1,1 -Example1_ref 14956 . G . PASS DP=1242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:621:621:0:0%:340,281,0,0 0/0:.:621:621:0:0%:340,281,0,0 -Example1_ref 14957 . A G . PASS DP=1266;SS=0;SSC=0;GPV=1E0;SPV=7.502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:633:632:1:0.16%:341,291,1,0 0/0:.:633:632:1:0.16%:341,291,1,0 -Example1_ref 14958 . G . PASS DP=1246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:623:623:0:0%:333,290,0,0 0/0:.:623:623:0:0%:333,290,0,0 -Example1_ref 14959 . A . PASS DP=1242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:621:620:0:0%:329,291,0,0 0/0:.:621:620:0:0%:329,291,0,0 -Example1_ref 14960 . A . PASS DP=1250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:625:625:0:0%:336,289,0,0 0/0:.:625:625:0:0%:336,289,0,0 -Example1_ref 14961 . G . PASS DP=1288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:644:643:0:0%:346,297,0,0 0/0:.:644:643:0:0%:346,297,0,0 -Example1_ref 14962 . A . PASS DP=1308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:654:653:0:0%:340,313,0,0 0/0:.:654:653:0:0%:340,313,0,0 -Example1_ref 14963 . C . PASS DP=1298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:649:649:0:0%:345,304,0,0 0/0:.:649:649:0:0%:345,304,0,0 -Example1_ref 14964 . T A . PASS DP=1330;SS=0;SSC=0;GPV=1E0;SPV=6.8778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:665:662:2:0.3%:343,319,0,2 0/0:.:665:662:2:0.3%:343,319,0,2 -Example1_ref 14965 . A G . PASS DP=1334;SS=0;SSC=0;GPV=1E0;SPV=6.8778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:665:2:0.3%:348,317,0,2 0/0:.:667:665:2:0.3%:348,317,0,2 -Example1_ref 14966 . G T . PASS DP=1340;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:669:1:0.15%:353,316,1,0 0/0:.:670:669:1:0.15%:353,316,1,0 -Example1_ref 14967 . T . PASS DP=1378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:689:689:0:0%:358,331,0,0 0/0:.:689:689:0:0%:358,331,0,0 -Example1_ref 14968 . A ATCTGTCTC . PASS DP=1370;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:685:684:1:0.15%:352,332,1,0 0/0:.:685:684:1:0.15%:352,332,1,0 -Example1_ref 14969 . T C . PASS DP=1378;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:689:688:1:0.15%:357,331,1,0 0/0:.:689:688:1:0.15%:357,331,1,0 -Example1_ref 14970 . T C . PASS DP=1366;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:683:682:1:0.15%:355,327,1,0 0/0:.:683:682:1:0.15%:355,327,1,0 -Example1_ref 14971 . A T . PASS DP=1368;SS=0;SSC=0;GPV=1E0;SPV=6.8777E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:684:682:2:0.29%:357,325,1,1 0/0:.:684:682:2:0.29%:357,325,1,1 -Example1_ref 14972 . A . PASS DP=1350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:675:0:0%:351,324,0,0 0/0:.:675:675:0:0%:351,324,0,0 -Example1_ref 14973 . G T . PASS DP=1350;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:674:1:0.15%:350,324,1,0 0/0:.:675:674:1:0.15%:350,324,1,0 -Example1_ref 14974 . T . PASS DP=1350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:675:0:0%:352,323,0,0 0/0:.:675:675:0:0%:352,323,0,0 -Example1_ref 14975 . T . PASS DP=1340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:670:0:0%:355,315,0,0 0/0:.:670:670:0:0%:355,315,0,0 -Example1_ref 14976 . G . PASS DP=1318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:659:659:0:0%:353,306,0,0 0/0:.:659:659:0:0%:353,306,0,0 -Example1_ref 14977 . G A . PASS DP=1324;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:661:1:0.15%:352,309,0,1 0/0:.:662:661:1:0.15%:352,309,0,1 -Example1_ref 14978 . AT A . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:670:1:0.15%:352,318,0,1 0/0:.:671:670:1:0.15%:352,318,0,1 -Example1_ref 14979 . T . PASS DP=1324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:662:0:0%:354,308,0,0 0/0:.:662:662:0:0%:354,308,0,0 -Example1_ref 14980 . T C . PASS DP=1302;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:651:649:1:0.15%:341,308,1,0 0/0:.:651:649:1:0.15%:341,308,1,0 -Example1_ref 14981 . T . PASS DP=1326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:663:663:0:0%:353,310,0,0 0/0:.:663:663:0:0%:353,310,0,0 -Example1_ref 14982 . C T . PASS DP=1332;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:665:1:0.15%:352,313,1,0 0/0:.:666:665:1:0.15%:352,313,1,0 -Example1_ref 14983 . G A . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=6.8778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:668:2:0.3%:356,312,0,2 0/0:.:671:668:2:0.3%:356,312,0,2 -Example1_ref 14984 . T . PASS DP=1352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:676:676:0:0%:357,319,0,0 0/0:.:676:676:0:0%:357,319,0,0 -Example1_ref 14985 . T C . PASS DP=1334;SS=0;SSC=0;GPV=1E0;SPV=6.8778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:665:2:0.3%:352,313,1,1 0/0:.:667:665:2:0.3%:352,313,1,1 -Example1_ref 14986 . A T . PASS DP=1346;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:673:672:1:0.15%:357,315,0,1 0/0:.:673:672:1:0.15%:357,315,0,1 -Example1_ref 14987 . T . PASS DP=1336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:668:0:0%:357,311,0,0 0/0:.:668:668:0:0%:357,311,0,0 -Example1_ref 14988 . C . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:671:0:0%:355,316,0,0 0/0:.:671:671:0:0%:355,316,0,0 -Example1_ref 14989 . A . PASS DP=1370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:685:685:0:0%:359,326,0,0 0/0:.:685:685:0:0%:359,326,0,0 -Example1_ref 14990 . T C . PASS DP=1336;SS=0;SSC=0;GPV=1E0;SPV=6.566E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:664:3:0.45%:347,317,2,1 0/0:.:668:664:3:0.45%:347,317,2,1 -Example1_ref 14991 . T C . PASS DP=1336;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:667:1:0.15%:347,320,1,0 0/0:.:668:667:1:0.15%:347,320,1,0 -Example1_ref 14992 . A . PASS DP=1340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:670:0:0%:345,325,0,0 0/0:.:670:670:0:0%:345,325,0,0 -Example1_ref 14993 . T . PASS DP=1322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:342,319,0,0 0/0:.:661:661:0:0%:342,319,0,0 -Example1_ref 14994 . C . PASS DP=1318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:659:659:0:0%:338,321,0,0 0/0:.:659:659:0:0%:338,321,0,0 -Example1_ref 14995 . G A . PASS DP=1300;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:649:1:0.15%:331,318,0,1 0/0:.:650:649:1:0.15%:331,318,0,1 -Example1_ref 14996 . A . PASS DP=1300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:650:0:0%:331,319,0,0 0/0:.:650:650:0:0%:331,319,0,0 -Example1_ref 14997 . C A . PASS DP=1286;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:643:642:1:0.16%:337,305,0,1 0/0:.:643:642:1:0.16%:337,305,0,1 -Example1_ref 14998 . T C . PASS DP=1306;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:653:652:1:0.15%:337,315,1,0 0/0:.:653:652:1:0.15%:337,315,1,0 -Example1_ref 14999 . C . PASS DP=1296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:648:648:0:0%:335,313,0,0 0/0:.:648:648:0:0%:335,313,0,0 -Example1_ref 15000 . G GTA . PASS DP=1310;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:655:654:1:0.15%:334,320,1,0 0/0:.:655:654:1:0.15%:334,320,1,0 -Example1_ref 15001 . A . PASS DP=1322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:341,320,0,0 0/0:.:661:661:0:0%:341,320,0,0 -Example1_ref 15002 . T . PASS DP=1316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:658:658:0:0%:343,315,0,0 0/0:.:658:658:0:0%:343,315,0,0 -Example1_ref 15003 . T . PASS DP=1322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:344,317,0,0 0/0:.:661:661:0:0%:344,317,0,0 -Example1_ref 15004 . A . PASS DP=1314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:657:657:0:0%:334,323,0,0 0/0:.:657:657:0:0%:334,323,0,0 -Example1_ref 15005 . CT C . PASS DP=1312;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:656:655:1:0.15%:346,309,0,1 0/0:.:656:655:1:0.15%:346,309,0,1 -Example1_ref 15006 . T . PASS DP=1330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:665:665:0:0%:348,317,0,0 0/0:.:665:665:0:0%:348,317,0,0 -Example1_ref 15007 . T G . PASS DP=1326;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:663:662:1:0.15%:343,319,1,0 0/0:.:663:662:1:0.15%:343,319,1,0 -Example1_ref 15008 . AC A . PASS DP=1332;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:665:1:0.15%:344,321,0,1 0/0:.:666:665:1:0.15%:344,321,0,1 -Example1_ref 15009 . C . PASS DP=1328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:664:663:0:0%:340,323,0,0 0/0:.:664:663:0:0%:340,323,0,0 -Example1_ref 15010 . G . PASS DP=1306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:653:653:0:0%:334,319,0,0 0/0:.:653:653:0:0%:334,319,0,0 -Example1_ref 15011 . G T . PASS DP=1280;SS=0;SSC=0;GPV=1E0;SPV=7.502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:640:639:1:0.16%:326,313,1,0 0/0:.:640:639:1:0.16%:326,313,1,0 -Example1_ref 15012 . G . PASS DP=1304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:652:652:0:0%:331,321,0,0 0/0:.:652:652:0:0%:331,321,0,0 -Example1_ref 15013 . T . PASS DP=1324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:662:0:0%:341,321,0,0 0/0:.:662:662:0:0%:341,321,0,0 -Example1_ref 15014 . C . PASS DP=1300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:650:0:0%:341,309,0,0 0/0:.:650:650:0:0%:341,309,0,0 -Example1_ref 15015 . G T . PASS DP=1294;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:647:646:1:0.15%:335,311,1,0 0/0:.:647:646:1:0.15%:335,311,1,0 -Example1_ref 15016 . C . PASS DP=1312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:656:656:0:0%:340,316,0,0 0/0:.:656:656:0:0%:340,316,0,0 -Example1_ref 15017 . T A . PASS DP=1324;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:661:1:0.15%:337,324,1,0 0/0:.:662:661:1:0.15%:337,324,1,0 -Example1_ref 15018 . T . PASS DP=1318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:659:659:0:0%:333,326,0,0 0/0:.:659:659:0:0%:333,326,0,0 -Example1_ref 15019 . T . PASS DP=1312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:656:656:0:0%:340,316,0,0 0/0:.:656:656:0:0%:340,316,0,0 -Example1_ref 15020 . C A . PASS DP=1310;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:655:654:1:0.15%:337,317,0,1 0/0:.:655:654:1:0.15%:337,317,0,1 -Example1_ref 15021 . C . PASS DP=1324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:662:0:0%:337,325,0,0 0/0:.:662:662:0:0%:337,325,0,0 -Example1_ref 15022 . T . PASS DP=1332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:666:0:0%:338,328,0,0 0/0:.:666:666:0:0%:338,328,0,0 -Example1_ref 15023 . G . PASS DP=1332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:666:0:0%:341,325,0,0 0/0:.:666:666:0:0%:341,325,0,0 -Example1_ref 15024 . ATG A . PASS DP=1332;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:664:1:0.15%:332,332,0,1 0/0:.:666:664:1:0.15%:332,332,0,1 -Example1_ref 15025 . T . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:670:0:0%:336,334,0,0 0/0:.:671:670:0:0%:336,334,0,0 -Example1_ref 15026 . G . PASS DP=1322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:660:0:0%:327,333,0,0 0/0:.:661:660:0:0%:327,333,0,0 -Example1_ref 15027 . A . PASS DP=1330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:665:665:0:0%:330,335,0,0 0/0:.:665:665:0:0%:330,335,0,0 -Example1_ref 15028 . A . PASS DP=1322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:325,336,0,0 0/0:.:661:661:0:0%:325,336,0,0 -Example1_ref 15029 . A . PASS DP=1334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:667:0:0%:328,339,0,0 0/0:.:667:667:0:0%:328,339,0,0 -Example1_ref 15030 . A . PASS DP=1304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:652:652:0:0%:318,334,0,0 0/0:.:652:652:0:0%:318,334,0,0 -Example1_ref 15031 . A . PASS DP=1322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:324,337,0,0 0/0:.:661:661:0:0%:324,337,0,0 -Example1_ref 15032 . T . PASS DP=1310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:655:655:0:0%:326,329,0,0 0/0:.:655:655:0:0%:326,329,0,0 -Example1_ref 15033 . T G . PASS DP=1328;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:664:663:1:0.15%:324,339,1,0 0/0:.:664:663:1:0.15%:324,339,1,0 -Example1_ref 15034 . T C . PASS DP=1326;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:663:661:1:0.15%:329,332,0,1 0/0:.:663:661:1:0.15%:329,332,0,1 -Example1_ref 15035 . G . PASS DP=1334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:667:0:0%:320,347,0,0 0/0:.:667:667:0:0%:320,347,0,0 -Example1_ref 15036 . A . PASS DP=1354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:677:677:0:0%:328,349,0,0 0/0:.:677:677:0:0%:328,349,0,0 -Example1_ref 15037 . A . PASS DP=1382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:691:691:0:0%:336,355,0,0 0/0:.:691:691:0:0%:336,355,0,0 -Example1_ref 15038 . C A . PASS DP=1382;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:691:689:1:0.14%:337,352,1,0 0/0:.:691:689:1:0.14%:337,352,1,0 -Example1_ref 15039 . A . PASS DP=1386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:693:693:0:0%:346,347,0,0 0/0:.:693:693:0:0%:346,347,0,0 -Example1_ref 15040 . T . PASS DP=1400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:700:700:0:0%:346,354,0,0 0/0:.:700:700:0:0%:346,354,0,0 -Example1_ref 15041 . A C . PASS DP=1408;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:704:703:1:0.14%:348,355,0,1 0/0:.:704:703:1:0.14%:348,355,0,1 -Example1_ref 15042 . G A . PASS DP=1396;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:697:1:0.14%:335,362,1,0 0/0:.:698:697:1:0.14%:335,362,1,0 -Example1_ref 15043 . A G . PASS DP=1406;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:702:1:0.14%:345,357,0,1 0/0:.:703:702:1:0.14%:345,357,0,1 -Example1_ref 15044 . G . PASS DP=1410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:705:0:0%:342,363,0,0 0/0:.:705:705:0:0%:342,363,0,0 -Example1_ref 15045 . C G . PASS DP=1424;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:712:711:1:0.14%:347,364,0,1 0/0:.:712:711:1:0.14%:347,364,0,1 -Example1_ref 15046 . A AC . PASS DP=1460;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:730:729:1:0.14%:348,381,1,0 0/0:.:730:729:1:0.14%:348,381,1,0 -Example1_ref 15047 . C . PASS DP=1456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:728:727:0:0%:348,379,0,0 0/0:.:728:727:0:0%:348,379,0,0 -Example1_ref 15048 . A AG . PASS DP=1454;SS=0;SSC=0;GPV=1E0;SPV=6.8776E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:727:725:2:0.28%:347,378,0,2 0/0:.:727:725:2:0.28%:347,378,0,2 -Example1_ref 15049 . G . PASS DP=1456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:728:728:0:0%:354,374,0,0 0/0:.:728:728:0:0%:354,374,0,0 -Example1_ref 15050 . A ACCTTT . PASS DP=1484;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:742:741:1:0.13%:358,383,1,0 0/0:.:742:741:1:0.13%:358,383,1,0 -Example1_ref 15051 . C . PASS DP=1484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:742:742:0:0%:367,375,0,0 0/0:.:742:742:0:0%:367,375,0,0 -Example1_ref 15052 . T A . PASS DP=1444;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:722:721:1:0.14%:358,363,0,1 0/0:.:722:721:1:0.14%:358,363,0,1 -Example1_ref 15053 . G T . PASS DP=1408;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:704:703:1:0.14%:348,355,1,0 0/0:.:704:703:1:0.14%:348,355,1,0 -Example1_ref 15054 . G T . PASS DP=1404;SS=0;SSC=0;GPV=1E0;SPV=6.8777E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:702:699:2:0.29%:346,353,2,0 0/0:.:702:699:2:0.29%:346,353,2,0 -Example1_ref 15055 . G A . PASS DP=1436;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:718:717:1:0.14%:351,366,0,1 0/0:.:718:717:1:0.14%:351,366,0,1 -Example1_ref 15056 . T C . PASS DP=1440;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:720:719:1:0.14%:357,362,1,0 0/0:.:720:719:1:0.14%:357,362,1,0 -Example1_ref 15057 . A . PASS DP=1402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:701:0:0%:336,365,0,0 0/0:.:701:701:0:0%:336,365,0,0 -Example1_ref 15058 . T . PASS DP=1348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:674:674:0:0%:331,343,0,0 0/0:.:674:674:0:0%:331,343,0,0 -Example1_ref 15059 . GT G . PASS DP=1358;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:679:678:1:0.15%:334,344,0,1 0/0:.:679:678:1:0.15%:334,344,0,1 -Example1_ref 15060 . T TGTATAAGAGACAG . PASS DP=1344;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:672:670:1:0.15%:334,336,0,1 0/0:.:672:670:1:0.15%:334,336,0,1 -Example1_ref 15061 . G T . PASS DP=1332;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:665:1:0.15%:330,335,1,0 0/0:.:666:665:1:0.15%:330,335,1,0 -Example1_ref 15062 . T . PASS DP=1354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:677:677:0:0%:351,326,0,0 0/0:.:677:677:0:0%:351,326,0,0 -Example1_ref 15063 . C . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:671:0:0%:345,326,0,0 0/0:.:671:671:0:0%:345,326,0,0 -Example1_ref 15064 . A . PASS DP=1352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:676:676:0:0%:344,332,0,0 0/0:.:676:676:0:0%:344,332,0,0 -Example1_ref 15065 . T . PASS DP=1340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:670:0:0%:344,326,0,0 0/0:.:670:670:0:0%:344,326,0,0 -Example1_ref 15066 . TA T . PASS DP=1356;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:678:677:1:0.15%:345,332,0,1 0/0:.:678:677:1:0.15%:345,332,0,1 -Example1_ref 15067 . A . PASS DP=1394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:697:696:0:0%:357,339,0,0 0/0:.:697:696:0:0%:357,339,0,0 -Example1_ref 15068 . G A . PASS DP=1410;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:704:1:0.14%:361,343,0,1 0/0:.:705:704:1:0.14%:361,343,0,1 -Example1_ref 15069 . C . PASS DP=1384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:691:0:0%:355,336,0,0 0/0:.:692:691:0:0%:355,336,0,0 -Example1_ref 15070 . T . PASS DP=1392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:696:0:0%:361,335,0,0 0/0:.:696:696:0:0%:361,335,0,0 -Example1_ref 15071 . G . PASS DP=1382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:691:691:0:0%:355,336,0,0 0/0:.:691:691:0:0%:355,336,0,0 -Example1_ref 15072 . A ACAG . PASS DP=1396;SS=0;SSC=0;GPV=1E0;SPV=6.8777E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:695:2:0.29%:357,338,0,2 0/0:.:698:695:2:0.29%:357,338,0,2 -Example1_ref 15073 . T C . PASS DP=1412;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:706:704:1:0.14%:364,340,1,0 0/0:.:706:704:1:0.14%:364,340,1,0 -Example1_ref 15074 . A . PASS DP=1406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:703:0:0%:362,341,0,0 0/0:.:703:703:0:0%:362,341,0,0 -Example1_ref 15075 . C A . PASS DP=1392;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:693:1:0.14%:358,335,1,0 0/0:.:696:693:1:0.14%:358,335,1,0 -Example1_ref 15076 . T . PASS DP=1384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:692:0:0%:360,332,0,0 0/0:.:692:692:0:0%:360,332,0,0 -Example1_ref 15077 . G . PASS DP=1392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:696:0:0%:368,328,0,0 0/0:.:696:696:0:0%:368,328,0,0 -Example1_ref 15078 . A . PASS DP=1412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:706:705:0:0%:362,343,0,0 0/0:.:706:705:0:0%:362,343,0,0 -Example1_ref 15079 . T . PASS DP=1402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:701:0:0%:362,339,0,0 0/0:.:701:701:0:0%:362,339,0,0 -Example1_ref 15080 . T G . PASS DP=1402;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:700:1:0.14%:361,339,0,1 0/0:.:701:700:1:0.14%:361,339,0,1 -Example1_ref 15081 . T . PASS DP=1410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:705:0:0%:364,341,0,0 0/0:.:705:705:0:0%:364,341,0,0 -Example1_ref 15082 . A T . PASS DP=1412;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:706:705:1:0.14%:362,343,1,0 0/0:.:706:705:1:0.14%:362,343,1,0 -Example1_ref 15083 . G . PASS DP=1406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:703:0:0%:361,342,0,0 0/0:.:703:703:0:0%:361,342,0,0 -Example1_ref 15084 . A G . PASS DP=1390;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:695:694:1:0.14%:355,339,1,0 0/0:.:695:694:1:0.14%:355,339,1,0 -Example1_ref 15085 . A G . PASS DP=1384;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:690:1:0.14%:353,337,1,0 0/0:.:692:690:1:0.14%:353,337,1,0 -Example1_ref 15086 . T . PASS DP=1354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:677:677:0:0%:358,319,0,0 0/0:.:677:677:0:0%:358,319,0,0 -Example1_ref 15087 . C . PASS DP=1384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:691:0:0%:361,330,0,0 0/0:.:692:691:0:0%:361,330,0,0 -Example1_ref 15088 . A . PASS DP=1400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:700:700:0:0%:365,335,0,0 0/0:.:700:700:0:0%:365,335,0,0 -Example1_ref 15089 . T . PASS DP=1398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:699:699:0:0%:368,331,0,0 0/0:.:699:699:0:0%:368,331,0,0 -Example1_ref 15090 . T . PASS DP=1396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:698:0:0%:365,333,0,0 0/0:.:698:698:0:0%:365,333,0,0 -Example1_ref 15091 . A . PASS DP=1394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:697:697:0:0%:364,333,0,0 0/0:.:697:697:0:0%:364,333,0,0 -Example1_ref 15092 . A C . PASS DP=1394;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:697:696:1:0.14%:363,333,1,0 0/0:.:697:696:1:0.14%:363,333,1,0 -Example1_ref 15093 . A . PASS DP=1406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:703:0:0%:367,336,0,0 0/0:.:703:703:0:0%:367,336,0,0 -Example1_ref 15094 . G . PASS DP=1392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:696:0:0%:362,334,0,0 0/0:.:696:696:0:0%:362,334,0,0 -Example1_ref 15095 . T TC . PASS DP=1396;SS=0;SSC=0;GPV=1E0;SPV=6.5659E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:693:3:0.43%:359,334,3,0 0/0:.:698:693:3:0.43%:359,334,3,0 -Example1_ref 15096 . T C . PASS DP=1364;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:682:678:1:0.15%:351,327,1,0 0/0:.:682:678:1:0.15%:351,327,1,0 -Example1_ref 15097 . A . PASS DP=1294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:647:647:0:0%:324,323,0,0 0/0:.:647:647:0:0%:324,323,0,0 -Example1_ref 15098 . T C . PASS DP=1272;SS=0;SSC=0;GPV=1E0;SPV=7.502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:636:635:1:0.16%:311,324,1,0 0/0:.:636:635:1:0.16%:311,324,1,0 -Example1_ref 15099 . T . PASS DP=1272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:636:636:0:0%:308,328,0,0 0/0:.:636:636:0:0%:308,328,0,0 -Example1_ref 15100 . G . PASS DP=1262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:631:630:0:0%:301,329,0,0 0/0:.:631:630:0:0%:301,329,0,0 -Example1_ref 15101 . T A . PASS DP=1262;SS=0;SSC=0;GPV=1E0;SPV=7.502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:631:630:1:0.16%:307,323,0,1 0/0:.:631:630:1:0.16%:307,323,0,1 -Example1_ref 15102 . C . PASS DP=1238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:619:619:0:0%:299,320,0,0 0/0:.:619:619:0:0%:299,320,0,0 -Example1_ref 15103 . G . PASS DP=1222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:611:611:0:0%:284,327,0,0 0/0:.:611:611:0:0%:284,327,0,0 -Example1_ref 15104 . A . PASS DP=1228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:614:614:0:0%:286,328,0,0 0/0:.:614:614:0:0%:286,328,0,0 -Example1_ref 15105 . A . PASS DP=1220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:610:610:0:0%:283,327,0,0 0/0:.:610:610:0:0%:283,327,0,0 -Example1_ref 15106 . A . PASS DP=1244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:622:622:0:0%:287,335,0,0 0/0:.:622:622:0:0%:287,335,0,0 -Example1_ref 15107 . A . PASS DP=1238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:619:619:0:0%:286,333,0,0 0/0:.:619:619:0:0%:286,333,0,0 -Example1_ref 15108 . A . PASS DP=1246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:623:623:0:0%:289,334,0,0 0/0:.:623:623:0:0%:289,334,0,0 -Example1_ref 15109 . C . PASS DP=1258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:629:629:0:0%:296,333,0,0 0/0:.:629:629:0:0%:296,333,0,0 -Example1_ref 15110 . AT A . PASS DP=1264;SS=0;SSC=0;GPV=1E0;SPV=7.502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:632:631:1:0.16%:296,335,1,0 0/0:.:632:631:1:0.16%:296,335,1,0 -Example1_ref 15111 . T . PASS DP=1246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:623:623:0:0%:290,333,0,0 0/0:.:623:623:0:0%:290,333,0,0 -Example1_ref 15112 . T . PASS DP=1252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:626:626:0:0%:291,335,0,0 0/0:.:626:626:0:0%:291,335,0,0 -Example1_ref 15113 . A . PASS DP=1266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:633:633:0:0%:296,337,0,0 0/0:.:633:633:0:0%:296,337,0,0 -Example1_ref 15114 . T . PASS DP=1282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:641:641:0:0%:296,345,0,0 0/0:.:641:641:0:0%:296,345,0,0 -Example1_ref 15115 . T . PASS DP=1264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:632:632:0:0%:290,342,0,0 0/0:.:632:632:0:0%:290,342,0,0 -Example1_ref 15116 . A . PASS DP=1278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:639:639:0:0%:290,349,0,0 0/0:.:639:639:0:0%:290,349,0,0 -Example1_ref 15117 . A . PASS DP=1276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:638:638:0:0%:289,349,0,0 0/0:.:638:638:0:0%:289,349,0,0 -Example1_ref 15118 . G . PASS DP=1292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:646:645:0:0%:300,345,0,0 0/0:.:646:645:0:0%:300,345,0,0 -Example1_ref 15119 . AAT A . PASS DP=1320;SS=0;SSC=0;GPV=1E0;SPV=6.3714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:660:655:4:0.61%:299,356,0,4 0/0:.:660:655:4:0.61%:299,356,0,4 -Example1_ref 15120 . A . PASS DP=1322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:304,357,0,0 0/0:.:661:661:0:0%:304,357,0,0 -Example1_ref 15121 . T C . PASS DP=1336;SS=0;SSC=0;GPV=1E0;SPV=6.8778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:666:2:0.3%:313,353,2,0 0/0:.:668:666:2:0.3%:313,353,2,0 -Example1_ref 15122 . T . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:671:0:0%:309,362,0,0 0/0:.:671:671:0:0%:309,362,0,0 -Example1_ref 15123 . A . PASS DP=1364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:682:682:0:0%:315,367,0,0 0/0:.:682:682:0:0%:315,367,0,0 -Example1_ref 15124 . C A . PASS DP=1346;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:673:671:1:0.15%:309,362,0,1 0/0:.:673:671:1:0.15%:309,362,0,1 -Example1_ref 15125 . A . PASS DP=1370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:685:685:0:0%:316,369,0,0 0/0:.:685:685:0:0%:316,369,0,0 -Example1_ref 15126 . GA G . PASS DP=1346;SS=0;SSC=0;GPV=1E0;SPV=6.3713E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:673:669:4:0.59%:302,367,0,4 0/0:.:673:669:4:0.59%:302,367,0,4 -Example1_ref 15127 . A . PASS DP=1344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:672:667:0:0%:307,360,0,0 0/0:.:672:667:0:0%:307,360,0,0 -Example1_ref 15128 . G . PASS DP=1350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:674:0:0%:306,368,0,0 0/0:.:675:674:0:0%:306,368,0,0 -Example1_ref 15129 . A AT . PASS DP=1374;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:687:684:1:0.15%:319,365,0,1 0/0:.:687:684:1:0.15%:319,365,0,1 -Example1_ref 15130 . GT G . PASS DP=1410;SS=0;SSC=0;GPV=1E0;SPV=6.2349E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:699:5:0.71%:322,377,0,5 0/0:.:705:699:5:0.71%:322,377,0,5 -Example1_ref 15131 . T . PASS DP=1428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:714:706:0:0%:331,375,0,0 0/0:.:714:706:0:0%:331,375,0,0 -Example1_ref 15132 . G T . PASS DP=1474;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:737:735:1:0.14%:348,387,1,0 0/0:.:737:735:1:0.14%:348,387,1,0 -Example1_ref 15133 . T . PASS DP=1480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:740:740:0:0%:354,386,0,0 0/0:.:740:740:0:0%:354,386,0,0 -Example1_ref 15134 . A . PASS DP=1496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:748:748:0:0%:350,398,0,0 0/0:.:748:748:0:0%:350,398,0,0 -Example1_ref 15135 . T TAAGAGAC . PASS DP=1478;SS=0;SSC=0;GPV=1E0;SPV=6.3709E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:735:4:0.54%:347,388,0,4 0/0:.:739:735:4:0.54%:347,388,0,4 -Example1_ref 15136 . A . PASS DP=1482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:741:741:0:0%:351,390,0,0 0/0:.:741:741:0:0%:351,390,0,0 -Example1_ref 15137 . G T . PASS DP=1464;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:732:730:1:0.14%:350,380,1,0 0/0:.:732:730:1:0.14%:350,380,1,0 -Example1_ref 15138 . G T . PASS DP=1430;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:715:713:1:0.14%:343,370,1,0 0/0:.:715:713:1:0.14%:343,370,1,0 -Example1_ref 15139 . G T . PASS DP=1434;SS=0;SSC=0;GPV=1E0;SPV=6.8776E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:714:2:0.28%:343,371,2,0 0/0:.:717:714:2:0.28%:343,371,2,0 -Example1_ref 15140 . T . PASS DP=1424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:712:712:0:0%:352,360,0,0 0/0:.:712:712:0:0%:352,360,0,0 -Example1_ref 15141 . C A . PASS DP=1380;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:690:688:1:0.15%:350,338,0,1 0/0:.:690:688:1:0.15%:350,338,0,1 -Example1_ref 15142 . A . PASS DP=1404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:702:702:0:0%:353,349,0,0 0/0:.:702:702:0:0%:353,349,0,0 -Example1_ref 15143 . A . PASS DP=1436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:718:718:0:0%:361,357,0,0 0/0:.:718:718:0:0%:361,357,0,0 -Example1_ref 15144 . T . PASS DP=1438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:719:719:0:0%:361,358,0,0 0/0:.:719:719:0:0%:361,358,0,0 -Example1_ref 15145 . A T . PASS DP=1444;SS=0;SSC=0;GPV=1E0;SPV=6.8776E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:722:720:2:0.28%:359,361,1,1 0/0:.:722:720:2:0.28%:359,361,1,1 -Example1_ref 15146 . T C . PASS DP=1444;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:722:721:1:0.14%:366,355,1,0 0/0:.:722:721:1:0.14%:366,355,1,0 -Example1_ref 15147 . C . PASS DP=1420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:710:710:0:0%:368,342,0,0 0/0:.:710:710:0:0%:368,342,0,0 -Example1_ref 15148 . A T . PASS DP=1442;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:721:720:1:0.14%:367,353,1,0 0/0:.:721:720:1:0.14%:367,353,1,0 -Example1_ref 15149 . T . PASS DP=1458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:729:729:0:0%:372,357,0,0 0/0:.:729:729:0:0%:372,357,0,0 -Example1_ref 15150 . A G . PASS DP=1428;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:714:713:1:0.14%:361,352,1,0 0/0:.:714:713:1:0.14%:361,352,1,0 -Example1_ref 15151 . T C . PASS DP=1434;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:716:1:0.14%:365,351,1,0 0/0:.:717:716:1:0.14%:365,351,1,0 -Example1_ref 15152 . T C . PASS DP=1402;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:700:1:0.14%:362,338,1,0 0/0:.:701:700:1:0.14%:362,338,1,0 -Example1_ref 15153 . G T . PASS DP=1392;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:695:1:0.14%:359,336,0,1 0/0:.:696:695:1:0.14%:359,336,0,1 -Example1_ref 15154 . G T . PASS DP=1410;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:704:1:0.14%:350,354,1,0 0/0:.:705:704:1:0.14%:350,354,1,0 -Example1_ref 15155 . T . PASS DP=1454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:727:727:0:0%:366,361,0,0 0/0:.:727:727:0:0%:366,361,0,0 -Example1_ref 15156 . T . PASS DP=1446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:723:723:0:0%:358,365,0,0 0/0:.:723:723:0:0%:358,365,0,0 -Example1_ref 15157 . T . PASS DP=1434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:717:0:0%:360,357,0,0 0/0:.:717:717:0:0%:360,357,0,0 -Example1_ref 15158 . CT C . PASS DP=1434;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:716:1:0.14%:363,353,0,1 0/0:.:717:716:1:0.14%:363,353,0,1 -Example1_ref 15159 . T . PASS DP=1458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:729:728:0:0%:364,364,0,0 0/0:.:729:728:0:0%:364,364,0,0 -Example1_ref 15160 . A . PASS DP=1480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:740:740:0:0%:368,372,0,0 0/0:.:740:740:0:0%:368,372,0,0 -Example1_ref 15161 . A . PASS DP=1474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:737:737:0:0%:363,374,0,0 0/0:.:737:737:0:0%:363,374,0,0 -Example1_ref 15162 . C A . PASS DP=1438;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:719:718:1:0.14%:364,354,0,1 0/0:.:719:718:1:0.14%:364,354,0,1 -Example1_ref 15163 . C A . PASS DP=1462;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:731:730:1:0.14%:360,370,0,1 0/0:.:731:730:1:0.14%:360,370,0,1 -Example1_ref 15164 . A . PASS DP=1478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:367,372,0,0 0/0:.:739:739:0:0%:367,372,0,0 -Example1_ref 15165 . A . PASS DP=1478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:362,377,0,0 0/0:.:739:739:0:0%:362,377,0,0 -Example1_ref 15166 . A . PASS DP=1478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:363,376,0,0 0/0:.:739:739:0:0%:363,376,0,0 -Example1_ref 15167 . G . PASS DP=1466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:733:733:0:0%:356,377,0,0 0/0:.:733:733:0:0%:356,377,0,0 -Example1_ref 15168 . A T . PASS DP=1468;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:734:733:1:0.14%:357,376,0,1 0/0:.:734:733:1:0.14%:357,376,0,1 -Example1_ref 15169 . A G . PASS DP=1488;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:744:743:1:0.13%:364,379,0,1 0/0:.:744:743:1:0.13%:364,379,0,1 -Example1_ref 15170 . A . PASS DP=1486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:743:742:0:0%:366,376,0,0 0/0:.:743:742:0:0%:366,376,0,0 -Example1_ref 15171 . T G . PASS DP=1478;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:738:1:0.14%:364,374,1,0 0/0:.:739:738:1:0.14%:364,374,1,0 -Example1_ref 15172 . T . PASS DP=1504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:752:752:0:0%:368,384,0,0 0/0:.:752:752:0:0%:368,384,0,0 -Example1_ref 15173 . A G . PASS DP=1510;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:755:754:1:0.13%:369,385,0,1 0/0:.:755:754:1:0.13%:369,385,0,1 -Example1_ref 15174 . A T . PASS DP=1502;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:751:750:1:0.13%:362,388,0,1 0/0:.:751:750:1:0.13%:362,388,0,1 -Example1_ref 15175 . A . PASS DP=1502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:751:751:0:0%:366,385,0,0 0/0:.:751:751:0:0%:366,385,0,0 -Example1_ref 15176 . A C . PASS DP=1476;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:738:736:1:0.14%:349,387,1,0 0/0:.:738:736:1:0.14%:349,387,1,0 -Example1_ref 15177 . T . PASS DP=1496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:748:748:0:0%:362,386,0,0 0/0:.:748:748:0:0%:362,386,0,0 -Example1_ref 15178 . A ACCTGTCT . PASS DP=1490;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:745:744:1:0.13%:359,385,1,0 0/0:.:745:744:1:0.13%:359,385,1,0 -Example1_ref 15179 . C . PASS DP=1458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:729:729:0:0%:353,376,0,0 0/0:.:729:729:0:0%:353,376,0,0 -Example1_ref 15180 . T C . PASS DP=1468;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:734:733:1:0.14%:354,379,0,1 0/0:.:734:733:1:0.14%:354,379,0,1 -Example1_ref 15181 . T . PASS DP=1478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:356,383,0,0 0/0:.:739:739:0:0%:356,383,0,0 -Example1_ref 15182 . A . PASS DP=1482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:741:741:0:0%:358,383,0,0 0/0:.:741:741:0:0%:358,383,0,0 -Example1_ref 15183 . T . PASS DP=1496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:748:748:0:0%:359,389,0,0 0/0:.:748:748:0:0%:359,389,0,0 -Example1_ref 15184 . G A . PASS DP=1510;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:755:754:1:0.13%:356,398,1,0 0/0:.:755:754:1:0.13%:356,398,1,0 -Example1_ref 15185 . A . PASS DP=1514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:757:757:0:0%:360,397,0,0 0/0:.:757:757:0:0%:360,397,0,0 -Example1_ref 15186 . A . PASS DP=1530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:765:765:0:0%:352,413,0,0 0/0:.:765:765:0:0%:352,413,0,0 -Example1_ref 15187 . A . PASS DP=1526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:763:763:0:0%:346,417,0,0 0/0:.:763:763:0:0%:346,417,0,0 -Example1_ref 15188 . T . PASS DP=1568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:784:784:0:0%:356,428,0,0 0/0:.:784:784:0:0%:356,428,0,0 -Example1_ref 15189 . T . PASS DP=1580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:790:790:0:0%:348,442,0,0 0/0:.:790:790:0:0%:348,442,0,0 -Example1_ref 15190 . G . PASS DP=1576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:788:785:0:0%:340,445,0,0 0/0:.:788:785:0:0%:340,445,0,0 -Example1_ref 15191 . A . PASS DP=1584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:792:792:0:0%:342,450,0,0 0/0:.:792:792:0:0%:342,450,0,0 -Example1_ref 15192 . T A . PASS DP=1622;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:811:810:1:0.12%:346,464,0,1 0/0:.:811:810:1:0.12%:346,464,0,1 -Example1_ref 15193 . T . PASS DP=1682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:841:0:0%:347,494,0,0 0/0:.:841:841:0:0%:347,494,0,0 -Example1_ref 15194 . G . PASS DP=1666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:833:833:0:0%:338,495,0,0 0/0:.:833:833:0:0%:338,495,0,0 -Example1_ref 15195 . G T . PASS DP=1650;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:825:824:1:0.12%:325,499,1,0 0/0:.:825:824:1:0.12%:325,499,1,0 -Example1_ref 15196 . T A . PASS DP=1644;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:822:819:1:0.12%:336,483,0,1 0/0:.:822:819:1:0.12%:336,483,0,1 -Example1_ref 15197 . G . PASS DP=1600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:800:800:0:0%:317,483,0,0 0/0:.:800:800:0:0%:317,483,0,0 -Example1_ref 15198 . G A . PASS DP=1652;SS=0;SSC=0;GPV=1E0;SPV=6.8773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:826:823:2:0.24%:327,496,0,2 0/0:.:826:823:2:0.24%:327,496,0,2 -Example1_ref 15199 . T C . PASS DP=1682;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:839:1:0.12%:342,497,0,1 0/0:.:841:839:1:0.12%:342,497,0,1 -Example1_ref 15200 . G T . PASS DP=1642;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:821:820:1:0.12%:327,493,1,0 0/0:.:821:820:1:0.12%:327,493,1,0 -Example1_ref 15201 . C . PASS DP=1632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:816:816:0:0%:334,482,0,0 0/0:.:816:816:0:0%:334,482,0,0 -Example1_ref 15202 . T . PASS DP=1678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:839:839:0:0%:340,499,0,0 0/0:.:839:839:0:0%:340,499,0,0 -Example1_ref 15203 . A G . PASS DP=1694;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:847:846:1:0.12%:341,505,1,0 0/0:.:847:846:1:0.12%:341,505,1,0 -Example1_ref 15204 . A T . PASS DP=1678;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:839:838:1:0.12%:340,498,1,0 0/0:.:839:838:1:0.12%:340,498,1,0 -Example1_ref 15205 . A . PASS DP=1708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:853:0:0%:349,504,0,0 0/0:.:854:853:0:0%:349,504,0,0 -Example1_ref 15206 . T . PASS DP=1692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:846:0:0%:349,497,0,0 0/0:.:846:846:0:0%:349,497,0,0 -Example1_ref 15207 . T . PASS DP=1670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:835:835:0:0%:341,494,0,0 0/0:.:835:835:0:0%:341,494,0,0 -Example1_ref 15208 . A . PASS DP=1700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:850:0:0%:351,499,0,0 0/0:.:850:850:0:0%:351,499,0,0 -Example1_ref 15209 . C A . PASS DP=1656;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:828:827:1:0.12%:351,476,0,1 0/0:.:828:827:1:0.12%:351,476,0,1 -Example1_ref 15210 . T . PASS DP=1692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:846:0:0%:352,494,0,0 0/0:.:846:846:0:0%:352,494,0,0 -Example1_ref 15211 . A . PASS DP=1698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:849:849:0:0%:353,496,0,0 0/0:.:849:849:0:0%:353,496,0,0 -Example1_ref 15212 . G A . PASS DP=1664;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:832:831:1:0.12%:347,484,0,1 0/0:.:832:831:1:0.12%:347,484,0,1 -Example1_ref 15213 . G T . PASS DP=1664;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:832:831:1:0.12%:336,495,1,0 0/0:.:832:831:1:0.12%:336,495,1,0 -Example1_ref 15214 . A . PASS DP=1654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:827:827:0:0%:338,489,0,0 0/0:.:827:827:0:0%:338,489,0,0 -Example1_ref 15215 . A C . PASS DP=1670;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:835:834:1:0.12%:342,492,1,0 0/0:.:835:834:1:0.12%:342,492,1,0 -Example1_ref 15216 . T A . PASS DP=1724;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:862:860:1:0.12%:356,504,0,1 0/0:.:862:860:1:0.12%:356,504,0,1 -Example1_ref 15217 . T . PASS DP=1672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:836:836:0:0%:352,484,0,0 0/0:.:836:836:0:0%:352,484,0,0 -Example1_ref 15218 . C A . PASS DP=1690;SS=0;SSC=0;GPV=1E0;SPV=6.8772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:841:2:0.24%:348,493,0,2 0/0:.:845:841:2:0.24%:348,493,0,2 -Example1_ref 15219 . C G . PASS DP=1688;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:844:842:1:0.12%:337,505,0,1 0/0:.:844:842:1:0.12%:337,505,0,1 -Example1_ref 15220 . T . PASS DP=1742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:871:871:0:0%:349,522,0,0 0/0:.:871:871:0:0%:349,522,0,0 -Example1_ref 15221 . A . PASS DP=1748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:874:874:0:0%:352,522,0,0 0/0:.:874:874:0:0%:352,522,0,0 -Example1_ref 15222 . A G . PASS DP=1732;SS=0;SSC=0;GPV=1E0;SPV=7.5014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:866:865:1:0.12%:338,527,1,0 0/0:.:866:865:1:0.12%:338,527,1,0 -Example1_ref 15223 . A . PASS DP=1762;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:881:881:0:0%:351,530,0,0 0/0:.:881:881:0:0%:351,530,0,0 -Example1_ref 15224 . CA C . PASS DP=1730;SS=0;SSC=0;GPV=1E0;SPV=6.8772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:865:861:2:0.23%:344,517,2,0 0/0:.:865:861:2:0.23%:344,517,2,0 -Example1_ref 15225 . A G . PASS DP=1750;SS=0;SSC=0;GPV=1E0;SPV=7.5014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:875:873:1:0.11%:343,530,0,1 0/0:.:875:873:1:0.11%:343,530,0,1 -Example1_ref 15226 . A . PASS DP=1826;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:913:913:0:0%:342,571,0,0 0/0:.:913:913:0:0%:342,571,0,0 -Example1_ref 15227 . T . PASS DP=1798;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:899:899:0:0%:339,560,0,0 0/0:.:899:899:0:0%:339,560,0,0 -Example1_ref 15228 . A . PASS DP=1830;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:915:915:0:0%:341,574,0,0 0/0:.:915:915:0:0%:341,574,0,0 -Example1_ref 15229 . TA T . PASS DP=1800;SS=0;SSC=0;GPV=1E0;SPV=7.5014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:900:899:1:0.11%:332,567,0,1 0/0:.:900:899:1:0.11%:332,567,0,1 -Example1_ref 15230 . A G . PASS DP=1820;SS=0;SSC=0;GPV=1E0;SPV=7.5014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:910:908:1:0.11%:335,573,1,0 0/0:.:910:908:1:0.11%:335,573,1,0 -Example1_ref 15231 . A . PASS DP=1808;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:904:904:0:0%:325,579,0,0 0/0:.:904:904:0:0%:325,579,0,0 -Example1_ref 15232 . A . PASS DP=1786;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:893:893:0:0%:320,573,0,0 0/0:.:893:893:0:0%:320,573,0,0 -Example1_ref 15233 . G . PASS DP=1772;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:886:886:0:0%:314,572,0,0 0/0:.:886:886:0:0%:314,572,0,0 -Example1_ref 15234 . A G . PASS DP=1720;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:860:859:1:0.12%:303,556,0,1 0/0:.:860:859:1:0.12%:303,556,0,1 -Example1_ref 15235 . A AC . PASS DP=1740;SS=0;SSC=0;GPV=1E0;SPV=7.5014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:870:868:1:0.12%:313,555,1,0 0/0:.:870:868:1:0.12%:313,555,1,0 -Example1_ref 15236 . C A . PASS DP=1652;SS=0;SSC=0;GPV=1E0;SPV=6.2342E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:826:821:5:0.61%:307,514,0,5 0/0:.:826:821:5:0.61%:307,514,0,5 -Example1_ref 15237 . C A . PASS DP=1656;SS=0;SSC=0;GPV=1E0;SPV=6.8773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:828:825:2:0.24%:298,527,0,2 0/0:.:828:825:2:0.24%:298,527,0,2 -Example1_ref 15238 . C A . PASS DP=1700;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:849:1:0.12%:304,545,0,1 0/0:.:850:849:1:0.12%:304,545,0,1 -Example1_ref 15239 . G A . PASS DP=1712;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:856:855:1:0.12%:297,558,1,0 0/0:.:856:855:1:0.12%:297,558,1,0 -Example1_ref 15240 . A . PASS DP=1710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:855:855:0:0%:296,559,0,0 0/0:.:855:855:0:0%:296,559,0,0 -Example1_ref 15241 . A . PASS DP=1724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:862:862:0:0%:300,562,0,0 0/0:.:862:862:0:0%:300,562,0,0 -Example1_ref 15242 . G T . PASS DP=1692;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:844:1:0.12%:288,556,1,0 0/0:.:846:844:1:0.12%:288,556,1,0 -Example1_ref 15243 . A . PASS DP=1710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:855:855:0:0%:293,562,0,0 0/0:.:855:855:0:0%:293,562,0,0 -Example1_ref 15244 . A . PASS DP=1702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:851:0:0%:291,560,0,0 0/0:.:851:851:0:0%:291,560,0,0 -Example1_ref 15245 . C A . PASS DP=1706;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:853:852:1:0.12%:290,562,0,1 0/0:.:853:852:1:0.12%:290,562,0,1 -Example1_ref 15246 . A . PASS DP=1716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:858:858:0:0%:293,565,0,0 0/0:.:858:858:0:0%:293,565,0,0 -Example1_ref 15247 . G . PASS DP=1714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:856:0:0%:289,567,0,0 0/0:.:857:856:0:0%:289,567,0,0 -Example1_ref 15248 . T . PASS DP=1714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:857:0:0%:291,566,0,0 0/0:.:857:857:0:0%:291,566,0,0 -Example1_ref 15249 . T . PASS DP=1722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:861:861:0:0%:290,571,0,0 0/0:.:861:861:0:0%:290,571,0,0 -Example1_ref 15250 . A . PASS DP=1792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:896:896:0:0%:294,602,0,0 0/0:.:896:896:0:0%:294,602,0,0 -Example1_ref 15251 . C A . PASS DP=1728;SS=0;SSC=0;GPV=1E0;SPV=7.5014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:864:863:1:0.12%:282,581,0,1 0/0:.:864:863:1:0.12%:282,581,0,1 -Example1_ref 15252 . T . PASS DP=1752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:876:874:0:0%:284,590,0,0 0/0:.:876:874:0:0%:284,590,0,0 -Example1_ref 15253 . A . PASS DP=1766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:883:883:0:0%:277,606,0,0 0/0:.:883:883:0:0%:277,606,0,0 -Example1_ref 15254 . G T . PASS DP=1768;SS=0;SSC=0;GPV=1E0;SPV=6.8771E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:884:882:2:0.23%:273,609,2,0 0/0:.:884:882:2:0.23%:273,609,2,0 -Example1_ref 15255 . A . PASS DP=1754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:877:877:0:0%:274,603,0,0 0/0:.:877:877:0:0%:274,603,0,0 -Example1_ref 15256 . A . PASS DP=1754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:877:876:0:0%:280,596,0,0 0/0:.:877:876:0:0%:280,596,0,0 -Example1_ref 15257 . C . PASS DP=1708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:853:0:0%:257,596,0,0 0/0:.:854:853:0:0%:257,596,0,0 -Example1_ref 15258 . A G . PASS DP=1702;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:848:1:0.12%:255,593,0,1 0/0:.:851:848:1:0.12%:255,593,0,1 -Example1_ref 15259 . C A . PASS DP=1702;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:849:1:0.12%:258,591,0,1 0/0:.:851:849:1:0.12%:258,591,0,1 -Example1_ref 15260 . T . PASS DP=1724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:862:862:0:0%:262,600,0,0 0/0:.:862:862:0:0%:262,600,0,0 -Example1_ref 15261 . A . PASS DP=1738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:869:869:0:0%:257,612,0,0 0/0:.:869:869:0:0%:257,612,0,0 -Example1_ref 15262 . C A . PASS DP=1716;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:858:856:1:0.12%:252,604,0,1 0/0:.:858:856:1:0.12%:252,604,0,1 -Example1_ref 15263 . A . PASS DP=1734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:867:866:0:0%:257,609,0,0 0/0:.:867:866:0:0%:257,609,0,0 -Example1_ref 15264 . A AT . PASS DP=1706;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:853:852:1:0.12%:247,605,0,1 0/0:.:853:852:1:0.12%:247,605,0,1 -Example1_ref 15265 . T C . PASS DP=1680;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:840:838:1:0.12%:250,588,1,0 0/0:.:840:838:1:0.12%:250,588,1,0 -Example1_ref 15266 . C A . PASS DP=1656;SS=0;SSC=0;GPV=1E0;SPV=6.8773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:828:823:2:0.24%:234,589,0,2 0/0:.:828:823:2:0.24%:234,589,0,2 -Example1_ref 15267 . A . PASS DP=1680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:840:839:0:0%:238,601,0,0 0/0:.:840:839:0:0%:238,601,0,0 -Example1_ref 15268 . A G . PASS DP=1690;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:843:1:0.12%:241,602,0,1 0/0:.:845:843:1:0.12%:241,602,0,1 -Example1_ref 15269 . C A . PASS DP=1686;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:843:842:1:0.12%:242,600,0,1 0/0:.:843:842:1:0.12%:242,600,0,1 -Example1_ref 15270 . ATG A . PASS DP=1700;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:846:1:0.12%:241,605,1,0 0/0:.:850:846:1:0.12%:241,605,1,0 -Example1_ref 15271 . T C . PASS DP=1706;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:853:851:1:0.12%:241,610,1,0 0/0:.:853:851:1:0.12%:241,610,1,0 -Example1_ref 15272 . G A . PASS DP=1682;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:839:1:0.12%:232,607,1,0 0/0:.:841:839:1:0.12%:232,607,1,0 -Example1_ref 15273 . A G . PASS DP=1690;SS=0;SSC=0;GPV=1E0;SPV=6.8772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:843:2:0.24%:236,607,0,2 0/0:.:845:843:2:0.24%:236,607,0,2 -Example1_ref 15274 . T . PASS DP=1682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:841:0:0%:240,601,0,0 0/0:.:841:841:0:0%:240,601,0,0 -Example1_ref 15275 . G A . PASS DP=1692;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:844:1:0.12%:236,608,0,1 0/0:.:846:844:1:0.12%:236,608,0,1 -Example1_ref 15276 . A . PASS DP=1694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:847:847:0:0%:238,609,0,0 0/0:.:847:847:0:0%:238,609,0,0 -Example1_ref 15277 . A . PASS DP=1682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:841:0:0%:229,612,0,0 0/0:.:841:841:0:0%:229,612,0,0 -Example1_ref 15278 . T . PASS DP=1638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:819:818:0:0%:229,589,0,0 0/0:.:819:818:0:0%:229,589,0,0 -Example1_ref 15279 . T . PASS DP=1690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:845:0:0%:234,611,0,0 0/0:.:845:845:0:0%:234,611,0,0 -Example1_ref 15280 . T . PASS DP=1684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:842:842:0:0%:229,613,0,0 0/0:.:842:842:0:0%:229,613,0,0 -Example1_ref 15281 . G . PASS DP=1690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:845:0:0%:230,615,0,0 0/0:.:845:845:0:0%:230,615,0,0 -Example1_ref 15282 . A . PASS DP=1698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:849:849:0:0%:231,618,0,0 0/0:.:849:849:0:0%:231,618,0,0 -Example1_ref 15283 . T . PASS DP=1678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:839:839:0:0%:231,608,0,0 0/0:.:839:839:0:0%:231,608,0,0 -Example1_ref 15284 . A . PASS DP=1698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:849:849:0:0%:232,617,0,0 0/0:.:849:849:0:0%:232,617,0,0 -Example1_ref 15285 . T . PASS DP=1666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:833:833:0:0%:231,602,0,0 0/0:.:833:833:0:0%:231,602,0,0 -Example1_ref 15286 . C . PASS DP=1654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:827:826:0:0%:228,598,0,0 0/0:.:827:826:0:0%:228,598,0,0 -Example1_ref 15287 . G . PASS DP=1674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:837:836:0:0%:221,615,0,0 0/0:.:837:836:0:0%:221,615,0,0 -Example1_ref 15288 . AT A . PASS DP=1714;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:856:1:0.12%:230,626,0,1 0/0:.:857:856:1:0.12%:230,626,0,1 -Example1_ref 15289 . T . PASS DP=1676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:838:838:0:0%:227,611,0,0 0/0:.:838:838:0:0%:227,611,0,0 -Example1_ref 15290 . T . PASS DP=1696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:848:848:0:0%:227,621,0,0 0/0:.:848:848:0:0%:227,621,0,0 -Example1_ref 15291 . A . PASS DP=1704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:852:852:0:0%:230,622,0,0 0/0:.:852:852:0:0%:230,622,0,0 -Example1_ref 15292 . A . PASS DP=1690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:845:0:0%:228,617,0,0 0/0:.:845:845:0:0%:228,617,0,0 -Example1_ref 15293 . G A . PASS DP=1676;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:838:835:1:0.12%:221,614,0,1 0/0:.:838:835:1:0.12%:221,614,0,1 -Example1_ref 15294 . A . PASS DP=1718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:859:859:0:0%:229,630,0,0 0/0:.:859:859:0:0%:229,630,0,0 -Example1_ref 15295 . C . PASS DP=1694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:847:847:0:0%:228,619,0,0 0/0:.:847:847:0:0%:228,619,0,0 -Example1_ref 15296 . A . PASS DP=1708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:854:0:0%:230,624,0,0 0/0:.:854:854:0:0%:230,624,0,0 -Example1_ref 15297 . C A . PASS DP=1700;SS=0;SSC=0;GPV=1E0;SPV=7.5015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:848:1:0.12%:222,626,0,1 0/0:.:850:848:1:0.12%:222,626,0,1 -Example1_ref 15298 . A . PASS DP=1714;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:857:0:0%:224,633,0,0 0/0:.:857:857:0:0%:224,633,0,0 -Example1_ref 15299 . A . PASS DP=1708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:854:0:0%:219,635,0,0 0/0:.:854:854:0:0%:219,635,0,0 -Example1_ref 15300 . A . PASS DP=1736;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:868:868:0:0%:215,653,0,0 0/0:.:868:868:0:0%:215,653,0,0 -Example1_ref 15301 . T . PASS DP=1730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:865:864:0:0%:218,646,0,0 0/0:.:865:864:0:0%:218,646,0,0 -Example1_ref 15302 . A . PASS DP=1734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:867:867:0:0%:218,649,0,0 0/0:.:867:867:0:0%:218,649,0,0 -Example1_ref 15303 . C A . PASS DP=1722;SS=0;SSC=0;GPV=1E0;SPV=6.8772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:861:858:2:0.23%:210,648,1,1 0/0:.:861:858:2:0.23%:210,648,1,1 -Example1_ref 15304 . A . PASS DP=1708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:854:0:0%:213,641,0,0 0/0:.:854:854:0:0%:213,641,0,0 -Example1_ref 15305 . A . PASS DP=1702;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:851:0:0%:209,642,0,0 0/0:.:851:851:0:0%:209,642,0,0 -Example1_ref 15306 . T . PASS DP=1668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:834:834:0:0%:211,623,0,0 0/0:.:834:834:0:0%:211,623,0,0 -Example1_ref 15307 . A . PASS DP=1672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:836:835:0:0%:205,630,0,0 0/0:.:836:835:0:0%:205,630,0,0 -Example1_ref 15308 . G GCTGTCTCTT . PASS DP=1610;SS=0;SSC=0;GPV=1E0;SPV=7.5016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:805:802:1:0.12%:177,625,1,0 0/0:.:805:802:1:0.12%:177,625,1,0 -Example1_ref 15309 . A G . PASS DP=1534;SS=0;SSC=0;GPV=1E0;SPV=7.5016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:767:766:1:0.13%:178,588,0,1 0/0:.:767:766:1:0.13%:178,588,0,1 -Example1_ref 15310 . G . PASS DP=1526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:763:763:0:0%:168,595,0,0 0/0:.:763:763:0:0%:168,595,0,0 -Example1_ref 15311 . A ACTGTC . PASS DP=1548;SS=0;SSC=0;GPV=1E0;SPV=6.8774E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:774:769:2:0.26%:170,599,2,0 0/0:.:774:769:2:0.26%:170,599,2,0 -Example1_ref 15312 . T . PASS DP=1482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:741:740:0:0%:166,574,0,0 0/0:.:741:740:0:0%:166,574,0,0 -Example1_ref 15313 . A G . PASS DP=1484;SS=0;SSC=0;GPV=1E0;SPV=6.8775E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:742:738:2:0.27%:162,576,2,0 0/0:.:742:738:2:0.27%:162,576,2,0 -Example1_ref 15314 . T G . PASS DP=1454;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:727:726:1:0.14%:163,563,0,1 0/0:.:727:726:1:0.14%:163,563,0,1 -Example1_ref 15315 . A C . PASS DP=1480;SS=0;SSC=0;GPV=1E0;SPV=6.5657E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:740:736:3:0.41%:165,571,3,0 0/0:.:740:736:3:0.41%:165,571,3,0 -Example1_ref 15316 . T TCACTGTCC . PASS DP=1434;SS=0;SSC=0;GPV=1E0;SPV=7.5017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:716:1:0.14%:162,554,1,0 0/0:.:717:716:1:0.14%:162,554,1,0 -Example1_ref 15317 . C A . PASS DP=1396;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:697:1:0.14%:154,543,1,0 0/0:.:698:697:1:0.14%:154,543,1,0 -Example1_ref 15318 . T TC . PASS DP=1366;SS=0;SSC=0;GPV=1E0;SPV=7.5018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:683:682:1:0.15%:150,532,1,0 0/0:.:683:682:1:0.15%:150,532,1,0 -Example1_ref 15319 . T A . PASS DP=1300;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:648:1:0.15%:146,502,0,1 0/0:.:650:648:1:0.15%:146,502,0,1 -Example1_ref 15320 . G . PASS DP=1248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:624:624:0:0%:123,501,0,0 0/0:.:624:624:0:0%:123,501,0,0 -Example1_ref 15321 . A T . PASS DP=1292;SS=0;SSC=0;GPV=1E0;SPV=7.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:646:645:1:0.15%:137,508,1,0 0/0:.:646:645:1:0.15%:137,508,1,0 -Example1_ref 15322 . C A . PASS DP=1228;SS=0;SSC=0;GPV=1E0;SPV=7.502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:614:611:1:0.16%:115,496,0,1 0/0:.:614:611:1:0.16%:115,496,0,1 -Example1_ref 15323 . C . PASS DP=1222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:611:611:0:0%:115,496,0,0 0/0:.:611:611:0:0%:115,496,0,0 -Example1_ref 15324 . T . PASS DP=1212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:606:606:0:0%:120,486,0,0 0/0:.:606:606:0:0%:120,486,0,0 -Example1_ref 15325 . T A . PASS DP=1218;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:609:608:1:0.16%:118,490,0,1 0/0:.:609:608:1:0.16%:118,490,0,1 -Example1_ref 15326 . T A . PASS DP=1220;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:610:609:1:0.16%:119,490,0,1 0/0:.:610:609:1:0.16%:119,490,0,1 -Example1_ref 15327 . A . PASS DP=1218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:609:609:0:0%:115,494,0,0 0/0:.:609:609:0:0%:115,494,0,0 -Example1_ref 15328 . T . PASS DP=1200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:600:600:0:0%:114,486,0,0 0/0:.:600:600:0:0%:114,486,0,0 -Example1_ref 15329 . C . PASS DP=1196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:598:598:0:0%:108,490,0,0 0/0:.:598:598:0:0%:108,490,0,0 -Example1_ref 15330 . T . PASS DP=1176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:588:588:0:0%:107,481,0,0 0/0:.:588:588:0:0%:107,481,0,0 -Example1_ref 15331 . C A . PASS DP=1176;SS=0;SSC=0;GPV=1E0;SPV=7.5021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:588:587:1:0.17%:105,482,0,1 0/0:.:588:587:1:0.17%:105,482,0,1 -Example1_ref 15332 . T . PASS DP=1160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:580:580:0:0%:104,476,0,0 0/0:.:580:580:0:0%:104,476,0,0 -Example1_ref 15333 . A . PASS DP=1152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:576:576:0:0%:96,480,0,0 0/0:.:576:576:0:0%:96,480,0,0 -Example1_ref 15334 . A . PASS DP=1148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:574:574:0:0%:96,478,0,0 0/0:.:574:574:0:0%:96,478,0,0 -Example1_ref 15335 . G . PASS DP=1122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:561:561:0:0%:88,473,0,0 0/0:.:561:561:0:0%:88,473,0,0 -Example1_ref 15336 . C CCCTGT . PASS DP=1098;SS=0;SSC=0;GPV=1E0;SPV=7.5023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:549:548:1:0.18%:81,467,1,0 0/0:.:549:548:1:0.18%:81,467,1,0 -Example1_ref 15337 . C . PASS DP=1100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:550:550:0:0%:84,466,0,0 0/0:.:550:550:0:0%:84,466,0,0 -Example1_ref 15338 . T . PASS DP=1062;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:531:0:0%:89,442,0,0 0/0:.:531:531:0:0%:89,442,0,0 -Example1_ref 15339 . A C . PASS DP=1062;SS=0;SSC=0;GPV=1E0;SPV=7.5024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:530:1:0.19%:85,445,0,1 0/0:.:531:530:1:0.19%:85,445,0,1 -Example1_ref 15340 . A . PASS DP=1058;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:529:529:0:0%:85,444,0,0 0/0:.:529:529:0:0%:85,444,0,0 -Example1_ref 15341 . G . PASS DP=1030;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:515:515:0:0%:80,435,0,0 0/0:.:515:515:0:0%:80,435,0,0 -Example1_ref 15342 . G T . PASS DP=1018;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:508:1:0.2%:74,434,1,0 0/0:.:509:508:1:0.2%:74,434,1,0 -Example1_ref 15343 . A G . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=7.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:1:0.2%:73,430,0,1 0/0:.:504:503:1:0.2%:73,430,0,1 -Example1_ref 15344 . T . PASS DP=936;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:78,390,0,0 0/0:.:468:468:0:0%:78,390,0,0 -Example1_ref 15345 . A . PASS DP=918;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:76,383,0,0 0/0:.:459:459:0:0%:76,383,0,0 -Example1_ref 15346 . G . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:74,381,0,0 0/0:.:455:455:0:0%:74,381,0,0 -Example1_ref 15347 . A . PASS DP=924;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:76,386,0,0 0/0:.:462:462:0:0%:76,386,0,0 -Example1_ref 15348 . CA C . PASS DP=916;SS=0;SSC=0;GPV=1E0;SPV=7.5027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:75,382,0,1 0/0:.:458:457:1:0.22%:75,382,0,1 -Example1_ref 15349 . A G . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=7.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:450:1:0.22%:75,375,0,1 0/0:.:452:450:1:0.22%:75,375,0,1 -Example1_ref 15350 . A . PASS DP=874;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:71,366,0,0 0/0:.:437:437:0:0%:71,366,0,0 -Example1_ref 15351 . A . PASS DP=872;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:71,365,0,0 0/0:.:436:436:0:0%:71,365,0,0 -Example1_ref 15352 . A . PASS DP=866;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:72,361,0,0 0/0:.:433:433:0:0%:72,361,0,0 -Example1_ref 15353 . A . PASS DP=868;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:71,363,0,0 0/0:.:434:434:0:0%:71,363,0,0 -Example1_ref 15354 . G T . PASS DP=864;SS=0;SSC=0;GPV=1E0;SPV=7.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:431:1:0.23%:68,363,1,0 0/0:.:432:431:1:0.23%:68,363,1,0 -Example1_ref 15355 . T C . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:415:1:0.24%:72,343,0,1 0/0:.:416:415:1:0.24%:72,343,0,1 -Example1_ref 15356 . A . PASS DP=840;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:73,347,0,0 0/0:.:420:420:0:0%:73,347,0,0 -Example1_ref 15357 . A . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:72,343,0,0 0/0:.:415:415:0:0%:72,343,0,0 -Example1_ref 15358 . G . PASS DP=822;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:68,343,0,0 0/0:.:411:411:0:0%:68,343,0,0 -Example1_ref 15359 . A T . PASS DP=824;SS=0;SSC=0;GPV=1E0;SPV=7.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:411:1:0.24%:68,343,1,0 0/0:.:412:411:1:0.24%:68,343,1,0 -Example1_ref 15360 . A . PASS DP=816;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:65,343,0,0 0/0:.:408:408:0:0%:65,343,0,0 -Example1_ref 15361 . A . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:65,337,0,0 0/0:.:402:402:0:0%:65,337,0,0 -Example1_ref 15362 . A . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:61,339,0,0 0/0:.:400:400:0:0%:61,339,0,0 -Example1_ref 15363 . A G . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=6.8796E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:403:2:0.49%:63,340,1,1 0/0:.:405:403:2:0.49%:63,340,1,1 -Example1_ref 15364 . C . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:397:0:0%:63,334,0,0 0/0:.:397:397:0:0%:63,334,0,0 -Example1_ref 15365 . A . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:63,333,0,0 0/0:.:396:396:0:0%:63,333,0,0 -Example1_ref 15366 . T A . PASS DP=800;SS=0;SSC=0;GPV=1E0;SPV=7.5031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:399:1:0.25%:64,335,0,1 0/0:.:400:399:1:0.25%:64,335,0,1 -Example1_ref 15367 . G . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:61,327,0,0 0/0:.:388:388:0:0%:61,327,0,0 -Example1_ref 15368 . T . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:62,328,0,0 0/0:.:390:390:0:0%:62,328,0,0 -Example1_ref 15369 . A . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:62,328,0,0 0/0:.:390:390:0:0%:62,328,0,0 -Example1_ref 15370 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:57,326,0,0 0/0:.:383:383:0:0%:57,326,0,0 -Example1_ref 15371 . T . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:61,325,0,0 0/0:.:387:386:0:0%:61,325,0,0 -Example1_ref 15372 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:60,323,0,0 0/0:.:383:383:0:0%:60,323,0,0 -Example1_ref 15373 . T C . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=7.5034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:60,305,0,1 0/0:.:366:365:1:0.27%:60,305,0,1 -Example1_ref 15374 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:60,287,0,0 0/0:.:347:347:0:0%:60,287,0,0 -Example1_ref 15375 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:0:0%:55,285,0,0 0/0:.:341:340:0:0%:55,285,0,0 -Example1_ref 15376 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:53,258,0,0 0/0:.:312:311:0:0%:53,258,0,0 -Example1_ref 15377 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:0:0%:51,251,0,0 0/0:.:303:302:0:0%:51,251,0,0 -Example1_ref 15378 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:0:0%:48,212,0,0 0/0:.:261:260:0:0%:48,212,0,0 -Example1_ref 15379 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:240:0:0%:45,195,0,0 0/0:.:242:240:0:0%:45,195,0,0 -Example1_ref 15380 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:217:0:0%:35,182,0,0 0/0:.:229:217:0:0%:35,182,0,0 -Example1_ref 15381 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:0:0%:35,176,0,0 0/0:.:212:211:0:0%:35,176,0,0 -Example1_ref 15382 . C CAAACA . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.5141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:88:1:1.12%:7,81,1,0 0/0:.:98:88:1:1.12%:7,81,1,0 diff --git a/test_data/example_1_output/vcf_files/Example1_file2.fastq.vcf b/test_data/example_1_output/vcf_files/Example1_file2.fastq.vcf deleted file mode 100644 index d34a65e..0000000 --- a/test_data/example_1_output/vcf_files/Example1_file2.fastq.vcf +++ /dev/null @@ -1,15383 +0,0 @@ -##fileformat=VCFv4.1 -##source=VarScan2 -##INFO= -##INFO= -##INFO= -##INFO= -##INFO= -##INFO= -##FILTER= -##FILTER= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -##FORMAT= -#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOR -Example1_ref 18 . C . PASS DP=7;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 19 . T . PASS DP=7;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 20 . A . PASS DP=7;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 21 . G . PASS DP=7;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:4:4:0:0%:4,0,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 22 . A . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 23 . A . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 24 . G GA . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=6.25E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:4:1:20%:4,0,0,1 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 25 . G . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 26 . T A . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=6.25E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:4:1:20%:4,0,0,1 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 27 . C . PASS DP=8;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:5:5:0:0%:4,1,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 28 . A AG . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=6E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:5:1:16.67%:5,0,0,1 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 29 . A . PASS DP=9;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:3:3:0:0%:2,1,0,0 -Example1_ref 30 . G . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:3:3:0:0%:2,1,0,0 -Example1_ref 31 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 32 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 33 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 34 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 35 . G . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 36 . G . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 37 . G . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 38 . A . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 39 . G . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 40 . C . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 41 . T . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:3:3:0:0%:1,2,0,0 -Example1_ref 42 . C . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 43 . T . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 44 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 45 . C . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 46 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 47 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 48 . T . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 49 . T . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 50 . T . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 51 . C . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 52 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 53 . A . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 54 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 55 . A . PASS DP=10;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:6:6:0:0%:5,1,0,0 0/0:.:4:4:0:0%:2,2,0,0 -Example1_ref 56 . A . PASS DP=11;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:7:7:0:0%:6,1,0,0 0/0:.:4:4:0:0%:1,3,0,0 -Example1_ref 57 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:5:5:0:0%:2,3,0,0 -Example1_ref 58 . G . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:5:5:0:0%:2,3,0,0 -Example1_ref 59 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:5:5:0:0%:2,3,0,0 -Example1_ref 60 . T . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:5:5:0:0%:2,3,0,0 -Example1_ref 61 . G . PASS DP=14;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:5:5:0:0%:2,3,0,0 -Example1_ref 62 . A . PASS DP=15;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 63 . G . PASS DP=15;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:9:9:0:0%:8,1,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 64 . C . PASS DP=16;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:9,1,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 65 . C . PASS DP=16;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:9,1,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 66 . T . PASS DP=16;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:9,1,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 67 . A . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:11,1,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 68 . T . PASS DP=18;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:11,1,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 69 . T . PASS DP=19;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:13:13:0:0%:11,2,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 70 . T . PASS DP=19;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:13:13:0:0%:11,2,0,0 0/0:.:6:6:0:0%:3,3,0,0 -Example1_ref 71 . G . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:7:7:0:0%:4,3,0,0 -Example1_ref 72 . A . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:7:7:0:0%:4,3,0,0 -Example1_ref 73 . T . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:7:7:0:0%:4,3,0,0 -Example1_ref 74 . A . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:7:7:0:0%:4,3,0,0 -Example1_ref 75 . C . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:12,2,0,0 0/0:.:9:9:0:0%:6,3,0,0 -Example1_ref 76 . A . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:13,2,0,0 0/0:.:9:9:0:0%:6,3,0,0 -Example1_ref 77 . T . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:17:0:0%:13,4,0,0 0/0:.:10:10:0:0%:6,4,0,0 -Example1_ref 78 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:10:10:0:0%:6,4,0,0 -Example1_ref 79 . T . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 80 . A . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 81 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 82 . T . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 83 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:10:10:0:0%:6,4,0,0 -Example1_ref 84 . C . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 85 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 86 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:10:10:0:0%:5,5,0,0 -Example1_ref 87 . G . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 88 . T . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 89 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 90 . G . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 91 . G . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 92 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:13,5,0,0 0/0:.:10:10:0:0%:6,4,0,0 -Example1_ref 93 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 94 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 95 . G . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 96 . A . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:10:10:0:0%:6,4,0,0 -Example1_ref 97 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:17:0:0%:11,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 98 . A . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 99 . A . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 100 . C . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 101 . A . PASS DP=29;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:12,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 102 . T . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 103 . A . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 104 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:13,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 105 . C . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 106 . A . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 107 . A . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:14,6,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 108 . A . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:21:0:0%:14,7,0,0 0/0:.:10:10:0:0%:6,4,0,0 -Example1_ref 109 . A . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:21:0:0%:13,8,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 110 . T . PASS DP=33;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:14,8,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 111 . C . PASS DP=35;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:16,8,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 112 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:23:0:0%:16,7,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 113 . G . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:23:0:0%:15,8,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 114 . C . PASS DP=35;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 115 . T . PASS DP=35;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 116 . G . PASS DP=35;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 117 . G . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:23:0:0%:15,8,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 118 . T . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:16,8,0,0 0/0:.:10:10:0:0%:6,4,0,0 -Example1_ref 119 . G . PASS DP=35;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:15,9,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 120 . G . PASS DP=37;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:26:26:0:0%:16,10,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 121 . A . PASS DP=33;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:13,9,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 122 . G . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:27:0:0%:17,10,0,0 0/0:.:11:11:0:0%:6,5,0,0 -Example1_ref 123 . C . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:30:0:0%:19,11,0,0 0/0:.:12:12:0:0%:7,5,0,0 -Example1_ref 124 . T . PASS DP=44;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:19,12,0,0 0/0:.:13:13:0:0%:8,5,0,0 -Example1_ref 125 . A . PASS DP=45;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:19,13,0,0 0/0:.:13:13:0:0%:8,5,0,0 -Example1_ref 126 . T . PASS DP=44;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:19,12,0,0 0/0:.:13:13:0:0%:8,5,0,0 -Example1_ref 127 . C . PASS DP=44;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:19,12,0,0 0/0:.:13:13:0:0%:8,5,0,0 -Example1_ref 128 . A . PASS DP=45;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:19,13,0,0 0/0:.:13:13:0:0%:8,5,0,0 -Example1_ref 129 . T A . PASS DP=50;SS=0;SSC=0;GPV=1E0;SPV=7E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:34:1:2.86%:20,14,0,1 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 130 . C . PASS DP=47;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:33:33:0:0%:19,14,0,0 0/0:.:14:14:0:0%:9,5,0,0 -Example1_ref 131 . C . PASS DP=49;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:35:0:0%:20,15,0,0 0/0:.:14:14:0:0%:9,5,0,0 -Example1_ref 132 . C . PASS DP=49;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 133 . T . PASS DP=50;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:35:0:0%:20,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 134 . G . PASS DP=49;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 135 . G . PASS DP=49;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 136 . A . PASS DP=51;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:36:36:0:0%:20,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 137 . C . PASS DP=49;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:34:34:0:0%:19,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 138 . A . PASS DP=50;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:35:35:0:0%:20,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 139 . G . PASS DP=53;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:38:38:0:0%:22,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 140 . A . PASS DP=54;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:23,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 141 . A . PASS DP=52;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:37:37:0:0%:22,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 142 . A . PASS DP=54;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:23,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 143 . A . PASS DP=53;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:38:38:0:0%:23,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 144 . A . PASS DP=54;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:23,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 145 . T . PASS DP=55;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:41:41:0:0%:25,16,0,0 0/0:.:14:14:0:0%:10,4,0,0 -Example1_ref 146 . A . PASS DP=55;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:40:40:0:0%:24,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 147 . C . PASS DP=56;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:41:41:0:0%:25,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 148 . T . PASS DP=56;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:41:41:0:0%:25,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 149 . G . PASS DP=54;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:39:39:0:0%:25,14,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 150 . T . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:42:42:0:0%:27,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 151 . C . PASS DP=58;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:43:43:0:0%:29,14,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 152 . T . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:43:43:0:0%:27,16,0,0 0/0:.:14:14:0:0%:10,4,0,0 -Example1_ref 153 . C . PASS DP=58;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:44:44:0:0%:30,14,0,0 0/0:.:14:14:0:0%:10,4,0,0 -Example1_ref 154 . T . PASS DP=59;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:44:44:0:0%:29,15,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 155 . A . PASS DP=61;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:15:15:0:0%:10,5,0,0 -Example1_ref 156 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:31,16,0,0 0/0:.:16:16:0:0%:11,5,0,0 -Example1_ref 157 . A . PASS DP=61;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:45:45:0:0%:30,15,0,0 0/0:.:16:16:0:0%:11,5,0,0 -Example1_ref 158 . T . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:16:16:0:0%:11,5,0,0 -Example1_ref 159 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:31,15,0,0 0/0:.:17:17:0:0%:11,6,0,0 -Example1_ref 160 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:17:17:0:0%:11,6,0,0 -Example1_ref 161 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:46:46:0:0%:30,16,0,0 0/0:.:17:17:0:0%:11,6,0,0 -Example1_ref 162 . C . PASS DP=67;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:17:17:0:0%:11,6,0,0 -Example1_ref 163 . T . PASS DP=66;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:49:49:0:0%:32,17,0,0 0/0:.:17:17:0:0%:11,6,0,0 -Example1_ref 164 . C . PASS DP=68;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:18:18:0:0%:12,6,0,0 -Example1_ref 165 . T . PASS DP=67;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:49:49:0:0%:32,17,0,0 0/0:.:18:18:0:0%:12,6,0,0 -Example1_ref 166 . T . PASS DP=67;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:17:17:0:0%:12,5,0,0 -Example1_ref 167 . G . PASS DP=65;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:48:48:0:0%:30,18,0,0 0/0:.:17:17:0:0%:12,5,0,0 -Example1_ref 168 . G . PASS DP=67;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:32,18,0,0 0/0:.:17:17:0:0%:11,6,0,0 -Example1_ref 169 . A . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:32,22,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 170 . C . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:33,20,0,0 0/0:.:22:22:0:0%:12,10,0,0 -Example1_ref 171 . C . PASS DP=71;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:31,20,0,0 0/0:.:20:20:0:0%:11,9,0,0 -Example1_ref 172 . G . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:34,21,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 173 . A . PASS DP=79;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:32,24,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 174 . C A . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=2.875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:34,23,0,0 0/0:.:23:22:1:4.35%:13,9,0,1 -Example1_ref 175 . A . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 176 . A . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 177 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 178 . A . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 179 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:36,29,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 180 . C . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 181 . C A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=7.3034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:64:1:1.54%:35,29,1,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 182 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 183 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 184 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 185 . G . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:36,29,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 186 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 187 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 188 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 189 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 190 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:36,29,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 191 . G . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 192 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 193 . G . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:34,31,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 194 . A . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:31,31,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 195 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:34,31,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 196 . A . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 197 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 198 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:33,31,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 199 . G . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:31,30,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 200 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 201 . C . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 202 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:34,31,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 203 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:35,30,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 204 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 205 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 206 . G . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:32,31,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 207 . C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 208 . T . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 209 . C . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:38,32,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 210 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:37,30,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 211 . T . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:38,31,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 212 . C . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:37,31,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 213 . T . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:39,30,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 214 . A . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 215 . T . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 216 . T . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 217 . T . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 218 . C . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 219 . T . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 220 . A . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:38,32,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 221 . T . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 222 . C . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:40,29,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 223 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:37,32,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 224 . C . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:39,31,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 225 . A . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:40,32,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 226 . T . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:41,31,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 227 . T . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 228 . C . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 229 . A . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 230 . T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 231 . T . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 232 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:45,33,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 233 . G . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 234 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 235 . T . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:45,34,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 236 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:45,34,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 237 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 238 . T . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:45,34,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 239 . G . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 240 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:45,33,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 241 . G . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:45,35,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 242 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:45,35,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 243 . A . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:47,35,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 244 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:46,35,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 245 . C . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:46,35,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 246 . A . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:47,36,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 247 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:45,35,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 248 . C . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:46,36,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 249 . A . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:45,37,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 250 . T . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:46,39,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 251 . G . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 252 . C . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:46,39,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 253 . A ACCTGT . PASS DP=107;SS=0;SSC=0;GPV=1E0;SPV=2.243E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:43,40,0,0 0/0:.:24:23:1:4.17%:13,10,1,0 -Example1_ref 254 . C . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:43,37,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 255 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:20:20:0:0%:13,7,0,0 -Example1_ref 256 . A . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:42,40,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 257 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:41,39,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 258 . G . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:41,39,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 259 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:41,38,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 260 . G . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:42,40,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 261 . C . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:42,39,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 262 . AG A . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=2.2857E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:41,40,0,0 0/0:.:24:23:1:4.17%:14,9,0,1 -Example1_ref 263 . G . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 264 . G . PASS DP=107;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:46,40,0,0 0/0:.:21:21:0:0%:12,9,0,0 -Example1_ref 265 . G . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:47,39,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 266 . T . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:45,37,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 267 . T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:45,36,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 268 . C . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:45,36,0,0 0/0:.:21:21:0:0%:14,7,0,0 -Example1_ref 269 . C . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 270 . T . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:48,38,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 271 . G . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:51,36,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 272 . G T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=6.4431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:88:2:2.22%:49,39,2,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 273 . T . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:53,38,0,0 0/0:.:24:24:0:0%:16,8,0,0 -Example1_ref 274 . G . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:51,37,0,0 0/0:.:24:24:0:0%:16,8,0,0 -Example1_ref 275 . T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:54,37,0,0 0/0:.:27:27:0:0%:18,9,0,0 -Example1_ref 276 . C . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:58,37,0,0 0/0:.:26:26:0:0%:19,7,0,0 -Example1_ref 277 . T . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:59,40,0,0 0/0:.:28:28:0:0%:19,9,0,0 -Example1_ref 278 . T . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:59,40,0,0 0/0:.:28:28:0:0%:19,9,0,0 -Example1_ref 279 . T C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=7.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:57,40,1,0 0/0:.:28:28:0:0%:19,9,0,0 -Example1_ref 280 . A . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:59,41,0,0 0/0:.:29:29:0:0%:19,10,0,0 -Example1_ref 281 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:59,38,0,0 0/0:.:29:29:0:0%:19,10,0,0 -Example1_ref 282 . T C . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=2.3622E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:30:29:1:3.33%:18,11,1,0 -Example1_ref 283 . G . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:63,40,0,0 0/0:.:33:33:0:0%:22,11,0,0 -Example1_ref 284 . T . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:66,43,0,0 0/0:.:32:32:0:0%:22,10,0,0 -Example1_ref 285 . C . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:63,38,0,0 0/0:.:32:32:0:0%:22,10,0,0 -Example1_ref 286 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:64,43,0,0 0/0:.:33:33:0:0%:22,11,0,0 -Example1_ref 287 . A . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:65,44,0,0 0/0:.:32:32:0:0%:22,10,0,0 -Example1_ref 288 . T . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:66,42,0,0 0/0:.:33:33:0:0%:22,11,0,0 -Example1_ref 289 . G . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:64,46,0,0 0/0:.:33:33:0:0%:22,11,0,0 -Example1_ref 290 . G . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:66,45,0,0 0/0:.:33:33:0:0%:23,10,0,0 -Example1_ref 291 . C . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:67,42,0,0 0/0:.:34:34:0:0%:23,11,0,0 -Example1_ref 292 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:69,44,0,0 0/0:.:33:33:0:0%:22,11,0,0 -Example1_ref 293 . T . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:34:34:0:0%:23,11,0,0 -Example1_ref 294 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:69,47,0,0 0/0:.:34:34:0:0%:23,11,0,0 -Example1_ref 295 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:36:36:0:0%:25,11,0,0 -Example1_ref 296 . G . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:36:36:0:0%:25,11,0,0 -Example1_ref 297 . C . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:35:35:0:0%:25,10,0,0 -Example1_ref 298 . C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:73,46,0,0 0/0:.:36:36:0:0%:25,11,0,0 -Example1_ref 299 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:75,49,0,0 0/0:.:36:36:0:0%:25,11,0,0 -Example1_ref 300 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:75,49,0,0 0/0:.:37:37:0:0%:26,11,0,0 -Example1_ref 301 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:74,46,0,0 0/0:.:36:36:0:0%:26,10,0,0 -Example1_ref 302 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:78,48,0,0 0/0:.:37:37:0:0%:26,11,0,0 -Example1_ref 303 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:78,48,0,0 0/0:.:36:36:0:0%:26,10,0,0 -Example1_ref 304 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:37:37:0:0%:26,11,0,0 -Example1_ref 305 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:0:0%:77,48,0,0 0/0:.:36:36:0:0%:26,10,0,0 -Example1_ref 306 . A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:36:36:0:0%:26,10,0,0 -Example1_ref 307 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:75,46,0,0 0/0:.:37:37:0:0%:26,11,0,0 -Example1_ref 308 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:78,47,0,0 0/0:.:36:36:0:0%:25,11,0,0 -Example1_ref 309 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:78,45,0,0 0/0:.:35:35:0:0%:25,10,0,0 -Example1_ref 310 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:80,41,0,0 0/0:.:40:40:0:0%:29,11,0,0 -Example1_ref 311 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:80,48,0,0 0/0:.:40:40:0:0%:29,11,0,0 -Example1_ref 312 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:77,49,0,0 0/0:.:40:40:0:0%:29,11,0,0 -Example1_ref 313 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:79,45,0,0 0/0:.:38:38:0:0%:29,9,0,0 -Example1_ref 314 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:38:38:0:0%:28,10,0,0 -Example1_ref 315 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 316 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 317 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 318 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 319 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 320 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 321 . C . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:78,48,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 322 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:40:40:0:0%:29,11,0,0 -Example1_ref 323 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:79,49,0,0 0/0:.:39:39:0:0%:28,11,0,0 -Example1_ref 324 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:38:38:0:0%:27,11,0,0 -Example1_ref 325 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:79,49,0,0 0/0:.:40:40:0:0%:29,11,0,0 -Example1_ref 326 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:40:40:0:0%:29,11,0,0 -Example1_ref 327 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:79,49,0,0 0/0:.:39:39:0:0%:29,10,0,0 -Example1_ref 328 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:42:42:0:0%:31,11,0,0 -Example1_ref 329 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:78,50,0,0 0/0:.:44:43:0:0%:32,11,0,0 -Example1_ref 330 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:81,49,0,0 0/0:.:43:43:0:0%:32,11,0,0 -Example1_ref 331 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:81,50,0,0 0/0:.:44:44:0:0%:32,12,0,0 -Example1_ref 332 . A T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=7.3714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:79,49,0,1 0/0:.:46:46:0:0%:33,13,0,0 -Example1_ref 333 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:80,51,0,0 0/0:.:46:46:0:0%:33,13,0,0 -Example1_ref 334 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:80,49,0,0 0/0:.:45:45:0:0%:32,13,0,0 -Example1_ref 335 . G T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=7.3684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:76,49,1,0 0/0:.:45:45:0:0%:32,13,0,0 -Example1_ref 336 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:45:45:0:0%:32,13,0,0 -Example1_ref 337 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:44:44:0:0%:30,14,0,0 -Example1_ref 338 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:80,51,0,0 0/0:.:45:45:0:0%:31,14,0,0 -Example1_ref 339 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:79,52,0,0 0/0:.:47:47:0:0%:32,15,0,0 -Example1_ref 340 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:84,51,0,0 0/0:.:47:47:0:0%:33,14,0,0 -Example1_ref 341 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:82,51,0,0 0/0:.:48:48:0:0%:33,15,0,0 -Example1_ref 342 . T A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=7.3481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:132:1:0.75%:83,49,1,0 0/0:.:48:48:0:0%:33,15,0,0 -Example1_ref 343 . C A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=2.6136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:130:0:0%:81,49,0,0 0/0:.:46:45:1:2.17%:31,14,0,1 -Example1_ref 344 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:134:0:0%:83,51,0,0 0/0:.:50:50:0:0%:34,16,0,0 -Example1_ref 345 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:133:0:0%:82,51,0,0 0/0:.:47:47:0:0%:31,16,0,0 -Example1_ref 346 . G GCTGTCTCT . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=7.4595E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:84,53,1,0 0/0:.:47:47:0:0%:31,16,0,0 -Example1_ref 347 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:84,52,0,0 0/0:.:48:48:0:0%:33,15,0,0 -Example1_ref 348 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:50:50:0:0%:34,16,0,0 -Example1_ref 349 . T TAAGAGACAG . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=7.4194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:87,50,0,1 0/0:.:48:48:0:0%:34,14,0,0 -Example1_ref 350 . G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:93,53,0,0 0/0:.:52:52:0:0%:37,15,0,0 -Example1_ref 351 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:52:52:0:0%:37,15,0,0 -Example1_ref 352 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:92,49,0,0 0/0:.:50:50:0:0%:37,13,0,0 -Example1_ref 353 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:91,52,0,0 0/0:.:51:51:0:0%:37,14,0,0 -Example1_ref 354 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:94,53,0,0 0/0:.:52:52:0:0%:37,15,0,0 -Example1_ref 355 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:96,51,0,0 0/0:.:54:54:0:0%:38,16,0,0 -Example1_ref 356 . T TAAGAG . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=7.3039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:95,53,0,1 0/0:.:55:55:0:0%:39,16,0,0 -Example1_ref 357 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:101,52,0,0 0/0:.:56:56:0:0%:40,16,0,0 -Example1_ref 358 . C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:100,53,0,0 0/0:.:56:56:0:0%:40,16,0,0 -Example1_ref 359 . AT A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=4.5306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:1:0.66%:102,48,0,1 0/0:.:53:52:1:1.89%:40,12,0,1 -Example1_ref 360 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:0:0%:101,49,0,0 0/0:.:52:51:0:0%:39,12,0,0 -Example1_ref 361 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:100,49,0,0 0/0:.:50:50:0:0%:37,13,0,0 -Example1_ref 362 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:100,47,0,0 0/0:.:52:52:0:0%:40,12,0,0 -Example1_ref 363 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:102,50,0,0 0/0:.:53:53:0:0%:42,11,0,0 -Example1_ref 364 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:104,51,0,0 0/0:.:56:56:0:0%:43,13,0,0 -Example1_ref 365 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:103,51,0,0 0/0:.:54:54:0:0%:42,12,0,0 -Example1_ref 366 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:98,52,0,0 0/0:.:55:55:0:0%:42,13,0,0 -Example1_ref 367 . G . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:101,52,0,0 0/0:.:56:56:0:0%:43,13,0,0 -Example1_ref 368 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:102,54,0,0 0/0:.:58:58:0:0%:42,16,0,0 -Example1_ref 369 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:101,55,0,0 0/0:.:58:58:0:0%:42,16,0,0 -Example1_ref 370 . A G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=7.2986E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:99,54,0,1 0/0:.:57:57:0:0%:41,16,0,0 -Example1_ref 371 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:105,55,0,0 0/0:.:61:61:0:0%:45,16,0,0 -Example1_ref 372 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:105,56,0,0 0/0:.:58:58:0:0%:43,15,0,0 -Example1_ref 373 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:109,53,0,0 0/0:.:62:62:0:0%:45,17,0,0 -Example1_ref 374 . C . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:109,55,0,0 0/0:.:59:59:0:0%:42,17,0,0 -Example1_ref 375 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:109,57,0,0 0/0:.:62:62:0:0%:45,17,0,0 -Example1_ref 376 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:109,57,0,0 0/0:.:61:61:0:0%:44,17,0,0 -Example1_ref 377 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:110,58,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 378 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:108,59,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 379 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:107,60,0,0 0/0:.:62:62:0:0%:45,17,0,0 -Example1_ref 380 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:106,66,0,0 0/0:.:64:64:0:0%:45,19,0,0 -Example1_ref 381 . G T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=7.3554E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:107,70,1,0 0/0:.:64:64:0:0%:43,21,0,0 -Example1_ref 382 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:107,72,0,0 0/0:.:66:66:0:0%:43,23,0,0 -Example1_ref 383 . C T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.375E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:108,68,1,0 0/0:.:63:63:0:0%:43,20,0,0 -Example1_ref 384 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:109,73,0,0 0/0:.:63:63:0:0%:40,23,0,0 -Example1_ref 385 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:110,72,0,0 0/0:.:64:64:0:0%:43,21,0,0 -Example1_ref 386 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:108,72,0,0 0/0:.:65:65:0:0%:44,21,0,0 -Example1_ref 387 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:107,73,0,0 0/0:.:67:67:0:0%:44,23,0,0 -Example1_ref 388 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:112,74,0,0 0/0:.:66:66:0:0%:43,23,0,0 -Example1_ref 389 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:116,74,0,0 0/0:.:66:66:0:0%:44,22,0,0 -Example1_ref 390 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:113,77,0,0 0/0:.:64:64:0:0%:41,23,0,0 -Example1_ref 391 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:112,77,0,0 0/0:.:65:65:0:0%:42,23,0,0 -Example1_ref 392 . G . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:114,78,0,0 0/0:.:65:65:0:0%:42,23,0,0 -Example1_ref 393 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:67:67:0:0%:44,23,0,0 -Example1_ref 394 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:108,79,0,0 0/0:.:64:64:0:0%:41,23,0,0 -Example1_ref 395 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:67:67:0:0%:43,24,0,0 -Example1_ref 396 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:109,79,0,0 0/0:.:68:68:0:0%:45,23,0,0 -Example1_ref 397 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:112,79,0,0 0/0:.:66:66:0:0%:43,23,0,0 -Example1_ref 398 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:109,78,0,0 0/0:.:65:65:0:0%:43,22,0,0 -Example1_ref 399 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:105,75,0,0 0/0:.:66:66:0:0%:45,21,0,0 -Example1_ref 400 . T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:108,83,0,0 0/0:.:68:68:0:0%:45,23,0,0 -Example1_ref 401 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:110,83,0,0 0/0:.:69:69:0:0%:45,24,0,0 -Example1_ref 402 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:112,84,0,0 0/0:.:69:69:0:0%:45,24,0,0 -Example1_ref 403 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:111,83,0,0 0/0:.:72:72:0:0%:48,24,0,0 -Example1_ref 404 . G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:113,85,0,0 0/0:.:71:71:0:0%:47,24,0,0 -Example1_ref 405 . T C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.2794E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:115,82,1,0 0/0:.:74:74:0:0%:50,24,0,0 -Example1_ref 406 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:116,86,0,0 0/0:.:74:74:0:0%:50,24,0,0 -Example1_ref 407 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:116,86,0,0 0/0:.:73:73:0:0%:49,24,0,0 -Example1_ref 408 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:118,86,0,0 0/0:.:73:73:0:0%:49,24,0,0 -Example1_ref 409 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:116,87,0,0 0/0:.:71:71:0:0%:48,23,0,0 -Example1_ref 410 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:116,87,0,0 0/0:.:74:74:0:0%:50,24,0,0 -Example1_ref 411 . C . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:118,79,0,0 0/0:.:76:76:0:0%:52,24,0,0 -Example1_ref 412 . G . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:114,87,0,0 0/0:.:74:74:0:0%:50,24,0,0 -Example1_ref 413 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:120,88,0,0 0/0:.:73:73:0:0%:50,23,0,0 -Example1_ref 414 . G . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:117,87,0,0 0/0:.:73:73:0:0%:50,23,0,0 -Example1_ref 415 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:119,84,0,0 0/0:.:74:74:0:0%:50,24,0,0 -Example1_ref 416 . G . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:120,87,0,0 0/0:.:74:74:0:0%:49,25,0,0 -Example1_ref 417 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:119,86,0,0 0/0:.:76:76:0:0%:51,25,0,0 -Example1_ref 418 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:121,88,0,0 0/0:.:74:74:0:0%:49,25,0,0 -Example1_ref 419 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:122,90,0,0 0/0:.:76:76:0:0%:50,26,0,0 -Example1_ref 420 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:123,91,0,0 0/0:.:75:75:0:0%:51,24,0,0 -Example1_ref 421 . G GAT . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=2.6207E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:124,90,0,0 0/0:.:76:75:1:1.32%:48,27,1,0 -Example1_ref 422 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:133,90,0,0 0/0:.:75:75:0:0%:48,27,0,0 -Example1_ref 423 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:133,91,0,0 0/0:.:77:77:0:0%:50,27,0,0 -Example1_ref 424 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:135,95,0,0 0/0:.:79:79:0:0%:52,27,0,0 -Example1_ref 425 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:136,92,0,0 0/0:.:77:77:0:0%:50,27,0,0 -Example1_ref 426 . A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:140,98,0,0 0/0:.:79:79:0:0%:52,27,0,0 -Example1_ref 427 . T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:79:79:0:0%:53,26,0,0 -Example1_ref 428 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:137,97,0,0 0/0:.:76:76:0:0%:50,26,0,0 -Example1_ref 429 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:137,97,0,0 0/0:.:79:79:0:0%:53,26,0,0 -Example1_ref 430 . G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:137,97,0,0 0/0:.:79:79:0:0%:53,26,0,0 -Example1_ref 431 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:139,99,0,0 0/0:.:80:80:0:0%:52,28,0,0 -Example1_ref 432 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:140,99,0,0 0/0:.:81:81:0:0%:52,29,0,0 -Example1_ref 433 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:139,95,0,0 0/0:.:80:80:0:0%:51,29,0,0 -Example1_ref 434 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:141,99,0,0 0/0:.:78:78:0:0%:50,28,0,0 -Example1_ref 435 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:142,96,0,0 0/0:.:80:80:0:0%:51,29,0,0 -Example1_ref 436 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:142,98,0,0 0/0:.:81:81:0:0%:52,29,0,0 -Example1_ref 437 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:141,99,0,0 0/0:.:81:81:0:0%:52,29,0,0 -Example1_ref 438 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:141,96,0,0 0/0:.:79:79:0:0%:52,27,0,0 -Example1_ref 439 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:141,96,0,0 0/0:.:82:82:0:0%:54,28,0,0 -Example1_ref 440 . G A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=2.6183E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:83:82:1:1.2%:54,28,0,1 -Example1_ref 441 . A T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=2.5962E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:136,95,0,0 0/0:.:81:80:1:1.23%:51,29,1,0 -Example1_ref 442 . T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:79:79:0:0%:52,27,0,0 -Example1_ref 443 . T C . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=7.5399E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:139,96,1,0 0/0:.:77:77:0:0%:48,29,0,0 -Example1_ref 444 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:139,93,0,0 0/0:.:80:80:0:0%:52,28,0,0 -Example1_ref 445 . G . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:143,97,0,0 0/0:.:81:81:0:0%:52,29,0,0 -Example1_ref 446 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:138,98,0,0 0/0:.:80:80:0:0%:51,29,0,0 -Example1_ref 447 . T TA . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=7.4921E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:138,97,1,0 0/0:.:79:79:0:0%:50,29,0,0 -Example1_ref 448 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:143,98,0,0 0/0:.:80:80:0:0%:51,29,0,0 -Example1_ref 449 . T . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:140,98,0,0 0/0:.:79:79:0:0%:51,28,0,0 -Example1_ref 450 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:144,95,0,0 0/0:.:80:80:0:0%:51,29,0,0 -Example1_ref 451 . T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:141,98,0,0 0/0:.:82:82:0:0%:53,29,0,0 -Example1_ref 452 . G . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:138,100,0,0 0/0:.:79:79:0:0%:50,29,0,0 -Example1_ref 453 . G T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=7.5157E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:138,100,1,0 0/0:.:79:79:0:0%:50,29,0,0 -Example1_ref 454 . A T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=7.4766E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:138,101,1,0 0/0:.:81:81:0:0%:51,30,0,0 -Example1_ref 455 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:139,102,0,0 0/0:.:83:83:0:0%:52,31,0,0 -Example1_ref 456 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:140,102,0,0 0/0:.:82:82:0:0%:51,31,0,0 -Example1_ref 457 . T A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.4383E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:142,98,0,1 0/0:.:83:83:0:0%:53,30,0,0 -Example1_ref 458 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:137,98,0,0 0/0:.:79:79:0:0%:49,30,0,0 -Example1_ref 459 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:140,98,0,0 0/0:.:80:80:0:0%:50,30,0,0 -Example1_ref 460 . C A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=7.4121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:135,96,0,1 0/0:.:81:81:0:0%:51,30,0,0 -Example1_ref 461 . C A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.5166E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:132,94,0,1 0/0:.:75:75:0:0%:46,29,0,0 -Example1_ref 462 . TG T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=7.4359E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:231:1:0.43%:133,98,0,1 0/0:.:80:80:0:0%:49,31,0,0 -Example1_ref 463 . G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:132,99,0,0 0/0:.:82:82:0:0%:52,30,0,0 -Example1_ref 464 . G T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.4038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:130,100,1,0 0/0:.:81:81:0:0%:50,31,0,0 -Example1_ref 465 . AT A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.4194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:126,103,1,0 0/0:.:80:80:0:0%:49,31,0,0 -Example1_ref 466 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:128,100,0,0 0/0:.:80:80:0:0%:51,29,0,0 -Example1_ref 467 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:122,97,0,0 0/0:.:82:82:0:0%:51,31,0,0 -Example1_ref 468 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:129,99,0,0 0/0:.:83:83:0:0%:51,32,0,0 -Example1_ref 469 . T . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:129,101,0,0 0/0:.:81:81:0:0%:50,31,0,0 -Example1_ref 470 . G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:129,101,0,0 0/0:.:79:79:0:0%:48,31,0,0 -Example1_ref 471 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:128,100,0,0 0/0:.:81:81:0:0%:51,30,0,0 -Example1_ref 472 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:126,98,0,0 0/0:.:76:76:0:0%:47,29,0,0 -Example1_ref 473 . C T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=7.4411E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:123,97,1,0 0/0:.:76:76:0:0%:47,29,0,0 -Example1_ref 474 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:124,103,0,0 0/0:.:79:79:0:0%:47,32,0,0 -Example1_ref 475 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:126,100,0,0 0/0:.:76:76:0:0%:45,31,0,0 -Example1_ref 476 . G . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:118,103,0,0 0/0:.:78:78:0:0%:46,32,0,0 -Example1_ref 477 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:123,103,0,0 0/0:.:79:79:0:0%:47,32,0,0 -Example1_ref 478 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:123,104,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 479 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:123,102,0,0 0/0:.:78:78:0:0%:47,31,0,0 -Example1_ref 480 . C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:126,97,0,0 0/0:.:78:78:0:0%:47,31,0,0 -Example1_ref 481 . T G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.4497E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:122,99,0,1 0/0:.:76:76:0:0%:46,30,0,0 -Example1_ref 482 . A AC . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=2.6316E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:0:0%:123,101,0,0 0/0:.:80:79:1:1.25%:47,32,1,0 -Example1_ref 483 . T . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:126,102,0,0 0/0:.:79:79:0:0%:47,32,0,0 -Example1_ref 484 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:122,106,0,0 0/0:.:78:78:0:0%:46,32,0,0 -Example1_ref 485 . T . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:123,107,0,0 0/0:.:77:77:0:0%:46,31,0,0 -Example1_ref 486 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:120,105,0,0 0/0:.:77:77:0:0%:46,31,0,0 -Example1_ref 487 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:115,104,0,0 0/0:.:77:77:0:0%:45,32,0,0 -Example1_ref 488 . C . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:76:76:0:0%:44,32,0,0 -Example1_ref 489 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:117,104,0,0 0/0:.:77:77:0:0%:45,32,0,0 -Example1_ref 490 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:116,104,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 491 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 492 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:80:80:0:0%:46,34,0,0 -Example1_ref 493 . C . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:116,99,0,0 0/0:.:78:78:0:0%:45,33,0,0 -Example1_ref 494 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:112,104,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 495 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:79:79:0:0%:45,34,0,0 -Example1_ref 496 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:113,107,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 497 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:113,106,0,0 0/0:.:79:79:0:0%:46,33,0,0 -Example1_ref 498 . G . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:110,103,0,0 0/0:.:80:80:0:0%:46,34,0,0 -Example1_ref 499 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:114,105,0,0 0/0:.:77:77:0:0%:44,33,0,0 -Example1_ref 500 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:112,103,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 501 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:115,106,0,0 0/0:.:75:75:0:0%:41,34,0,0 -Example1_ref 502 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:115,103,0,0 0/0:.:74:74:0:0%:41,33,0,0 -Example1_ref 503 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:79:79:0:0%:45,34,0,0 -Example1_ref 504 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:112,103,0,0 0/0:.:79:79:0:0%:45,34,0,0 -Example1_ref 505 . T . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 506 . T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:113,99,0,0 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 507 . C . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:110,96,0,0 0/0:.:75:75:0:0%:42,33,0,0 -Example1_ref 508 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:110,106,0,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 509 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:114,107,0,0 0/0:.:77:77:0:0%:42,35,0,0 -Example1_ref 510 . C . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:114,105,0,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 511 . A C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.3737E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:218:1:0.46%:113,105,1,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 512 . A C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.4161E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:113,107,1,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 513 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:118,105,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 514 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:116,107,0,0 0/0:.:75:75:0:0%:42,33,0,0 -Example1_ref 515 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:113,108,0,0 0/0:.:73:73:0:0%:40,33,0,0 -Example1_ref 516 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:112,107,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 517 . A G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=4.5825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:110,107,0,1 0/0:.:78:77:1:1.28%:41,36,1,0 -Example1_ref 518 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:113,108,0,0 0/0:.:75:75:0:0%:39,36,0,0 -Example1_ref 519 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:114,107,0,0 0/0:.:79:79:0:0%:41,38,0,0 -Example1_ref 520 . C A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=5.4785E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:215:2:0.92%:109,106,0,2 0/0:.:76:76:0:0%:39,37,0,0 -Example1_ref 521 . C A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=4.4578E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:111,107,0,1 0/0:.:75:74:1:1.33%:38,36,0,1 -Example1_ref 522 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:114,103,0,0 0/0:.:75:75:0:0%:39,36,0,0 -Example1_ref 523 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:116,107,0,0 0/0:.:75:75:0:0%:39,36,0,0 -Example1_ref 524 . G T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=7.4751E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:115,109,1,0 0/0:.:76:76:0:0%:38,38,0,0 -Example1_ref 525 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:117,111,0,0 0/0:.:77:77:0:0%:39,38,0,0 -Example1_ref 526 . T A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.5333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:115,110,1,0 0/0:.:74:74:0:0%:38,36,0,0 -Example1_ref 527 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:0:0%:110,107,0,0 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 528 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:111,112,0,0 0/0:.:74:74:0:0%:38,36,0,0 -Example1_ref 529 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:111,106,0,0 0/0:.:71:71:0:0%:38,33,0,0 -Example1_ref 530 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:108,116,0,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 531 . C A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.4747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:106,115,0,1 0/0:.:75:75:0:0%:40,35,0,0 -Example1_ref 532 . G GT . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.4227E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:215:1:0.46%:100,115,0,1 0/0:.:75:75:0:0%:38,37,0,0 -Example1_ref 533 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:102,116,0,0 0/0:.:72:72:0:0%:37,35,0,0 -Example1_ref 534 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:102,110,0,0 0/0:.:73:73:0:0%:38,35,0,0 -Example1_ref 535 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:102,118,0,0 0/0:.:72:72:0:0%:39,33,0,0 -Example1_ref 536 . G . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:101,115,0,0 0/0:.:75:75:0:0%:39,36,0,0 -Example1_ref 537 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:101,118,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 538 . G T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=2.4828E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:97,121,0,0 0/0:.:72:71:1:1.39%:36,35,1,0 -Example1_ref 539 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:104,118,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 540 . A G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5352E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:97,116,0,1 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 541 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:98,118,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 542 . C A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:96,116,0,1 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 543 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:97,116,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 544 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:96,122,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 545 . T . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:89,121,0,0 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 546 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:90,119,0,0 0/0:.:69:69:0:0%:35,34,0,0 -Example1_ref 547 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 548 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:96,120,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 549 . G . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:98,123,0,0 0/0:.:78:78:0:0%:40,38,0,0 -Example1_ref 550 . T G . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=7.4419E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:100,123,0,1 0/0:.:77:77:0:0%:41,36,0,0 -Example1_ref 551 . T . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:94,120,0,0 0/0:.:79:79:0:0%:41,38,0,0 -Example1_ref 552 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:92,124,0,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 553 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:95,120,0,0 0/0:.:78:78:0:0%:38,40,0,0 -Example1_ref 554 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:91,119,0,0 0/0:.:78:77:0:0%:37,40,0,0 -Example1_ref 555 . G A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=4.6017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:90,120,1,0 0/0:.:78:75:1:1.32%:37,38,0,1 -Example1_ref 556 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:94,116,0,0 0/0:.:78:78:0:0%:39,39,0,0 -Example1_ref 557 . G . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:94,119,0,0 0/0:.:76:76:0:0%:37,39,0,0 -Example1_ref 558 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:95,114,0,0 0/0:.:77:77:0:0%:41,36,0,0 -Example1_ref 559 . T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:98,118,0,0 0/0:.:75:75:0:0%:40,35,0,0 -Example1_ref 560 . AT A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=4.6661E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:107,120,1,0 0/0:.:84:83:1:1.19%:46,37,1,0 -Example1_ref 561 . T TC . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.3148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:115,121,1,0 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 562 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:116,122,0,0 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 563 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:117,123,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 564 . T . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:119,127,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 565 . A AACTGTCTCTT . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.2222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:117,129,1,0 0/0:.:95:95:0:0%:52,43,0,0 -Example1_ref 566 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:0:0%:119,133,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 567 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:121,132,0,0 0/0:.:99:99:0:0%:55,44,0,0 -Example1_ref 568 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:120,131,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 569 . C . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:0:0%:117,129,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 570 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:117,118,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 571 . G C . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=7.0882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:240:1:0.41%:121,119,1,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 572 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:118,125,0,0 0/0:.:96:96:0:0%:53,43,0,0 -Example1_ref 573 . T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:0:0%:120,120,0,0 0/0:.:96:96:0:0%:53,43,0,0 -Example1_ref 574 . C G . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=8.3225E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:120,118,0,0 0/0:.:97:95:2:2.06%:54,41,0,2 -Example1_ref 575 . T C . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=7.0968E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:121,120,0,1 0/0:.:99:99:0:0%:55,44,0,0 -Example1_ref 576 . G C . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=7.1471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:115,122,1,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 577 . G T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1.954E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:115,126,1,0 0/0:.:96:94:2:2.08%:53,41,0,2 -Example1_ref 578 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:109,129,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 579 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:114,131,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 580 . A AG . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.1471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:1:0.41%:111,131,0,1 0/0:.:97:97:0:0%:51,46,0,0 -Example1_ref 581 . G GC . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=4.9564E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:118,129,1,0 0/0:.:101:100:1:0.99%:54,46,1,0 -Example1_ref 582 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 583 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:115,126,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 584 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:119,128,0,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 585 . T G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.0977E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:119,127,0,1 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 586 . A T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=2.8736E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:119,129,0,0 0/0:.:100:99:1:1%:52,47,0,1 -Example1_ref 587 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:118,130,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 588 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:119,131,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 589 . C . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:119,126,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 590 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:119,127,0,0 0/0:.:101:100:0:0%:50,50,0,0 -Example1_ref 591 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:118,125,0,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 592 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:118,129,0,0 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 593 . G . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:115,127,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 594 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:117,123,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 595 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 596 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:117,128,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 597 . T . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:117,125,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 598 . C . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:116,128,0,0 0/0:.:101:101:0:0%:51,50,0,0 -Example1_ref 599 . A ACTCTGT . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=7.094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:112,136,1,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 600 . C A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=4.8439E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:114,130,1,0 0/0:.:96:95:1:1.04%:48,47,0,1 -Example1_ref 601 . T C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.1137E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:243:1:0.41%:110,133,1,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 602 . A T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.0882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:109,131,1,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 603 . G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:109,131,0,0 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 604 . C CCT . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=7.1217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:112,127,1,0 0/0:.:97:97:0:0%:48,49,0,0 -Example1_ref 605 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:109,131,0,0 0/0:.:99:99:0:0%:47,52,0,0 -Example1_ref 606 . T . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:114,120,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 607 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:113,127,0,0 0/0:.:96:96:0:0%:48,48,0,0 -Example1_ref 608 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:112,126,0,0 0/0:.:94:94:0:0%:45,49,0,0 -Example1_ref 609 . C . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:110,127,0,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 610 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:108,129,0,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 611 . G . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:110,128,0,0 0/0:.:101:101:0:0%:49,52,0,0 -Example1_ref 612 . G T . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=7.0642E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:101,129,1,0 0/0:.:96:96:0:0%:46,50,0,0 -Example1_ref 613 . G . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:102,131,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 614 . T A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=2.994E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:0:0%:103,131,0,0 0/0:.:100:99:1:1%:50,49,0,1 -Example1_ref 615 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:103,129,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 616 . A . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:100,129,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 617 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:100,133,0,0 0/0:.:103:103:0:0%:49,54,0,0 -Example1_ref 618 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:105,132,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 619 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:107,130,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 620 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:105,130,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 621 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:105,128,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 622 . A C . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=5.1186E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:105,131,0,1 0/0:.:102:101:1:0.98%:50,51,1,0 -Example1_ref 623 . G T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=6.9733E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:106,128,0,1 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 624 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:105,130,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 625 . CT C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=4.9663E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:230:2:0.86%:106,124,1,1 0/0:.:97:97:0:0%:49,48,0,0 -Example1_ref 626 . T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:106,130,0,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 627 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:107,130,0,0 0/0:.:95:95:0:0%:49,46,0,0 -Example1_ref 628 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:106,130,0,0 0/0:.:98:98:0:0%:49,49,0,0 -Example1_ref 629 . T . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:104,132,0,0 0/0:.:97:97:0:0%:48,49,0,0 -Example1_ref 630 . T A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:107,131,0,1 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 631 . C T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=2.9412E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:107,133,0,0 0/0:.:100:99:1:1%:50,49,0,1 -Example1_ref 632 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:109,139,0,0 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 633 . C . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:106,132,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 634 . T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:107,135,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 635 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:103,134,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 636 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:106,140,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 637 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:99,141,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 638 . T A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.0588E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:100,139,0,1 0/0:.:100:100:0:0%:49,51,0,0 -Example1_ref 639 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:101,139,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 640 . G . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:102,138,0,0 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 641 . G T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=2.9714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:104,142,0,0 0/0:.:104:103:1:0.96%:49,54,1,0 -Example1_ref 642 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:103,138,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 643 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:99,138,0,0 0/0:.:105:105:0:0%:51,54,0,0 -Example1_ref 644 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:101,137,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 645 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:104,136,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 646 . T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:102,133,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 647 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:103,139,0,0 0/0:.:104:104:0:0%:53,51,0,0 -Example1_ref 648 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:100,141,0,0 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 649 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:101,143,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 650 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:102,144,0,0 0/0:.:108:108:0:0%:53,55,0,0 -Example1_ref 651 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:101,141,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 652 . G T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=6.9774E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:102,144,1,0 0/0:.:107:107:0:0%:52,55,0,0 -Example1_ref 653 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:101,139,0,0 0/0:.:102:102:0:0%:52,50,0,0 -Example1_ref 654 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:102,143,0,0 0/0:.:105:105:0:0%:51,54,0,0 -Example1_ref 655 . A . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:105,141,0,0 0/0:.:113:113:0:0%:58,55,0,0 -Example1_ref 656 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:105,142,0,0 0/0:.:113:113:0:0%:58,55,0,0 -Example1_ref 657 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:108,144,0,0 0/0:.:112:112:0:0%:59,53,0,0 -Example1_ref 658 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:107,144,0,0 0/0:.:109:109:0:0%:58,51,0,0 -Example1_ref 659 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:110,144,0,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 660 . G . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:108,144,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 661 . A C . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=6.8767E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:110,140,0,1 0/0:.:114:114:0:0%:60,54,0,0 -Example1_ref 662 . A T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=6.8478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:106,145,1,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 663 . C . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:107,144,0,0 0/0:.:116:116:0:0%:63,53,0,0 -Example1_ref 664 . A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:108,143,0,0 0/0:.:112:112:0:0%:61,51,0,0 -Example1_ref 665 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:114,145,0,0 0/0:.:119:119:0:0%:66,53,0,0 -Example1_ref 666 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:0:0%:114,144,0,0 0/0:.:119:119:0:0%:67,52,0,0 -Example1_ref 667 . G . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:0:0%:111,146,0,0 0/0:.:121:120:0:0%:66,54,0,0 -Example1_ref 668 . C . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:0:0%:115,144,0,0 0/0:.:121:120:0:0%:66,54,0,0 -Example1_ref 669 . A . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:114,149,0,0 0/0:.:120:120:0:0%:66,54,0,0 -Example1_ref 670 . G . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:113,149,0,0 0/0:.:121:121:0:0%:66,55,0,0 -Example1_ref 671 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:111,145,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 672 . C T . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=3.0831E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:112,146,0,0 0/0:.:115:114:1:0.87%:61,53,1,0 -Example1_ref 673 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:111,149,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 674 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:112,143,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 675 . G . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:113,142,0,0 0/0:.:120:120:0:0%:64,56,0,0 -Example1_ref 676 . G T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=3.2086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:110,144,0,0 0/0:.:120:119:1:0.83%:64,55,1,0 -Example1_ref 677 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:113,146,0,0 0/0:.:119:119:0:0%:62,57,0,0 -Example1_ref 678 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:115,146,0,0 0/0:.:121:121:0:0%:63,58,0,0 -Example1_ref 679 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:115,141,0,0 0/0:.:122:122:0:0%:66,56,0,0 -Example1_ref 680 . G . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:116,147,0,0 0/0:.:120:120:0:0%:64,56,0,0 -Example1_ref 681 . T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:118,148,0,0 0/0:.:124:124:0:0%:68,56,0,0 -Example1_ref 682 . G . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:119,148,0,0 0/0:.:124:124:0:0%:67,57,0,0 -Example1_ref 683 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:122,149,0,0 0/0:.:125:125:0:0%:68,57,0,0 -Example1_ref 684 . T . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:120,144,0,0 0/0:.:123:123:0:0%:68,55,0,0 -Example1_ref 685 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:118,144,0,0 0/0:.:120:120:0:0%:65,55,0,0 -Example1_ref 686 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:117,145,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 687 . G . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:116,148,0,0 0/0:.:121:121:0:0%:66,55,0,0 -Example1_ref 688 . C A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=3.1414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:118,144,0,0 0/0:.:120:119:1:0.83%:64,55,1,0 -Example1_ref 689 . G . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:120,145,0,0 0/0:.:124:124:0:0%:67,57,0,0 -Example1_ref 690 . G T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=3.1714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:118,149,0,0 0/0:.:124:123:1:0.81%:63,60,1,0 -Example1_ref 691 . C A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=6.7959E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:262:1:0.38%:123,139,0,1 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 692 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:124,147,0,0 0/0:.:123:123:0:0%:63,60,0,0 -Example1_ref 693 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:126,150,0,0 0/0:.:127:127:0:0%:65,62,0,0 -Example1_ref 694 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:127,146,0,0 0/0:.:127:127:0:0%:64,63,0,0 -Example1_ref 695 . A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:125,152,0,0 0/0:.:128:128:0:0%:65,63,0,0 -Example1_ref 696 . C . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:134,151,0,0 0/0:.:128:128:0:0%:65,63,0,0 -Example1_ref 697 . A C . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=6.9212E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:280:1:0.36%:129,151,1,0 0/0:.:125:125:0:0%:64,61,0,0 -Example1_ref 698 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:140,151,0,0 0/0:.:125:125:0:0%:63,62,0,0 -Example1_ref 699 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:141,149,0,0 0/0:.:126:126:0:0%:65,61,0,0 -Example1_ref 700 . G T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=6.9231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:140,147,1,0 0/0:.:128:128:0:0%:65,63,0,0 -Example1_ref 701 . G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:139,151,0,0 0/0:.:123:123:0:0%:63,60,0,0 -Example1_ref 702 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:140,151,0,0 0/0:.:127:127:0:0%:64,63,0,0 -Example1_ref 703 . T C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=3.0288E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:137,153,0,0 0/0:.:126:125:1:0.79%:62,63,1,0 -Example1_ref 704 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:140,154,0,0 0/0:.:126:126:0:0%:66,60,0,0 -Example1_ref 705 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:145,152,0,0 0/0:.:130:130:0:0%:68,62,0,0 -Example1_ref 706 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:145,153,0,0 0/0:.:130:130:0:0%:67,63,0,0 -Example1_ref 707 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:137,153,0,0 0/0:.:122:122:0:0%:64,58,0,0 -Example1_ref 708 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:135,152,0,0 0/0:.:121:121:0:0%:63,58,0,0 -Example1_ref 709 . T . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:138,150,0,0 0/0:.:119:119:0:0%:61,58,0,0 -Example1_ref 710 . G . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:0:0%:135,150,0,0 0/0:.:121:121:0:0%:65,56,0,0 -Example1_ref 711 . G . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:143,143,0,0 0/0:.:123:123:0:0%:67,56,0,0 -Example1_ref 712 . G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:141,151,0,0 0/0:.:121:121:0:0%:63,58,0,0 -Example1_ref 713 . T G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=7.0433E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:142,150,1,0 0/0:.:123:123:0:0%:66,57,0,0 -Example1_ref 714 . C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:141,146,0,0 0/0:.:117:117:0:0%:63,54,0,0 -Example1_ref 715 . A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:144,147,0,0 0/0:.:124:124:0:0%:66,58,0,0 -Example1_ref 716 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:146,145,0,0 0/0:.:121:121:0:0%:64,57,0,0 -Example1_ref 717 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:149,144,0,0 0/0:.:123:123:0:0%:66,57,0,0 -Example1_ref 718 . C . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:148,148,0,0 0/0:.:125:125:0:0%:67,58,0,0 -Example1_ref 719 . A G . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=6.9668E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:1:0.34%:146,147,0,1 0/0:.:128:128:0:0%:68,60,0,0 -Example1_ref 720 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:146,147,0,0 0/0:.:125:125:0:0%:67,58,0,0 -Example1_ref 721 . G . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:142,144,0,0 0/0:.:119:119:0:0%:62,57,0,0 -Example1_ref 722 . C A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=7.0218E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:147,142,0,1 0/0:.:123:123:0:0%:65,58,0,0 -Example1_ref 723 . G T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=2.9567E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:147,146,0,0 0/0:.:123:122:1:0.81%:65,57,0,1 -Example1_ref 724 . G A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=2.8904E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:155,150,0,0 0/0:.:124:123:1:0.81%:65,58,0,1 -Example1_ref 725 . T . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:159,147,0,0 0/0:.:127:127:0:0%:68,59,0,0 -Example1_ref 726 . C A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.1327E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:158,142,0,1 0/0:.:121:121:0:0%:65,56,0,0 -Example1_ref 727 . C A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=7.0905E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:148,141,0,1 0/0:.:119:119:0:0%:65,54,0,0 -Example1_ref 728 . C T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=2.8972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:0:0%:162,142,0,0 0/0:.:124:123:1:0.81%:69,54,1,0 -Example1_ref 729 . A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:160,150,0,0 0/0:.:129:129:0:0%:70,59,0,0 -Example1_ref 730 . A G . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=7.0615E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:159,150,1,0 0/0:.:129:129:0:0%:70,59,0,0 -Example1_ref 731 . C A . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=7.1202E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:164,149,0,1 0/0:.:127:127:0:0%:69,58,0,0 -Example1_ref 732 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:157,146,0,0 0/0:.:122:121:0:0%:62,59,0,0 -Example1_ref 733 . G . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:0:0%:157,144,0,0 0/0:.:123:123:0:0%:65,58,0,0 -Example1_ref 734 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:152,134,0,0 0/0:.:117:117:0:0%:61,56,0,0 -Example1_ref 735 . G GAC . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=4.9819E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:291:1:0.34%:157,134,1,0 0/0:.:120:119:1:0.83%:63,56,1,0 -Example1_ref 736 . C . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:0:0%:158,134,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 737 . T C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:155,136,1,0 0/0:.:118:118:0:0%:65,53,0,0 -Example1_ref 738 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:157,138,0,0 0/0:.:115:115:0:0%:64,51,0,0 -Example1_ref 739 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:158,137,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 740 . G . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:159,138,0,0 0/0:.:112:112:0:0%:58,54,0,0 -Example1_ref 741 . T C . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=5.1819E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:155,139,2,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 742 . A G . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=7.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:159,136,1,0 0/0:.:111:111:0:0%:61,50,0,0 -Example1_ref 743 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:158,136,0,0 0/0:.:113:113:0:0%:60,53,0,0 -Example1_ref 744 . C . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:166,134,0,0 0/0:.:112:112:0:0%:62,50,0,0 -Example1_ref 745 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:164,143,0,0 0/0:.:115:115:0:0%:62,53,0,0 -Example1_ref 746 . C . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:166,143,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 747 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:161,142,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 748 . T . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:163,140,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 749 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:155,143,0,0 0/0:.:110:110:0:0%:57,53,0,0 -Example1_ref 750 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:154,141,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 751 . G . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:146,141,0,0 0/0:.:106:106:0:0%:51,55,0,0 -Example1_ref 752 . GT G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.3096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:146,141,1,0 0/0:.:106:106:0:0%:51,55,0,0 -Example1_ref 753 . T . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:151,136,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 754 . T G . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=7.4278E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:282:1:0.35%:149,133,1,0 0/0:.:98:98:0:0%:54,44,0,0 -Example1_ref 755 . G T . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=2.6371E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:150,132,0,0 0/0:.:101:100:1:0.99%:54,46,0,1 -Example1_ref 756 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:148,136,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 757 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:145,136,0,0 0/0:.:97:97:0:0%:51,46,0,0 -Example1_ref 758 . A ACAG . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=4.5435E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:146,139,1,0 0/0:.:101:100:1:0.99%:52,48,0,1 -Example1_ref 759 . C CCTGTCTCTT . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=7.5196E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:150,137,1,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 760 . A G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.398E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:154,135,1,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 761 . T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:157,131,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 762 . T G . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=7.3804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:160,132,1,0 0/0:.:104:104:0:0%:54,50,0,0 -Example1_ref 763 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:158,133,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 764 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:166,135,0,0 0/0:.:105:105:0:0%:54,51,0,0 -Example1_ref 765 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:166,131,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 766 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:166,131,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 767 . A G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:167,134,1,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 768 . C A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:166,130,0,1 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 769 . A G . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=2.6463E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:167,122,0,0 0/0:.:104:103:1:0.96%:56,47,0,1 -Example1_ref 770 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 771 . T . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:166,121,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 772 . G A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=2.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:163,123,0,0 0/0:.:104:103:1:0.96%:55,48,0,1 -Example1_ref 773 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:167,122,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 774 . A G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=2.641E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:165,122,0,0 0/0:.:103:102:1:0.97%:53,49,1,0 -Example1_ref 775 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:165,119,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 776 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:168,121,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 777 . C . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:163,121,0,0 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 778 . C . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:171,118,0,0 0/0:.:106:105:0:0%:55,50,0,0 -Example1_ref 779 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:169,118,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 780 . G A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=7.4293E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:172,116,0,1 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 781 . C A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.3724E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:173,115,0,1 0/0:.:103:103:0:0%:54,49,0,0 -Example1_ref 782 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:175,118,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 783 . G . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:174,118,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 784 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:175,116,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 785 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:172,117,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 786 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:170,117,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 787 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:173,112,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 788 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:174,114,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 789 . A T . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=2.5984E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:170,112,0,0 0/0:.:99:98:1:1.01%:51,47,1,0 -Example1_ref 790 . T A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=7.374E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:169,108,1,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 791 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:173,112,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 792 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:173,111,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 793 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:173,112,0,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 794 . A . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:168,116,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 795 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:176,112,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 796 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:176,116,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 797 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:173,117,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 798 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:178,113,0,0 0/0:.:99:99:0:0%:55,44,0,0 -Example1_ref 799 . C . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:179,114,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 800 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:179,117,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 801 . T . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:178,117,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 802 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:174,123,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 803 . G . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:174,122,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 804 . A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:170,125,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 805 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:299:0:0%:175,124,0,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 806 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:0:0%:173,124,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 807 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:0:0%:174,121,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 808 . G . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:0:0%:176,120,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 809 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:0:0%:176,122,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 810 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:180,123,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 811 . T G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=4.4707E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:182,122,0,1 0/0:.:105:104:1:0.95%:57,47,0,1 -Example1_ref 812 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:179,120,0,0 0/0:.:105:105:0:0%:58,47,0,0 -Example1_ref 813 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:185,122,0,0 0/0:.:105:105:0:0%:58,47,0,0 -Example1_ref 814 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:184,123,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 815 . C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:183,118,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 816 . A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:181,120,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 817 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:184,120,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 818 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:175,120,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 819 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:182,117,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 820 . T A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=2.5564E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:178,119,0,0 0/0:.:102:101:1:0.98%:57,44,0,1 -Example1_ref 821 . G . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:185,119,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 822 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:183,113,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 823 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:184,116,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 824 . G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:183,117,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 825 . G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:184,120,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 826 . T . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:190,124,0,0 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 827 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:185,126,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 828 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:187,127,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 829 . T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:198,126,0,0 0/0:.:105:105:0:0%:61,44,0,0 -Example1_ref 830 . T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:196,128,0,0 0/0:.:107:107:0:0%:62,45,0,0 -Example1_ref 831 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:211,131,0,0 0/0:.:109:108:0:0%:63,45,0,0 -Example1_ref 832 . C CCTGTCTCTT . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.6327E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:214,130,1,0 0/0:.:107:107:0:0%:62,45,0,0 -Example1_ref 833 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:214,130,0,0 0/0:.:108:108:0:0%:63,45,0,0 -Example1_ref 834 . T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:211,130,0,0 0/0:.:108:108:0:0%:63,45,0,0 -Example1_ref 835 . A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:213,132,0,0 0/0:.:108:108:0:0%:62,46,0,0 -Example1_ref 836 . A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:212,133,0,0 0/0:.:108:108:0:0%:62,46,0,0 -Example1_ref 837 . G GCTGTCTCTTAT . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=2.3661E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:209,133,0,0 0/0:.:106:105:1:0.94%:59,46,1,0 -Example1_ref 838 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:211,122,0,0 0/0:.:103:103:0:0%:59,44,0,0 -Example1_ref 839 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:207,131,0,0 0/0:.:100:100:0:0%:56,44,0,0 -Example1_ref 840 . ATG A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=2.2748E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:214,129,0,0 0/0:.:102:100:1:0.99%:58,42,0,1 -Example1_ref 841 . T A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.7727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:341:1:0.29%:213,128,1,0 0/0:.:98:98:0:0%:59,39,0,0 -Example1_ref 842 . G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:207,130,0,0 0/0:.:94:94:0:0%:53,41,0,0 -Example1_ref 843 . C G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.7934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:205,126,1,0 0/0:.:94:94:0:0%:56,38,0,0 -Example1_ref 844 . AGGT A . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=7.7629E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:1:0.29%:215,131,1,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 845 . GGTCTC G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=2.1262E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:206,131,0,0 0/0:.:91:90:1:1.1%:48,42,0,1 -Example1_ref 846 . G T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=6.1721E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:321:2:0.62%:195,126,2,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 847 . T TCAAAG . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.8897E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:328:1:0.3%:200,128,1,0 0/0:.:89:88:0:0%:47,41,0,0 -Example1_ref 848 . C CAAA . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=2.1154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:205,123,0,0 0/0:.:88:87:1:1.14%:46,41,1,0 -Example1_ref 849 . T . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:0:0%:211,125,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 850 . C A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=7.9286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:332:1:0.3%:203,129,1,0 0/0:.:87:87:0:0%:47,40,0,0 -Example1_ref 851 . G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:0:0%:202,125,0,0 0/0:.:85:85:0:0%:46,39,0,0 -Example1_ref 852 . C . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:203,125,0,0 0/0:.:88:88:0:0%:46,42,0,0 -Example1_ref 853 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:207,125,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 854 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:206,122,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 855 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:207,124,0,0 0/0:.:85:85:0:0%:44,41,0,0 -Example1_ref 856 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:207,128,0,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 857 . T . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:210,124,0,0 0/0:.:87:87:0:0%:45,42,0,0 -Example1_ref 858 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:208,125,0,0 0/0:.:85:85:0:0%:44,41,0,0 -Example1_ref 859 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:214,126,0,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 860 . T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:341:0:0%:215,126,0,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 861 . T . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:214,121,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 862 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:212,124,0,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 863 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:214,125,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 864 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:213,127,0,0 0/0:.:94:94:0:0%:50,44,0,0 -Example1_ref 865 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:213,132,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 866 . A C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.8475E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:211,138,1,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 867 . C . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:214,135,0,0 0/0:.:96:96:0:0%:49,47,0,0 -Example1_ref 868 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:218,135,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 869 . A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:216,136,0,0 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 870 . T . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:214,135,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 871 . C . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:211,136,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 872 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:211,142,0,0 0/0:.:97:97:0:0%:51,46,0,0 -Example1_ref 873 . G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:211,139,0,0 0/0:.:94:94:0:0%:49,45,0,0 -Example1_ref 874 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:211,139,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 875 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:212,138,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 876 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:218,140,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 877 . T . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:218,141,0,0 0/0:.:98:98:0:0%:50,48,0,0 -Example1_ref 878 . G T . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=2.1333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:0:0%:212,142,0,0 0/0:.:96:95:1:1.04%:49,46,1,0 -Example1_ref 879 . G T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.8125E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:209,140,1,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 880 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:217,143,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 881 . A . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:213,139,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 882 . T . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:214,140,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 883 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:212,141,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 884 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:213,144,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 885 . A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:209,141,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 886 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:201,142,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 887 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:204,142,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 888 . C . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:202,139,0,0 0/0:.:88:88:0:0%:50,38,0,0 -Example1_ref 889 . T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:202,138,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 890 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:203,141,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 891 . G . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:197,141,0,0 0/0:.:91:91:0:0%:52,39,0,0 -Example1_ref 892 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:197,139,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 893 . A G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.8719E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:343:1:0.29%:202,141,0,1 0/0:.:94:93:0:0%:51,42,0,0 -Example1_ref 894 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:0:0%:199,140,0,0 0/0:.:86:86:0:0%:47,39,0,0 -Example1_ref 895 . G . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:192,138,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 896 . G T . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=5.0723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:326:2:0.61%:185,141,2,0 0/0:.:87:86:1:1.15%:46,40,1,0 -Example1_ref 897 . C A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=7.9021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:193,145,1,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 898 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:196,146,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 899 . G . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:189,144,0,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 900 . C A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=7.8837E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:196,142,0,1 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 901 . T A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=7.8555E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:1:0.3%:196,140,1,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 902 . T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:194,143,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 903 . T . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:193,143,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 904 . G T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=3.7033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:330:1:0.3%:184,146,1,0 0/0:.:86:85:1:1.16%:43,42,1,0 -Example1_ref 905 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:196,147,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 906 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:191,143,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 907 . T TAAAA . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=7.8522E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:194,145,1,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 908 . C . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:0:0%:197,141,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 909 . T . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:201,142,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 910 . A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:207,143,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 911 . TC T . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=7.9365E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:208,141,1,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 912 . C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:206,144,0,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 913 . C T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.9091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:202,145,1,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 914 . A . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:199,144,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 915 . C . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:203,142,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 916 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:204,144,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 917 . C G . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=7.931E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:203,141,1,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 918 . T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:201,140,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 919 . C . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:202,141,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 920 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:200,142,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 921 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:196,140,0,0 0/0:.:92:92:0:0%:48,44,0,0 -Example1_ref 922 . A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:202,141,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 923 . C . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:201,136,0,0 0/0:.:94:94:0:0%:50,44,0,0 -Example1_ref 924 . C . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:197,137,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 925 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:190,140,0,0 0/0:.:96:96:0:0%:49,47,0,0 -Example1_ref 926 . G . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:196,137,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 927 . A G . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=7.7546E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:334:1:0.3%:197,137,0,1 0/0:.:97:97:0:0%:49,48,0,0 -Example1_ref 928 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:201,140,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 929 . A C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.7189E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:193,141,1,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 930 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:199,141,0,0 0/0:.:98:98:0:0%:50,48,0,0 -Example1_ref 931 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:341:0:0%:201,140,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 932 . A . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:200,143,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 933 . A ATCTGTC . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:198,141,1,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 934 . T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:190,139,0,0 0/0:.:100:99:0:0%:50,49,0,0 -Example1_ref 935 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:190,134,0,0 0/0:.:93:93:0:0%:49,44,0,0 -Example1_ref 936 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:190,135,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 937 . A C . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=7.7156E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:193,137,0,1 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 938 . T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:193,138,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 939 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:190,140,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 940 . A . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:195,141,0,0 0/0:.:97:97:0:0%:52,45,0,0 -Example1_ref 941 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:192,137,0,0 0/0:.:95:95:0:0%:49,46,0,0 -Example1_ref 942 . A G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=2.2931E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:188,138,0,0 0/0:.:98:96:1:1.03%:51,45,0,1 -Example1_ref 943 . A C . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=7.6815E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:188,139,0,1 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 944 . G . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:0:0%:183,143,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 945 . C . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:191,138,0,0 0/0:.:98:98:0:0%:54,44,0,0 -Example1_ref 946 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:186,135,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 947 . C G . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=7.7049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:191,137,0,1 0/0:.:98:98:0:0%:57,41,0,0 -Example1_ref 948 . T A . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=7.6102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:191,136,0,1 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 949 . AATG A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=7.5943E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:184,137,1,0 0/0:.:103:102:0:0%:56,46,0,0 -Example1_ref 950 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:174,138,0,0 0/0:.:97:97:0:0%:53,44,0,0 -Example1_ref 951 . T . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:185,140,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 952 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:174,144,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 953 . G T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=7.6528E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:172,140,1,0 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 954 . A T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=7.5912E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:167,144,0,1 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 955 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:179,145,0,0 0/0:.:102:102:0:0%:53,49,0,0 -Example1_ref 956 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:182,145,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 957 . T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:184,144,0,0 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 958 . G . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:190,144,0,0 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 959 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:187,149,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 960 . A G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=7.6835E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:188,146,0,1 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 961 . T . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:185,144,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 962 . T A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=2.2917E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:188,145,0,0 0/0:.:99:98:1:1.01%:53,45,0,1 -Example1_ref 963 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:187,143,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 964 . A G . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=7.6674E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:187,144,0,1 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 965 . T G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=7.6798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:187,143,1,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 966 . C . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:193,142,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 967 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:191,139,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 968 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:188,137,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 969 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:0:0%:182,141,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 970 . A G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.6596E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:186,137,0,1 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 971 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:0:0%:183,137,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 972 . G T . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=7.6329E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:315:1:0.32%:176,139,1,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 973 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:183,140,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 974 . C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:181,140,0,0 0/0:.:94:94:0:0%:50,44,0,0 -Example1_ref 975 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:317:0:0%:178,139,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 976 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:183,143,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 977 . C CT . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=2.2619E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:183,142,0,0 0/0:.:95:94:1:1.05%:47,47,1,0 -Example1_ref 978 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:180,141,0,0 0/0:.:95:95:0:0%:49,46,0,0 -Example1_ref 979 . C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:185,140,0,0 0/0:.:90:89:0:0%:47,42,0,0 -Example1_ref 980 . G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:176,141,0,0 0/0:.:96:95:0:0%:48,47,0,0 -Example1_ref 981 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:179,142,0,0 0/0:.:97:96:0:0%:51,45,0,0 -Example1_ref 982 . T G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=2.3206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:179,142,0,0 0/0:.:97:96:1:1.03%:52,44,1,0 -Example1_ref 983 . C A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5935E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:186,138,0,1 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 984 . C . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:186,143,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 985 . A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:198,144,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 986 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:198,143,0,0 0/0:.:103:103:0:0%:59,44,0,0 -Example1_ref 987 . T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:198,147,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 988 . C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:195,144,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 989 . A G . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=7.5847E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:189,146,1,0 0/0:.:107:107:0:0%:59,48,0,0 -Example1_ref 990 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:192,140,0,0 0/0:.:106:106:0:0%:60,46,0,0 -Example1_ref 991 . C A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=7.6072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:1:0.3%:193,143,0,1 0/0:.:106:106:0:0%:60,46,0,0 -Example1_ref 992 . T . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:194,139,0,0 0/0:.:106:106:0:0%:59,47,0,0 -Example1_ref 993 . G . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:192,141,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 994 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:199,138,0,0 0/0:.:105:105:0:0%:59,46,0,0 -Example1_ref 995 . ATCC A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=7.631E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:198,136,0,1 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 996 . T C . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=5.769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:327:2:0.61%:191,136,2,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 997 . C . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:191,132,0,0 0/0:.:102:102:0:0%:59,43,0,0 -Example1_ref 998 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:188,129,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 999 . T . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:188,130,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 1000 . C A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.5943E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:189,132,0,1 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 1001 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:189,135,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 1002 . G . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:185,136,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 1003 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:185,133,0,0 0/0:.:100:100:0:0%:56,44,0,0 -Example1_ref 1004 . G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:181,131,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 1005 . A C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=7.3976E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:1:0.33%:178,128,0,1 0/0:.:108:108:0:0%:64,44,0,0 -Example1_ref 1006 . T A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=7.5234E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:192,129,0,1 0/0:.:106:106:0:0%:64,42,0,0 -Example1_ref 1007 . C T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=4.4053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:194,129,0,1 0/0:.:109:108:1:0.92%:66,42,1,0 -Example1_ref 1008 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:193,136,0,0 0/0:.:109:109:0:0%:65,44,0,0 -Example1_ref 1009 . C . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:196,135,0,0 0/0:.:112:112:0:0%:67,45,0,0 -Example1_ref 1010 . A ACTGTCTCTT . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=2.5336E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:198,135,0,0 0/0:.:113:112:1:0.88%:66,46,1,0 -Example1_ref 1011 . T C . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.4661E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:1:0.3%:195,134,0,1 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 1012 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:194,138,0,0 0/0:.:111:111:0:0%:67,44,0,0 -Example1_ref 1013 . C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:195,140,0,0 0/0:.:111:111:0:0%:67,44,0,0 -Example1_ref 1014 . A AC . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=7.4773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:328:1:0.3%:194,134,1,0 0/0:.:111:111:0:0%:67,44,0,0 -Example1_ref 1015 . T G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.4658E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:194,132,0,1 0/0:.:111:111:0:0%:66,45,0,0 -Example1_ref 1016 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:185,127,0,0 0/0:.:106:106:0:0%:64,42,0,0 -Example1_ref 1017 . G A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.4057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:184,129,1,0 0/0:.:110:110:0:0%:64,46,0,0 -Example1_ref 1018 . TGAG T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=7.3893E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:1:0.32%:190,126,1,0 0/0:.:112:112:0:0%:67,45,0,0 -Example1_ref 1019 . G T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.343E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:179,124,1,0 0/0:.:110:110:0:0%:65,45,0,0 -Example1_ref 1020 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:184,126,0,0 0/0:.:114:114:0:0%:70,44,0,0 -Example1_ref 1021 . G . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:173,124,0,0 0/0:.:112:112:0:0%:67,45,0,0 -Example1_ref 1022 . T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:174,126,0,0 0/0:.:113:113:0:0%:68,45,0,0 -Example1_ref 1023 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:176,127,0,0 0/0:.:110:110:0:0%:69,41,0,0 -Example1_ref 1024 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:178,122,0,0 0/0:.:112:112:0:0%:68,44,0,0 -Example1_ref 1025 . G . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:177,124,0,0 0/0:.:114:114:0:0%:68,46,0,0 -Example1_ref 1026 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:179,122,0,0 0/0:.:115:115:0:0%:69,46,0,0 -Example1_ref 1027 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:178,127,0,0 0/0:.:117:117:0:0%:69,48,0,0 -Example1_ref 1028 . C . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:176,121,0,0 0/0:.:114:114:0:0%:68,46,0,0 -Example1_ref 1029 . C T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.6075E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:175,123,0,0 0/0:.:114:112:2:1.75%:67,45,2,0 -Example1_ref 1030 . A C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.2619E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:179,125,0,1 0/0:.:115:115:0:0%:69,46,0,0 -Example1_ref 1031 . G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:176,123,0,0 0/0:.:114:114:0:0%:67,47,0,0 -Example1_ref 1032 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:112:112:0:0%:70,42,0,0 -Example1_ref 1033 . C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:182,123,0,0 0/0:.:117:117:0:0%:72,45,0,0 -Example1_ref 1034 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:178,124,0,0 0/0:.:115:115:0:0%:69,46,0,0 -Example1_ref 1035 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:179,125,0,0 0/0:.:120:120:0:0%:73,47,0,0 -Example1_ref 1036 . C . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:182,122,0,0 0/0:.:119:119:0:0%:74,45,0,0 -Example1_ref 1037 . T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:182,126,0,0 0/0:.:121:121:0:0%:74,47,0,0 -Example1_ref 1038 . A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:183,129,0,0 0/0:.:127:127:0:0%:79,48,0,0 -Example1_ref 1039 . T G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=4.9798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:303:2:0.66%:183,120,0,2 0/0:.:127:127:0:0%:79,48,0,0 -Example1_ref 1040 . C . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:180,122,0,0 0/0:.:125:125:0:0%:78,47,0,0 -Example1_ref 1041 . C . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:173,122,0,0 0/0:.:124:124:0:0%:79,45,0,0 -Example1_ref 1042 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:179,123,0,0 0/0:.:126:126:0:0%:79,47,0,0 -Example1_ref 1043 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:181,122,0,0 0/0:.:126:126:0:0%:80,46,0,0 -Example1_ref 1044 . C . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:179,119,0,0 0/0:.:123:123:0:0%:80,43,0,0 -Example1_ref 1045 . C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:184,121,0,0 0/0:.:125:125:0:0%:80,45,0,0 -Example1_ref 1046 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:189,122,0,0 0/0:.:125:125:0:0%:79,46,0,0 -Example1_ref 1047 . T . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:187,122,0,0 0/0:.:126:126:0:0%:79,47,0,0 -Example1_ref 1048 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:186,121,0,0 0/0:.:125:125:0:0%:79,46,0,0 -Example1_ref 1049 . T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:184,123,0,0 0/0:.:124:124:0:0%:77,47,0,0 -Example1_ref 1050 . G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:184,123,0,0 0/0:.:124:124:0:0%:78,46,0,0 -Example1_ref 1051 . G A . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=7.4206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:311:3:0.96%:188,123,3,0 0/0:.:127:125:1:0.79%:79,46,1,0 -Example1_ref 1052 . A . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:191,118,0,0 0/0:.:124:123:0:0%:78,45,0,0 -Example1_ref 1053 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:191,118,0,0 0/0:.:125:124:0:0%:79,45,0,0 -Example1_ref 1054 . T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:192,117,0,0 0/0:.:120:119:0:0%:77,42,0,0 -Example1_ref 1055 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:192,107,0,0 0/0:.:121:120:0:0%:77,43,0,0 -Example1_ref 1056 . A G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=2.9009E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:195,106,0,0 0/0:.:123:122:1:0.81%:79,43,1,0 -Example1_ref 1057 . T . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:201,109,0,0 0/0:.:125:125:0:0%:81,44,0,0 -Example1_ref 1058 . G C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=2.8211E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:199,114,0,0 0/0:.:123:122:1:0.81%:78,44,1,0 -Example1_ref 1059 . C A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=4.9537E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:202,109,1,0 0/0:.:127:126:1:0.79%:83,43,0,1 -Example1_ref 1060 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:200,116,0,0 0/0:.:130:130:0:0%:82,48,0,0 -Example1_ref 1061 . A T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=7.0227E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:192,116,0,1 0/0:.:131:131:0:0%:81,50,0,0 -Example1_ref 1062 . TG T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.0814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:197,115,1,0 0/0:.:129:129:0:0%:82,47,0,0 -Example1_ref 1063 . G . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:194,117,0,0 0/0:.:134:134:0:0%:85,49,0,0 -Example1_ref 1064 . G T . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=3.0206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:191,114,0,0 0/0:.:132:131:1:0.76%:84,47,1,0 -Example1_ref 1065 . G . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:190,117,0,0 0/0:.:138:138:0:0%:88,50,0,0 -Example1_ref 1066 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:193,116,0,0 0/0:.:139:139:0:0%:88,51,0,0 -Example1_ref 1067 . G . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:194,119,0,0 0/0:.:138:138:0:0%:88,50,0,0 -Example1_ref 1068 . T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:195,113,0,0 0/0:.:141:141:0:0%:90,51,0,0 -Example1_ref 1069 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:193,126,0,0 0/0:.:143:143:0:0%:89,54,0,0 -Example1_ref 1070 . G . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:187,127,0,0 0/0:.:145:145:0:0%:91,54,0,0 -Example1_ref 1071 . C . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:190,120,0,0 0/0:.:141:141:0:0%:90,51,0,0 -Example1_ref 1072 . AGTT A . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=3.0886E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:193,127,0,0 0/0:.:143:142:1:0.7%:90,52,0,1 -Example1_ref 1073 . G A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=5.2118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:1:0.32%:191,123,1,0 0/0:.:141:139:1:0.71%:90,49,0,1 -Example1_ref 1074 . T G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=3.1385E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:317:0:0%:192,125,0,0 0/0:.:146:144:1:0.69%:92,52,0,1 -Example1_ref 1075 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:0:0%:192,123,0,0 0/0:.:147:146:0:0%:91,55,0,0 -Example1_ref 1076 . G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:199,126,0,0 0/0:.:153:153:0:0%:97,56,0,0 -Example1_ref 1077 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:203,125,0,0 0/0:.:158:158:0:0%:100,58,0,0 -Example1_ref 1078 . A . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:199,127,0,0 0/0:.:157:157:0:0%:98,59,0,0 -Example1_ref 1079 . C A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=6.6876E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:318:1:0.31%:199,119,0,1 0/0:.:158:158:0:0%:99,59,0,0 -Example1_ref 1080 . A . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:200,126,0,0 0/0:.:157:157:0:0%:97,60,0,0 -Example1_ref 1081 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:201,122,0,0 0/0:.:159:159:0:0%:99,60,0,0 -Example1_ref 1082 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:0:0%:200,125,0,0 0/0:.:160:160:0:0%:100,60,0,0 -Example1_ref 1083 . A . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:326:0:0%:200,126,0,0 0/0:.:163:163:0:0%:102,61,0,0 -Example1_ref 1084 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:206,131,0,0 0/0:.:159:159:0:0%:100,59,0,0 -Example1_ref 1085 . A AG . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=6.7671E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:1:0.3%:206,130,0,1 0/0:.:161:161:0:0%:102,59,0,0 -Example1_ref 1086 . G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:200,129,0,0 0/0:.:159:159:0:0%:100,59,0,0 -Example1_ref 1087 . A T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=3.2449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:202,129,0,0 0/0:.:159:158:1:0.63%:98,60,1,0 -Example1_ref 1088 . G T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=3.313E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:197,132,0,0 0/0:.:163:162:1:0.61%:103,59,1,0 -Example1_ref 1089 . C . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:0:0%:204,130,0,0 0/0:.:161:161:0:0%:103,58,0,0 -Example1_ref 1090 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:203,135,0,0 0/0:.:164:164:0:0%:104,60,0,0 -Example1_ref 1091 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:215,135,0,0 0/0:.:169:169:0:0%:108,61,0,0 -Example1_ref 1092 . T TTAGA . PASS DP=525;SS=0;SSC=0;GPV=1E0;SPV=6.7176E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:214,137,1,0 0/0:.:172:172:0:0%:111,61,0,0 -Example1_ref 1093 . G . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:211,136,0,0 0/0:.:169:169:0:0%:110,59,0,0 -Example1_ref 1094 . C A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=5.5598E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:217,130,0,1 0/0:.:174:173:1:0.57%:114,59,0,1 -Example1_ref 1095 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:215,144,0,0 0/0:.:177:177:0:0%:113,64,0,0 -Example1_ref 1096 . A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:221,145,0,0 0/0:.:180:180:0:0%:115,65,0,0 -Example1_ref 1097 . C . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:219,139,0,0 0/0:.:178:178:0:0%:115,63,0,0 -Example1_ref 1098 . A . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:213,144,0,0 0/0:.:178:178:0:0%:115,63,0,0 -Example1_ref 1099 . G A . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=6.6789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:363:1:0.27%:220,143,1,0 0/0:.:181:181:0:0%:117,64,0,0 -Example1_ref 1100 . T . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:219,138,0,0 0/0:.:180:180:0:0%:116,64,0,0 -Example1_ref 1101 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:219,139,0,0 0/0:.:178:178:0:0%:115,63,0,0 -Example1_ref 1102 . T A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=3.3396E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:218,139,0,0 0/0:.:179:178:1:0.56%:113,65,1,0 -Example1_ref 1103 . G . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:221,145,0,0 0/0:.:178:178:0:0%:116,62,0,0 -Example1_ref 1104 . T G . PASS DP=539;SS=0;SSC=0;GPV=1E0;SPV=5.5183E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:222,138,1,0 0/0:.:178:177:1:0.56%:115,62,1,0 -Example1_ref 1105 . G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:211,140,0,0 0/0:.:173:173:0:0%:111,62,0,0 -Example1_ref 1106 . A G . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=3.3459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:214,140,0,0 0/0:.:178:177:1:0.56%:113,64,1,0 -Example1_ref 1107 . CG C . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=5.5431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:216,141,0,1 0/0:.:178:177:1:0.56%:114,63,1,0 -Example1_ref 1108 . G . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:217,140,0,0 0/0:.:174:174:0:0%:113,61,0,0 -Example1_ref 1109 . G T . PASS DP=525;SS=0;SSC=0;GPV=1E0;SPV=3.219E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:217,139,0,0 0/0:.:169:168:1:0.59%:110,58,1,0 -Example1_ref 1110 . G T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=5.4845E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:217,141,1,0 0/0:.:175:174:1:0.57%:113,61,1,0 -Example1_ref 1111 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:219,142,0,0 0/0:.:173:173:0:0%:112,61,0,0 -Example1_ref 1112 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:217,144,0,0 0/0:.:171:171:0:0%:112,59,0,0 -Example1_ref 1113 . G . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:230,142,0,0 0/0:.:174:174:0:0%:113,61,0,0 -Example1_ref 1114 . A T . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=6.8412E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:1:0.26%:233,145,1,0 0/0:.:175:175:0:0%:117,58,0,0 -Example1_ref 1115 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:231,142,0,0 0/0:.:175:175:0:0%:116,59,0,0 -Example1_ref 1116 . C . PASS DP=545;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:228,143,0,0 0/0:.:174:174:0:0%:117,57,0,0 -Example1_ref 1117 . A . PASS DP=579;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:227,160,0,0 0/0:.:192:192:0:0%:118,74,0,0 -Example1_ref 1118 . T C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=6.7388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:404:1:0.25%:243,161,1,0 0/0:.:196:196:0:0%:120,76,0,0 -Example1_ref 1119 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:241,169,0,0 0/0:.:200:200:0:0%:123,77,0,0 -Example1_ref 1120 . T C . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=6.7402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:396:1:0.25%:232,164,1,0 0/0:.:192:192:0:0%:118,74,0,0 -Example1_ref 1121 . CT C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=4.4778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:401:2:0.5%:237,164,2,0 0/0:.:199:199:0:0%:122,77,0,0 -Example1_ref 1122 . TA T . PASS DP=607;SS=0;SSC=0;GPV=1E0;SPV=6.7219E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:405:1:0.25%:238,167,1,0 0/0:.:198:198:0:0%:122,76,0,0 -Example1_ref 1123 . A . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:0:0%:244,170,0,0 0/0:.:198:198:0:0%:119,79,0,0 -Example1_ref 1124 . G . PASS DP=615;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:244,173,0,0 0/0:.:198:198:0:0%:118,80,0,0 -Example1_ref 1125 . A C . PASS DP=627;SS=0;SSC=0;GPV=1E0;SPV=5.5378E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:250,168,1,0 0/0:.:208:207:1:0.48%:127,80,0,1 -Example1_ref 1126 . T . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:252,172,0,0 0/0:.:206:206:0:0%:126,80,0,0 -Example1_ref 1127 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:251,170,0,0 0/0:.:197:197:0:0%:120,77,0,0 -Example1_ref 1128 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:413:0:0%:247,166,0,0 0/0:.:199:199:0:0%:123,76,0,0 -Example1_ref 1129 . T . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:250,166,0,0 0/0:.:195:195:0:0%:121,74,0,0 -Example1_ref 1130 . G T . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=6.8821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:252,173,1,0 0/0:.:193:193:0:0%:117,76,0,0 -Example1_ref 1131 . A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:251,173,0,0 0/0:.:200:200:0:0%:121,79,0,0 -Example1_ref 1132 . C . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:255,168,0,0 0/0:.:197:197:0:0%:122,75,0,0 -Example1_ref 1133 . A . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:253,176,0,0 0/0:.:201:201:0:0%:123,78,0,0 -Example1_ref 1134 . T . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:252,170,0,0 0/0:.:197:197:0:0%:122,75,0,0 -Example1_ref 1135 . G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:262,175,0,0 0/0:.:197:197:0:0%:121,76,0,0 -Example1_ref 1136 . T . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:262,175,0,0 0/0:.:204:204:0:0%:124,80,0,0 -Example1_ref 1137 . T C . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=6.8095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:261,167,1,0 0/0:.:201:201:0:0%:123,78,0,0 -Example1_ref 1138 . C . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:255,168,0,0 0/0:.:198:198:0:0%:121,77,0,0 -Example1_ref 1139 . C A . PASS DP=633;SS=0;SSC=0;GPV=1E0;SPV=6.7722E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:427:1:0.23%:260,167,0,1 0/0:.:204:204:0:0%:124,80,0,0 -Example1_ref 1140 . A . PASS DP=651;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:263,179,0,0 0/0:.:209:209:0:0%:128,81,0,0 -Example1_ref 1141 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:262,179,0,0 0/0:.:209:209:0:0%:128,81,0,0 -Example1_ref 1142 . C A . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=3.1938E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:0:0%:263,176,0,0 0/0:.:207:205:1:0.49%:124,81,0,1 -Example1_ref 1143 . T G . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=3.2504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:260,174,0,0 0/0:.:210:208:1:0.48%:124,84,1,0 -Example1_ref 1144 . A T . PASS DP=655;SS=0;SSC=0;GPV=1E0;SPV=6.7481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:265,176,1,0 0/0:.:213:213:0:0%:128,85,0,0 -Example1_ref 1145 . G . PASS DP=639;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:261,174,0,0 0/0:.:204:204:0:0%:124,80,0,0 -Example1_ref 1146 . G T . PASS DP=637;SS=0;SSC=0;GPV=1E0;SPV=3.281E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:256,172,0,0 0/0:.:209:208:1:0.48%:126,82,0,1 -Example1_ref 1147 . A T . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=6.7697E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:1:0.23%:259,178,1,0 0/0:.:209:209:0:0%:123,86,0,0 -Example1_ref 1148 . C A . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=6.7134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:430:1:0.23%:256,174,0,1 0/0:.:211:211:0:0%:128,83,0,0 -Example1_ref 1149 . A . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:259,172,0,0 0/0:.:215:215:0:0%:131,84,0,0 -Example1_ref 1150 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:257,174,0,0 0/0:.:217:217:0:0%:129,88,0,0 -Example1_ref 1151 . G . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:258,178,0,0 0/0:.:216:216:0:0%:131,85,0,0 -Example1_ref 1152 . C . PASS DP=657;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:268,174,0,0 0/0:.:215:215:0:0%:129,86,0,0 -Example1_ref 1153 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:266,186,0,0 0/0:.:222:222:0:0%:133,89,0,0 -Example1_ref 1154 . G . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:271,186,0,0 0/0:.:220:220:0:0%:133,87,0,0 -Example1_ref 1155 . T A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=6.7507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:272,182,1,0 0/0:.:219:219:0:0%:133,86,0,0 -Example1_ref 1156 . A G . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=6.7608E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:271,183,0,1 0/0:.:218:218:0:0%:132,86,0,0 -Example1_ref 1157 . G T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=3.2143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:273,183,0,0 0/0:.:216:215:1:0.46%:130,85,1,0 -Example1_ref 1158 . C CTGTCTCTTATA . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=6.7534E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:272,168,1,0 0/0:.:212:212:0:0%:133,79,0,0 -Example1_ref 1159 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:0:0%:274,189,0,0 0/0:.:226:226:0:0%:134,92,0,0 -Example1_ref 1160 . C . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:277,184,0,0 0/0:.:223:223:0:0%:135,88,0,0 -Example1_ref 1161 . G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:274,187,0,0 0/0:.:225:225:0:0%:134,91,0,0 -Example1_ref 1162 . T A . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=5.5133E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:1:0.22%:274,184,0,1 0/0:.:226:225:1:0.44%:135,90,1,0 -Example1_ref 1163 . G . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:260,191,0,0 0/0:.:216:216:0:0%:130,86,0,0 -Example1_ref 1164 . A T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=3.2891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:266,189,0,0 0/0:.:223:222:1:0.45%:132,90,1,0 -Example1_ref 1165 . T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:271,186,0,0 0/0:.:227:227:0:0%:137,90,0,0 -Example1_ref 1166 . G . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:267,186,0,0 0/0:.:222:222:0:0%:131,91,0,0 -Example1_ref 1167 . C T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=5.4652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:268,181,0,1 0/0:.:218:217:1:0.46%:130,87,1,0 -Example1_ref 1168 . C A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=3.2733E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:264,184,0,0 0/0:.:218:217:1:0.46%:129,88,1,0 -Example1_ref 1169 . G . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:270,190,0,0 0/0:.:228:228:0:0%:133,95,0,0 -Example1_ref 1170 . A G . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=6.7208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:264,190,0,1 0/0:.:222:222:0:0%:126,96,0,0 -Example1_ref 1171 . A . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:265,192,0,0 0/0:.:226:226:0:0%:129,97,0,0 -Example1_ref 1172 . G . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:266,192,0,0 0/0:.:224:224:0:0%:128,96,0,0 -Example1_ref 1173 . C . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:270,187,0,0 0/0:.:225:225:0:0%:129,96,0,0 -Example1_ref 1174 . T G . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=3.2684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:262,187,0,0 0/0:.:218:217:1:0.46%:125,92,1,0 -Example1_ref 1175 . C . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:270,194,0,0 0/0:.:230:230:0:0%:127,103,0,0 -Example1_ref 1176 . A AG . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=3.2803E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:268,197,0,0 0/0:.:227:226:1:0.44%:125,101,0,1 -Example1_ref 1177 . G T . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=3.3042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:264,196,0,0 0/0:.:227:226:1:0.44%:126,100,1,0 -Example1_ref 1178 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:256,193,0,0 0/0:.:229:229:0:0%:125,104,0,0 -Example1_ref 1179 . T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:266,198,0,0 0/0:.:227:227:0:0%:127,100,0,0 -Example1_ref 1180 . G . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:258,194,0,0 0/0:.:228:228:0:0%:125,103,0,0 -Example1_ref 1181 . A . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:255,193,0,0 0/0:.:231:231:0:0%:126,105,0,0 -Example1_ref 1182 . G . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:258,192,0,0 0/0:.:228:228:0:0%:124,104,0,0 -Example1_ref 1183 . C . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:451:0:0%:257,194,0,0 0/0:.:228:228:0:0%:127,101,0,0 -Example1_ref 1184 . T C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=5.4928E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:453:1:0.22%:258,195,0,1 0/0:.:222:221:1:0.45%:124,97,1,0 -Example1_ref 1185 . C A . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=7.0093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:429:2:0.46%:263,166,0,2 0/0:.:213:212:1:0.47%:127,85,0,1 -Example1_ref 1186 . A . PASS DP=701;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:0:0%:262,201,0,0 0/0:.:237:237:0:0%:131,106,0,0 -Example1_ref 1187 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:264,201,0,0 0/0:.:245:245:0:0%:136,109,0,0 -Example1_ref 1188 . C . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:258,197,0,0 0/0:.:238:238:0:0%:135,103,0,0 -Example1_ref 1189 . A AG . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=6.5537E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:1:0.22%:263,200,0,1 0/0:.:244:244:0:0%:136,108,0,0 -Example1_ref 1190 . C T . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=6.5819E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:465:1:0.21%:265,200,0,1 0/0:.:242:242:0:0%:135,107,0,0 -Example1_ref 1191 . T . PASS DP=701;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:265,197,0,0 0/0:.:239:239:0:0%:135,104,0,0 -Example1_ref 1192 . G A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=6.5254E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:461:1:0.22%:260,201,0,1 0/0:.:246:246:0:0%:136,110,0,0 -Example1_ref 1193 . G A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=3.4143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:258,203,0,0 0/0:.:239:238:1:0.42%:130,108,0,1 -Example1_ref 1194 . A G . PASS DP=721;SS=0;SSC=0;GPV=1E0;SPV=4.3007E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:471:2:0.42%:263,208,1,1 0/0:.:248:248:0:0%:134,114,0,0 -Example1_ref 1195 . A G . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=4.3178E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:468:2:0.43%:262,206,0,2 0/0:.:245:245:0:0%:134,111,0,0 -Example1_ref 1196 . G . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:256,208,0,0 0/0:.:244:244:0:0%:131,113,0,0 -Example1_ref 1197 . A ATC . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=3.4507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:254,211,0,0 0/0:.:245:244:1:0.41%:131,113,1,0 -Example1_ref 1198 . T . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:259,210,0,0 0/0:.:241:241:0:0%:129,112,0,0 -Example1_ref 1199 . G . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:250,211,0,0 0/0:.:250:250:0:0%:130,120,0,0 -Example1_ref 1200 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:253,216,0,0 0/0:.:253:253:0:0%:128,125,0,0 -Example1_ref 1201 . A T . PASS DP=733;SS=0;SSC=0;GPV=1E0;SPV=3.5109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:0:0%:259,216,0,0 0/0:.:257:256:1:0.39%:130,126,0,1 -Example1_ref 1202 . C . PASS DP=723;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:474:0:0%:259,215,0,0 0/0:.:249:248:0:0%:128,120,0,0 -Example1_ref 1203 . T . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:263,212,0,0 0/0:.:253:252:0:0%:131,121,0,0 -Example1_ref 1204 . T . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:263,219,0,0 0/0:.:255:254:0:0%:129,125,0,0 -Example1_ref 1205 . G . PASS DP=731;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:257,221,0,0 0/0:.:253:253:0:0%:129,124,0,0 -Example1_ref 1206 . G . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:254,222,0,0 0/0:.:254:254:0:0%:124,130,0,0 -Example1_ref 1207 . A G . PASS DP=745;SS=0;SSC=0;GPV=1E0;SPV=6.5188E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:257,227,0,1 0/0:.:260:259:0:0%:130,129,0,0 -Example1_ref 1208 . GT G . PASS DP=741;SS=0;SSC=0;GPV=1E0;SPV=6.4865E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:479:1:0.21%:255,224,0,1 0/0:.:260:260:0:0%:128,132,0,0 -Example1_ref 1209 . T C . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=6.4858E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:477:1:0.21%:254,223,0,1 0/0:.:259:259:0:0%:127,132,0,0 -Example1_ref 1210 . T . PASS DP=743;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:259,226,0,0 0/0:.:258:258:0:0%:127,131,0,0 -Example1_ref 1211 . A . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:262,232,0,0 0/0:.:262:262:0:0%:127,135,0,0 -Example1_ref 1212 . C . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:263,224,0,0 0/0:.:259:259:0:0%:128,131,0,0 -Example1_ref 1213 . A . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:256,238,0,0 0/0:.:262:262:0:0%:128,134,0,0 -Example1_ref 1214 . C . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:260,229,0,0 0/0:.:257:257:0:0%:127,130,0,0 -Example1_ref 1215 . A . PASS DP=757;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:258,239,0,0 0/0:.:260:260:0:0%:127,133,0,0 -Example1_ref 1216 . C A . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=6.5821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:257,235,1,0 0/0:.:256:256:0:0%:125,131,0,0 -Example1_ref 1217 . G . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:254,237,0,0 0/0:.:255:255:0:0%:126,129,0,0 -Example1_ref 1218 . A . PASS DP=759;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:256,239,0,0 0/0:.:264:264:0:0%:131,133,0,0 -Example1_ref 1219 . A . PASS DP=751;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:255,236,0,0 0/0:.:260:260:0:0%:132,128,0,0 -Example1_ref 1220 . G . PASS DP=741;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:254,233,0,0 0/0:.:254:254:0:0%:127,127,0,0 -Example1_ref 1221 . C A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=5.7075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:254,230,1,0 0/0:.:255:254:1:0.39%:127,127,0,1 -Example1_ref 1222 . C A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=6.5317E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:483:1:0.21%:251,232,0,1 0/0:.:257:257:0:0%:129,128,0,0 -Example1_ref 1223 . A . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:256,236,0,0 0/0:.:260:260:0:0%:128,132,0,0 -Example1_ref 1224 . A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:252,236,0,0 0/0:.:260:260:0:0%:128,132,0,0 -Example1_ref 1225 . A C . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=1.202E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:253,236,0,0 0/0:.:260:258:2:0.77%:125,133,2,0 -Example1_ref 1226 . G T . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=6.5323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:249,236,1,0 0/0:.:258:258:0:0%:124,134,0,0 -Example1_ref 1227 . A G . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=3.4182E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:254,237,0,0 0/0:.:255:254:1:0.39%:123,131,0,1 -Example1_ref 1228 . A C . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=6.5992E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:254,234,0,1 0/0:.:252:252:0:0%:124,128,0,0 -Example1_ref 1229 . A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:256,235,0,0 0/0:.:251:251:0:0%:121,130,0,0 -Example1_ref 1230 . G . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:251,236,0,0 0/0:.:251:251:0:0%:120,131,0,0 -Example1_ref 1231 . C A . PASS DP=719;SS=0;SSC=0;GPV=1E0;SPV=5.6081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:247,228,0,1 0/0:.:243:241:1:0.41%:120,121,0,1 -Example1_ref 1232 . C A . PASS DP=735;SS=0;SSC=0;GPV=1E0;SPV=6.6122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:252,233,1,0 0/0:.:249:249:0:0%:122,127,0,0 -Example1_ref 1233 . T . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:250,236,0,0 0/0:.:251:251:0:0%:121,130,0,0 -Example1_ref 1234 . G . PASS DP=735;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:247,238,0,0 0/0:.:250:250:0:0%:118,132,0,0 -Example1_ref 1235 . A G . PASS DP=735;SS=0;SSC=0;GPV=1E0;SPV=6.5714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:1:0.21%:243,239,0,1 0/0:.:252:252:0:0%:118,134,0,0 -Example1_ref 1236 . A G . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=6.5541E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:240,244,1,0 0/0:.:255:255:0:0%:121,134,0,0 -Example1_ref 1237 . A C . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=6.6027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:481:1:0.21%:238,243,1,0 0/0:.:248:248:0:0%:115,133,0,0 -Example1_ref 1238 . A G . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=3.3875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:243,245,0,0 0/0:.:250:249:1:0.4%:118,131,0,1 -Example1_ref 1239 . G A . PASS DP=743;SS=0;SSC=0;GPV=1E0;SPV=6.6127E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:489:1:0.2%:244,245,1,0 0/0:.:252:251:0:0%:118,133,0,0 -Example1_ref 1240 . A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:240,248,0,0 0/0:.:260:260:0:0%:125,135,0,0 -Example1_ref 1241 . CATATA C . PASS DP=753;SS=0;SSC=0;GPV=1E0;SPV=7.2165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:490:2:0.41%:246,244,0,2 0/0:.:261:260:1:0.38%:128,132,0,1 -Example1_ref 1242 . A . PASS DP=753;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:245,246,0,0 0/0:.:262:261:0:0%:128,133,0,0 -Example1_ref 1243 . T A . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=6.5554E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:245,245,0,1 0/0:.:258:258:0:0%:125,133,0,0 -Example1_ref 1244 . A . PASS DP=763;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:246,252,0,0 0/0:.:265:265:0:0%:130,135,0,0 -Example1_ref 1245 . T . PASS DP=751;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:241,250,0,0 0/0:.:260:260:0:0%:124,136,0,0 -Example1_ref 1246 . A AAGAGAC . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=6.5726E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:488:1:0.2%:237,251,0,1 0/0:.:255:255:0:0%:120,135,0,0 -Example1_ref 1247 . A . PASS DP=743;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:238,248,0,0 0/0:.:257:257:0:0%:120,137,0,0 -Example1_ref 1248 . G GAGACA . PASS DP=733;SS=0;SSC=0;GPV=1E0;SPV=3.4516E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:233,247,0,0 0/0:.:253:252:1:0.4%:121,131,0,1 -Example1_ref 1249 . G GCTGT . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=5.6725E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:232,252,1,0 0/0:.:252:251:1:0.4%:116,135,1,0 -Example1_ref 1250 . A . PASS DP=727;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:240,242,0,0 0/0:.:245:245:0:0%:120,125,0,0 -Example1_ref 1251 . A . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:258,242,0,0 0/0:.:256:255:0:0%:127,128,0,0 -Example1_ref 1252 . C A . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=6.5952E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:251,240,1,0 0/0:.:254:254:0:0%:127,127,0,0 -Example1_ref 1253 . A . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:257,240,0,0 0/0:.:251:251:0:0%:124,127,0,0 -Example1_ref 1254 . TA T . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=6.6712E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:251,241,1,0 0/0:.:246:246:0:0%:120,126,0,0 -Example1_ref 1255 . A . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:253,247,0,0 0/0:.:252:252:0:0%:124,128,0,0 -Example1_ref 1256 . A AGAG . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=6.7154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:504:1:0.2%:255,249,0,1 0/0:.:247:247:0:0%:120,127,0,0 -Example1_ref 1257 . A . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:253,249,0,0 0/0:.:252:252:0:0%:121,131,0,0 -Example1_ref 1258 . CAG C . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=6.6402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:501:1:0.2%:252,249,1,0 0/0:.:255:254:0:0%:120,134,0,0 -Example1_ref 1259 . A . PASS DP=745;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:255,240,0,0 0/0:.:250:250:0:0%:121,129,0,0 -Example1_ref 1260 . GCTC G . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=5.4727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:253,236,0,1 0/0:.:238:237:1:0.42%:113,124,0,1 -Example1_ref 1261 . C A . PASS DP=733;SS=0;SSC=0;GPV=1E0;SPV=6.7213E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:255,236,0,1 0/0:.:241:240:0:0%:116,124,0,0 -Example1_ref 1262 . T . PASS DP=707;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:246,227,0,0 0/0:.:234:233:0:0%:111,122,0,0 -Example1_ref 1263 . C T . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=6.5937E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:481:1:0.21%:249,232,0,1 0/0:.:250:249:0:0%:120,129,0,0 -Example1_ref 1264 . A . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:255,241,0,0 0/0:.:253:253:0:0%:119,134,0,0 -Example1_ref 1265 . G . PASS DP=731;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:242,240,0,0 0/0:.:249:249:0:0%:115,134,0,0 -Example1_ref 1266 . A C . PASS DP=736;SS=0;SSC=0;GPV=1E0;SPV=3.3696E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:247,241,0,0 0/0:.:248:247:1:0.4%:110,137,1,0 -Example1_ref 1267 . G T . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=6.6257E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:239,245,0,1 0/0:.:247:247:0:0%:111,136,0,0 -Example1_ref 1268 . A G . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=3.3556E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:251,246,0,0 0/0:.:252:250:1:0.4%:112,138,1,0 -Example1_ref 1269 . CA C . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=5.6074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:481:1:0.21%:249,232,1,0 0/0:.:246:244:1:0.41%:112,132,1,0 -Example1_ref 1270 . A . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:254,237,0,0 0/0:.:251:250:0:0%:113,137,0,0 -Example1_ref 1271 . T . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:246,236,0,0 0/0:.:240:240:0:0%:112,128,0,0 -Example1_ref 1272 . C A . PASS DP=717;SS=0;SSC=0;GPV=1E0;SPV=6.6109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:473:1:0.21%:243,230,0,1 0/0:.:243:243:0:0%:107,136,0,0 -Example1_ref 1273 . T C . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=3.3924E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:248,237,0,0 0/0:.:249:248:1:0.4%:107,141,0,1 -Example1_ref 1274 . T C . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=3.3747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:481:0:0%:243,238,0,0 0/0:.:245:244:1:0.41%:106,138,1,0 -Example1_ref 1275 . T C . PASS DP=723;SS=0;SSC=0;GPV=1E0;SPV=6.5422E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:1:0.21%:244,228,0,1 0/0:.:250:250:0:0%:107,143,0,0 -Example1_ref 1276 . C A . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=4.2851E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:478:2:0.42%:249,229,0,2 0/0:.:253:253:0:0%:110,143,0,0 -Example1_ref 1277 . C . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:247,244,0,0 0/0:.:258:258:0:0%:110,148,0,0 -Example1_ref 1278 . A . PASS DP=757;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:257,244,0,0 0/0:.:256:256:0:0%:109,147,0,0 -Example1_ref 1279 . TA T . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=5.7245E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:485:1:0.21%:250,235,0,1 0/0:.:257:256:1:0.39%:110,146,0,1 -Example1_ref 1280 . A G . PASS DP=745;SS=0;SSC=0;GPV=1E0;SPV=6.5503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:248,239,0,1 0/0:.:257:257:0:0%:112,145,0,0 -Example1_ref 1281 . A . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:239,241,0,0 0/0:.:248:248:0:0%:103,145,0,0 -Example1_ref 1282 . A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:245,241,0,0 0/0:.:252:252:0:0%:104,148,0,0 -Example1_ref 1283 . C A . PASS DP=743;SS=0;SSC=0;GPV=1E0;SPV=3.432E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:245,243,0,0 0/0:.:255:254:1:0.39%:106,148,1,0 -Example1_ref 1284 . C A . PASS DP=723;SS=0;SSC=0;GPV=1E0;SPV=1.164E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:234,242,0,0 0/0:.:247:245:2:0.81%:100,145,2,0 -Example1_ref 1285 . A . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:247,238,0,0 0/0:.:245:245:0:0%:104,141,0,0 -Example1_ref 1286 . A . PASS DP=721;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:235,237,0,0 0/0:.:249:249:0:0%:103,146,0,0 -Example1_ref 1287 . C . PASS DP=727;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:242,238,0,0 0/0:.:247:247:0:0%:102,145,0,0 -Example1_ref 1288 . A AG . PASS DP=727;SS=0;SSC=0;GPV=1E0;SPV=5.7342E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:474:1:0.21%:235,239,1,0 0/0:.:252:251:1:0.4%:106,145,0,1 -Example1_ref 1289 . G A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=6.5352E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:463:1:0.22%:226,237,0,1 0/0:.:246:246:0:0%:102,144,0,0 -Example1_ref 1290 . G T . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=3.5714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:215,235,0,0 0/0:.:250:249:1:0.4%:101,148,1,0 -Example1_ref 1291 . T . PASS DP=703;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:222,234,0,0 0/0:.:247:247:0:0%:101,146,0,0 -Example1_ref 1292 . G . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:215,234,0,0 0/0:.:244:244:0:0%:97,147,0,0 -Example1_ref 1293 . G . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:212,236,0,0 0/0:.:246:246:0:0%:98,148,0,0 -Example1_ref 1294 . A . PASS DP=721;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:225,242,0,0 0/0:.:254:254:0:0%:102,152,0,0 -Example1_ref 1295 . T . PASS DP=699;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:217,237,0,0 0/0:.:245:245:0:0%:98,147,0,0 -Example1_ref 1296 . C A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=6.4903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:465:1:0.21%:223,242,1,0 0/0:.:252:252:0:0%:104,148,0,0 -Example1_ref 1297 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:226,241,0,0 0/0:.:257:257:0:0%:107,150,0,0 -Example1_ref 1298 . G T . PASS DP=751;SS=0;SSC=0;GPV=1E0;SPV=5.8213E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:245,239,1,0 0/0:.:266:264:1:0.38%:116,148,1,0 -Example1_ref 1299 . C A . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=6.4628E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:244,241,0,1 0/0:.:266:266:0:0%:116,150,0,0 -Example1_ref 1300 . C T . PASS DP=756;SS=0;SSC=0;GPV=1E0;SPV=6.4683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:488:1:0.2%:242,246,1,0 0/0:.:267:267:0:0%:113,154,0,0 -Example1_ref 1301 . A T . PASS DP=773;SS=0;SSC=0;GPV=1E0;SPV=6.4424E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:248,249,1,0 0/0:.:275:275:0:0%:119,156,0,0 -Example1_ref 1302 . T . PASS DP=767;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:248,247,0,0 0/0:.:272:272:0:0%:117,155,0,0 -Example1_ref 1303 . A T . PASS DP=769;SS=0;SSC=0;GPV=1E0;SPV=3.5417E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:0:0%:245,251,0,0 0/0:.:272:271:1:0.37%:117,154,0,1 -Example1_ref 1304 . G . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:233,261,0,0 0/0:.:276:276:0:0%:114,162,0,0 -Example1_ref 1305 . A . PASS DP=767;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:233,259,0,0 0/0:.:275:275:0:0%:112,163,0,0 -Example1_ref 1306 . GA G . PASS DP=771;SS=0;SSC=0;GPV=1E0;SPV=6.3506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:224,264,1,0 0/0:.:281:281:0:0%:116,165,0,0 -Example1_ref 1307 . A ATC . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=3.5734E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:464:0:0%:222,242,0,0 0/0:.:258:257:1:0.39%:114,143,1,0 -Example1_ref 1308 . T C . PASS DP=705;SS=0;SSC=0;GPV=1E0;SPV=6.4347E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:452:1:0.22%:218,234,0,1 0/0:.:252:251:0:0%:110,141,0,0 -Example1_ref 1309 . G A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=4.0927E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:446:2:0.45%:208,238,0,2 0/0:.:252:252:0:0%:107,145,0,0 -Example1_ref 1310 . G T . PASS DP=705;SS=0;SSC=0;GPV=1E0;SPV=7.3883E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:449:2:0.44%:209,240,2,0 0/0:.:254:253:1:0.39%:104,149,1,0 -Example1_ref 1311 . C . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:215,234,0,0 0/0:.:259:259:0:0%:113,146,0,0 -Example1_ref 1312 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:460:0:0%:216,244,0,0 0/0:.:259:259:0:0%:112,147,0,0 -Example1_ref 1313 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:214,241,0,0 0/0:.:255:255:0:0%:108,147,0,0 -Example1_ref 1314 . T . PASS DP=703;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:211,239,0,0 0/0:.:253:253:0:0%:109,144,0,0 -Example1_ref 1315 . A . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:211,238,0,0 0/0:.:248:248:0:0%:104,144,0,0 -Example1_ref 1316 . G . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:214,238,0,0 0/0:.:252:252:0:0%:105,147,0,0 -Example1_ref 1317 . A . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:210,233,0,0 0/0:.:246:246:0:0%:103,143,0,0 -Example1_ref 1318 . T . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:212,233,0,0 0/0:.:250:250:0:0%:108,142,0,0 -Example1_ref 1319 . G . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:207,238,0,0 0/0:.:250:250:0:0%:104,146,0,0 -Example1_ref 1320 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:207,235,0,0 0/0:.:252:252:0:0%:107,145,0,0 -Example1_ref 1321 . A T . PASS DP=699;SS=0;SSC=0;GPV=1E0;SPV=3.6195E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:208,238,0,0 0/0:.:253:252:1:0.4%:106,146,1,0 -Example1_ref 1322 . G GA . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=5.9185E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:440:1:0.23%:204,236,1,0 0/0:.:250:248:1:0.4%:103,145,1,0 -Example1_ref 1323 . A . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:0:0%:211,231,0,0 0/0:.:254:254:0:0%:112,142,0,0 -Example1_ref 1324 . G . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:0:0%:203,231,0,0 0/0:.:247:247:0:0%:104,143,0,0 -Example1_ref 1325 . C . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:432:0:0%:206,226,0,0 0/0:.:244:244:0:0%:106,138,0,0 -Example1_ref 1326 . C . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:426:0:0%:198,228,0,0 0/0:.:246:246:0:0%:107,139,0,0 -Example1_ref 1327 . A AG . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=6.3781E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:206,235,0,1 0/0:.:251:251:0:0%:108,143,0,0 -Example1_ref 1328 . G . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:199,234,0,0 0/0:.:250:250:0:0%:106,144,0,0 -Example1_ref 1329 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:202,241,0,0 0/0:.:249:249:0:0%:105,144,0,0 -Example1_ref 1330 . A . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:203,242,0,0 0/0:.:252:252:0:0%:106,146,0,0 -Example1_ref 1331 . C A . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=6.411E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:199,243,1,0 0/0:.:248:248:0:0%:105,143,0,0 -Example1_ref 1332 . A . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:202,239,0,0 0/0:.:242:242:0:0%:105,137,0,0 -Example1_ref 1333 . A . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:206,240,0,0 0/0:.:245:245:0:0%:104,141,0,0 -Example1_ref 1334 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:202,235,0,0 0/0:.:245:245:0:0%:105,140,0,0 -Example1_ref 1335 . T . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:201,232,0,0 0/0:.:244:244:0:0%:103,141,0,0 -Example1_ref 1336 . C T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=6.4159E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:199,235,1,0 0/0:.:243:243:0:0%:101,142,0,0 -Example1_ref 1337 . G . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:198,239,0,0 0/0:.:245:245:0:0%:103,142,0,0 -Example1_ref 1338 . A . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:203,237,0,0 0/0:.:249:249:0:0%:107,142,0,0 -Example1_ref 1339 . A . PASS DP=699;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:207,240,0,0 0/0:.:252:251:0:0%:108,143,0,0 -Example1_ref 1340 . C . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:207,236,0,0 0/0:.:252:252:0:0%:108,144,0,0 -Example1_ref 1341 . A . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:209,235,0,0 0/0:.:253:253:0:0%:107,146,0,0 -Example1_ref 1342 . T . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:204,234,0,0 0/0:.:251:251:0:0%:105,146,0,0 -Example1_ref 1343 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:201,227,0,0 0/0:.:250:250:0:0%:105,145,0,0 -Example1_ref 1344 . G C . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=6.3001E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:423:1:0.24%:194,229,1,0 0/0:.:249:249:0:0%:103,146,0,0 -Example1_ref 1345 . A C . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=3.7444E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:194,227,0,0 0/0:.:252:251:1:0.4%:104,147,0,1 -Example1_ref 1346 . G T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=6.2798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:421:1:0.24%:192,229,0,1 0/0:.:250:250:0:0%:102,148,0,0 -Example1_ref 1347 . C . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:198,227,0,0 0/0:.:252:252:0:0%:105,147,0,0 -Example1_ref 1348 . A G . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=3.7258E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:198,223,0,0 0/0:.:250:249:1:0.4%:105,144,1,0 -Example1_ref 1349 . G . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:200,225,0,0 0/0:.:248:248:0:0%:105,143,0,0 -Example1_ref 1350 . A T . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=5.9641E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:203,225,0,1 0/0:.:246:245:1:0.41%:103,142,0,1 -Example1_ref 1351 . C A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=3.6215E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:205,223,0,0 0/0:.:243:242:1:0.41%:105,137,0,1 -Example1_ref 1352 . C . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:426:0:0%:201,225,0,0 0/0:.:244:244:0:0%:102,142,0,0 -Example1_ref 1353 . A . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:202,227,0,0 0/0:.:243:243:0:0%:105,138,0,0 -Example1_ref 1354 . A . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:201,227,0,0 0/0:.:245:245:0:0%:105,140,0,0 -Example1_ref 1355 . G . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:200,227,0,0 0/0:.:250:250:0:0%:109,141,0,0 -Example1_ref 1356 . A T . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1.3306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:202,229,0,0 0/0:.:248:246:2:0.81%:108,138,0,2 -Example1_ref 1357 . A . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:203,230,0,0 0/0:.:250:250:0:0%:110,140,0,0 -Example1_ref 1358 . C . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:205,223,0,0 0/0:.:246:246:0:0%:109,137,0,0 -Example1_ref 1359 . A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:0:0%:205,219,0,0 0/0:.:246:246:0:0%:108,138,0,0 -Example1_ref 1360 . A T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=6.3676E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:1:0.23%:207,232,1,0 0/0:.:251:251:0:0%:108,143,0,0 -Example1_ref 1361 . G . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:202,234,0,0 0/0:.:246:246:0:0%:101,145,0,0 -Example1_ref 1362 . A . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:202,231,0,0 0/0:.:246:246:0:0%:102,144,0,0 -Example1_ref 1363 . T . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:203,226,0,0 0/0:.:237:237:0:0%:98,139,0,0 -Example1_ref 1364 . G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:202,221,0,0 0/0:.:237:237:0:0%:98,139,0,0 -Example1_ref 1365 . G A . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=5.9487E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:199,226,0,1 0/0:.:243:242:1:0.41%:100,142,1,0 -Example1_ref 1366 . G T . PASS DP=651;SS=0;SSC=0;GPV=1E0;SPV=6.4154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:416:1:0.24%:193,223,1,0 0/0:.:233:233:0:0%:93,140,0,0 -Example1_ref 1367 . G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:196,226,0,0 0/0:.:232:232:0:0%:93,139,0,0 -Example1_ref 1368 . A . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:430:0:0%:202,228,0,0 0/0:.:241:241:0:0%:99,142,0,0 -Example1_ref 1369 . A . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:205,228,0,0 0/0:.:242:242:0:0%:98,144,0,0 -Example1_ref 1370 . C CAGA . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=5.9403E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:435:1:0.23%:210,225,0,1 0/0:.:248:247:1:0.4%:106,141,0,1 -Example1_ref 1371 . C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:208,224,0,0 0/0:.:246:246:0:0%:102,144,0,0 -Example1_ref 1372 . T . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:210,228,0,0 0/0:.:247:247:0:0%:104,143,0,0 -Example1_ref 1373 . C . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:210,219,0,0 0/0:.:250:250:0:0%:106,144,0,0 -Example1_ref 1374 . A . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:214,228,0,0 0/0:.:247:247:0:0%:106,141,0,0 -Example1_ref 1375 . A . PASS DP=699;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:0:0%:211,230,0,0 0/0:.:257:256:0:0%:109,147,0,0 -Example1_ref 1376 . T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:214,226,0,0 0/0:.:251:251:0:0%:107,144,0,0 -Example1_ref 1377 . C A . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=6.3271E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:212,228,1,0 0/0:.:256:256:0:0%:108,148,0,0 -Example1_ref 1378 . A G . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=6.361E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:213,230,0,1 0/0:.:254:254:0:0%:107,147,0,0 -Example1_ref 1379 . T . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:215,218,0,0 0/0:.:250:250:0:0%:106,144,0,0 -Example1_ref 1380 . C . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:225,225,0,0 0/0:.:256:256:0:0%:111,145,0,0 -Example1_ref 1381 . T C . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=5.926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:453:1:0.22%:223,230,1,0 0/0:.:257:256:1:0.39%:109,147,0,1 -Example1_ref 1382 . A . PASS DP=719;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:226,233,0,0 0/0:.:260:260:0:0%:110,150,0,0 -Example1_ref 1383 . T . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:223,231,0,0 0/0:.:261:261:0:0%:112,149,0,0 -Example1_ref 1384 . A AAGAGAC . PASS DP=707;SS=0;SSC=0;GPV=1E0;SPV=5.9521E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:226,223,0,1 0/0:.:257:256:1:0.39%:111,145,0,1 -Example1_ref 1385 . A T . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=6.4067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:1:0.22%:230,229,1,0 0/0:.:258:258:0:0%:113,145,0,0 -Example1_ref 1386 . T A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=3.6544E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:232,216,0,0 0/0:.:258:257:1:0.39%:111,146,1,0 -Example1_ref 1387 . C . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:235,229,0,0 0/0:.:264:264:0:0%:117,147,0,0 -Example1_ref 1388 . C . PASS DP=721;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:227,224,0,0 0/0:.:270:269:0:0%:120,149,0,0 -Example1_ref 1389 . A . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:237,226,0,0 0/0:.:263:263:0:0%:123,140,0,0 -Example1_ref 1390 . A . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:234,223,0,0 0/0:.:259:259:0:0%:118,141,0,0 -Example1_ref 1391 . T C . PASS DP=705;SS=0;SSC=0;GPV=1E0;SPV=6.3404E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:227,219,0,1 0/0:.:258:258:0:0%:120,138,0,0 -Example1_ref 1392 . A . PASS DP=707;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:230,219,0,0 0/0:.:258:258:0:0%:117,141,0,0 -Example1_ref 1393 . T TAAGAGACAG . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=3.6761E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:0:0%:231,218,0,0 0/0:.:261:260:1:0.38%:118,142,0,1 -Example1_ref 1394 . G T . PASS DP=719;SS=0;SSC=0;GPV=1E0;SPV=5.9986E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:454:1:0.22%:232,222,1,0 0/0:.:264:263:1:0.38%:119,144,1,0 -Example1_ref 1395 . C . PASS DP=707;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:230,216,0,0 0/0:.:261:261:0:0%:120,141,0,0 -Example1_ref 1396 . T . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:225,214,0,0 0/0:.:255:255:0:0%:114,141,0,0 -Example1_ref 1397 . T A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=6.2894E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:438:1:0.23%:228,210,0,1 0/0:.:259:259:0:0%:118,141,0,0 -Example1_ref 1398 . G . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:226,229,0,0 0/0:.:267:267:0:0%:119,148,0,0 -Example1_ref 1399 . G T . PASS DP=705;SS=0;SSC=0;GPV=1E0;SPV=4.0529E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:447:2:0.45%:224,223,2,0 0/0:.:256:256:0:0%:112,144,0,0 -Example1_ref 1400 . G C . PASS DP=717;SS=0;SSC=0;GPV=1E0;SPV=6.3268E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:452:1:0.22%:224,228,1,0 0/0:.:263:263:0:0%:117,146,0,0 -Example1_ref 1401 . C . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:230,229,0,0 0/0:.:263:263:0:0%:114,149,0,0 -Example1_ref 1402 . A . PASS DP=729;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:227,228,0,0 0/0:.:274:274:0:0%:123,151,0,0 -Example1_ref 1403 . G . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:230,224,0,0 0/0:.:274:273:0:0%:122,151,0,0 -Example1_ref 1404 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:224,230,0,0 0/0:.:270:270:0:0%:119,151,0,0 -Example1_ref 1405 . A . PASS DP=731;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:230,231,0,0 0/0:.:270:270:0:0%:120,150,0,0 -Example1_ref 1406 . G A . PASS DP=731;SS=0;SSC=0;GPV=1E0;SPV=3.6936E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:233,228,0,0 0/0:.:270:269:1:0.37%:123,146,0,1 -Example1_ref 1407 . G T . PASS DP=728;SS=0;SSC=0;GPV=1E0;SPV=6.3462E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:461:1:0.22%:231,230,1,0 0/0:.:266:266:0:0%:114,152,0,0 -Example1_ref 1408 . A . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:237,231,0,0 0/0:.:269:269:0:0%:116,153,0,0 -Example1_ref 1409 . A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:236,233,0,0 0/0:.:271:271:0:0%:118,153,0,0 -Example1_ref 1410 . A . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:471:0:0%:237,234,0,0 0/0:.:268:268:0:0%:116,152,0,0 -Example1_ref 1411 . C . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:239,234,0,0 0/0:.:269:269:0:0%:116,153,0,0 -Example1_ref 1412 . A . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:238,230,0,0 0/0:.:272:272:0:0%:118,154,0,0 -Example1_ref 1413 . G . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:237,232,0,0 0/0:.:268:268:0:0%:116,152,0,0 -Example1_ref 1414 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:233,232,0,0 0/0:.:267:267:0:0%:116,151,0,0 -Example1_ref 1415 . A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:241,231,0,0 0/0:.:266:266:0:0%:115,151,0,0 -Example1_ref 1416 . G A . PASS DP=741;SS=0;SSC=0;GPV=1E0;SPV=5.9113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:473:1:0.21%:238,235,0,1 0/0:.:267:266:1:0.37%:113,153,1,0 -Example1_ref 1417 . C A . PASS DP=729;SS=0;SSC=0;GPV=1E0;SPV=3.6488E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:234,229,0,0 0/0:.:266:265:1:0.38%:114,151,0,1 -Example1_ref 1418 . GA G . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=4.0845E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:466:2:0.43%:233,233,2,0 0/0:.:264:264:0:0%:115,149,0,0 -Example1_ref 1419 . A . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:468:0:0%:236,232,0,0 0/0:.:269:269:0:0%:116,153,0,0 -Example1_ref 1420 . T C . PASS DP=745;SS=0;SSC=0;GPV=1E0;SPV=3.6156E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:246,229,0,0 0/0:.:270:268:1:0.37%:116,152,0,1 -Example1_ref 1421 . G A . PASS DP=745;SS=0;SSC=0;GPV=1E0;SPV=5.9099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:244,231,0,1 0/0:.:269:267:1:0.37%:115,152,0,1 -Example1_ref 1422 . A . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:244,231,0,0 0/0:.:274:274:0:0%:120,154,0,0 -Example1_ref 1423 . C A . PASS DP=738;SS=0;SSC=0;GPV=1E0;SPV=1.296E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:249,223,0,0 0/0:.:266:264:2:0.75%:113,151,1,1 -Example1_ref 1424 . C . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:244,225,0,0 0/0:.:268:268:0:0%:115,153,0,0 -Example1_ref 1425 . G . PASS DP=749;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:251,227,0,0 0/0:.:271:271:0:0%:119,152,0,0 -Example1_ref 1426 . G T . PASS DP=751;SS=0;SSC=0;GPV=1E0;SPV=6.3733E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:477:1:0.21%:250,227,1,0 0/0:.:273:272:0:0%:117,155,0,0 -Example1_ref 1427 . A . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:251,231,0,0 0/0:.:272:272:0:0%:117,155,0,0 -Example1_ref 1428 . C . PASS DP=741;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:247,225,0,0 0/0:.:269:269:0:0%:116,153,0,0 -Example1_ref 1429 . T . PASS DP=729;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:244,221,0,0 0/0:.:264:264:0:0%:114,150,0,0 -Example1_ref 1430 . G . PASS DP=743;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:252,226,0,0 0/0:.:265:265:0:0%:115,150,0,0 -Example1_ref 1431 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:245,222,0,0 0/0:.:265:265:0:0%:115,150,0,0 -Example1_ref 1432 . G . PASS DP=729;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:466:0:0%:244,222,0,0 0/0:.:263:263:0:0%:113,150,0,0 -Example1_ref 1433 . C A . PASS DP=729;SS=0;SSC=0;GPV=1E0;SPV=6.4746E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:471:1:0.21%:246,225,1,0 0/0:.:257:257:0:0%:110,147,0,0 -Example1_ref 1434 . A T . PASS DP=731;SS=0;SSC=0;GPV=1E0;SPV=6.4384E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:469:1:0.21%:246,223,0,1 0/0:.:260:260:0:0%:112,148,0,0 -Example1_ref 1435 . A G . PASS DP=733;SS=0;SSC=0;GPV=1E0;SPV=3.5519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:249,223,0,0 0/0:.:261:259:1:0.38%:111,148,1,0 -Example1_ref 1436 . GCT G . PASS DP=723;SS=0;SSC=0;GPV=1E0;SPV=3.5131E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:247,222,0,0 0/0:.:254:253:1:0.39%:111,142,0,1 -Example1_ref 1437 . C A . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=6.4499E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:253,222,0,1 0/0:.:263:262:0:0%:117,145,0,0 -Example1_ref 1438 . T A . PASS DP=741;SS=0;SSC=0;GPV=1E0;SPV=3.527E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:253,226,0,0 0/0:.:262:260:1:0.38%:117,143,0,1 -Example1_ref 1439 . A . PASS DP=727;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:245,220,0,0 0/0:.:262:262:0:0%:115,147,0,0 -Example1_ref 1440 . C . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:240,220,0,0 0/0:.:256:256:0:0%:111,145,0,0 -Example1_ref 1441 . A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:237,217,0,0 0/0:.:258:258:0:0%:112,146,0,0 -Example1_ref 1442 . G . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:0:0%:238,219,0,0 0/0:.:258:258:0:0%:113,145,0,0 -Example1_ref 1443 . A . PASS DP=709;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:238,219,0,0 0/0:.:252:252:0:0%:108,144,0,0 -Example1_ref 1444 . A ACTGTCTC . PASS DP=709;SS=0;SSC=0;GPV=1E0;SPV=6.4689E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:1:0.22%:242,215,1,0 0/0:.:250:250:0:0%:109,141,0,0 -Example1_ref 1445 . T A . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=3.5735E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:0:0%:230,207,0,0 0/0:.:243:242:1:0.41%:109,133,1,0 -Example1_ref 1446 . C A . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=6.4286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:440:1:0.23%:235,205,0,1 0/0:.:245:245:0:0%:110,135,0,0 -Example1_ref 1447 . C A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=6.4012E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:433:1:0.23%:234,199,0,1 0/0:.:244:244:0:0%:109,135,0,0 -Example1_ref 1448 . G . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:239,207,0,0 0/0:.:249:249:0:0%:111,138,0,0 -Example1_ref 1449 . A T . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=6.3845E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:238,206,0,1 0/0:.:252:252:0:0%:111,141,0,0 -Example1_ref 1450 . CA C . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=5.9589E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:238,196,0,1 0/0:.:249:248:1:0.4%:110,138,0,1 -Example1_ref 1451 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:240,206,0,0 0/0:.:246:246:0:0%:109,137,0,0 -Example1_ref 1452 . A G . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=6.4203E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:237,205,0,1 0/0:.:247:247:0:0%:110,137,0,0 -Example1_ref 1453 . T . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:258,202,0,0 0/0:.:252:252:0:0%:118,134,0,0 -Example1_ref 1454 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:261,208,0,0 0/0:.:251:251:0:0%:115,136,0,0 -Example1_ref 1455 . T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:246,197,0,0 0/0:.:248:248:0:0%:115,133,0,0 -Example1_ref 1456 . C T . PASS DP=703;SS=0;SSC=0;GPV=1E0;SPV=6.5149E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:258,199,0,1 0/0:.:245:245:0:0%:114,131,0,0 -Example1_ref 1457 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:255,203,0,0 0/0:.:246:246:0:0%:114,132,0,0 -Example1_ref 1458 . A C . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=3.4874E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:260,205,0,0 0/0:.:249:248:1:0.4%:113,135,1,0 -Example1_ref 1459 . G . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:254,201,0,0 0/0:.:242:242:0:0%:107,135,0,0 -Example1_ref 1460 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:253,205,0,0 0/0:.:246:246:0:0%:111,135,0,0 -Example1_ref 1461 . C A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=6.4884E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:249,199,1,0 0/0:.:243:243:0:0%:109,134,0,0 -Example1_ref 1462 . T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:246,189,0,0 0/0:.:227:227:0:0%:109,118,0,0 -Example1_ref 1463 . G . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:252,195,0,0 0/0:.:226:226:0:0%:106,120,0,0 -Example1_ref 1464 . A . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:247,198,0,0 0/0:.:234:234:0:0%:111,123,0,0 -Example1_ref 1465 . A G . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=6.5607E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:453:1:0.22%:252,201,1,0 0/0:.:238:238:0:0%:115,123,0,0 -Example1_ref 1466 . C . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:0:0%:248,197,0,0 0/0:.:234:234:0:0%:112,122,0,0 -Example1_ref 1467 . A . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:248,194,0,0 0/0:.:233:233:0:0%:112,121,0,0 -Example1_ref 1468 . A . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:250,194,0,0 0/0:.:235:235:0:0%:115,120,0,0 -Example1_ref 1469 . C A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=3.4328E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:249,191,0,0 0/0:.:230:229:1:0.43%:113,116,1,0 -Example1_ref 1470 . A AACTGTCTCTTAT . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=6.5192E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:246,195,1,0 0/0:.:236:236:0:0%:113,123,0,0 -Example1_ref 1471 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:0:0%:245,194,0,0 0/0:.:236:236:0:0%:112,124,0,0 -Example1_ref 1472 . A C . PASS DP=663;SS=0;SSC=0;GPV=1E0;SPV=3.4389E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:242,193,0,0 0/0:.:228:227:1:0.44%:107,120,1,0 -Example1_ref 1473 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:245,196,0,0 0/0:.:235:235:0:0%:113,122,0,0 -Example1_ref 1474 . C CA . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=3.4375E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:246,195,0,0 0/0:.:232:230:1:0.43%:110,120,1,0 -Example1_ref 1475 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:246,199,0,0 0/0:.:233:233:0:0%:112,121,0,0 -Example1_ref 1476 . T . PASS DP=663;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:240,195,0,0 0/0:.:228:228:0:0%:110,118,0,0 -Example1_ref 1477 . C . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:241,196,0,0 0/0:.:224:224:0:0%:104,120,0,0 -Example1_ref 1478 . A . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:237,196,0,0 0/0:.:228:228:0:0%:108,120,0,0 -Example1_ref 1479 . G . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:238,199,0,0 0/0:.:221:221:0:0%:102,119,0,0 -Example1_ref 1480 . A . PASS DP=663;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:239,201,0,0 0/0:.:223:223:0:0%:103,120,0,0 -Example1_ref 1481 . GA G . PASS DP=655;SS=0;SSC=0;GPV=1E0;SPV=3.3435E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:231,205,0,0 0/0:.:219:218:1:0.46%:98,120,1,0 -Example1_ref 1482 . A . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:240,203,0,0 0/0:.:226:225:0:0%:105,120,0,0 -Example1_ref 1483 . C . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:240,200,0,0 0/0:.:226:226:0:0%:107,119,0,0 -Example1_ref 1484 . A T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=5.6058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:438:1:0.23%:243,195,1,0 0/0:.:223:222:1:0.45%:107,115,1,0 -Example1_ref 1485 . GA G . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=4.475E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:437:2:0.46%:244,193,0,2 0/0:.:217:217:0:0%:102,115,0,0 -Example1_ref 1486 . A T . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=3.2885E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:449:0:0%:253,196,0,0 0/0:.:220:219:1:0.45%:103,116,1,0 -Example1_ref 1487 . C . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:0:0%:238,196,0,0 0/0:.:210:210:0:0%:101,109,0,0 -Example1_ref 1488 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:231,190,0,0 0/0:.:207:207:0:0%:97,110,0,0 -Example1_ref 1489 . A . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:237,195,0,0 0/0:.:213:213:0:0%:101,112,0,0 -Example1_ref 1490 . A . PASS DP=637;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:235,194,0,0 0/0:.:208:208:0:0%:96,112,0,0 -Example1_ref 1491 . A . PASS DP=651;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:238,198,0,0 0/0:.:215:215:0:0%:99,116,0,0 -Example1_ref 1492 . C . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:234,197,0,0 0/0:.:211:211:0:0%:97,114,0,0 -Example1_ref 1493 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:238,195,0,0 0/0:.:221:220:0:0%:101,119,0,0 -Example1_ref 1494 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:233,182,0,0 0/0:.:211:211:0:0%:98,113,0,0 -Example1_ref 1495 . G . PASS DP=625;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:228,190,0,0 0/0:.:207:207:0:0%:94,113,0,0 -Example1_ref 1496 . A AGCT . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=3.3226E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:234,180,0,0 0/0:.:206:205:1:0.49%:96,109,1,0 -Example1_ref 1497 . G A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=6.7893E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:405:1:0.25%:223,182,1,0 0/0:.:192:192:0:0%:83,109,0,0 -Example1_ref 1498 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:241,181,0,0 0/0:.:200:200:0:0%:96,104,0,0 -Example1_ref 1499 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:407:0:0%:235,172,0,0 0/0:.:195:195:0:0%:92,103,0,0 -Example1_ref 1500 . T A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=6.7343E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:397:1:0.25%:227,170,0,1 0/0:.:193:193:0:0%:90,103,0,0 -Example1_ref 1501 . C A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=3.2323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:230,172,0,0 0/0:.:192:191:1:0.52%:87,104,1,0 -Example1_ref 1502 . A . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:237,179,0,0 0/0:.:195:195:0:0%:91,104,0,0 -Example1_ref 1503 . A C . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=6.7585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:416:1:0.24%:236,180,1,0 0/0:.:200:200:0:0%:96,104,0,0 -Example1_ref 1504 . C . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:233,177,0,0 0/0:.:196:196:0:0%:95,101,0,0 -Example1_ref 1505 . G A . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=6.7169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:223,177,1,0 0/0:.:196:196:0:0%:92,104,0,0 -Example1_ref 1506 . A . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:230,178,0,0 0/0:.:197:197:0:0%:93,104,0,0 -Example1_ref 1507 . C A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=3.1911E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:226,173,0,0 0/0:.:187:186:1:0.53%:90,96,1,0 -Example1_ref 1508 . A AAG . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=6.7388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:404:1:0.25%:225,179,1,0 0/0:.:196:196:0:0%:93,103,0,0 -Example1_ref 1509 . A G . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=4.5305E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:400:2:0.5%:227,173,0,2 0/0:.:195:195:0:0%:93,102,0,0 -Example1_ref 1510 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:395:395:0:0%:223,172,0,0 0/0:.:191:191:0:0%:90,101,0,0 -Example1_ref 1511 . A C . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=6.7279E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:402:1:0.25%:225,177,0,1 0/0:.:196:196:0:0%:92,104,0,0 -Example1_ref 1512 . A G . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=6.7323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:409:1:0.24%:231,178,1,0 0/0:.:199:199:0:0%:95,104,0,0 -Example1_ref 1513 . G T . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=3.2192E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:216,180,0,0 0/0:.:188:187:1:0.53%:84,103,0,1 -Example1_ref 1514 . A . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:407:0:0%:228,179,0,0 0/0:.:196:196:0:0%:92,104,0,0 -Example1_ref 1515 . A . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:229,179,0,0 0/0:.:196:196:0:0%:93,103,0,0 -Example1_ref 1516 . A G . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=3.202E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:233,181,0,0 0/0:.:195:194:1:0.51%:92,102,1,0 -Example1_ref 1517 . C G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=3.2007E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:231,179,0,0 0/0:.:194:192:1:0.52%:90,102,1,0 -Example1_ref 1518 . A AC . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=6.7887E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:407:1:0.25%:230,177,1,0 0/0:.:194:193:0:0%:93,100,0,0 -Example1_ref 1519 . A . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:233,171,0,0 0/0:.:193:193:0:0%:93,100,0,0 -Example1_ref 1520 . G T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=3.1771E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:219,174,0,0 0/0:.:183:182:1:0.55%:85,97,1,0 -Example1_ref 1521 . G A . PASS DP=565;SS=0;SSC=0;GPV=1E0;SPV=3.2092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:211,172,0,0 0/0:.:182:180:1:0.55%:82,98,1,0 -Example1_ref 1522 . C A . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=3.157E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:216,172,0,0 0/0:.:179:178:1:0.56%:79,99,1,0 -Example1_ref 1523 . A . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:398:0:0%:226,172,0,0 0/0:.:187:187:0:0%:89,98,0,0 -Example1_ref 1524 . G T . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=5.2818E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:390:1:0.26%:220,170,1,0 0/0:.:178:177:1:0.56%:80,97,0,1 -Example1_ref 1525 . T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:218,168,0,0 0/0:.:180:180:0:0%:84,96,0,0 -Example1_ref 1526 . C . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:217,169,0,0 0/0:.:180:180:0:0%:83,97,0,0 -Example1_ref 1527 . A . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:0:0%:220,178,0,0 0/0:.:186:186:0:0%:87,99,0,0 -Example1_ref 1528 . A C . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=3.1641E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:404:0:0%:225,179,0,0 0/0:.:187:186:1:0.53%:86,100,1,0 -Example1_ref 1529 . C . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:392:392:0:0%:218,174,0,0 0/0:.:178:178:0:0%:82,96,0,0 -Example1_ref 1530 . C . PASS DP=565;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:214,173,0,0 0/0:.:178:178:0:0%:82,96,0,0 -Example1_ref 1531 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:220,176,0,0 0/0:.:180:180:0:0%:85,95,0,0 -Example1_ref 1532 . C A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=4.738E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:385:2:0.52%:213,172,0,2 0/0:.:175:175:0:0%:80,95,0,0 -Example1_ref 1533 . C A . PASS DP=553;SS=0;SSC=0;GPV=1E0;SPV=6.8535E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:1:0.26%:206,172,1,0 0/0:.:174:174:0:0%:77,97,0,0 -Example1_ref 1534 . C A . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=6.9009E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:1:0.26%:211,171,0,1 0/0:.:172:172:0:0%:78,94,0,0 -Example1_ref 1535 . G A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=6.8953E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:381:1:0.26%:207,174,1,0 0/0:.:172:172:0:0%:78,94,0,0 -Example1_ref 1536 . C A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=5.2186E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:212,173,0,1 0/0:.:172:171:1:0.58%:80,91,1,0 -Example1_ref 1537 . C . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:210,176,0,0 0/0:.:174:174:0:0%:80,94,0,0 -Example1_ref 1538 . A . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:388:0:0%:213,175,0,0 0/0:.:180:180:0:0%:84,96,0,0 -Example1_ref 1539 . A G . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=3.169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:212,176,0,0 0/0:.:180:179:1:0.56%:83,96,0,1 -Example1_ref 1540 . T C . PASS DP=541;SS=0;SSC=0;GPV=1E0;SPV=3.1423E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:201,170,0,0 0/0:.:170:169:1:0.59%:76,93,1,0 -Example1_ref 1541 . C . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:207,166,0,0 0/0:.:170:170:0:0%:79,91,0,0 -Example1_ref 1542 . C . PASS DP=559;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:210,171,0,0 0/0:.:178:178:0:0%:81,97,0,0 -Example1_ref 1543 . T A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=6.8478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:208,169,1,0 0/0:.:174:174:0:0%:80,94,0,0 -Example1_ref 1544 . A . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:211,171,0,0 0/0:.:174:174:0:0%:78,96,0,0 -Example1_ref 1545 . C A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=6.9022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:380:1:0.26%:210,170,0,1 0/0:.:171:171:0:0%:78,93,0,0 -Example1_ref 1546 . A G . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=3.0824E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:215,171,0,0 0/0:.:172:171:1:0.58%:79,92,0,1 -Example1_ref 1547 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:212,171,0,0 0/0:.:175:175:0:0%:80,95,0,0 -Example1_ref 1548 . A . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:209,175,0,0 0/0:.:163:163:0:0%:74,89,0,0 -Example1_ref 1549 . C CCTGTCTCTT . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.0018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:382:1:0.26%:208,174,1,0 0/0:.:164:164:0:0%:74,90,0,0 -Example1_ref 1550 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:211,163,0,0 0/0:.:160:160:0:0%:76,84,0,0 -Example1_ref 1551 . G C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.0802E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:210,160,1,0 0/0:.:153:153:0:0%:71,82,0,0 -Example1_ref 1552 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:206,162,0,0 0/0:.:154:154:0:0%:73,81,0,0 -Example1_ref 1553 . A . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:212,164,0,0 0/0:.:155:155:0:0%:73,82,0,0 -Example1_ref 1554 . C . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:207,165,0,0 0/0:.:152:152:0:0%:71,81,0,0 -Example1_ref 1555 . A . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:210,158,0,0 0/0:.:149:149:0:0%:71,78,0,0 -Example1_ref 1556 . A . PASS DP=525;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:213,160,0,0 0/0:.:152:152:0:0%:73,79,0,0 -Example1_ref 1557 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:211,163,0,0 0/0:.:150:150:0:0%:73,77,0,0 -Example1_ref 1558 . C T . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=7.1203E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:203,157,1,0 0/0:.:148:146:0:0%:70,76,0,0 -Example1_ref 1559 . C CCTGTCTCTTAT . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=7.0841E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:195,166,1,0 0/0:.:149:149:0:0%:67,82,0,0 -Example1_ref 1560 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:202,168,0,0 0/0:.:149:149:0:0%:68,81,0,0 -Example1_ref 1561 . G . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:192,163,0,0 0/0:.:146:146:0:0%:64,82,0,0 -Example1_ref 1562 . G . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:194,167,0,0 0/0:.:137:137:0:0%:57,80,0,0 -Example1_ref 1563 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:202,169,0,0 0/0:.:147:147:0:0%:64,83,0,0 -Example1_ref 1564 . C A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=4.8855E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:194,157,0,1 0/0:.:141:139:1:0.71%:58,81,1,0 -Example1_ref 1565 . G A . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=7.2267E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:356:1:0.28%:191,165,1,0 0/0:.:137:137:0:0%:57,80,0,0 -Example1_ref 1566 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:359:0:0%:188,171,0,0 0/0:.:135:135:0:0%:55,80,0,0 -Example1_ref 1567 . A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:190,168,0,0 0/0:.:139:138:0:0%:58,80,0,0 -Example1_ref 1568 . A . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:197,175,0,0 0/0:.:143:142:0:0%:59,83,0,0 -Example1_ref 1569 . T A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=7.2691E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:194,167,0,1 0/0:.:136:136:0:0%:55,81,0,0 -Example1_ref 1570 . A T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=4.6937E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:367:1:0.27%:197,170,0,1 0/0:.:137:136:1:0.73%:55,81,1,0 -Example1_ref 1571 . G . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:188,172,0,0 0/0:.:130:130:0:0%:50,80,0,0 -Example1_ref 1572 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:191,174,0,0 0/0:.:135:135:0:0%:56,79,0,0 -Example1_ref 1573 . T C . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=4.6558E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:188,173,1,0 0/0:.:133:132:1:0.75%:53,79,1,0 -Example1_ref 1574 . G T . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=4.7094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:187,170,1,0 0/0:.:134:133:1:0.75%:54,79,1,0 -Example1_ref 1575 . A G . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=2.7629E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:351:0:0%:188,163,0,0 0/0:.:135:133:1:0.75%:54,79,1,0 -Example1_ref 1576 . T A . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=2.8043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:0:0%:172,159,0,0 0/0:.:129:128:1:0.78%:51,77,1,0 -Example1_ref 1577 . C . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:182,164,0,0 0/0:.:129:129:0:0%:52,77,0,0 -Example1_ref 1578 . T C . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=2.5974E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:179,163,0,0 0/0:.:120:119:1:0.83%:48,71,1,0 -Example1_ref 1579 . G C . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=2.5106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:191,161,0,0 0/0:.:118:117:1:0.85%:49,68,1,0 -Example1_ref 1580 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:192,159,0,0 0/0:.:117:115:0:0%:45,70,0,0 -Example1_ref 1581 . T C . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=4.4354E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:1:0.29%:186,160,1,0 0/0:.:118:117:1:0.85%:48,69,1,0 -Example1_ref 1582 . C T . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=7.5435E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:346:1:0.29%:188,158,1,0 0/0:.:113:113:0:0%:45,68,0,0 -Example1_ref 1583 . A . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:188,163,0,0 0/0:.:116:116:0:0%:48,68,0,0 -Example1_ref 1584 . A T . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=7.4947E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:193,162,1,0 0/0:.:119:119:0:0%:50,69,0,0 -Example1_ref 1585 . T TGC . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5424E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:192,163,0,1 0/0:.:116:116:0:0%:49,67,0,0 -Example1_ref 1586 . G A . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=7.5584E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:190,165,1,0 0/0:.:115:115:0:0%:48,67,0,0 -Example1_ref 1587 . C A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=5.6694E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:349:2:0.57%:187,162,1,1 0/0:.:115:115:0:0%:49,66,0,0 -Example1_ref 1588 . A T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=4.2547E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:344:1:0.29%:194,150,1,0 0/0:.:110:109:1:0.91%:48,61,1,0 -Example1_ref 1589 . T G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=4.3004E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:184,139,0,1 0/0:.:105:104:1:0.95%:45,59,1,0 -Example1_ref 1590 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:180,146,0,0 0/0:.:106:106:0:0%:47,59,0,0 -Example1_ref 1591 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:189,149,0,0 0/0:.:104:104:0:0%:44,60,0,0 -Example1_ref 1592 . G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:188,146,0,0 0/0:.:104:104:0:0%:45,59,0,0 -Example1_ref 1593 . G T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.6415E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:178,145,1,0 0/0:.:100:100:0:0%:39,61,0,0 -Example1_ref 1594 . A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:189,149,0,0 0/0:.:105:105:0:0%:45,60,0,0 -Example1_ref 1595 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:189,152,0,0 0/0:.:103:103:0:0%:43,60,0,0 -Example1_ref 1596 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:182,146,0,0 0/0:.:102:102:0:0%:43,59,0,0 -Example1_ref 1597 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:0:0%:187,144,0,0 0/0:.:102:102:0:0%:45,57,0,0 -Example1_ref 1598 . A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:189,148,0,0 0/0:.:106:106:0:0%:46,60,0,0 -Example1_ref 1599 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:191,149,0,0 0/0:.:106:106:0:0%:46,60,0,0 -Example1_ref 1600 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:184,147,0,0 0/0:.:103:103:0:0%:44,59,0,0 -Example1_ref 1601 . T C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.5576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:179,148,1,0 0/0:.:106:106:0:0%:46,60,0,0 -Example1_ref 1602 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:186,149,0,0 0/0:.:105:105:0:0%:45,60,0,0 -Example1_ref 1603 . A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:183,155,0,0 0/0:.:101:101:0:0%:42,59,0,0 -Example1_ref 1604 . T . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:185,151,0,0 0/0:.:99:99:0:0%:44,55,0,0 -Example1_ref 1605 . C . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:179,151,0,0 0/0:.:103:103:0:0%:45,58,0,0 -Example1_ref 1606 . G . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:177,144,0,0 0/0:.:98:98:0:0%:40,58,0,0 -Example1_ref 1607 . A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:183,148,0,0 0/0:.:104:104:0:0%:46,58,0,0 -Example1_ref 1608 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:179,147,0,0 0/0:.:106:106:0:0%:47,59,0,0 -Example1_ref 1609 . T A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=5.9726E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:177,143,0,0 0/0:.:104:102:2:1.92%:45,57,0,2 -Example1_ref 1610 . C A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=2.4586E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:178,141,0,0 0/0:.:104:103:1:0.96%:45,58,0,1 -Example1_ref 1611 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:180,142,0,0 0/0:.:108:108:0:0%:47,61,0,0 -Example1_ref 1612 . A G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=7.5406E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:180,144,0,1 0/0:.:106:106:0:0%:45,61,0,0 -Example1_ref 1613 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:182,142,0,0 0/0:.:106:106:0:0%:46,60,0,0 -Example1_ref 1614 . A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:179,151,0,0 0/0:.:109:108:0:0%:46,62,0,0 -Example1_ref 1615 . T TCTGTC . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=5.586E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:321:2:0.62%:172,149,2,0 0/0:.:109:109:0:0%:46,63,0,0 -Example1_ref 1616 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:169,145,0,0 0/0:.:104:104:0:0%:45,59,0,0 -Example1_ref 1617 . T TTC . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=2.4356E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:170,153,0,0 0/0:.:104:103:1:0.96%:44,59,1,0 -Example1_ref 1618 . T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:170,152,0,0 0/0:.:106:106:0:0%:45,61,0,0 -Example1_ref 1619 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:159,153,0,0 0/0:.:104:104:0:0%:44,60,0,0 -Example1_ref 1620 . A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:160,154,0,0 0/0:.:105:105:0:0%:43,62,0,0 -Example1_ref 1621 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:162,147,0,0 0/0:.:102:102:0:0%:42,60,0,0 -Example1_ref 1622 . T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:160,150,0,0 0/0:.:103:103:0:0%:43,60,0,0 -Example1_ref 1623 . C T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=6.6518E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:310:3:0.96%:162,148,0,3 0/0:.:98:97:1:1.02%:40,57,0,1 -Example1_ref 1624 . A G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:160,150,0,1 0/0:.:101:101:0:0%:41,60,0,0 -Example1_ref 1625 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:159,151,0,0 0/0:.:99:99:0:0%:40,59,0,0 -Example1_ref 1626 . A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:159,151,0,0 0/0:.:101:101:0:0%:41,60,0,0 -Example1_ref 1627 . T . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:151,147,0,0 0/0:.:95:95:0:0%:39,56,0,0 -Example1_ref 1628 . C A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=4.5033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:300:3:0.99%:154,146,1,2 0/0:.:93:92:0:0%:35,57,0,0 -Example1_ref 1629 . A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:157,154,0,0 0/0:.:100:100:0:0%:38,62,0,0 -Example1_ref 1630 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:98:98:0:0%:36,62,0,0 -Example1_ref 1631 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:154,153,0,0 0/0:.:97:97:0:0%:36,61,0,0 -Example1_ref 1632 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:152,160,0,0 0/0:.:101:101:0:0%:37,64,0,0 -Example1_ref 1633 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:153,160,0,0 0/0:.:99:99:0:0%:36,63,0,0 -Example1_ref 1634 . C A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=7.6049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:152,155,0,1 0/0:.:97:97:0:0%:35,62,0,0 -Example1_ref 1635 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:154,156,0,0 0/0:.:99:99:0:0%:37,62,0,0 -Example1_ref 1636 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:152,157,0,0 0/0:.:101:101:0:0%:37,64,0,0 -Example1_ref 1637 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:152,155,0,0 0/0:.:99:99:0:0%:36,63,0,0 -Example1_ref 1638 . T A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.5931E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:305:1:0.33%:148,157,0,1 0/0:.:97:97:0:0%:34,63,0,0 -Example1_ref 1639 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:148,163,0,0 0/0:.:96:96:0:0%:34,62,0,0 -Example1_ref 1640 . A T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=7.6156E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:149,163,0,1 0/0:.:98:98:0:0%:36,62,0,0 -Example1_ref 1641 . G . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:143,165,0,0 0/0:.:95:95:0:0%:33,62,0,0 -Example1_ref 1642 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:0:0%:142,166,0,0 0/0:.:98:98:0:0%:36,62,0,0 -Example1_ref 1643 . A . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:128,165,0,0 0/0:.:90:90:0:0%:29,61,0,0 -Example1_ref 1644 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:123,163,0,0 0/0:.:92:92:0:0%:30,62,0,0 -Example1_ref 1645 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:124,166,0,0 0/0:.:90:90:0:0%:29,61,0,0 -Example1_ref 1646 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:127,170,0,0 0/0:.:91:91:0:0%:29,62,0,0 -Example1_ref 1647 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:129,168,0,0 0/0:.:91:91:0:0%:29,62,0,0 -Example1_ref 1648 . T G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=2.3158E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:128,164,0,0 0/0:.:88:87:1:1.14%:27,60,1,0 -Example1_ref 1649 . T G . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=7.5862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:125,160,0,1 0/0:.:91:91:0:0%:29,62,0,0 -Example1_ref 1650 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:128,167,0,0 0/0:.:92:92:0:0%:30,62,0,0 -Example1_ref 1651 . G . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:126,163,0,0 0/0:.:90:90:0:0%:29,61,0,0 -Example1_ref 1652 . G C . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=7.624E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:124,167,1,0 0/0:.:91:91:0:0%:28,63,0,0 -Example1_ref 1653 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:124,169,0,0 0/0:.:93:93:0:0%:30,63,0,0 -Example1_ref 1654 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:129,163,0,0 0/0:.:94:94:0:0%:29,65,0,0 -Example1_ref 1655 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:128,165,0,0 0/0:.:93:93:0:0%:30,63,0,0 -Example1_ref 1656 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:129,166,0,0 0/0:.:95:95:0:0%:31,64,0,0 -Example1_ref 1657 . A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:128,168,0,0 0/0:.:95:95:0:0%:31,64,0,0 -Example1_ref 1658 . A . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:125,167,0,0 0/0:.:91:91:0:0%:28,63,0,0 -Example1_ref 1659 . G A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.5926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:118,168,0,1 0/0:.:91:91:0:0%:29,62,0,0 -Example1_ref 1660 . A C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.6344E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:122,161,0,1 0/0:.:88:88:0:0%:28,60,0,0 -Example1_ref 1661 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:126,159,0,0 0/0:.:87:87:0:0%:30,57,0,0 -Example1_ref 1662 . T TACCA . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=7.5339E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:125,152,1,0 0/0:.:91:91:0:0%:30,61,0,0 -Example1_ref 1663 . C A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=4.559E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:282:3:1.05%:125,157,1,2 0/0:.:85:85:0:0%:27,58,0,0 -Example1_ref 1664 . C CATGATTTGA . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=7.6408E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:121,163,1,0 0/0:.:88:88:0:0%:28,60,0,0 -Example1_ref 1665 . T . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:124,161,0,0 0/0:.:90:90:0:0%:29,61,0,0 -Example1_ref 1666 . ATC A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=7.5597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:121,163,1,0 0/0:.:92:92:0:0%:31,61,0,0 -Example1_ref 1667 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:119,157,0,0 0/0:.:90:90:0:0%:31,59,0,0 -Example1_ref 1668 . C T . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=7.5749E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:119,158,1,0 0/0:.:89:89:0:0%:28,61,0,0 -Example1_ref 1669 . TCA T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=7.5683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:117,159,0,1 0/0:.:89:89:0:0%:29,60,0,0 -Example1_ref 1670 . C A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=2.4286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:116,149,0,0 0/0:.:85:84:1:1.18%:25,59,0,1 -Example1_ref 1671 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:120,160,0,0 0/0:.:89:89:0:0%:29,60,0,0 -Example1_ref 1672 . C . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:124,152,0,0 0/0:.:85:85:0:0%:28,57,0,0 -Example1_ref 1673 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:122,157,0,0 0/0:.:85:85:0:0%:27,58,0,0 -Example1_ref 1674 . G . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:119,162,0,0 0/0:.:92:92:0:0%:31,61,0,0 -Example1_ref 1675 . G A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=2.5344E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:112,159,0,0 0/0:.:92:91:1:1.09%:32,59,0,1 -Example1_ref 1676 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:115,162,0,0 0/0:.:95:95:0:0%:34,61,0,0 -Example1_ref 1677 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:115,163,0,0 0/0:.:94:94:0:0%:34,60,0,0 -Example1_ref 1678 . T . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:114,162,0,0 0/0:.:93:93:0:0%:32,61,0,0 -Example1_ref 1679 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:113,162,0,0 0/0:.:93:93:0:0%:32,61,0,0 -Example1_ref 1680 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:116,159,0,0 0/0:.:91:91:0:0%:31,60,0,0 -Example1_ref 1681 . A C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.5278E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:113,157,0,1 0/0:.:89:89:0:0%:31,58,0,0 -Example1_ref 1682 . G A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=4.3485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:111,155,1,0 0/0:.:88:87:1:1.14%:30,57,0,1 -Example1_ref 1683 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:109,151,0,0 0/0:.:83:83:0:0%:31,52,0,0 -Example1_ref 1684 . G . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:109,153,0,0 0/0:.:81:81:0:0%:30,51,0,0 -Example1_ref 1685 . T A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.6276E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:113,140,1,0 0/0:.:79:79:0:0%:29,50,0,0 -Example1_ref 1686 . G A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=7.6489E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:243:1:0.41%:107,136,1,0 0/0:.:75:75:0:0%:30,45,0,0 -Example1_ref 1687 . G . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:104,143,0,0 0/0:.:80:80:0:0%:29,51,0,0 -Example1_ref 1688 . T C . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=7.5516E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:108,147,1,0 0/0:.:83:83:0:0%:31,52,0,0 -Example1_ref 1689 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:110,149,0,0 0/0:.:82:82:0:0%:31,51,0,0 -Example1_ref 1690 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:109,146,0,0 0/0:.:84:84:0:0%:32,52,0,0 -Example1_ref 1691 . A T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.3988E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:111,144,0,1 0/0:.:90:90:0:0%:38,52,0,0 -Example1_ref 1692 . T C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.3684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:110,141,1,0 0/0:.:90:90:0:0%:38,52,0,0 -Example1_ref 1693 . T C . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=7.4194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:110,142,1,0 0/0:.:88:88:0:0%:37,51,0,0 -Example1_ref 1694 . T . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:112,147,0,0 0/0:.:92:92:0:0%:39,53,0,0 -Example1_ref 1695 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:110,148,0,0 0/0:.:92:92:0:0%:39,53,0,0 -Example1_ref 1696 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:107,146,0,0 0/0:.:91:91:0:0%:38,53,0,0 -Example1_ref 1697 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:113,147,0,0 0/0:.:87:87:0:0%:34,53,0,0 -Example1_ref 1698 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:112,150,0,0 0/0:.:90:90:0:0%:39,51,0,0 -Example1_ref 1699 . T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:110,139,0,0 0/0:.:88:88:0:0%:37,51,0,0 -Example1_ref 1700 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:109,146,0,0 0/0:.:87:87:0:0%:37,50,0,0 -Example1_ref 1701 . T A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=7.4194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:109,143,0,1 0/0:.:88:88:0:0%:38,50,0,0 -Example1_ref 1702 . G A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.4128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:106,148,1,0 0/0:.:89:89:0:0%:38,51,0,0 -Example1_ref 1703 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:107,141,0,0 0/0:.:86:86:0:0%:37,49,0,0 -Example1_ref 1704 . C . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:105,147,0,0 0/0:.:82:82:0:0%:34,48,0,0 -Example1_ref 1705 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:107,148,0,0 0/0:.:87:87:0:0%:35,52,0,0 -Example1_ref 1706 . G . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:108,148,0,0 0/0:.:85:85:0:0%:35,50,0,0 -Example1_ref 1707 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:107,146,0,0 0/0:.:87:87:0:0%:36,51,0,0 -Example1_ref 1708 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:109,151,0,0 0/0:.:89:89:0:0%:36,53,0,0 -Example1_ref 1709 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:108,148,0,0 0/0:.:88:88:0:0%:34,54,0,0 -Example1_ref 1710 . C A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.3684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:106,145,1,0 0/0:.:90:90:0:0%:35,55,0,0 -Example1_ref 1711 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:109,146,0,0 0/0:.:89:89:0:0%:35,54,0,0 -Example1_ref 1712 . C CA . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=2.5852E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:112,149,0,0 0/0:.:91:90:1:1.1%:35,55,1,0 -Example1_ref 1713 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:117,152,0,0 0/0:.:95:95:0:0%:39,56,0,0 -Example1_ref 1714 . A ATCTGTC . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.4862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:118,152,1,0 0/0:.:91:91:0:0%:37,54,0,0 -Example1_ref 1715 . T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:118,152,0,0 0/0:.:93:93:0:0%:39,54,0,0 -Example1_ref 1716 . C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:119,146,0,0 0/0:.:91:91:0:0%:38,53,0,0 -Example1_ref 1717 . A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:119,149,0,0 0/0:.:95:95:0:0%:41,54,0,0 -Example1_ref 1718 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:124,147,0,0 0/0:.:93:93:0:0%:40,53,0,0 -Example1_ref 1719 . TAG T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.3611E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:264:1:0.38%:120,144,0,1 0/0:.:95:95:0:0%:42,53,0,0 -Example1_ref 1720 . A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:119,147,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 1721 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:0:0%:119,143,0,0 0/0:.:95:95:0:0%:41,54,0,0 -Example1_ref 1722 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:119,139,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 1723 . G . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:119,139,0,0 0/0:.:91:91:0:0%:38,53,0,0 -Example1_ref 1724 . A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:123,138,0,0 0/0:.:94:94:0:0%:40,54,0,0 -Example1_ref 1725 . G . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:121,141,0,0 0/0:.:95:95:0:0%:41,54,0,0 -Example1_ref 1726 . T A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=4.6495E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:122,139,1,0 0/0:.:96:95:1:1.04%:42,53,1,0 -Example1_ref 1727 . T C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.3295E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:118,139,1,0 0/0:.:94:94:0:0%:41,53,0,0 -Example1_ref 1728 . G . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:119,138,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 1729 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:123,139,0,0 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 1730 . T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:121,140,0,0 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 1731 . G . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:118,141,0,0 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 1732 . G . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:114,140,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 1733 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:118,139,0,0 0/0:.:97:97:0:0%:43,54,0,0 -Example1_ref 1734 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:117,140,0,0 0/0:.:97:97:0:0%:43,54,0,0 -Example1_ref 1735 . A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:118,140,0,0 0/0:.:97:97:0:0%:43,54,0,0 -Example1_ref 1736 . G GAGAC . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.2334E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:250:1:0.4%:110,140,0,1 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 1737 . C T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=2.7988E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:96:95:1:1.04%:43,52,1,0 -Example1_ref 1738 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 1739 . A G . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=7.2046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:114,135,1,0 0/0:.:97:97:0:0%:43,54,0,0 -Example1_ref 1740 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:112,134,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 1741 . G . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:100:100:0:0%:46,54,0,0 -Example1_ref 1742 . C . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:110,132,0,0 0/0:.:97:97:0:0%:45,52,0,0 -Example1_ref 1743 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:113,135,0,0 0/0:.:100:100:0:0%:46,54,0,0 -Example1_ref 1744 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:113,136,0,0 0/0:.:99:99:0:0%:45,54,0,0 -Example1_ref 1745 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:109,133,0,0 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 1746 . G T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.0414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:106,131,1,0 0/0:.:100:100:0:0%:46,54,0,0 -Example1_ref 1747 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:105,133,0,0 0/0:.:99:99:0:0%:44,55,0,0 -Example1_ref 1748 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:110,128,0,0 0/0:.:98:98:0:0%:45,53,0,0 -Example1_ref 1749 . C . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:112,124,0,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 1750 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:108,125,0,0 0/0:.:97:97:0:0%:48,49,0,0 -Example1_ref 1751 . A T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=7.0623E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:112,125,1,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 1752 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:109,122,0,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 1753 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:110,124,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 1754 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:109,127,0,0 0/0:.:98:98:0:0%:48,50,0,0 -Example1_ref 1755 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:108,120,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 1756 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:106,118,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 1757 . T C . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=6.9538E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:105,120,1,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 1758 . C . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:103,115,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 1759 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:101,114,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 1760 . T C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=6.9108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:101,115,1,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 1761 . G T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=6.9677E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:99,116,1,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 1762 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:94,114,0,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 1763 . A T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=6.918E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:95,115,1,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 1764 . T C . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=6.8977E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:96,112,1,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 1765 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:95,111,0,0 0/0:.:92:92:0:0%:47,45,0,0 -Example1_ref 1766 . C T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=5.2605E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:98,107,0,1 0/0:.:94:92:1:1.08%:47,45,1,0 -Example1_ref 1767 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:101,111,0,0 0/0:.:96:96:0:0%:49,47,0,0 -Example1_ref 1768 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:98,110,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 1769 . G T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=6.7021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:79,109,1,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 1770 . G . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:86,110,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 1771 . G T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=3.1469E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:0:0%:84,112,0,0 0/0:.:90:89:1:1.11%:43,46,1,0 -Example1_ref 1772 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:88,111,0,0 0/0:.:93:93:0:0%:46,47,0,0 -Example1_ref 1773 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:0:0%:84,109,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 1774 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:86,109,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 1775 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:84,104,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 1776 . G . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:82,104,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 1777 . G T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=5.4664E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:82,103,1,0 0/0:.:90:89:1:1.11%:46,43,1,0 -Example1_ref 1778 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:80,104,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 1779 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:85,103,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 1780 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 1781 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 1782 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:82,104,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 1783 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:84,102,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 1784 . G T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=6.679E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:1:0.55%:79,101,1,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 1785 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:84,98,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 1786 . G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:85,97,0,0 0/0:.:87:87:0:0%:45,42,0,0 -Example1_ref 1787 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:84,98,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 1788 . TA T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=6.7279E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:84,98,1,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 1789 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:84,102,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 1790 . A C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=5.4291E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:179:1:0.56%:81,98,0,1 0/0:.:87:85:1:1.16%:44,41,1,0 -Example1_ref 1791 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:79,100,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 1792 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:81,98,0,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 1793 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:82,96,0,0 0/0:.:88:88:0:0%:45,43,0,0 -Example1_ref 1794 . A G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=3.346E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:82,93,0,0 0/0:.:88:87:1:1.14%:47,40,0,1 -Example1_ref 1795 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 1796 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 1797 . T C . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=3.3457E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:85,94,0,0 0/0:.:90:89:1:1.11%:49,40,0,1 -Example1_ref 1798 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:87,95,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 1799 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:86,96,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 1800 . T C . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=6.8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:88,98,0,1 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 1801 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:85,100,0,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 1802 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:85,97,0,0 0/0:.:84:84:0:0%:45,39,0,0 -Example1_ref 1803 . C . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:86,100,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 1804 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:87,95,0,0 0/0:.:85:85:0:0%:47,38,0,0 -Example1_ref 1805 . C . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:84,95,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 1806 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:85,93,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 1807 . T C . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=6.6792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:86,90,1,0 0/0:.:88:88:0:0%:48,40,0,0 -Example1_ref 1808 . C CG . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=6.6165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:86,89,1,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 1809 . G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:82,92,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 1810 . G A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=5.5637E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:86,95,1,0 0/0:.:91:90:1:1.1%:48,42,1,0 -Example1_ref 1811 . C . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:86,94,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 1812 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:87,91,0,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 1813 . C A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=3.3579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:87,93,0,0 0/0:.:91:90:1:1.1%:50,40,0,1 -Example1_ref 1814 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:84,95,0,0 0/0:.:95:95:0:0%:52,43,0,0 -Example1_ref 1815 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:89,94,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 1816 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:88,97,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 1817 . A . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:93,102,0,0 0/0:.:104:104:0:0%:53,51,0,0 -Example1_ref 1818 . C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:94,102,0,0 0/0:.:105:105:0:0%:54,51,0,0 -Example1_ref 1819 . A AG . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=6.5972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:93,96,0,1 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 1820 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:94,92,0,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 1821 . C . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:92,92,0,0 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 1822 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:95,93,0,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 1823 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:96,89,0,0 0/0:.:100:99:0:0%:53,46,0,0 -Example1_ref 1824 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:97,90,0,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 1825 . G . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:97,93,0,0 0/0:.:101:101:0:0%:52,49,0,0 -Example1_ref 1826 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:96,93,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 1827 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:96,92,0,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 1828 . T TCTGTCTC . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=6.5333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:102,93,1,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 1829 . T C . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=6.5085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:102,89,0,1 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 1830 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:101,87,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 1831 . AT A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=6.5424E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:105,87,1,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 1832 . T C . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=6.4828E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:187:1:0.53%:103,84,1,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 1833 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:110,89,0,0 0/0:.:101:101:0:0%:56,45,0,0 -Example1_ref 1834 . C . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:108,87,0,0 0/0:.:102:102:0:0%:58,44,0,0 -Example1_ref 1835 . T G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=3.4965E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:106,80,0,0 0/0:.:100:99:1:1%:56,43,1,0 -Example1_ref 1836 . C . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:106,84,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 1837 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:107,81,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 1838 . G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:107,80,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 1839 . C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:105,77,0,0 0/0:.:97:97:0:0%:54,43,0,0 -Example1_ref 1840 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:106,80,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 1841 . C T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=6.5141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:103,81,1,0 0/0:.:99:99:0:0%:55,44,0,0 -Example1_ref 1842 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:103,79,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 1843 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:100,80,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 1844 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:102,81,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 1845 . C A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=6.4727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:101,76,0,1 0/0:.:97:97:0:0%:58,39,0,0 -Example1_ref 1846 . C T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=6.3669E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:100,76,1,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 1847 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:99,75,0,0 0/0:.:102:102:0:0%:60,42,0,0 -Example1_ref 1848 . C . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:99,76,0,0 0/0:.:97:97:0:0%:56,41,0,0 -Example1_ref 1849 . C . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:98,78,0,0 0/0:.:105:105:0:0%:63,42,0,0 -Example1_ref 1850 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:102,81,0,0 0/0:.:109:109:0:0%:64,45,0,0 -Example1_ref 1851 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:99,81,0,0 0/0:.:109:109:0:0%:64,45,0,0 -Example1_ref 1852 . G T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=3.6972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:99,80,0,0 0/0:.:105:104:1:0.95%:60,44,1,0 -Example1_ref 1853 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:105:105:0:0%:60,45,0,0 -Example1_ref 1854 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:104:104:0:0%:61,43,0,0 -Example1_ref 1855 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:99,73,0,0 0/0:.:104:104:0:0%:59,45,0,0 -Example1_ref 1856 . A C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=6.259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:99,74,0,1 0/0:.:104:104:0:0%:60,44,0,0 -Example1_ref 1857 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:105:105:0:0%:61,44,0,0 -Example1_ref 1858 . C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:100,74,0,0 0/0:.:105:105:0:0%:60,45,0,0 -Example1_ref 1859 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:103,74,0,0 0/0:.:105:105:0:0%:61,44,0,0 -Example1_ref 1860 . A G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=3.7676E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:102,75,0,0 0/0:.:107:106:1:0.93%:61,45,1,0 -Example1_ref 1861 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:99,74,0,0 0/0:.:104:104:0:0%:60,44,0,0 -Example1_ref 1862 . C . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:99,75,0,0 0/0:.:111:111:0:0%:65,46,0,0 -Example1_ref 1863 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:96,74,0,0 0/0:.:106:106:0:0%:62,44,0,0 -Example1_ref 1864 . G T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=6.1481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:93,72,1,0 0/0:.:104:104:0:0%:60,44,0,0 -Example1_ref 1865 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:88,73,0,0 0/0:.:104:104:0:0%:59,45,0,0 -Example1_ref 1866 . A T . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=6.2007E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:90,75,1,0 0/0:.:103:102:1:0.97%:57,45,1,0 -Example1_ref 1867 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 1868 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:96,74,0,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 1869 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:94,75,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 1870 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:90,75,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 1871 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:104:104:0:0%:59,45,0,0 -Example1_ref 1872 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:102:102:0:0%:58,44,0,0 -Example1_ref 1873 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:104:104:0:0%:59,45,0,0 -Example1_ref 1874 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:91,75,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 1875 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:95,76,0,0 0/0:.:105:105:0:0%:62,43,0,0 -Example1_ref 1876 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:93,75,0,0 0/0:.:106:106:0:0%:62,44,0,0 -Example1_ref 1877 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:103:103:0:0%:59,44,0,0 -Example1_ref 1878 . C . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:93,72,0,0 0/0:.:106:106:0:0%:60,46,0,0 -Example1_ref 1879 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:94,74,0,0 0/0:.:108:108:0:0%:61,47,0,0 -Example1_ref 1880 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:107:107:0:0%:59,48,0,0 -Example1_ref 1881 . C . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 1882 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:0:0%:94,74,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 1883 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:94,74,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 1884 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 1885 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 1886 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:89,73,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 1887 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 1888 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:94,69,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 1889 . C . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:93,71,0,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 1890 . C A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=6.2948E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:157:1:0.63%:89,68,1,0 0/0:.:94:93:0:0%:49,44,0,0 -Example1_ref 1891 . C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 1892 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 1893 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 1894 . C . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:102,72,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 1895 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:103,73,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 1896 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:103,73,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 1897 . C T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=2.593E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:174:3:1.69%:103,71,1,2 0/0:.:101:100:0:0%:54,46,0,0 -Example1_ref 1898 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:101,65,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 1899 . C . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:102,73,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 1900 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:101,71,0,0 0/0:.:98:98:0:0%:54,44,0,0 -Example1_ref 1901 . G GC . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=6.4045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:170:1:0.58%:99,71,1,0 0/0:.:96:96:0:0%:52,44,0,0 -Example1_ref 1902 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:101,67,0,0 0/0:.:98:98:0:0%:54,44,0,0 -Example1_ref 1903 . G GC . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=3.6614E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:90,71,0,0 0/0:.:93:92:1:1.08%:47,45,1,0 -Example1_ref 1904 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:94,70,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 1905 . C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:95,68,0,0 0/0:.:94:94:0:0%:50,44,0,0 -Example1_ref 1906 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:96,70,0,0 0/0:.:92:92:0:0%:47,45,0,0 -Example1_ref 1907 . C A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=6.3602E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:96,69,0,1 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 1908 . C T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=6.3492E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:90,69,1,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 1909 . A T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=3.6364E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:92:91:1:1.09%:49,42,1,0 -Example1_ref 1910 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:91,65,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 1911 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 1912 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 1913 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 1914 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 1915 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:91,69,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 1916 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 1917 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:94:93:0:0%:50,43,0,0 -Example1_ref 1918 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 1919 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 1920 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:89,67,0,0 0/0:.:93:93:0:0%:49,44,0,0 -Example1_ref 1921 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 1922 . A C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=6.25E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:87,67,1,0 0/0:.:93:93:0:0%:49,44,0,0 -Example1_ref 1923 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 1924 . A C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=6.28E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:89,67,1,0 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 1925 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 1926 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:91,64,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 1927 . A C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=6.2903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:92,63,0,1 0/0:.:92:92:0:0%:48,44,0,0 -Example1_ref 1928 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 1929 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:96:96:0:0%:49,47,0,0 -Example1_ref 1930 . C . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 1931 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:93:93:0:0%:46,47,0,0 -Example1_ref 1932 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 1933 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 1934 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 1935 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:95:95:0:0%:48,47,0,0 -Example1_ref 1936 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 1937 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:95:95:0:0%:48,47,0,0 -Example1_ref 1938 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:94,67,0,0 0/0:.:95:95:0:0%:48,47,0,0 -Example1_ref 1939 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 1940 . C . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 1941 . A G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=6.2651E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:90,65,1,0 0/0:.:93:93:0:0%:46,47,0,0 -Example1_ref 1942 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:89:89:0:0%:44,45,0,0 -Example1_ref 1943 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:91:91:0:0%:45,46,0,0 -Example1_ref 1944 . C . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:88,65,0,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 1945 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 1946 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:91:91:0:0%:41,50,0,0 -Example1_ref 1947 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:93:93:0:0%:44,49,0,0 -Example1_ref 1948 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:94:94:0:0%:44,50,0,0 -Example1_ref 1949 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:94:94:0:0%:44,50,0,0 -Example1_ref 1950 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:94:92:0:0%:42,50,0,0 -Example1_ref 1951 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:86,68,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 1952 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 1953 . T A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=6.2903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:89,66,1,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 1954 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 1955 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 1956 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 1957 . G C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=3.7449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:91:90:1:1.1%:39,51,1,0 -Example1_ref 1958 . G T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=3.7449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:91:90:1:1.1%:39,51,1,0 -Example1_ref 1959 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:85,66,0,0 0/0:.:91:91:0:0%:42,49,0,0 -Example1_ref 1960 . T C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=6.2343E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:81,67,1,0 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 1961 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:87,66,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 1962 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 1963 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:86,67,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 1964 . C T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=6.2449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:86,66,1,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 1965 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:86,67,0,0 0/0:.:92:92:0:0%:43,49,0,0 -Example1_ref 1966 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:0:0%:86,67,0,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 1967 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 1968 . C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:86,66,0,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 1969 . A G . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=6.2195E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:152:1:0.65%:85,67,1,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 1970 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:95:95:0:0%:44,51,0,0 -Example1_ref 1971 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:83,71,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 1972 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:87,75,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 1973 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:82,75,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 1974 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:83,75,0,0 0/0:.:92:92:0:0%:41,51,0,0 -Example1_ref 1975 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:82,74,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 1976 . G A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=6.3115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:78,75,1,0 0/0:.:90:90:0:0%:38,52,0,0 -Example1_ref 1977 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 1978 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:83,76,0,0 0/0:.:91:91:0:0%:41,50,0,0 -Example1_ref 1979 . A AG . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=5.9692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:83,73,0,1 0/0:.:90:89:1:1.11%:41,48,0,1 -Example1_ref 1980 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:93:93:0:0%:44,49,0,0 -Example1_ref 1981 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:81,72,0,0 0/0:.:83:83:0:0%:37,46,0,0 -Example1_ref 1982 . C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:82,69,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 1983 . T A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=3.5685E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:86:85:1:1.16%:35,50,1,0 -Example1_ref 1984 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:82,72,0,0 0/0:.:87:87:0:0%:37,50,0,0 -Example1_ref 1985 . G T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=6.4198E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:83,72,1,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 1986 . G T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=3.7607E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:75,71,0,0 0/0:.:88:87:1:1.14%:36,51,1,0 -Example1_ref 1987 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:0:0%:86,70,0,0 0/0:.:90:90:0:0%:40,50,0,0 -Example1_ref 1988 . C A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=3.5897E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:80,70,0,0 0/0:.:84:83:1:1.19%:35,48,0,1 -Example1_ref 1989 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 1990 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:84,61,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 1991 . C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:81,61,0,0 0/0:.:79:79:0:0%:34,45,0,0 -Example1_ref 1992 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:80,62,0,0 0/0:.:84:84:0:0%:36,48,0,0 -Example1_ref 1993 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:80,60,0,0 0/0:.:79:79:0:0%:34,45,0,0 -Example1_ref 1994 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:82,59,0,0 0/0:.:84:84:0:0%:35,49,0,0 -Example1_ref 1995 . C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:84,60,0,0 0/0:.:81:81:0:0%:35,46,0,0 -Example1_ref 1996 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:82:82:0:0%:34,48,0,0 -Example1_ref 1997 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 1998 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:0:0%:86,61,0,0 0/0:.:86:86:0:0%:39,47,0,0 -Example1_ref 1999 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:87,59,0,0 0/0:.:82:82:0:0%:36,46,0,0 -Example1_ref 2000 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:88,60,0,0 0/0:.:87:87:0:0%:41,46,0,0 -Example1_ref 2001 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:89,58,0,0 0/0:.:86:86:0:0%:41,45,0,0 -Example1_ref 2002 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:89,59,0,0 0/0:.:86:86:0:0%:41,45,0,0 -Example1_ref 2003 . C A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=6.3755E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:89,56,0,1 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 2004 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:88,54,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 2005 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:89,57,0,0 0/0:.:85:85:0:0%:39,46,0,0 -Example1_ref 2006 . C T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=3.7104E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:81,58,0,0 0/0:.:82:81:1:1.22%:37,44,1,0 -Example1_ref 2007 . A G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=6.4878E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:78,54,1,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 2008 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 2009 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:77,61,0,0 0/0:.:70:70:0:0%:36,34,0,0 -Example1_ref 2010 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:77,62,0,0 0/0:.:72:72:0:0%:37,35,0,0 -Example1_ref 2011 . G . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:72,64,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 2012 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:79,62,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 2013 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:137:0:0%:76,61,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 2014 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:74,65,0,0 0/0:.:76:76:0:0%:36,40,0,0 -Example1_ref 2015 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:136:0:0%:72,64,0,0 0/0:.:74:74:0:0%:35,39,0,0 -Example1_ref 2016 . A T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=5.8347E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:70,66,1,0 0/0:.:75:74:1:1.33%:34,40,1,0 -Example1_ref 2017 . G . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 2018 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:74:74:0:0%:35,39,0,0 -Example1_ref 2019 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:74,63,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 2020 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 2021 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 2022 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:75,62,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 2023 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:69,63,0,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 2024 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:71,64,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 2025 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:71,59,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 2026 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:71,61,0,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 2027 . T A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=6.65E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:72,60,1,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 2028 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 2029 . G T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=6.6495E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:68,60,1,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 2030 . A ATCCTG . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=6.5686E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:73,60,1,0 0/0:.:70:70:0:0%:36,34,0,0 -Example1_ref 2031 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 2032 . C T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=3.5354E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:70:69:1:1.43%:32,37,1,0 -Example1_ref 2033 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:73,59,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 2034 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 2035 . G T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=4.079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:124:2:1.59%:68,56,2,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 2036 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:70,58,0,0 0/0:.:72:72:0:0%:34,38,0,0 -Example1_ref 2037 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:0:0%:66,57,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 2038 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:71,56,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 2039 . C T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=6.7179E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:75,55,1,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 2040 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 2041 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 2042 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:83,54,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 2043 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:82,57,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 2044 . C A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1.1324E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:82,57,0,0 0/0:.:71:69:2:2.82%:33,36,2,0 -Example1_ref 2045 . A C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=6.5714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:83,54,1,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 2046 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:81,55,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 2047 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 2048 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 2049 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:80,51,0,0 0/0:.:70:70:0:0%:33,37,0,0 -Example1_ref 2050 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:79,50,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 2051 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 2052 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:81,51,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 2053 . C A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=3.2995E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:82,50,0,0 0/0:.:65:64:1:1.54%:33,31,1,0 -Example1_ref 2054 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 2055 . T C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=3.401E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:80,50,0,0 0/0:.:67:66:1:1.49%:33,33,0,1 -Example1_ref 2056 . G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:81,50,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 2057 . G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:81,50,0,0 0/0:.:67:66:0:0%:31,35,0,0 -Example1_ref 2058 . G . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 2059 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 2060 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:83,54,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 2061 . A G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=6.7662E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:82,53,0,1 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 2062 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:82,55,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 2063 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:82,55,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 2064 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 2065 . G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:80,53,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 2066 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 2067 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:60:60:0:0%:29,31,0,0 -Example1_ref 2068 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:81,52,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 2069 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:75,51,0,0 0/0:.:59:59:0:0%:26,33,0,0 -Example1_ref 2070 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:77,52,0,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 2071 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 2072 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 2073 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:79,58,0,0 0/0:.:61:61:0:0%:27,34,0,0 -Example1_ref 2074 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:81,58,0,0 0/0:.:62:62:0:0%:27,35,0,0 -Example1_ref 2075 . A C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=6.9154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:1:0.72%:82,56,1,0 0/0:.:62:62:0:0%:27,35,0,0 -Example1_ref 2076 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:82,57,0,0 0/0:.:62:62:0:0%:27,35,0,0 -Example1_ref 2077 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:85,57,0,0 0/0:.:61:61:0:0%:27,34,0,0 -Example1_ref 2078 . G . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:82,60,0,0 0/0:.:67:67:0:0%:26,41,0,0 -Example1_ref 2079 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:66:66:0:0%:26,40,0,0 -Example1_ref 2080 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:68:68:0:0%:26,42,0,0 -Example1_ref 2081 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:78,62,0,0 0/0:.:68:68:0:0%:26,42,0,0 -Example1_ref 2082 . A G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=6.7453E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:84,58,0,1 0/0:.:69:69:0:0%:27,42,0,0 -Example1_ref 2083 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:72:72:0:0%:27,45,0,0 -Example1_ref 2084 . C A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=6.6176E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:76,58,0,1 0/0:.:69:69:0:0%:27,42,0,0 -Example1_ref 2085 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:70:70:0:0%:26,44,0,0 -Example1_ref 2086 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:73,61,0,0 0/0:.:71:71:0:0%:27,44,0,0 -Example1_ref 2087 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:73:73:0:0%:27,46,0,0 -Example1_ref 2088 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:71,59,0,0 0/0:.:71:71:0:0%:27,44,0,0 -Example1_ref 2089 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:74,60,0,0 0/0:.:72:72:0:0%:26,46,0,0 -Example1_ref 2090 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:70:70:0:0%:27,43,0,0 -Example1_ref 2091 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:75:75:0:0%:27,48,0,0 -Example1_ref 2092 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:74,60,0,0 0/0:.:73:73:0:0%:27,46,0,0 -Example1_ref 2093 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:72:72:0:0%:26,46,0,0 -Example1_ref 2094 . G A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=3.5294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:71,61,0,0 0/0:.:72:71:1:1.39%:26,45,0,1 -Example1_ref 2095 . G T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=3.5545E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:75:74:1:1.33%:26,48,1,0 -Example1_ref 2096 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:73,61,0,0 0/0:.:75:75:0:0%:27,48,0,0 -Example1_ref 2097 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:72:72:0:0%:27,45,0,0 -Example1_ref 2098 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:71,60,0,0 0/0:.:75:75:0:0%:27,48,0,0 -Example1_ref 2099 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:73:73:0:0%:27,46,0,0 -Example1_ref 2100 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:76:76:0:0%:27,49,0,0 -Example1_ref 2101 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:71,60,0,0 0/0:.:75:75:0:0%:26,49,0,0 -Example1_ref 2102 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:70,61,0,0 0/0:.:77:77:0:0%:26,51,0,0 -Example1_ref 2103 . A G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=6.4216E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:69,61,1,0 0/0:.:73:73:0:0%:25,48,0,0 -Example1_ref 2104 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:71,58,0,0 0/0:.:73:73:0:0%:27,46,0,0 -Example1_ref 2105 . GA G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=6.3547E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:68,60,1,0 0/0:.:74:74:0:0%:26,48,0,0 -Example1_ref 2106 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:69,61,0,0 0/0:.:73:73:0:0%:25,48,0,0 -Example1_ref 2107 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:66,63,0,0 0/0:.:73:73:0:0%:26,47,0,0 -Example1_ref 2108 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:71,57,0,0 0/0:.:68:68:0:0%:25,43,0,0 -Example1_ref 2109 . C T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=3.2381E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:81,61,0,0 0/0:.:68:67:1:1.47%:26,41,1,0 -Example1_ref 2110 . T A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=6.7299E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:81,60,1,0 0/0:.:69:69:0:0%:26,43,0,0 -Example1_ref 2111 . C . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:81,63,0,0 0/0:.:69:69:0:0%:27,42,0,0 -Example1_ref 2112 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:79,63,0,0 0/0:.:72:72:0:0%:27,45,0,0 -Example1_ref 2113 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:80,64,0,0 0/0:.:74:74:0:0%:27,47,0,0 -Example1_ref 2114 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:82,65,0,0 0/0:.:73:73:0:0%:26,47,0,0 -Example1_ref 2115 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:81,65,0,0 0/0:.:75:75:0:0%:27,48,0,0 -Example1_ref 2116 . A C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=6.7873E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:84,65,1,0 0/0:.:71:71:0:0%:24,47,0,0 -Example1_ref 2117 . G . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:82,63,0,0 0/0:.:74:74:0:0%:28,46,0,0 -Example1_ref 2118 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:140:0:0%:80,60,0,0 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 2119 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:83,63,0,0 0/0:.:74:74:0:0%:28,46,0,0 -Example1_ref 2120 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:86,63,0,0 0/0:.:75:75:0:0%:29,46,0,0 -Example1_ref 2121 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:86,61,0,0 0/0:.:72:72:0:0%:29,43,0,0 -Example1_ref 2122 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:85,65,0,0 0/0:.:75:75:0:0%:28,47,0,0 -Example1_ref 2123 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:84,61,0,0 0/0:.:73:73:0:0%:28,45,0,0 -Example1_ref 2124 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:85,65,0,0 0/0:.:77:77:0:0%:28,49,0,0 -Example1_ref 2125 . G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:81,65,0,0 0/0:.:77:77:0:0%:28,49,0,0 -Example1_ref 2126 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:77:77:0:0%:28,49,0,0 -Example1_ref 2127 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:82,64,0,0 0/0:.:77:77:0:0%:28,49,0,0 -Example1_ref 2128 . T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:84,63,0,0 0/0:.:74:74:0:0%:27,47,0,0 -Example1_ref 2129 . C . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:88,62,0,0 0/0:.:77:77:0:0%:28,49,0,0 -Example1_ref 2130 . TA T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=6.5801E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:86,65,0,1 0/0:.:79:79:0:0%:29,50,0,0 -Example1_ref 2131 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:84,66,0,0 0/0:.:82:82:0:0%:30,52,0,0 -Example1_ref 2132 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:83:83:0:0%:28,55,0,0 -Example1_ref 2133 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:83,67,0,0 0/0:.:84:84:0:0%:29,55,0,0 -Example1_ref 2134 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:85,66,0,0 0/0:.:79:79:0:0%:28,51,0,0 -Example1_ref 2135 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:87,65,0,0 0/0:.:80:80:0:0%:28,52,0,0 -Example1_ref 2136 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:77:77:0:0%:29,48,0,0 -Example1_ref 2137 . G . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:84,66,0,0 0/0:.:77:77:0:0%:28,49,0,0 -Example1_ref 2138 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:83,66,0,0 0/0:.:75:75:0:0%:25,50,0,0 -Example1_ref 2139 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:84,68,0,0 0/0:.:80:80:0:0%:28,52,0,0 -Example1_ref 2140 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:77:77:0:0%:27,50,0,0 -Example1_ref 2141 . C A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=5.5459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:87,65,0,1 0/0:.:76:75:1:1.32%:30,45,0,1 -Example1_ref 2142 . C . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:85,67,0,0 0/0:.:77:77:0:0%:30,47,0,0 -Example1_ref 2143 . C A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:83,72,1,0 0/0:.:78:78:0:0%:31,47,0,0 -Example1_ref 2144 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:83:83:0:0%:31,52,0,0 -Example1_ref 2145 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:85,72,0,0 0/0:.:84:84:0:0%:31,53,0,0 -Example1_ref 2146 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:84:84:0:0%:31,53,0,0 -Example1_ref 2147 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:0:0%:87,74,0,0 0/0:.:83:83:0:0%:30,53,0,0 -Example1_ref 2148 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:87,74,0,0 0/0:.:81:81:0:0%:32,49,0,0 -Example1_ref 2149 . A G . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=6.4777E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:86,73,1,0 0/0:.:87:87:0:0%:32,55,0,0 -Example1_ref 2150 . C G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=6.5574E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:87,72,0,1 0/0:.:84:84:0:0%:32,52,0,0 -Example1_ref 2151 . G A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=6.4257E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:85,74,0,1 0/0:.:89:89:0:0%:32,57,0,0 -Example1_ref 2152 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:89:89:0:0%:32,57,0,0 -Example1_ref 2153 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:90:90:0:0%:33,57,0,0 -Example1_ref 2154 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:86,76,0,0 0/0:.:89:89:0:0%:35,54,0,0 -Example1_ref 2155 . A G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=6.4173E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:84,78,1,0 0/0:.:91:91:0:0%:34,57,0,0 -Example1_ref 2156 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:88,78,0,0 0/0:.:94:94:0:0%:35,59,0,0 -Example1_ref 2157 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:89,77,0,0 0/0:.:94:94:0:0%:36,58,0,0 -Example1_ref 2158 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:90,79,0,0 0/0:.:94:94:0:0%:36,58,0,0 -Example1_ref 2159 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:91,77,0,0 0/0:.:93:93:0:0%:35,58,0,0 -Example1_ref 2160 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:95:95:0:0%:34,61,0,0 -Example1_ref 2161 . G T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=4.1167E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:165:2:1.2%:88,77,2,0 0/0:.:93:93:0:0%:32,61,0,0 -Example1_ref 2162 . A G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=6.3347E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:85,73,1,0 0/0:.:92:92:0:0%:33,59,0,0 -Example1_ref 2163 . T . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:86,65,0,0 0/0:.:86:85:0:0%:32,53,0,0 -Example1_ref 2164 . C A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=6.4257E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:89,70,1,0 0/0:.:89:89:0:0%:34,55,0,0 -Example1_ref 2165 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:89:89:0:0%:32,57,0,0 -Example1_ref 2166 . C A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=2.9356E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:156:1:0.64%:89,67,0,1 0/0:.:88:86:2:2.27%:33,53,0,2 -Example1_ref 2167 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:86,71,0,0 0/0:.:93:93:0:0%:33,60,0,0 -Example1_ref 2168 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:89,71,0,0 0/0:.:93:93:0:0%:33,60,0,0 -Example1_ref 2169 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:89:89:0:0%:30,59,0,0 -Example1_ref 2170 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:86,71,0,0 0/0:.:91:91:0:0%:32,59,0,0 -Example1_ref 2171 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:90:90:0:0%:31,59,0,0 -Example1_ref 2172 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:88:88:0:0%:28,60,0,0 -Example1_ref 2173 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:0:0%:85,70,0,0 0/0:.:93:93:0:0%:32,61,0,0 -Example1_ref 2174 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:81,68,0,0 0/0:.:92:92:0:0%:32,60,0,0 -Example1_ref 2175 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:83,72,0,0 0/0:.:90:90:0:0%:30,60,0,0 -Example1_ref 2176 . G A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=6.3934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:81,74,1,0 0/0:.:88:88:0:0%:30,58,0,0 -Example1_ref 2177 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:79,74,0,0 0/0:.:87:87:0:0%:30,57,0,0 -Example1_ref 2178 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:89:89:0:0%:31,58,0,0 -Example1_ref 2179 . A T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=3.7143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:154:0:0%:80,74,0,0 0/0:.:91:90:1:1.1%:31,59,1,0 -Example1_ref 2180 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:0:0%:81,75,0,0 0/0:.:89:89:0:0%:30,59,0,0 -Example1_ref 2181 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:91:91:0:0%:31,60,0,0 -Example1_ref 2182 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:89:89:0:0%:30,59,0,0 -Example1_ref 2183 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:0:0%:82,75,0,0 0/0:.:91:91:0:0%:32,59,0,0 -Example1_ref 2184 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:89:89:0:0%:29,60,0,0 -Example1_ref 2185 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:91:91:0:0%:31,60,0,0 -Example1_ref 2186 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:82,76,0,0 0/0:.:90:90:0:0%:29,61,0,0 -Example1_ref 2187 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:76,74,0,0 0/0:.:89:89:0:0%:29,60,0,0 -Example1_ref 2188 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:79,78,0,0 0/0:.:89:89:0:0%:28,61,0,0 -Example1_ref 2189 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:0:0%:79,77,0,0 0/0:.:85:85:0:0%:25,60,0,0 -Example1_ref 2190 . G . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:77,74,0,0 0/0:.:84:84:0:0%:25,59,0,0 -Example1_ref 2191 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:75,77,0,0 0/0:.:82:82:0:0%:24,58,0,0 -Example1_ref 2192 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:77,77,0,0 0/0:.:85:85:0:0%:25,60,0,0 -Example1_ref 2193 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:77,75,0,0 0/0:.:80:80:0:0%:25,55,0,0 -Example1_ref 2194 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:76,68,0,0 0/0:.:80:80:0:0%:26,54,0,0 -Example1_ref 2195 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:83,70,0,0 0/0:.:79:79:0:0%:26,53,0,0 -Example1_ref 2196 . T . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:81,71,0,0 0/0:.:83:83:0:0%:28,55,0,0 -Example1_ref 2197 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:86:86:0:0%:27,59,0,0 -Example1_ref 2198 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:79,74,0,0 0/0:.:81:81:0:0%:27,54,0,0 -Example1_ref 2199 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:79,72,0,0 0/0:.:87:87:0:0%:27,60,0,0 -Example1_ref 2200 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:79,72,0,0 0/0:.:88:88:0:0%:27,61,0,0 -Example1_ref 2201 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:78,68,0,0 0/0:.:80:80:0:0%:25,55,0,0 -Example1_ref 2202 . G A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=6.0067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:79,63,1,0 0/0:.:83:82:1:1.2%:28,54,0,1 -Example1_ref 2203 . G T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=5.9806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:80,65,1,0 0/0:.:84:83:1:1.19%:26,57,1,0 -Example1_ref 2204 . G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:78,65,0,0 0/0:.:80:80:0:0%:25,55,0,0 -Example1_ref 2205 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:83,66,0,0 0/0:.:82:82:0:0%:27,55,0,0 -Example1_ref 2206 . A C . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=6.4378E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:82,67,1,0 0/0:.:83:83:0:0%:27,56,0,0 -Example1_ref 2207 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:82:82:0:0%:26,56,0,0 -Example1_ref 2208 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:81,69,0,0 0/0:.:84:84:0:0%:28,56,0,0 -Example1_ref 2209 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:82,70,0,0 0/0:.:86:86:0:0%:29,57,0,0 -Example1_ref 2210 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:83,68,0,0 0/0:.:85:85:0:0%:29,56,0,0 -Example1_ref 2211 . G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:81,70,0,0 0/0:.:82:82:0:0%:26,56,0,0 -Example1_ref 2212 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:80,67,0,0 0/0:.:81:81:0:0%:27,54,0,0 -Example1_ref 2213 . G A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=6.4557E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:82,70,0,1 0/0:.:84:84:0:0%:27,57,0,0 -Example1_ref 2214 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:81,69,0,0 0/0:.:84:84:0:0%:27,57,0,0 -Example1_ref 2215 . C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:80,69,0,0 0/0:.:82:82:0:0%:27,55,0,0 -Example1_ref 2216 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:83:83:0:0%:28,55,0,0 -Example1_ref 2217 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:84,70,0,0 0/0:.:84:84:0:0%:28,56,0,0 -Example1_ref 2218 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:83,68,0,0 0/0:.:82:82:0:0%:27,55,0,0 -Example1_ref 2219 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:83:83:0:0%:26,57,0,0 -Example1_ref 2220 . T . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:82:82:0:0%:25,57,0,0 -Example1_ref 2221 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:88,72,0,0 0/0:.:84:84:0:0%:26,58,0,0 -Example1_ref 2222 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:87,72,0,0 0/0:.:83:83:0:0%:27,56,0,0 -Example1_ref 2223 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:90,73,0,0 0/0:.:83:83:0:0%:25,58,0,0 -Example1_ref 2224 . G A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=6.5587E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:88,73,1,0 0/0:.:85:85:0:0%:27,58,0,0 -Example1_ref 2225 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:90,74,0,0 0/0:.:86:86:0:0%:28,58,0,0 -Example1_ref 2226 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:88,72,0,0 0/0:.:85:85:0:0%:27,58,0,0 -Example1_ref 2227 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:88,74,0,0 0/0:.:87:87:0:0%:27,60,0,0 -Example1_ref 2228 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:90,72,0,0 0/0:.:80:80:0:0%:24,56,0,0 -Example1_ref 2229 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:80:80:0:0%:26,54,0,0 -Example1_ref 2230 . C . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:77:77:0:0%:24,53,0,0 -Example1_ref 2231 . C T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=6.6387E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:83,74,1,0 0/0:.:80:80:0:0%:23,57,0,0 -Example1_ref 2232 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:80:80:0:0%:22,58,0,0 -Example1_ref 2233 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:82:82:0:0%:23,59,0,0 -Example1_ref 2234 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:83,75,0,0 0/0:.:80:80:0:0%:22,58,0,0 -Example1_ref 2235 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:79:79:0:0%:23,56,0,0 -Example1_ref 2236 . G A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=3.3473E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:80:79:1:1.25%:21,58,1,0 -Example1_ref 2237 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:84,75,0,0 0/0:.:76:76:0:0%:20,56,0,0 -Example1_ref 2238 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:81:81:0:0%:22,59,0,0 -Example1_ref 2239 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:78:78:0:0%:21,57,0,0 -Example1_ref 2240 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:86,78,0,0 0/0:.:80:80:0:0%:22,58,0,0 -Example1_ref 2241 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:89,79,0,0 0/0:.:79:79:0:0%:22,57,0,0 -Example1_ref 2242 . T G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=6.7755E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:86,79,1,0 0/0:.:79:79:0:0%:23,56,0,0 -Example1_ref 2243 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:81:81:0:0%:22,59,0,0 -Example1_ref 2244 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:89,77,0,0 0/0:.:80:80:0:0%:22,58,0,0 -Example1_ref 2245 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:87,75,0,0 0/0:.:80:80:0:0%:22,58,0,0 -Example1_ref 2246 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:81:81:0:0%:22,59,0,0 -Example1_ref 2247 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:82:82:0:0%:24,58,0,0 -Example1_ref 2248 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:79:79:0:0%:22,57,0,0 -Example1_ref 2249 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:82:82:0:0%:25,57,0,0 -Example1_ref 2250 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:82:82:0:0%:26,56,0,0 -Example1_ref 2251 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:89,75,0,0 0/0:.:82:82:0:0%:25,57,0,0 -Example1_ref 2252 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:88,75,0,0 0/0:.:83:83:0:0%:26,57,0,0 -Example1_ref 2253 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:90,74,0,0 0/0:.:84:84:0:0%:28,56,0,0 -Example1_ref 2254 . G . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:86,76,0,0 0/0:.:81:81:0:0%:27,54,0,0 -Example1_ref 2255 . G T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=5.6909E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:85,75,1,0 0/0:.:84:83:1:1.19%:26,57,1,0 -Example1_ref 2256 . C CACTGTCTCTT . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:87,76,1,0 0/0:.:82:82:0:0%:27,55,0,0 -Example1_ref 2257 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:89,80,0,0 0/0:.:85:85:0:0%:28,57,0,0 -Example1_ref 2258 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:85:85:0:0%:28,57,0,0 -Example1_ref 2259 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:98,84,0,0 0/0:.:90:90:0:0%:32,58,0,0 -Example1_ref 2260 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:102,81,0,0 0/0:.:89:89:0:0%:34,55,0,0 -Example1_ref 2261 . T G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=3.3209E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:101,78,0,0 0/0:.:89:88:1:1.12%:32,56,0,1 -Example1_ref 2262 . T . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:100,79,0,0 0/0:.:90:90:0:0%:34,56,0,0 -Example1_ref 2263 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:100,79,0,0 0/0:.:89:89:0:0%:33,56,0,0 -Example1_ref 2264 . C . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:101,79,0,0 0/0:.:89:89:0:0%:35,54,0,0 -Example1_ref 2265 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:101,79,0,0 0/0:.:91:91:0:0%:35,56,0,0 -Example1_ref 2266 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:95,79,0,0 0/0:.:91:91:0:0%:35,56,0,0 -Example1_ref 2267 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:96,78,0,0 0/0:.:90:90:0:0%:35,55,0,0 -Example1_ref 2268 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:84:84:0:0%:36,48,0,0 -Example1_ref 2269 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:85:85:0:0%:36,49,0,0 -Example1_ref 2270 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:96,73,0,0 0/0:.:86:86:0:0%:36,50,0,0 -Example1_ref 2271 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:86:86:0:0%:36,50,0,0 -Example1_ref 2272 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:97,73,0,0 0/0:.:86:86:0:0%:36,50,0,0 -Example1_ref 2273 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:84:84:0:0%:36,48,0,0 -Example1_ref 2274 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:99,69,0,0 0/0:.:84:84:0:0%:36,48,0,0 -Example1_ref 2275 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:84:84:0:0%:37,47,0,0 -Example1_ref 2276 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:101,69,0,0 0/0:.:83:83:0:0%:37,46,0,0 -Example1_ref 2277 . T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:101,69,0,0 0/0:.:89:89:0:0%:40,49,0,0 -Example1_ref 2278 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:88:88:0:0%:40,48,0,0 -Example1_ref 2279 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:98,70,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 2280 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:86:86:0:0%:39,47,0,0 -Example1_ref 2281 . A G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=6.5748E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:98,68,1,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 2282 . A AC . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=6.5385E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:99,70,1,0 0/0:.:90:90:0:0%:40,50,0,0 -Example1_ref 2283 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:86:86:0:0%:38,48,0,0 -Example1_ref 2284 . A G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=6.494E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:97,65,1,0 0/0:.:88:88:0:0%:40,48,0,0 -Example1_ref 2285 . G A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=5.8583E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:95,67,0,1 0/0:.:90:89:1:1.11%:40,49,0,1 -Example1_ref 2286 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:0:0%:97,64,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 2287 . G A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=6.5854E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:93,68,0,1 0/0:.:84:84:0:0%:37,47,0,0 -Example1_ref 2288 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:86:86:0:0%:37,49,0,0 -Example1_ref 2289 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:80:80:0:0%:35,45,0,0 -Example1_ref 2290 . C A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=6.56E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:94,69,0,1 0/0:.:86:86:0:0%:38,48,0,0 -Example1_ref 2291 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 2292 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:88:88:0:0%:41,47,0,0 -Example1_ref 2293 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:93,70,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 2294 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:90,71,0,0 0/0:.:88:88:0:0%:41,47,0,0 -Example1_ref 2295 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:90:90:0:0%:42,48,0,0 -Example1_ref 2296 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:94,70,0,0 0/0:.:86:86:0:0%:38,48,0,0 -Example1_ref 2297 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:94,70,0,0 0/0:.:87:87:0:0%:41,46,0,0 -Example1_ref 2298 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:95,70,0,0 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 2299 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:88,70,0,0 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 2300 . G . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:92:92:0:0%:44,48,0,0 -Example1_ref 2301 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:90:90:0:0%:44,46,0,0 -Example1_ref 2302 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:89:89:0:0%:43,46,0,0 -Example1_ref 2303 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:88:88:0:0%:41,47,0,0 -Example1_ref 2304 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:90:90:0:0%:43,47,0,0 -Example1_ref 2305 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:83,70,0,0 0/0:.:92:92:0:0%:43,49,0,0 -Example1_ref 2306 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:81,70,0,0 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 2307 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 2308 . T . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:82,66,0,0 0/0:.:89:89:0:0%:42,47,0,0 -Example1_ref 2309 . C . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:89:89:0:0%:43,46,0,0 -Example1_ref 2310 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:85,71,0,0 0/0:.:90:90:0:0%:42,48,0,0 -Example1_ref 2311 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:86,71,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 2312 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:87:87:0:0%:41,46,0,0 -Example1_ref 2313 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:86,72,0,0 0/0:.:90:90:0:0%:42,48,0,0 -Example1_ref 2314 . A AG . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=6.4113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:86,72,1,0 0/0:.:89:89:0:0%:43,46,0,0 -Example1_ref 2315 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:90:90:0:0%:44,46,0,0 -Example1_ref 2316 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 2317 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:89:89:0:0%:43,46,0,0 -Example1_ref 2318 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:85,75,0,0 0/0:.:91:91:0:0%:44,47,0,0 -Example1_ref 2319 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 2320 . C A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=5.8435E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:90,71,1,0 0/0:.:89:88:1:1.12%:43,45,0,1 -Example1_ref 2321 . C . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:89,74,0,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 2322 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:91,72,0,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 2323 . G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:90,75,0,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 2324 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:94,74,0,0 0/0:.:92:92:0:0%:47,45,0,0 -Example1_ref 2325 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 2326 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 2327 . C A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1.2529E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:93:90:2:2.17%:46,44,1,1 -Example1_ref 2328 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 2329 . A G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=3.6078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:91,72,0,0 0/0:.:92:91:1:1.09%:45,46,0,1 -Example1_ref 2330 . G GAGAC . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=3.6508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:0:0%:89,71,0,0 0/0:.:92:91:1:1.09%:46,45,0,1 -Example1_ref 2331 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:86,72,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 2332 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:93,72,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 2333 . C A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=3.7891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:97:96:1:1.03%:48,48,0,1 -Example1_ref 2334 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:95,76,0,0 0/0:.:96:95:0:0%:49,46,0,0 -Example1_ref 2335 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:95,77,0,0 0/0:.:101:101:0:0%:51,50,0,0 -Example1_ref 2336 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:98,79,0,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 2337 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:98,80,0,0 0/0:.:100:100:0:0%:49,51,0,0 -Example1_ref 2338 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:96,80,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 2339 . G GAGAC . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=3.6331E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:101:100:1:0.99%:52,48,0,1 -Example1_ref 2340 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:97:97:0:0%:52,45,0,0 -Example1_ref 2341 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:0:0%:99,79,0,0 0/0:.:97:97:0:0%:52,45,0,0 -Example1_ref 2342 . T G . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=3.5507E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:98,80,0,0 0/0:.:99:97:1:1.02%:53,44,0,1 -Example1_ref 2343 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:100,79,0,0 0/0:.:99:99:0:0%:53,46,0,0 -Example1_ref 2344 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:99,82,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 2345 . T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:100,82,0,0 0/0:.:101:101:0:0%:56,45,0,0 -Example1_ref 2346 . T . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:98,83,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 2347 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:98,83,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 2348 . C . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:98,78,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 2349 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:96,81,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 2350 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:95,79,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 2351 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:98,75,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 2352 . T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:98,80,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 2353 . G T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=6.3406E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:96,78,1,0 0/0:.:101:101:0:0%:56,45,0,0 -Example1_ref 2354 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:99,78,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 2355 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:100,81,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 2356 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:104,81,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 2357 . C A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=3.5517E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:107,80,0,0 0/0:.:103:102:1:0.97%:57,45,0,1 -Example1_ref 2358 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:108,82,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 2359 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:110,80,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 2360 . C A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=6.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:187:1:0.53%:105,82,1,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 2361 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:108,83,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 2362 . G GAGAC . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=6.4407E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:107,82,0,1 0/0:.:105:105:0:0%:58,47,0,0 -Example1_ref 2363 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:108,82,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 2364 . T C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=6.5411E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:108,82,1,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 2365 . G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:110,79,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 2366 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:110,79,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 2367 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:107,79,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 2368 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:106:106:0:0%:58,48,0,0 -Example1_ref 2369 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:108,79,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 2370 . A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:108,78,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 2371 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:106,76,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 2372 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:107,78,0,0 0/0:.:106:106:0:0%:58,48,0,0 -Example1_ref 2373 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:107,78,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 2374 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:108,77,0,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 2375 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:107,76,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 2376 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:109,75,0,0 0/0:.:104:104:0:0%:59,45,0,0 -Example1_ref 2377 . A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:108,75,0,0 0/0:.:106:106:0:0%:60,46,0,0 -Example1_ref 2378 . T C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=6.3668E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:108,75,1,0 0/0:.:105:105:0:0%:60,45,0,0 -Example1_ref 2379 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:108,75,0,0 0/0:.:107:107:0:0%:61,46,0,0 -Example1_ref 2380 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:108,75,0,0 0/0:.:103:103:0:0%:60,43,0,0 -Example1_ref 2381 . T C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=6.3415E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:105,76,1,0 0/0:.:105:105:0:0%:59,46,0,0 -Example1_ref 2382 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:105,77,0,0 0/0:.:105:105:0:0%:60,45,0,0 -Example1_ref 2383 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:106,77,0,0 0/0:.:100:100:0:0%:56,44,0,0 -Example1_ref 2384 . T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:106,74,0,0 0/0:.:107:107:0:0%:60,47,0,0 -Example1_ref 2385 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:102,75,0,0 0/0:.:105:105:0:0%:58,47,0,0 -Example1_ref 2386 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:97,74,0,0 0/0:.:101:101:0:0%:56,45,0,0 -Example1_ref 2387 . G . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:99,71,0,0 0/0:.:103:103:0:0%:59,44,0,0 -Example1_ref 2388 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:97,71,0,0 0/0:.:98:98:0:0%:54,44,0,0 -Example1_ref 2389 . A G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=6.3433E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:100,69,0,1 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 2390 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:103,71,0,0 0/0:.:102:102:0:0%:57,45,0,0 -Example1_ref 2391 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:102,67,0,0 0/0:.:96:96:0:0%:57,39,0,0 -Example1_ref 2392 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:102,70,0,0 0/0:.:105:105:0:0%:59,46,0,0 -Example1_ref 2393 . G . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:104,71,0,0 0/0:.:104:104:0:0%:59,45,0,0 -Example1_ref 2394 . T C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=3.7184E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:103,71,0,0 0/0:.:103:102:1:0.97%:59,43,0,1 -Example1_ref 2395 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:100,71,0,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 2396 . G T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=3.7407E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:100,69,0,0 0/0:.:101:100:1:0.99%:57,43,1,0 -Example1_ref 2397 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:100,68,0,0 0/0:.:100:100:0:0%:56,44,0,0 -Example1_ref 2398 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:100:100:0:0%:57,43,0,0 -Example1_ref 2399 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:100,67,0,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 2400 . G . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:101,67,0,0 0/0:.:105:105:0:0%:59,46,0,0 -Example1_ref 2401 . A T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1.4814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:99,68,0,0 0/0:.:105:103:2:1.9%:57,46,1,1 -Example1_ref 2402 . A T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=6.1993E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:99,68,1,0 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 2403 . G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:101,66,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 2404 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 2405 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 2406 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:96,68,0,0 0/0:.:105:105:0:0%:58,47,0,0 -Example1_ref 2407 . A T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=3.8519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:96,70,0,0 0/0:.:104:103:1:0.96%:55,48,1,0 -Example1_ref 2408 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:97,70,0,0 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 2409 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:96,67,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 2410 . T C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=3.6965E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:93,69,0,0 0/0:.:95:94:1:1.05%:51,43,1,0 -Example1_ref 2411 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 2412 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:95,71,0,0 0/0:.:107:107:0:0%:57,50,0,0 -Example1_ref 2413 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:91,73,0,0 0/0:.:110:110:0:0%:57,53,0,0 -Example1_ref 2414 . T G . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=6.2863E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:95,73,1,0 0/0:.:108:107:1:0.93%:58,49,0,1 -Example1_ref 2415 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:112:112:0:0%:59,53,0,0 -Example1_ref 2416 . AC A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=6.014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:97,74,0,1 0/0:.:114:114:0:0%:59,55,0,0 -Example1_ref 2417 . C CTGTCTCTT . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=6.0219E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:1:0.61%:92,72,1,0 0/0:.:109:109:0:0%:57,52,0,0 -Example1_ref 2418 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:92,75,0,0 0/0:.:108:108:0:0%:55,53,0,0 -Example1_ref 2419 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:0:0%:93,73,0,0 0/0:.:110:110:0:0%:60,50,0,0 -Example1_ref 2420 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:0:0%:94,74,0,0 0/0:.:113:113:0:0%:59,54,0,0 -Example1_ref 2421 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:97,73,0,0 0/0:.:110:110:0:0%:62,48,0,0 -Example1_ref 2422 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:95,72,0,0 0/0:.:110:110:0:0%:58,52,0,0 -Example1_ref 2423 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:116:116:0:0%:62,54,0,0 -Example1_ref 2424 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:97,67,0,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 2425 . G A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=6.1194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:163:1:0.61%:93,70,0,1 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 2426 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:92,71,0,0 0/0:.:108:108:0:0%:54,54,0,0 -Example1_ref 2427 . AG A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=5.9712E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:95,70,1,0 0/0:.:112:112:0:0%:58,54,0,0 -Example1_ref 2428 . G A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=6E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:158:1:0.63%:92,66,0,1 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 2429 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 2430 . C . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:94,67,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 2431 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:107:107:0:0%:55,52,0,0 -Example1_ref 2432 . A T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=3.9852E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:93,70,0,0 0/0:.:108:107:1:0.93%:57,50,0,1 -Example1_ref 2433 . C . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:106:106:0:0%:58,48,0,0 -Example1_ref 2434 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:90,72,0,0 0/0:.:109:109:0:0%:58,51,0,0 -Example1_ref 2435 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:90,72,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 2436 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:89,72,0,0 0/0:.:109:109:0:0%:58,51,0,0 -Example1_ref 2437 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:91,71,0,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 2438 . G . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:92,70,0,0 0/0:.:105:105:0:0%:54,51,0,0 -Example1_ref 2439 . A G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=6.0837E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:90,69,0,1 0/0:.:103:103:0:0%:52,51,0,0 -Example1_ref 2440 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 2441 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 2442 . T TA . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=2.6606E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:151:3:1.95%:84,67,2,1 0/0:.:99:94:4:4.08%:46,48,1,3 -Example1_ref 2443 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:89,69,0,0 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 2444 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:87,69,0,0 0/0:.:100:100:0:0%:49,51,0,0 -Example1_ref 2445 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:103:103:0:0%:52,51,0,0 -Example1_ref 2446 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:100:100:0:0%:49,51,0,0 -Example1_ref 2447 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:0:0%:84,67,0,0 0/0:.:100:99:0:0%:52,47,0,0 -Example1_ref 2448 . A AGG . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1.5202E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:85,66,0,0 0/0:.:98:95:2:2.06%:48,47,2,0 -Example1_ref 2449 . G A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=3.9669E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:79,67,0,0 0/0:.:96:95:1:1.04%:44,51,1,0 -Example1_ref 2450 . G T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=3.9831E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:75,67,0,0 0/0:.:94:93:1:1.06%:44,49,0,1 -Example1_ref 2451 . G A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=3.8372E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:145:2:1.36%:78,67,1,1 0/0:.:90:90:0:0%:40,50,0,0 -Example1_ref 2452 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:76,68,0,0 0/0:.:97:97:0:0%:47,50,0,0 -Example1_ref 2453 . G GA . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=6.0996E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:76,70,1,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 2454 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:72,67,0,0 0/0:.:97:97:0:0%:45,52,0,0 -Example1_ref 2455 . A C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=5.9259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:76,67,0,1 0/0:.:99:99:0:0%:46,53,0,0 -Example1_ref 2456 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:75,66,0,0 0/0:.:96:96:0:0%:44,52,0,0 -Example1_ref 2457 . A G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=5.9184E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:76,68,0,1 0/0:.:100:100:0:0%:45,55,0,0 -Example1_ref 2458 . G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:80,67,0,0 0/0:.:108:108:0:0%:55,53,0,0 -Example1_ref 2459 . G A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=5.8065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:75,68,1,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 2460 . G T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=6.8649E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:142:1:0.7%:74,68,1,0 0/0:.:112:111:1:0.89%:56,55,1,0 -Example1_ref 2461 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:74,71,0,0 0/0:.:111:111:0:0%:56,55,0,0 -Example1_ref 2462 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:76,71,0,0 0/0:.:111:111:0:0%:54,57,0,0 -Example1_ref 2463 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:78,72,0,0 0/0:.:117:117:0:0%:58,59,0,0 -Example1_ref 2464 . G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:81,72,0,0 0/0:.:116:116:0:0%:57,59,0,0 -Example1_ref 2465 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:81,80,0,0 0/0:.:118:118:0:0%:56,62,0,0 -Example1_ref 2466 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:78,78,0,0 0/0:.:118:118:0:0%:56,62,0,0 -Example1_ref 2467 . T C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=5.6226E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:148:1:0.67%:72,76,1,0 0/0:.:116:116:0:0%:56,60,0,0 -Example1_ref 2468 . G T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=4.3463E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:123:122:1:0.81%:61,61,0,1 -Example1_ref 2469 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:122:122:0:0%:60,62,0,0 -Example1_ref 2470 . T . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:83,79,0,0 0/0:.:119:119:0:0%:57,62,0,0 -Example1_ref 2471 . T C . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=3.2682E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:160:2:1.23%:81,79,2,0 0/0:.:121:121:0:0%:58,63,0,0 -Example1_ref 2472 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:81,78,0,0 0/0:.:118:118:0:0%:58,60,0,0 -Example1_ref 2473 . A T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=5.6944E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:85,78,0,1 0/0:.:124:124:0:0%:62,62,0,0 -Example1_ref 2474 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:86,79,0,0 0/0:.:122:122:0:0%:60,62,0,0 -Example1_ref 2475 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:123:123:0:0%:61,62,0,0 -Example1_ref 2476 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:124:123:0:0%:61,62,0,0 -Example1_ref 2477 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:82,77,0,0 0/0:.:123:123:0:0%:61,62,0,0 -Example1_ref 2478 . A C . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=5.614E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:83,76,0,1 0/0:.:125:125:0:0%:62,63,0,0 -Example1_ref 2479 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:83,75,0,0 0/0:.:126:126:0:0%:63,63,0,0 -Example1_ref 2480 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:129:129:0:0%:64,65,0,0 -Example1_ref 2481 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:131:131:0:0%:66,65,0,0 -Example1_ref 2482 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:129:129:0:0%:63,66,0,0 -Example1_ref 2483 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:130:130:0:0%:64,66,0,0 -Example1_ref 2484 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:85,80,0,0 0/0:.:126:126:0:0%:59,67,0,0 -Example1_ref 2485 . G . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:90,81,0,0 0/0:.:130:130:0:0%:61,69,0,0 -Example1_ref 2486 . A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:89,80,0,0 0/0:.:132:132:0:0%:64,68,0,0 -Example1_ref 2487 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:91,77,0,0 0/0:.:128:128:0:0%:61,67,0,0 -Example1_ref 2488 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:94,80,0,0 0/0:.:129:129:0:0%:61,68,0,0 -Example1_ref 2489 . C . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:93,79,0,0 0/0:.:130:130:0:0%:62,68,0,0 -Example1_ref 2490 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:129:129:0:0%:62,67,0,0 -Example1_ref 2491 . G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:0:0%:95,81,0,0 0/0:.:132:132:0:0%:61,71,0,0 -Example1_ref 2492 . A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:97,83,0,0 0/0:.:136:135:0:0%:61,74,0,0 -Example1_ref 2493 . C . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:95,81,0,0 0/0:.:135:135:0:0%:60,75,0,0 -Example1_ref 2494 . A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:97,84,0,0 0/0:.:138:138:0:0%:63,75,0,0 -Example1_ref 2495 . A G . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=4.3125E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:0:0%:98,84,0,0 0/0:.:138:137:1:0.72%:63,74,0,1 -Example1_ref 2496 . C A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=4.3887E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:0:0%:98,81,0,0 0/0:.:140:139:1:0.71%:67,72,0,1 -Example1_ref 2497 . C A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=4.4762E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:0:0%:90,84,0,0 0/0:.:141:140:1:0.71%:64,76,1,0 -Example1_ref 2498 . A AG . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=6.8456E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:98,86,0,1 0/0:.:144:143:1:0.69%:67,76,0,1 -Example1_ref 2499 . G T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=4.3027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:107,85,0,0 0/0:.:145:144:1:0.69%:70,74,1,0 -Example1_ref 2500 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:105,89,0,0 0/0:.:146:146:0:0%:70,76,0,0 -Example1_ref 2501 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:105,91,0,0 0/0:.:144:144:0:0%:66,78,0,0 -Example1_ref 2502 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:109,92,0,0 0/0:.:149:149:0:0%:72,77,0,0 -Example1_ref 2503 . T C . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=4.2433E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:105,89,0,0 0/0:.:143:142:1:0.7%:66,76,1,0 -Example1_ref 2504 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:0:0%:107,93,0,0 0/0:.:145:145:0:0%:66,79,0,0 -Example1_ref 2505 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:110,91,0,0 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 2506 . A . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:111,91,0,0 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 2507 . C . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:113,90,0,0 0/0:.:148:148:0:0%:70,78,0,0 -Example1_ref 2508 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:112,88,0,0 0/0:.:144:144:0:0%:68,76,0,0 -Example1_ref 2509 . T A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=5.8683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:109,86,0,1 0/0:.:138:138:0:0%:68,70,0,0 -Example1_ref 2510 . C A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=4.2643E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:105,86,0,0 0/0:.:142:141:1:0.7%:68,73,1,0 -Example1_ref 2511 . A C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=4.2105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:108,90,0,0 0/0:.:144:143:1:0.69%:70,73,1,0 -Example1_ref 2512 . G C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1.7827E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:106,89,0,0 0/0:.:143:141:2:1.4%:69,72,2,0 -Example1_ref 2513 . A ATCTGTC . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=5.7692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:105,89,1,0 0/0:.:143:143:0:0%:71,72,0,0 -Example1_ref 2514 . T G . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=5.9238E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:112,89,0,1 0/0:.:139:139:0:0%:69,70,0,0 -Example1_ref 2515 . C . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:115,90,0,0 0/0:.:148:148:0:0%:73,75,0,0 -Example1_ref 2516 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:113,91,0,0 0/0:.:146:146:0:0%:73,73,0,0 -Example1_ref 2517 . C . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:114,93,0,0 0/0:.:146:146:0:0%:72,74,0,0 -Example1_ref 2518 . A . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:116,92,0,0 0/0:.:149:149:0:0%:75,74,0,0 -Example1_ref 2519 . G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:111,92,0,0 0/0:.:149:149:0:0%:74,75,0,0 -Example1_ref 2520 . A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:115,95,0,0 0/0:.:151:151:0:0%:75,76,0,0 -Example1_ref 2521 . A . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:116,94,0,0 0/0:.:149:149:0:0%:74,75,0,0 -Example1_ref 2522 . C A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=4.0688E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:115,92,0,0 0/0:.:142:141:1:0.7%:71,70,0,1 -Example1_ref 2523 . C A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=4.2262E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:112,82,0,0 0/0:.:142:141:1:0.7%:70,71,0,1 -Example1_ref 2524 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:112,85,0,0 0/0:.:149:149:0:0%:74,75,0,0 -Example1_ref 2525 . C A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=4.1714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:117,87,0,0 0/0:.:146:145:1:0.68%:70,75,0,1 -Example1_ref 2526 . A T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=5.7703E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:116,89,1,0 0/0:.:151:151:0:0%:74,77,0,0 -Example1_ref 2527 . T A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=5.7759E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:113,87,1,0 0/0:.:147:147:0:0%:70,77,0,0 -Example1_ref 2528 . C . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:117,86,0,0 0/0:.:146:146:0:0%:71,75,0,0 -Example1_ref 2529 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:118,89,0,0 0/0:.:149:149:0:0%:72,77,0,0 -Example1_ref 2530 . A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:117,90,0,0 0/0:.:148:148:0:0%:71,77,0,0 -Example1_ref 2531 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:117,89,0,0 0/0:.:148:148:0:0%:70,78,0,0 -Example1_ref 2532 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:113,89,0,0 0/0:.:146:146:0:0%:69,77,0,0 -Example1_ref 2533 . G . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:116,89,0,0 0/0:.:142:142:0:0%:67,75,0,0 -Example1_ref 2534 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:115,85,0,0 0/0:.:140:140:0:0%:64,76,0,0 -Example1_ref 2535 . G A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=4.2229E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:111,86,0,0 0/0:.:144:143:1:0.69%:66,77,0,1 -Example1_ref 2536 . C A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=4.1499E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:115,88,0,0 0/0:.:144:143:1:0.69%:69,74,0,1 -Example1_ref 2537 . A T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=5.8192E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:119,86,0,1 0/0:.:148:148:0:0%:69,79,0,0 -Example1_ref 2538 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:117,88,0,0 0/0:.:147:147:0:0%:69,78,0,0 -Example1_ref 2539 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:114,86,0,0 0/0:.:148:148:0:0%:68,80,0,0 -Example1_ref 2540 . A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:118,86,0,0 0/0:.:151:151:0:0%:70,81,0,0 -Example1_ref 2541 . GA G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=5.7714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:115,86,0,1 0/0:.:148:148:0:0%:69,79,0,0 -Example1_ref 2542 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:114,84,0,0 0/0:.:145:145:0:0%:66,79,0,0 -Example1_ref 2543 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:114,84,0,0 0/0:.:146:146:0:0%:67,79,0,0 -Example1_ref 2544 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:113,84,0,0 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 2545 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:114,85,0,0 0/0:.:145:145:0:0%:68,77,0,0 -Example1_ref 2546 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:105,84,0,0 0/0:.:145:145:0:0%:70,75,0,0 -Example1_ref 2547 . C . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:106,84,0,0 0/0:.:147:147:0:0%:69,78,0,0 -Example1_ref 2548 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:102,84,0,0 0/0:.:146:146:0:0%:68,78,0,0 -Example1_ref 2549 . C . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:107,85,0,0 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 2550 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:109,84,0,0 0/0:.:148:148:0:0%:68,80,0,0 -Example1_ref 2551 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:108,86,0,0 0/0:.:148:148:0:0%:68,80,0,0 -Example1_ref 2552 . AAAC A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=5.6637E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:106,85,0,1 0/0:.:147:147:0:0%:68,79,0,0 -Example1_ref 2553 . A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:103,85,0,0 0/0:.:147:147:0:0%:66,81,0,0 -Example1_ref 2554 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:109,85,0,0 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 2555 . C . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:109,86,0,0 0/0:.:154:154:0:0%:69,85,0,0 -Example1_ref 2556 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:0:0%:110,83,0,0 0/0:.:154:154:0:0%:69,85,0,0 -Example1_ref 2557 . A . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:0:0%:110,86,0,0 0/0:.:154:154:0:0%:69,85,0,0 -Example1_ref 2558 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:110,85,0,0 0/0:.:153:153:0:0%:70,83,0,0 -Example1_ref 2559 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:108,87,0,0 0/0:.:151:151:0:0%:70,81,0,0 -Example1_ref 2560 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:113,87,0,0 0/0:.:158:158:0:0%:71,87,0,0 -Example1_ref 2561 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:116,87,0,0 0/0:.:161:161:0:0%:75,86,0,0 -Example1_ref 2562 . T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:117,85,0,0 0/0:.:161:161:0:0%:79,82,0,0 -Example1_ref 2563 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:0:0%:118,88,0,0 0/0:.:163:163:0:0%:78,85,0,0 -Example1_ref 2564 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:116,89,0,0 0/0:.:165:165:0:0%:78,87,0,0 -Example1_ref 2565 . C A . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=5.5795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:116,90,1,0 0/0:.:164:164:0:0%:78,86,0,0 -Example1_ref 2566 . A T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=4.4293E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:117,88,0,0 0/0:.:163:162:1:0.61%:76,86,1,0 -Example1_ref 2567 . A . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:118,89,0,0 0/0:.:164:164:0:0%:78,86,0,0 -Example1_ref 2568 . C A . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=3.1294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:208:2:0.95%:118,90,2,0 0/0:.:165:165:0:0%:79,86,0,0 -Example1_ref 2569 . A . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:123,88,0,0 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 2570 . C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:120,91,0,0 0/0:.:163:163:0:0%:80,83,0,0 -Example1_ref 2571 . C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:119,91,0,0 0/0:.:162:162:0:0%:80,82,0,0 -Example1_ref 2572 . G . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:119,92,0,0 0/0:.:162:162:0:0%:78,84,0,0 -Example1_ref 2573 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:122,92,0,0 0/0:.:166:166:0:0%:82,84,0,0 -Example1_ref 2574 . C . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:124,92,0,0 0/0:.:166:166:0:0%:83,83,0,0 -Example1_ref 2575 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:128,93,0,0 0/0:.:166:166:0:0%:82,84,0,0 -Example1_ref 2576 . C CCTG . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=5.6959E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:127,93,1,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 2577 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:127,92,0,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 2578 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:127,92,0,0 0/0:.:165:165:0:0%:82,83,0,0 -Example1_ref 2579 . A G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=4.3158E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:124,92,0,0 0/0:.:164:163:1:0.61%:79,84,1,0 -Example1_ref 2580 . G A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=5.5585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:116,92,1,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 2581 . G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:110,92,0,0 0/0:.:164:164:0:0%:81,83,0,0 -Example1_ref 2582 . G A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=4.3784E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:119,89,0,0 0/0:.:162:161:1:0.62%:83,78,0,1 -Example1_ref 2583 . G . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:120,90,0,0 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 2584 . C A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=4.3883E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:120,91,0,0 0/0:.:165:164:1:0.61%:82,82,0,1 -Example1_ref 2585 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:124,92,0,0 0/0:.:172:172:0:0%:88,84,0,0 -Example1_ref 2586 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:121,92,0,0 0/0:.:166:166:0:0%:86,80,0,0 -Example1_ref 2587 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:126,94,0,0 0/0:.:170:170:0:0%:86,84,0,0 -Example1_ref 2588 . C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:125,94,0,0 0/0:.:177:177:0:0%:95,82,0,0 -Example1_ref 2589 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:128,93,0,0 0/0:.:179:179:0:0%:96,83,0,0 -Example1_ref 2590 . G T . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=5.5919E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:128,93,1,0 0/0:.:175:175:0:0%:95,80,0,0 -Example1_ref 2591 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:132,93,0,0 0/0:.:182:182:0:0%:98,84,0,0 -Example1_ref 2592 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:134,93,0,0 0/0:.:181:181:0:0%:98,83,0,0 -Example1_ref 2593 . A T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=5.6436E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:135,92,0,1 0/0:.:176:176:0:0%:96,80,0,0 -Example1_ref 2594 . T C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=5.6174E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:231:1:0.43%:138,93,0,1 0/0:.:181:181:0:0%:98,83,0,0 -Example1_ref 2595 . A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:137,93,0,0 0/0:.:181:181:0:0%:99,82,0,0 -Example1_ref 2596 . C CCTGTCTCTTAT . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=5.5961E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:135,94,1,0 0/0:.:181:181:0:0%:97,84,0,0 -Example1_ref 2597 . A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:0:0%:136,91,0,0 0/0:.:183:183:0:0%:100,83,0,0 -Example1_ref 2598 . G A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=5.5501E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:135,91,0,1 0/0:.:182:182:0:0%:100,82,0,0 -Example1_ref 2599 . G T . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=5.4937E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:126,90,1,0 0/0:.:178:178:0:0%:96,82,0,0 -Example1_ref 2600 . C . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:133,91,0,0 0/0:.:177:177:0:0%:95,82,0,0 -Example1_ref 2601 . A ACT . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=5.6174E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:139,92,1,0 0/0:.:181:181:0:0%:98,83,0,0 -Example1_ref 2602 . G T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=4.4279E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:132,92,0,0 0/0:.:178:177:1:0.56%:94,83,1,0 -Example1_ref 2603 . A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:137,91,0,0 0/0:.:183:183:0:0%:98,85,0,0 -Example1_ref 2604 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:145,92,0,0 0/0:.:184:184:0:0%:98,86,0,0 -Example1_ref 2605 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:145,102,0,0 0/0:.:187:187:0:0%:97,90,0,0 -Example1_ref 2606 . C . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:140,104,0,0 0/0:.:189:189:0:0%:99,90,0,0 -Example1_ref 2607 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:146,104,0,0 0/0:.:192:192:0:0%:101,91,0,0 -Example1_ref 2608 . T . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:142,105,0,0 0/0:.:186:186:0:0%:99,87,0,0 -Example1_ref 2609 . C A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=4.3182E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:143,107,0,0 0/0:.:190:189:1:0.53%:100,89,0,1 -Example1_ref 2610 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:253:0:0%:144,109,0,0 0/0:.:192:192:0:0%:100,92,0,0 -Example1_ref 2611 . G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:143,111,0,0 0/0:.:188:187:0:0%:96,91,0,0 -Example1_ref 2612 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:141,110,0,0 0/0:.:191:191:0:0%:101,90,0,0 -Example1_ref 2613 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:144,110,0,0 0/0:.:190:190:0:0%:98,92,0,0 -Example1_ref 2614 . A . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:148,111,0,0 0/0:.:192:192:0:0%:100,92,0,0 -Example1_ref 2615 . C A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=5.708E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:146,111,1,0 0/0:.:194:194:0:0%:101,93,0,0 -Example1_ref 2616 . A . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:149,109,0,0 0/0:.:193:193:0:0%:100,93,0,0 -Example1_ref 2617 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:148,110,0,0 0/0:.:192:192:0:0%:100,92,0,0 -Example1_ref 2618 . A C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=4.207E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:152,111,0,0 0/0:.:191:190:1:0.52%:99,91,1,0 -Example1_ref 2619 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:154,109,0,0 0/0:.:194:194:0:0%:101,93,0,0 -Example1_ref 2620 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:153,109,0,0 0/0:.:196:196:0:0%:102,94,0,0 -Example1_ref 2621 . C . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:0:0%:150,108,0,0 0/0:.:194:193:0:0%:101,92,0,0 -Example1_ref 2622 . T A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=6.6496E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:149,102,1,0 0/0:.:183:182:1:0.55%:98,84,1,0 -Example1_ref 2623 . C A . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=5.6587E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:153,108,0,1 0/0:.:201:201:0:0%:106,95,0,0 -Example1_ref 2624 . C . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:155,109,0,0 0/0:.:202:202:0:0%:106,96,0,0 -Example1_ref 2625 . A T . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=4.2495E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:161,111,0,0 0/0:.:201:200:1:0.5%:107,93,1,0 -Example1_ref 2626 . T A . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=5.828E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:160,110,1,0 0/0:.:194:194:0:0%:105,89,0,0 -Example1_ref 2627 . C T . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=5.7796E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:164,113,1,0 0/0:.:203:203:0:0%:108,95,0,0 -Example1_ref 2628 . AT A . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=5.7764E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:163,115,1,0 0/0:.:204:204:0:0%:111,93,0,0 -Example1_ref 2629 . T C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=5.7474E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:272:1:0.37%:159,113,1,0 0/0:.:202:202:0:0%:109,93,0,0 -Example1_ref 2630 . G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:162,111,0,0 0/0:.:205:205:0:0%:110,95,0,0 -Example1_ref 2631 . G A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=6.6777E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:158,115,1,0 0/0:.:201:200:1:0.5%:108,92,0,1 -Example1_ref 2632 . A . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:164,115,0,0 0/0:.:202:202:0:0%:110,92,0,0 -Example1_ref 2633 . A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:165,115,0,0 0/0:.:199:199:0:0%:108,91,0,0 -Example1_ref 2634 . T . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:169,114,0,0 0/0:.:201:201:0:0%:110,91,0,0 -Example1_ref 2635 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:165,110,0,0 0/0:.:201:201:0:0%:111,90,0,0 -Example1_ref 2636 . T C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=5.7734E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:264:1:0.38%:154,110,0,1 0/0:.:194:194:0:0%:107,87,0,0 -Example1_ref 2637 . C . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:163,110,0,0 0/0:.:193:193:0:0%:104,89,0,0 -Example1_ref 2638 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:169,115,0,0 0/0:.:206:206:0:0%:113,93,0,0 -Example1_ref 2639 . C . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:166,113,0,0 0/0:.:202:202:0:0%:111,91,0,0 -Example1_ref 2640 . C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:280:0:0%:164,116,0,0 0/0:.:201:200:0:0%:107,93,0,0 -Example1_ref 2641 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:169,115,0,0 0/0:.:206:206:0:0%:113,93,0,0 -Example1_ref 2642 . T . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:169,112,0,0 0/0:.:204:204:0:0%:112,92,0,0 -Example1_ref 2643 . T A . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=4.1822E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:169,112,0,0 0/0:.:202:201:1:0.5%:112,89,0,1 -Example1_ref 2644 . G A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=5.814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:274:1:0.36%:162,112,1,0 0/0:.:198:198:0:0%:106,92,0,0 -Example1_ref 2645 . AC A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=4.1935E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:173,115,0,0 0/0:.:208:207:1:0.48%:111,96,1,0 -Example1_ref 2646 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:0:0%:179,112,0,0 0/0:.:214:213:0:0%:118,95,0,0 -Example1_ref 2647 . A . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:179,115,0,0 0/0:.:215:214:0:0%:117,97,0,0 -Example1_ref 2648 . A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:173,116,0,0 0/0:.:208:207:0:0%:111,96,0,0 -Example1_ref 2649 . C . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:178,116,0,0 0/0:.:207:207:0:0%:111,96,0,0 -Example1_ref 2650 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:175,117,0,0 0/0:.:204:204:0:0%:109,95,0,0 -Example1_ref 2651 . A . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:174,119,0,0 0/0:.:212:211:0:0%:112,99,0,0 -Example1_ref 2652 . C T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=4.16E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:175,117,0,0 0/0:.:208:207:1:0.48%:110,97,1,0 -Example1_ref 2653 . A . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:174,115,0,0 0/0:.:206:206:0:0%:111,95,0,0 -Example1_ref 2654 . C . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:174,117,0,0 0/0:.:204:204:0:0%:110,94,0,0 -Example1_ref 2655 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:172,111,0,0 0/0:.:195:195:0:0%:109,86,0,0 -Example1_ref 2656 . G T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=6.5405E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:165,113,1,0 0/0:.:195:194:1:0.51%:104,90,1,0 -Example1_ref 2657 . A C . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=5.823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:282:1:0.35%:172,110,1,0 0/0:.:203:203:0:0%:111,92,0,0 -Example1_ref 2658 . C T . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=6.561E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:276:1:0.36%:167,109,1,0 0/0:.:195:194:1:0.51%:105,89,1,0 -Example1_ref 2659 . C . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:166,112,0,0 0/0:.:195:195:0:0%:104,91,0,0 -Example1_ref 2660 . G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:163,112,0,0 0/0:.:189:189:0:0%:103,86,0,0 -Example1_ref 2661 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:169,110,0,0 0/0:.:191:191:0:0%:105,86,0,0 -Example1_ref 2662 . G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:170,113,0,0 0/0:.:191:191:0:0%:102,89,0,0 -Example1_ref 2663 . C A . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=4.0252E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:169,116,0,0 0/0:.:192:191:1:0.52%:102,89,0,1 -Example1_ref 2664 . T C . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=5.9539E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:165,118,1,0 0/0:.:193:193:0:0%:104,89,0,0 -Example1_ref 2665 . G . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:170,116,0,0 0/0:.:199:199:0:0%:108,91,0,0 -Example1_ref 2666 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:173,118,0,0 0/0:.:197:197:0:0%:106,91,0,0 -Example1_ref 2667 . A ACCTGT . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=3.5166E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:287:2:0.69%:165,122,2,0 0/0:.:198:198:0:0%:107,91,0,0 -Example1_ref 2668 . C G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=5.9459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:285:1:0.35%:165,120,0,1 0/0:.:195:195:0:0%:106,89,0,0 -Example1_ref 2669 . A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:167,120,0,0 0/0:.:192:192:0:0%:105,87,0,0 -Example1_ref 2670 . G . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:161,121,0,0 0/0:.:193:193:0:0%:108,85,0,0 -Example1_ref 2671 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:166,122,0,0 0/0:.:190:190:0:0%:105,85,0,0 -Example1_ref 2672 . C CAG . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=5.9834E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:166,122,0,1 0/0:.:194:194:0:0%:109,85,0,0 -Example1_ref 2673 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:167,119,0,0 0/0:.:194:194:0:0%:108,86,0,0 -Example1_ref 2674 . A . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:0:0%:166,118,0,0 0/0:.:192:192:0:0%:108,84,0,0 -Example1_ref 2675 . G GCTGT . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=4.0605E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:157,118,0,0 0/0:.:188:187:1:0.53%:104,83,1,0 -Example1_ref 2676 . C . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:161,114,0,0 0/0:.:188:188:0:0%:103,85,0,0 -Example1_ref 2677 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:157,118,0,0 0/0:.:189:189:0:0%:103,86,0,0 -Example1_ref 2678 . C CCTGTCTCTT . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=4.0998E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:272:0:0%:155,117,0,0 0/0:.:189:188:1:0.53%:104,84,1,0 -Example1_ref 2679 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:157,112,0,0 0/0:.:187:187:0:0%:104,83,0,0 -Example1_ref 2680 . A G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=6.5645E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:155,115,1,0 0/0:.:191:190:1:0.52%:106,84,1,0 -Example1_ref 2681 . C . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:160,113,0,0 0/0:.:184:184:0:0%:103,81,0,0 -Example1_ref 2682 . T A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=3.9908E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:153,109,0,0 0/0:.:174:173:1:0.57%:103,70,0,1 -Example1_ref 2683 . C A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=5.9459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:1:0.38%:153,110,0,1 0/0:.:180:180:0:0%:106,74,0,0 -Example1_ref 2684 . C CTG . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=3.525E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:263:2:0.75%:159,104,2,0 0/0:.:181:181:0:0%:105,76,0,0 -Example1_ref 2685 . T A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=3.4514E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:252:2:0.79%:150,102,2,0 0/0:.:178:178:0:0%:104,74,0,0 -Example1_ref 2686 . C . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:0:0%:161,109,0,0 0/0:.:184:184:0:0%:107,77,0,0 -Example1_ref 2687 . C T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=5.8705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:155,107,1,0 0/0:.:185:185:0:0%:108,77,0,0 -Example1_ref 2688 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:157,106,0,0 0/0:.:187:187:0:0%:108,79,0,0 -Example1_ref 2689 . A AC . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=5.8652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:150,110,1,0 0/0:.:184:184:0:0%:104,80,0,0 -Example1_ref 2690 . C T . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=5.8652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:151,109,0,1 0/0:.:184:184:0:0%:106,78,0,0 -Example1_ref 2691 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:149,102,0,0 0/0:.:177:177:0:0%:105,72,0,0 -Example1_ref 2692 . G A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=5.8057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:244:1:0.41%:139,105,1,0 0/0:.:177:177:0:0%:103,74,0,0 -Example1_ref 2693 . C A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=4.2243E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:141,101,0,0 0/0:.:177:176:1:0.56%:103,73,0,1 -Example1_ref 2694 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:138,105,0,0 0/0:.:175:175:0:0%:101,74,0,0 -Example1_ref 2695 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:140,107,0,0 0/0:.:180:180:0:0%:105,75,0,0 -Example1_ref 2696 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:149,101,0,0 0/0:.:184:184:0:0%:110,74,0,0 -Example1_ref 2697 . T C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=4.1866E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:142,101,0,0 0/0:.:175:174:1:0.57%:105,69,1,0 -Example1_ref 2698 . C A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=6.6097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:146,103,1,0 0/0:.:180:178:1:0.56%:107,71,0,1 -Example1_ref 2699 . C . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:146,101,0,0 0/0:.:178:177:0:0%:105,72,0,0 -Example1_ref 2700 . C . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:147,106,0,0 0/0:.:179:179:0:0%:106,73,0,0 -Example1_ref 2701 . A G . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=3.4449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:250:2:0.79%:146,104,2,0 0/0:.:177:177:0:0%:105,72,0,0 -Example1_ref 2702 . G . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:143,105,0,0 0/0:.:173:173:0:0%:102,71,0,0 -Example1_ref 2703 . A ATCTTTC . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=4.1135E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:142,107,0,0 0/0:.:174:173:1:0.57%:102,71,1,0 -Example1_ref 2704 . T A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=5.8621E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:237:1:0.42%:133,104,0,1 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 2705 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:140,103,0,0 0/0:.:165:165:0:0%:96,69,0,0 -Example1_ref 2706 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:142,103,0,0 0/0:.:168:168:0:0%:99,69,0,0 -Example1_ref 2707 . A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:140,104,0,0 0/0:.:167:167:0:0%:100,67,0,0 -Example1_ref 2708 . C T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=5.9466E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:143,101,1,0 0/0:.:167:167:0:0%:101,66,0,0 -Example1_ref 2709 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:144,106,0,0 0/0:.:168:168:0:0%:99,69,0,0 -Example1_ref 2710 . A AG . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=5.933E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:140,107,0,1 0/0:.:170:170:0:0%:101,69,0,0 -Example1_ref 2711 . G GA . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=4.0587E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:135,108,0,0 0/0:.:166:165:1:0.6%:99,66,0,1 -Example1_ref 2712 . C A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=5.9294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:251:1:0.4%:140,111,1,0 0/0:.:173:173:0:0%:104,69,0,0 -Example1_ref 2713 . A AG . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=4.0465E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:141,115,0,0 0/0:.:174:173:1:0.57%:103,70,0,1 -Example1_ref 2714 . C . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:144,114,0,0 0/0:.:171:171:0:0%:102,69,0,0 -Example1_ref 2715 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:136,112,0,0 0/0:.:172:172:0:0%:103,69,0,0 -Example1_ref 2716 . A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:136,115,0,0 0/0:.:168:168:0:0%:98,70,0,0 -Example1_ref 2717 . A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:136,115,0,0 0/0:.:168:168:0:0%:97,71,0,0 -Example1_ref 2718 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:139,115,0,0 0/0:.:173:173:0:0%:102,71,0,0 -Example1_ref 2719 . G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:130,114,0,0 0/0:.:169:169:0:0%:99,70,0,0 -Example1_ref 2720 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:135,112,0,0 0/0:.:171:171:0:0%:100,71,0,0 -Example1_ref 2721 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:137,113,0,0 0/0:.:174:174:0:0%:103,71,0,0 -Example1_ref 2722 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:131,106,0,0 0/0:.:169:169:0:0%:100,69,0,0 -Example1_ref 2723 . C A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=4.1346E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:135,109,0,0 0/0:.:172:171:1:0.58%:103,68,0,1 -Example1_ref 2724 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:136,112,0,0 0/0:.:168:168:0:0%:99,69,0,0 -Example1_ref 2725 . A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:136,112,0,0 0/0:.:175:175:0:0%:103,72,0,0 -Example1_ref 2726 . T G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=4.1709E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:129,103,0,0 0/0:.:166:165:1:0.6%:99,66,0,1 -Example1_ref 2727 . C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:132,114,0,0 0/0:.:168:168:0:0%:100,68,0,0 -Example1_ref 2728 . C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:130,115,0,0 0/0:.:169:169:0:0%:100,69,0,0 -Example1_ref 2729 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:134,118,0,0 0/0:.:166:166:0:0%:95,71,0,0 -Example1_ref 2730 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:137,118,0,0 0/0:.:170:170:0:0%:97,73,0,0 -Example1_ref 2731 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:137,117,0,0 0/0:.:173:173:0:0%:99,74,0,0 -Example1_ref 2732 . C A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=4.0471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:137,116,0,0 0/0:.:172:171:1:0.58%:99,72,0,1 -Example1_ref 2733 . A T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=4.0972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:137,118,0,0 0/0:.:177:176:1:0.56%:98,78,1,0 -Example1_ref 2734 . A C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=6.0092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:139,122,1,0 0/0:.:174:174:0:0%:97,77,0,0 -Example1_ref 2735 . A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:136,123,0,0 0/0:.:176:176:0:0%:100,76,0,0 -Example1_ref 2736 . C . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:139,123,0,0 0/0:.:177:177:0:0%:102,75,0,0 -Example1_ref 2737 . T A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=6.0391E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:132,114,0,1 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 2738 . C A . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=3.51E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:131,128,1,0 0/0:.:173:171:2:1.16%:93,78,2,0 -Example1_ref 2739 . T G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=3.9813E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:0:0%:133,124,0,0 0/0:.:170:169:1:0.59%:91,78,0,1 -Example1_ref 2740 . G A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=3.986E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:133,125,0,0 0/0:.:172:170:1:0.58%:92,78,0,1 -Example1_ref 2741 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:136,126,0,0 0/0:.:178:178:0:0%:98,80,0,0 -Example1_ref 2742 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:139,127,0,0 0/0:.:180:180:0:0%:99,81,0,0 -Example1_ref 2743 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:135,126,0,0 0/0:.:173:173:0:0%:97,76,0,0 -Example1_ref 2744 . C . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:135,129,0,0 0/0:.:176:176:0:0%:97,79,0,0 -Example1_ref 2745 . C . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:0:0%:130,129,0,0 0/0:.:175:175:0:0%:98,77,0,0 -Example1_ref 2746 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:136,130,0,0 0/0:.:178:178:0:0%:100,78,0,0 -Example1_ref 2747 . A . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:135,132,0,0 0/0:.:174:174:0:0%:97,77,0,0 -Example1_ref 2748 . G . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:131,133,0,0 0/0:.:173:173:0:0%:97,76,0,0 -Example1_ref 2749 . C A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=7.8249E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:257:2:0.77%:127,130,2,0 0/0:.:171:170:1:0.58%:98,72,0,1 -Example1_ref 2750 . C . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:130,132,0,0 0/0:.:171:171:0:0%:96,75,0,0 -Example1_ref 2751 . C A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=3.9529E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:129,128,0,0 0/0:.:168:167:1:0.6%:94,73,0,1 -Example1_ref 2752 . A AAGAGAC . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=3.954E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:130,133,0,0 0/0:.:172:171:1:0.58%:94,77,0,1 -Example1_ref 2753 . A . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:127,135,0,0 0/0:.:171:171:0:0%:93,78,0,0 -Example1_ref 2754 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:120,133,0,0 0/0:.:163:163:0:0%:86,77,0,0 -Example1_ref 2755 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:125,136,0,0 0/0:.:176:176:0:0%:96,80,0,0 -Example1_ref 2756 . C A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=5.977E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:259:1:0.38%:126,133,1,0 0/0:.:175:175:0:0%:96,79,0,0 -Example1_ref 2757 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:128,134,0,0 0/0:.:175:175:0:0%:95,80,0,0 -Example1_ref 2758 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:122,134,0,0 0/0:.:170:170:0:0%:94,76,0,0 -Example1_ref 2759 . A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:0:0%:119,132,0,0 0/0:.:171:171:0:0%:90,81,0,0 -Example1_ref 2760 . A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:119,134,0,0 0/0:.:170:170:0:0%:89,81,0,0 -Example1_ref 2761 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:120,133,0,0 0/0:.:169:169:0:0%:88,81,0,0 -Example1_ref 2762 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:118,138,0,0 0/0:.:171:171:0:0%:92,79,0,0 -Example1_ref 2763 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:110,137,0,0 0/0:.:169:169:0:0%:87,82,0,0 -Example1_ref 2764 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:0:0%:119,136,0,0 0/0:.:172:172:0:0%:89,83,0,0 -Example1_ref 2765 . C A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=5.8852E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:115,130,0,1 0/0:.:172:172:0:0%:90,82,0,0 -Example1_ref 2766 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:119,136,0,0 0/0:.:174:174:0:0%:92,82,0,0 -Example1_ref 2767 . A G . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=6.4287E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:116,133,0,1 0/0:.:169:167:1:0.6%:86,81,0,1 -Example1_ref 2768 . A ACTGTCTCT . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=3.9443E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:124,137,0,0 0/0:.:170:169:1:0.59%:86,83,1,0 -Example1_ref 2769 . T A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=5.9903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:115,132,1,0 0/0:.:166:166:0:0%:85,81,0,0 -Example1_ref 2770 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:120,133,0,0 0/0:.:165:165:0:0%:83,82,0,0 -Example1_ref 2771 . GA G . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=6.2878E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:112,137,1,0 0/0:.:161:159:1:0.62%:77,82,1,0 -Example1_ref 2772 . A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:120,137,0,0 0/0:.:158:158:0:0%:78,80,0,0 -Example1_ref 2773 . A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:123,138,0,0 0/0:.:162:162:0:0%:80,82,0,0 -Example1_ref 2774 . A G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=3.8756E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:119,137,0,0 0/0:.:162:161:1:0.62%:81,80,0,1 -Example1_ref 2775 . G C . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=6.1165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:251:1:0.4%:118,133,1,0 0/0:.:160:160:0:0%:80,80,0,0 -Example1_ref 2776 . G T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=3.8406E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:117,138,0,0 0/0:.:159:158:1:0.63%:76,82,1,0 -Example1_ref 2777 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:118,134,0,0 0/0:.:160:160:0:0%:79,81,0,0 -Example1_ref 2778 . A G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=3.9312E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:0:0%:109,138,0,0 0/0:.:160:159:1:0.62%:78,81,0,1 -Example1_ref 2779 . A G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=3.9078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:114,137,0,0 0/0:.:161:160:1:0.62%:77,83,1,0 -Example1_ref 2780 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:114,138,0,0 0/0:.:152:152:0:0%:72,80,0,0 -Example1_ref 2781 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:111,138,0,0 0/0:.:155:155:0:0%:76,79,0,0 -Example1_ref 2782 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:113,139,0,0 0/0:.:152:152:0:0%:74,78,0,0 -Example1_ref 2783 . AG A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=3.8806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:108,138,0,0 0/0:.:156:155:1:0.64%:76,79,0,1 -Example1_ref 2784 . G GCTGTCTCT . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=6.2095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:114,134,1,0 0/0:.:152:152:0:0%:74,78,0,0 -Example1_ref 2785 . G T . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=3.728E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:111,138,0,0 0/0:.:148:147:1:0.68%:72,75,0,1 -Example1_ref 2786 . AT A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=6.1758E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:259:1:0.38%:119,140,1,0 0/0:.:162:161:0:0%:79,82,0,0 -Example1_ref 2787 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:0:0%:118,141,0,0 0/0:.:158:158:0:0%:78,80,0,0 -Example1_ref 2788 . A T . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=6.259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:118,142,0,1 0/0:.:156:156:0:0%:74,82,0,0 -Example1_ref 2789 . C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:119,141,0,0 0/0:.:155:155:0:0%:74,81,0,0 -Example1_ref 2790 . A G . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=6.2651E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:119,140,1,0 0/0:.:155:155:0:0%:76,79,0,0 -Example1_ref 2791 . G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:110,140,0,0 0/0:.:152:152:0:0%:72,80,0,0 -Example1_ref 2792 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:109,140,0,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 2793 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:111,140,0,0 0/0:.:150:150:0:0%:72,78,0,0 -Example1_ref 2794 . G A . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=5.9564E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:104,140,1,0 0/0:.:140:139:1:0.71%:65,74,0,1 -Example1_ref 2795 . A G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=6.1308E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:102,122,1,0 0/0:.:142:142:0:0%:72,70,0,0 -Example1_ref 2796 . G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:102,118,0,0 0/0:.:132:132:0:0%:63,69,0,0 -Example1_ref 2797 . A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:101,121,0,0 0/0:.:139:139:0:0%:68,71,0,0 -Example1_ref 2798 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:104,117,0,0 0/0:.:137:137:0:0%:67,70,0,0 -Example1_ref 2799 . C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:104,121,0,0 0/0:.:137:137:0:0%:67,70,0,0 -Example1_ref 2800 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:108,119,0,0 0/0:.:138:138:0:0%:69,69,0,0 -Example1_ref 2801 . A . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:102,116,0,0 0/0:.:133:133:0:0%:63,70,0,0 -Example1_ref 2802 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:94,116,0,0 0/0:.:132:132:0:0%:66,66,0,0 -Example1_ref 2803 . C A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=3.8611E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:103,118,0,0 0/0:.:139:138:1:0.72%:68,70,1,0 -Example1_ref 2804 . G . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:101,119,0,0 0/0:.:135:135:0:0%:66,69,0,0 -Example1_ref 2805 . A C . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=3.8136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:103,116,0,0 0/0:.:136:134:1:0.74%:66,68,1,0 -Example1_ref 2806 . T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:99,114,0,0 0/0:.:130:129:0:0%:60,69,0,0 -Example1_ref 2807 . T . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:101,117,0,0 0/0:.:127:127:0:0%:61,66,0,0 -Example1_ref 2808 . T . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:101,118,0,0 0/0:.:128:128:0:0%:63,65,0,0 -Example1_ref 2809 . A G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=6.2703E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:103,128,1,0 0/0:.:138:138:0:0%:63,75,0,0 -Example1_ref 2810 . C . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:98,126,0,0 0/0:.:137:137:0:0%:63,74,0,0 -Example1_ref 2811 . A AGCT . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=6.1853E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:97,129,1,0 0/0:.:140:140:0:0%:65,75,0,0 -Example1_ref 2812 . G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:134:134:0:0%:60,74,0,0 -Example1_ref 2813 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:130:130:0:0%:58,72,0,0 -Example1_ref 2814 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:0:0%:90,126,0,0 0/0:.:130:130:0:0%:60,70,0,0 -Example1_ref 2815 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:0:0%:89,127,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 2816 . G . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:84,126,0,0 0/0:.:127:127:0:0%:57,70,0,0 -Example1_ref 2817 . G T . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=2.5056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:201:3:1.47%:80,121,2,1 0/0:.:119:119:0:0%:51,68,0,0 -Example1_ref 2818 . G T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=6.2229E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:200:1:0.5%:76,124,1,0 0/0:.:122:122:0:0%:51,71,0,0 -Example1_ref 2819 . C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:0:0%:82,120,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 2820 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:84,127,0,0 0/0:.:132:132:0:0%:61,71,0,0 -Example1_ref 2821 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:82,129,0,0 0/0:.:133:133:0:0%:61,72,0,0 -Example1_ref 2822 . T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:82,127,0,0 0/0:.:126:126:0:0%:58,68,0,0 -Example1_ref 2823 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:79,125,0,0 0/0:.:124:124:0:0%:57,67,0,0 -Example1_ref 2824 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:81,128,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 2825 . C A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=6.2798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:82,128,1,0 0/0:.:125:125:0:0%:55,70,0,0 -Example1_ref 2826 . T A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=3.7188E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:81,120,0,0 0/0:.:119:118:1:0.84%:55,63,1,0 -Example1_ref 2827 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:79,125,0,0 0/0:.:124:124:0:0%:58,66,0,0 -Example1_ref 2828 . T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:77,123,0,0 0/0:.:121:121:0:0%:55,66,0,0 -Example1_ref 2829 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:81,126,0,0 0/0:.:123:123:0:0%:57,66,0,0 -Example1_ref 2830 . T TC . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=3.7346E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:80,123,0,0 0/0:.:121:120:1:0.83%:55,65,1,0 -Example1_ref 2831 . T A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=6.2654E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:79,123,0,1 0/0:.:121:121:0:0%:56,65,0,0 -Example1_ref 2832 . G T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1.4136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:76,124,0,0 0/0:.:121:119:2:1.65%:53,66,2,0 -Example1_ref 2833 . C . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:74,124,0,0 0/0:.:121:121:0:0%:56,65,0,0 -Example1_ref 2834 . A T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=5.9614E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:75,125,0,1 0/0:.:115:114:1:0.87%:53,61,0,1 -Example1_ref 2835 . G . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:0:0%:67,122,0,0 0/0:.:111:111:0:0%:49,62,0,0 -Example1_ref 2836 . A T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=3.6842E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:68,124,0,0 0/0:.:112:111:1:0.89%:50,61,1,0 -Example1_ref 2837 . A G . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1.3586E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:68,123,0,0 0/0:.:112:110:2:1.79%:49,61,1,1 -Example1_ref 2838 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:67,121,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 2839 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:67,121,0,0 0/0:.:112:112:0:0%:52,60,0,0 -Example1_ref 2840 . T C . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=3.7627E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:64,120,0,0 0/0:.:111:110:1:0.9%:50,60,1,0 -Example1_ref 2841 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:67,120,0,0 0/0:.:109:109:0:0%:51,58,0,0 -Example1_ref 2842 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:65,122,0,0 0/0:.:108:108:0:0%:49,59,0,0 -Example1_ref 2843 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:66,121,0,0 0/0:.:108:108:0:0%:49,59,0,0 -Example1_ref 2844 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:69,122,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 2845 . G A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=3.5739E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:67,120,0,0 0/0:.:105:103:1:0.96%:46,57,1,0 -Example1_ref 2846 . T TA . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=5.8658E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:66,119,1,0 0/0:.:103:102:1:0.97%:45,57,1,0 -Example1_ref 2847 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:66,119,0,0 0/0:.:103:103:0:0%:45,58,0,0 -Example1_ref 2848 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:65,118,0,0 0/0:.:103:103:0:0%:46,57,0,0 -Example1_ref 2849 . T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:69,115,0,0 0/0:.:99:99:0:0%:44,55,0,0 -Example1_ref 2850 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:66,118,0,0 0/0:.:100:100:0:0%:42,58,0,0 -Example1_ref 2851 . C . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:66,117,0,0 0/0:.:100:100:0:0%:43,57,0,0 -Example1_ref 2852 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:68,115,0,0 0/0:.:100:100:0:0%:44,56,0,0 -Example1_ref 2853 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:67,115,0,0 0/0:.:100:100:0:0%:44,56,0,0 -Example1_ref 2854 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:66,111,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 2855 . C . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:61,114,0,0 0/0:.:90:90:0:0%:39,51,0,0 -Example1_ref 2856 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=3.3712E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:64,111,0,0 0/0:.:89:88:1:1.12%:37,51,0,1 -Example1_ref 2857 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:67,112,0,0 0/0:.:93:93:0:0%:39,54,0,0 -Example1_ref 2858 . C . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:67,113,0,0 0/0:.:91:91:0:0%:39,52,0,0 -Example1_ref 2859 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:67,112,0,0 0/0:.:94:94:0:0%:39,55,0,0 -Example1_ref 2860 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:65,109,0,0 0/0:.:92:92:0:0%:38,54,0,0 -Example1_ref 2861 . C A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=7.1844E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:174:2:1.14%:63,111,0,2 0/0:.:92:91:1:1.09%:37,54,1,0 -Example1_ref 2862 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:67,111,0,0 0/0:.:92:92:0:0%:38,54,0,0 -Example1_ref 2863 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:66,111,0,0 0/0:.:90:90:0:0%:37,53,0,0 -Example1_ref 2864 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:63,112,0,0 0/0:.:91:91:0:0%:37,54,0,0 -Example1_ref 2865 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:67,113,0,0 0/0:.:92:92:0:0%:38,54,0,0 -Example1_ref 2866 . T TCTGTC . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=3.3086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:67,113,0,0 0/0:.:89:88:1:1.12%:36,52,1,0 -Example1_ref 2867 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:64,112,0,0 0/0:.:89:89:0:0%:36,53,0,0 -Example1_ref 2868 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:65,114,0,0 0/0:.:89:89:0:0%:36,53,0,0 -Example1_ref 2869 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:64,115,0,0 0/0:.:86:86:0:0%:34,52,0,0 -Example1_ref 2870 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:65,116,0,0 0/0:.:88:88:0:0%:36,52,0,0 -Example1_ref 2871 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:65,116,0,0 0/0:.:87:87:0:0%:35,52,0,0 -Example1_ref 2872 . T C . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=3.2959E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:66,113,0,0 0/0:.:88:87:1:1.14%:36,51,0,1 -Example1_ref 2873 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:59,113,0,0 0/0:.:85:85:0:0%:35,50,0,0 -Example1_ref 2874 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:62,116,0,0 0/0:.:84:84:0:0%:35,49,0,0 -Example1_ref 2875 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:63,116,0,0 0/0:.:86:86:0:0%:33,53,0,0 -Example1_ref 2876 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:62,117,0,0 0/0:.:86:86:0:0%:33,53,0,0 -Example1_ref 2877 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:59,114,0,0 0/0:.:85:85:0:0%:34,51,0,0 -Example1_ref 2878 . C . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:58,114,0,0 0/0:.:81:81:0:0%:32,49,0,0 -Example1_ref 2879 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:60,116,0,0 0/0:.:83:83:0:0%:34,49,0,0 -Example1_ref 2880 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:61,117,0,0 0/0:.:80:80:0:0%:31,49,0,0 -Example1_ref 2881 . G . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:62,116,0,0 0/0:.:79:79:0:0%:30,49,0,0 -Example1_ref 2882 . A ACCTGT . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=3.1298E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:64,116,0,0 0/0:.:82:81:1:1.22%:31,50,1,0 -Example1_ref 2883 . C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:65,114,0,0 0/0:.:82:82:0:0%:32,50,0,0 -Example1_ref 2884 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:63,113,0,0 0/0:.:79:79:0:0%:31,48,0,0 -Example1_ref 2885 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:62,112,0,0 0/0:.:82:82:0:0%:32,50,0,0 -Example1_ref 2886 . G . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:56,110,0,0 0/0:.:77:77:0:0%:27,50,0,0 -Example1_ref 2887 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:56,110,0,0 0/0:.:76:76:0:0%:27,49,0,0 -Example1_ref 2888 . G T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=3.102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:56,113,0,0 0/0:.:76:75:1:1.32%:25,50,1,0 -Example1_ref 2889 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:55,112,0,0 0/0:.:74:74:0:0%:24,50,0,0 -Example1_ref 2890 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:56,111,0,0 0/0:.:74:74:0:0%:25,49,0,0 -Example1_ref 2891 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:57,113,0,0 0/0:.:75:75:0:0%:25,50,0,0 -Example1_ref 2892 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:57,110,0,0 0/0:.:74:74:0:0%:24,50,0,0 -Example1_ref 2893 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:54,110,0,0 0/0:.:75:75:0:0%:25,50,0,0 -Example1_ref 2894 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:57,109,0,0 0/0:.:75:75:0:0%:25,50,0,0 -Example1_ref 2895 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:57,109,0,0 0/0:.:74:74:0:0%:24,50,0,0 -Example1_ref 2896 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:55,110,0,0 0/0:.:73:73:0:0%:23,50,0,0 -Example1_ref 2897 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:57,110,0,0 0/0:.:74:74:0:0%:24,50,0,0 -Example1_ref 2898 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:58,104,0,0 0/0:.:67:67:0:0%:24,43,0,0 -Example1_ref 2899 . G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:56,103,0,0 0/0:.:70:70:0:0%:25,45,0,0 -Example1_ref 2900 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:60,103,0,0 0/0:.:68:68:0:0%:24,44,0,0 -Example1_ref 2901 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:56,101,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 2902 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:53,99,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 2903 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:58,100,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 2904 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:56,102,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 2905 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:59,101,0,0 0/0:.:65:65:0:0%:23,42,0,0 -Example1_ref 2906 . A T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.1101E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:55,99,0,1 0/0:.:63:63:0:0%:21,42,0,0 -Example1_ref 2907 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:57,98,0,0 0/0:.:62:62:0:0%:22,40,0,0 -Example1_ref 2908 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:60,100,0,0 0/0:.:62:62:0:0%:21,41,0,0 -Example1_ref 2909 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:62,99,0,0 0/0:.:59:59:0:0%:20,39,0,0 -Example1_ref 2910 . A G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=2.7354E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:60,102,0,0 0/0:.:61:60:1:1.64%:20,40,1,0 -Example1_ref 2911 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:61,99,0,0 0/0:.:60:60:0:0%:21,39,0,0 -Example1_ref 2912 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:60,99,0,0 0/0:.:60:60:0:0%:21,39,0,0 -Example1_ref 2913 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:63,102,0,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 2914 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:60,102,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 2915 . A ATCTGTC . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=7.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:64,103,1,0 0/0:.:63:63:0:0%:25,38,0,0 -Example1_ref 2916 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:66,100,0,0 0/0:.:64:64:0:0%:25,39,0,0 -Example1_ref 2917 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:65,96,0,0 0/0:.:65:65:0:0%:28,37,0,0 -Example1_ref 2918 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:66,98,0,0 0/0:.:67:67:0:0%:29,38,0,0 -Example1_ref 2919 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:71,93,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 2920 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:72,98,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 2921 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:72,96,0,0 0/0:.:68:67:0:0%:29,38,0,0 -Example1_ref 2922 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:71,93,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 2923 . G T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=7.2197E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:68,92,1,0 0/0:.:62:62:0:0%:28,34,0,0 -Example1_ref 2924 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:69,89,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 2925 . C A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=7.1628E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:66,87,1,0 0/0:.:61:61:0:0%:29,32,0,0 -Example1_ref 2926 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:67,85,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 2927 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:69,85,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 2928 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:71,85,0,0 0/0:.:59:59:0:0%:28,31,0,0 -Example1_ref 2929 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:73,84,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 2930 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:71,83,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 2931 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:73,86,0,0 0/0:.:61:61:0:0%:28,33,0,0 -Example1_ref 2932 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:72,85,0,0 0/0:.:59:59:0:0%:28,31,0,0 -Example1_ref 2933 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:72,82,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 2934 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:72,85,0,0 0/0:.:61:61:0:0%:28,33,0,0 -Example1_ref 2935 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:74,85,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 2936 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:74,85,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 2937 . G . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:76,83,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 2938 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 2939 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:76,81,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 2940 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:76,82,0,0 0/0:.:57:57:0:0%:30,27,0,0 -Example1_ref 2941 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:57:57:0:0%:30,27,0,0 -Example1_ref 2942 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:76,81,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 2943 . C . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:76,81,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 2944 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:74,77,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 2945 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:0:0%:72,76,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 2946 . C A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=2.55E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:74,75,0,0 0/0:.:51:50:1:1.96%:28,22,0,1 -Example1_ref 2947 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:71,78,0,0 0/0:.:53:53:0:0%:28,25,0,0 -Example1_ref 2948 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:73,79,0,0 0/0:.:53:53:0:0%:28,25,0,0 -Example1_ref 2949 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:71,78,0,0 0/0:.:53:53:0:0%:28,25,0,0 -Example1_ref 2950 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:73,77,0,0 0/0:.:50:50:0:0%:28,22,0,0 -Example1_ref 2951 . C A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=7.4634E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:75,77,0,1 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 2952 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:72,76,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 2953 . G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:76,73,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 2954 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:76,76,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 2955 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:77,76,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 2956 . T A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.3737E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:73,72,1,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 2957 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:76,75,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 2958 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:77,77,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 2959 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:78,77,0,0 0/0:.:55:55:0:0%:33,22,0,0 -Example1_ref 2960 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:80,76,0,0 0/0:.:56:56:0:0%:34,22,0,0 -Example1_ref 2961 . C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:75,76,0,0 0/0:.:55:55:0:0%:33,22,0,0 -Example1_ref 2962 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:79,77,0,0 0/0:.:55:55:0:0%:35,20,0,0 -Example1_ref 2963 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:79,77,0,0 0/0:.:53:53:0:0%:33,20,0,0 -Example1_ref 2964 . A T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=7.3913E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:76,76,1,0 0/0:.:54:54:0:0%:34,20,0,0 -Example1_ref 2965 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:73,77,0,0 0/0:.:54:54:0:0%:34,20,0,0 -Example1_ref 2966 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:72,74,0,0 0/0:.:54:54:0:0%:34,20,0,0 -Example1_ref 2967 . G A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=7.3206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:77,75,0,1 0/0:.:56:56:0:0%:36,20,0,0 -Example1_ref 2968 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:75,72,0,0 0/0:.:54:54:0:0%:36,18,0,0 -Example1_ref 2969 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:76,68,0,0 0/0:.:56:56:0:0%:37,19,0,0 -Example1_ref 2970 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:73,71,0,0 0/0:.:55:55:0:0%:36,19,0,0 -Example1_ref 2971 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:78,70,0,0 0/0:.:57:57:0:0%:37,20,0,0 -Example1_ref 2972 . C . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:76,71,0,0 0/0:.:56:56:0:0%:37,19,0,0 -Example1_ref 2973 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:77,72,0,0 0/0:.:57:57:0:0%:37,20,0,0 -Example1_ref 2974 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:77,71,0,0 0/0:.:55:55:0:0%:35,20,0,0 -Example1_ref 2975 . T C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.2222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:71,71,1,0 0/0:.:55:55:0:0%:35,20,0,0 -Example1_ref 2976 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:71,69,0,0 0/0:.:53:53:0:0%:35,18,0,0 -Example1_ref 2977 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:69,69,0,0 0/0:.:54:54:0:0%:36,18,0,0 -Example1_ref 2978 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:69,69,0,0 0/0:.:53:53:0:0%:35,18,0,0 -Example1_ref 2979 . C A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=7.2251E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:70,67,0,1 0/0:.:53:53:0:0%:36,17,0,0 -Example1_ref 2980 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:70,69,0,0 0/0:.:54:54:0:0%:36,18,0,0 -Example1_ref 2981 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:70,68,0,0 0/0:.:55:54:0:0%:36,18,0,0 -Example1_ref 2982 . C . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:71,68,0,0 0/0:.:55:54:0:0%:36,18,0,0 -Example1_ref 2983 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:70,69,0,0 0/0:.:54:54:0:0%:35,19,0,0 -Example1_ref 2984 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:75,72,0,0 0/0:.:56:56:0:0%:36,20,0,0 -Example1_ref 2985 . C G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:75,68,0,1 0/0:.:54:54:0:0%:35,19,0,0 -Example1_ref 2986 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:73,73,0,0 0/0:.:54:54:0:0%:34,20,0,0 -Example1_ref 2987 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:74,71,0,0 0/0:.:54:54:0:0%:35,19,0,0 -Example1_ref 2988 . A AG . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=7.2906E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:75,72,0,1 0/0:.:55:55:0:0%:35,20,0,0 -Example1_ref 2989 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:62:62:0:0%:41,21,0,0 -Example1_ref 2990 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:91,71,0,0 0/0:.:59:59:0:0%:40,19,0,0 -Example1_ref 2991 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:97,70,0,0 0/0:.:62:62:0:0%:42,20,0,0 -Example1_ref 2992 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:96,69,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 2993 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:99,72,0,0 0/0:.:62:62:0:0%:42,20,0,0 -Example1_ref 2994 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:63:63:0:0%:42,21,0,0 -Example1_ref 2995 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:98,74,0,0 0/0:.:64:64:0:0%:43,21,0,0 -Example1_ref 2996 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:99,70,0,0 0/0:.:64:64:0:0%:43,21,0,0 -Example1_ref 2997 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:98,77,0,0 0/0:.:66:65:0:0%:43,22,0,0 -Example1_ref 2998 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:99,76,0,0 0/0:.:64:64:0:0%:41,23,0,0 -Example1_ref 2999 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:99,69,0,0 0/0:.:58:58:0:0%:42,16,0,0 -Example1_ref 3000 . G . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:99,68,0,0 0/0:.:60:60:0:0%:44,16,0,0 -Example1_ref 3001 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:60:60:0:0%:44,16,0,0 -Example1_ref 3002 . T G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.3661E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:99,65,0,1 0/0:.:59:59:0:0%:43,16,0,0 -Example1_ref 3003 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:60:60:0:0%:44,16,0,0 -Example1_ref 3004 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:57:57:0:0%:42,15,0,0 -Example1_ref 3005 . A AG . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.3778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:98,67,0,1 0/0:.:59:59:0:0%:44,15,0,0 -Example1_ref 3006 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:58:58:0:0%:43,15,0,0 -Example1_ref 3007 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:57:57:0:0%:42,15,0,0 -Example1_ref 3008 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:57:57:0:0%:42,15,0,0 -Example1_ref 3009 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:100,61,0,0 0/0:.:59:59:0:0%:43,16,0,0 -Example1_ref 3010 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:100,61,0,0 0/0:.:57:57:0:0%:41,16,0,0 -Example1_ref 3011 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:99,64,0,0 0/0:.:58:58:0:0%:42,16,0,0 -Example1_ref 3012 . A T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=2.6457E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:59:58:1:1.69%:42,16,1,0 -Example1_ref 3013 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:100,65,0,0 0/0:.:59:59:0:0%:42,17,0,0 -Example1_ref 3014 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:100,65,0,0 0/0:.:58:58:0:0%:43,15,0,0 -Example1_ref 3015 . G A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.3214E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:100,63,1,0 0/0:.:60:60:0:0%:43,17,0,0 -Example1_ref 3016 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:101,64,0,0 0/0:.:58:58:0:0%:42,16,0,0 -Example1_ref 3017 . T A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=2.7027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:60:59:1:1.67%:42,17,1,0 -Example1_ref 3018 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:100,65,0,0 0/0:.:59:59:0:0%:42,17,0,0 -Example1_ref 3019 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:58:58:0:0%:41,17,0,0 -Example1_ref 3020 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:99,62,0,0 0/0:.:58:58:0:0%:41,17,0,0 -Example1_ref 3021 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:56:56:0:0%:42,14,0,0 -Example1_ref 3022 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:102,63,0,0 0/0:.:59:59:0:0%:43,16,0,0 -Example1_ref 3023 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:101,60,0,0 0/0:.:56:56:0:0%:41,15,0,0 -Example1_ref 3024 . C . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:103,61,0,0 0/0:.:59:59:0:0%:43,16,0,0 -Example1_ref 3025 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:104,61,0,0 0/0:.:57:57:0:0%:41,16,0,0 -Example1_ref 3026 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:107,61,0,0 0/0:.:60:60:0:0%:43,17,0,0 -Example1_ref 3027 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:103,61,0,0 0/0:.:57:57:0:0%:40,17,0,0 -Example1_ref 3028 . G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:105,60,0,0 0/0:.:58:58:0:0%:43,15,0,0 -Example1_ref 3029 . C A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=2.5112E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:105,62,0,0 0/0:.:56:55:1:1.79%:42,13,1,0 -Example1_ref 3030 . G A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=2.5764E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:59:58:1:1.69%:42,16,1,0 -Example1_ref 3031 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:108,63,0,0 0/0:.:60:60:0:0%:43,17,0,0 -Example1_ref 3032 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:60:60:0:0%:43,17,0,0 -Example1_ref 3033 . T . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:57:57:0:0%:41,16,0,0 -Example1_ref 3034 . C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:109,62,0,0 0/0:.:60:60:0:0%:43,17,0,0 -Example1_ref 3035 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:105,65,0,0 0/0:.:60:60:0:0%:43,17,0,0 -Example1_ref 3036 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:111,65,0,0 0/0:.:59:59:0:0%:42,17,0,0 -Example1_ref 3037 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:111,66,0,0 0/0:.:60:60:0:0%:43,17,0,0 -Example1_ref 3038 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 3039 . G T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=7.4895E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:110,68,1,0 0/0:.:60:60:0:0%:42,18,0,0 -Example1_ref 3040 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:113,65,0,0 0/0:.:58:58:0:0%:42,16,0,0 -Example1_ref 3041 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:113,65,0,0 0/0:.:59:59:0:0%:44,15,0,0 -Example1_ref 3042 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:114,63,0,0 0/0:.:59:59:0:0%:44,15,0,0 -Example1_ref 3043 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:114,66,0,0 0/0:.:62:62:0:0%:44,18,0,0 -Example1_ref 3044 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:114,65,0,0 0/0:.:62:62:0:0%:44,18,0,0 -Example1_ref 3045 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:60:60:0:0%:44,16,0,0 -Example1_ref 3046 . G . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:108,66,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 3047 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:112,64,0,0 0/0:.:62:62:0:0%:44,18,0,0 -Example1_ref 3048 . T C . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=7.2926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:102,64,1,0 0/0:.:62:62:0:0%:44,18,0,0 -Example1_ref 3049 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:108,63,0,0 0/0:.:60:60:0:0%:44,16,0,0 -Example1_ref 3050 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:112,63,0,0 0/0:.:64:64:0:0%:46,18,0,0 -Example1_ref 3051 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:114,64,0,0 0/0:.:66:66:0:0%:49,17,0,0 -Example1_ref 3052 . T A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=2.6778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:116,59,0,0 0/0:.:64:63:1:1.56%:47,16,0,1 -Example1_ref 3053 . C A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=2.7459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:111,66,0,0 0/0:.:67:66:1:1.49%:48,18,0,1 -Example1_ref 3054 . A AG . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.2797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:120,69,0,1 0/0:.:72:71:0:0%:51,20,0,0 -Example1_ref 3055 . C A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=2.7376E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:123,68,0,0 0/0:.:72:71:1:1.39%:50,21,0,1 -Example1_ref 3056 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:123,71,0,0 0/0:.:74:74:0:0%:51,23,0,0 -Example1_ref 3057 . TA T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=7.2694E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:125,71,1,0 0/0:.:74:74:0:0%:51,23,0,0 -Example1_ref 3058 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:123,70,0,0 0/0:.:74:74:0:0%:52,22,0,0 -Example1_ref 3059 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:123,70,0,0 0/0:.:73:73:0:0%:50,23,0,0 -Example1_ref 3060 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:125,68,0,0 0/0:.:72:72:0:0%:50,22,0,0 -Example1_ref 3061 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:124,69,0,0 0/0:.:72:72:0:0%:49,23,0,0 -Example1_ref 3062 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:126,69,0,0 0/0:.:69:69:0:0%:48,21,0,0 -Example1_ref 3063 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:123,71,0,0 0/0:.:76:76:0:0%:52,24,0,0 -Example1_ref 3064 . T C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=7.2993E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:127,72,1,0 0/0:.:74:74:0:0%:50,24,0,0 -Example1_ref 3065 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:126,73,0,0 0/0:.:75:75:0:0%:53,22,0,0 -Example1_ref 3066 . G T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=7.2364E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:124,74,1,0 0/0:.:76:76:0:0%:52,24,0,0 -Example1_ref 3067 . A T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=2.7737E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:124,74,0,0 0/0:.:76:75:1:1.32%:51,24,1,0 -Example1_ref 3068 . T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:125,73,0,0 0/0:.:77:77:0:0%:53,24,0,0 -Example1_ref 3069 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:0:0%:127,73,0,0 0/0:.:78:78:0:0%:53,25,0,0 -Example1_ref 3070 . G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:123,72,0,0 0/0:.:74:74:0:0%:50,24,0,0 -Example1_ref 3071 . A T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=7.2325E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:121,74,0,1 0/0:.:75:75:0:0%:51,24,0,0 -Example1_ref 3072 . A T . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=7.1685E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:123,76,1,0 0/0:.:79:79:0:0%:54,25,0,0 -Example1_ref 3073 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:124,76,0,0 0/0:.:79:79:0:0%:54,25,0,0 -Example1_ref 3074 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:122,76,0,0 0/0:.:78:78:0:0%:53,25,0,0 -Example1_ref 3075 . T C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=7.2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:197:1:0.51%:126,71,1,0 0/0:.:78:77:0:0%:54,23,0,0 -Example1_ref 3076 . C A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=2.6882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:124,80,0,0 0/0:.:75:74:1:1.33%:51,23,1,0 -Example1_ref 3077 . A C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.2143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:120,81,1,0 0/0:.:78:78:0:0%:53,25,0,0 -Example1_ref 3078 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:124,81,0,0 0/0:.:79:79:0:0%:53,26,0,0 -Example1_ref 3079 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:122,81,0,0 0/0:.:80:80:0:0%:54,26,0,0 -Example1_ref 3080 . G . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:117,81,0,0 0/0:.:77:77:0:0%:51,26,0,0 -Example1_ref 3081 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:122,81,0,0 0/0:.:79:79:0:0%:53,26,0,0 -Example1_ref 3082 . G T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=7.2474E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:128,79,1,0 0/0:.:79:79:0:0%:53,26,0,0 -Example1_ref 3083 . A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:128,83,0,0 0/0:.:78:78:0:0%:52,26,0,0 -Example1_ref 3084 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:130,85,0,0 0/0:.:80:80:0:0%:54,26,0,0 -Example1_ref 3085 . C A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.3239E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:127,80,0,1 0/0:.:76:76:0:0%:52,24,0,0 -Example1_ref 3086 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:129,84,0,0 0/0:.:82:82:0:0%:55,27,0,0 -Example1_ref 3087 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:128,84,0,0 0/0:.:81:81:0:0%:54,27,0,0 -Example1_ref 3088 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:128,82,0,0 0/0:.:79:79:0:0%:53,26,0,0 -Example1_ref 3089 . T G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=2.8169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:123,81,0,0 0/0:.:80:79:1:1.25%:51,28,1,0 -Example1_ref 3090 . G A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=5.287E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:209:2:0.95%:123,86,2,0 0/0:.:80:79:0:0%:50,29,0,0 -Example1_ref 3091 . T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:132,78,0,0 0/0:.:85:85:0:0%:55,30,0,0 -Example1_ref 3092 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:126,83,0,0 0/0:.:80:80:0:0%:51,29,0,0 -Example1_ref 3093 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:132,90,0,0 0/0:.:86:86:0:0%:54,32,0,0 -Example1_ref 3094 . T G . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=7.2425E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:129,88,0,1 0/0:.:83:83:0:0%:53,30,0,0 -Example1_ref 3095 . T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:128,92,0,0 0/0:.:83:83:0:0%:50,33,0,0 -Example1_ref 3096 . G . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:126,91,0,0 0/0:.:80:80:0:0%:48,32,0,0 -Example1_ref 3097 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:134,91,0,0 0/0:.:84:84:0:0%:51,33,0,0 -Example1_ref 3098 . T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:128,90,0,0 0/0:.:85:85:0:0%:53,32,0,0 -Example1_ref 3099 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:129,88,0,0 0/0:.:79:79:0:0%:49,30,0,0 -Example1_ref 3100 . A C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=2.7597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:132,91,0,0 0/0:.:85:84:1:1.18%:53,31,0,1 -Example1_ref 3101 . C . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:133,83,0,0 0/0:.:81:81:0:0%:51,30,0,0 -Example1_ref 3102 . G . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:134,88,0,0 0/0:.:83:83:0:0%:50,33,0,0 -Example1_ref 3103 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:133,85,0,0 0/0:.:83:83:0:0%:51,32,0,0 -Example1_ref 3104 . C . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:129,82,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 3105 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:131,90,0,0 0/0:.:85:85:0:0%:51,34,0,0 -Example1_ref 3106 . T C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=7.2093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:129,87,1,0 0/0:.:84:84:0:0%:51,33,0,0 -Example1_ref 3107 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:128,88,0,0 0/0:.:84:84:0:0%:49,35,0,0 -Example1_ref 3108 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:0:0%:128,90,0,0 0/0:.:83:83:0:0%:48,35,0,0 -Example1_ref 3109 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:120,91,0,0 0/0:.:82:82:0:0%:45,37,0,0 -Example1_ref 3110 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:123,87,0,0 0/0:.:79:79:0:0%:46,33,0,0 -Example1_ref 3111 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:124,86,0,0 0/0:.:80:80:0:0%:46,34,0,0 -Example1_ref 3112 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:123,85,0,0 0/0:.:77:77:0:0%:46,31,0,0 -Example1_ref 3113 . C . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:122,88,0,0 0/0:.:81:81:0:0%:48,33,0,0 -Example1_ref 3114 . A T . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=7.1987E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:123,97,1,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 3115 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:123,98,0,0 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 3116 . A G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.2848E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:123,96,0,1 0/0:.:82:82:0:0%:44,38,0,0 -Example1_ref 3117 . T A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=2.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:124,84,0,0 0/0:.:80:79:1:1.25%:45,34,0,1 -Example1_ref 3118 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:119,87,0,0 0/0:.:81:81:0:0%:45,36,0,0 -Example1_ref 3119 . T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:117,90,0,0 0/0:.:84:84:0:0%:47,37,0,0 -Example1_ref 3120 . C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:118,99,0,0 0/0:.:85:85:0:0%:46,39,0,0 -Example1_ref 3121 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:120,98,0,0 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 3122 . A . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:118,100,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 3123 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:0:0%:123,96,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 3124 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:0:0%:123,96,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 3125 . T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:118,89,0,0 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 3126 . C . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:120,95,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 3127 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:119,97,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 3128 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:120,93,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 3129 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:116,99,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 3130 . A T . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=2.9126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:119,100,0,0 0/0:.:90:89:1:1.11%:45,44,1,0 -Example1_ref 3131 . C A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.1192E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:214:1:0.47%:123,91,0,1 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 3132 . T . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:119,99,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 3133 . G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:121,97,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 3134 . A G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.0779E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:119,98,0,1 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 3135 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:120,101,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 3136 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:120,101,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 3137 . G T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.1242E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:120,97,0,1 0/0:.:88:88:0:0%:45,43,0,0 -Example1_ref 3138 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:123,99,0,0 0/0:.:92:92:0:0%:48,44,0,0 -Example1_ref 3139 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:123,98,0,0 0/0:.:91:91:0:0%:46,45,0,0 -Example1_ref 3140 . G A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.013E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:117,98,1,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 3141 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:121,101,0,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 3142 . G T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.0513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:120,99,1,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 3143 . G C . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=7.0096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:118,99,1,0 0/0:.:93:93:0:0%:46,47,0,0 -Example1_ref 3144 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:116,102,0,0 0/0:.:95:95:0:0%:46,49,0,0 -Example1_ref 3145 . A AC . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.0064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:116,103,1,0 0/0:.:94:94:0:0%:46,48,0,0 -Example1_ref 3146 . A G . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=3.0915E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:114,105,0,0 0/0:.:98:97:1:1.02%:45,52,1,0 -Example1_ref 3147 . G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:95:95:0:0%:46,49,0,0 -Example1_ref 3148 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:117,105,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 3149 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:111,107,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 3150 . A . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:114,108,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 3151 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 3152 . A T . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=7.0347E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:115,107,0,1 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 3153 . C A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=4.9868E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:210:2:0.94%:114,96,0,2 0/0:.:88:88:0:0%:41,47,0,0 -Example1_ref 3154 . C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:108,108,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 3155 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:114,110,0,0 0/0:.:96:95:0:0%:41,54,0,0 -Example1_ref 3156 . A T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=6.9687E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:113,109,1,0 0/0:.:98:97:0:0%:42,55,0,0 -Example1_ref 3157 . A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:116,111,0,0 0/0:.:98:98:0:0%:42,56,0,0 -Example1_ref 3158 . A . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:115,112,0,0 0/0:.:100:100:0:0%:43,57,0,0 -Example1_ref 3159 . T A . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=3.0159E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:115,105,0,0 0/0:.:95:94:1:1.05%:42,52,0,1 -Example1_ref 3160 . G . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:111,112,0,0 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 3161 . A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:114,113,0,0 0/0:.:98:98:0:0%:43,55,0,0 -Example1_ref 3162 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:112,114,0,0 0/0:.:98:98:0:0%:42,56,0,0 -Example1_ref 3163 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:88:88:0:0%:41,47,0,0 -Example1_ref 3164 . C A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=6.9811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:113,108,0,1 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 3165 . C A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=5.1519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:215:1:0.46%:110,105,0,1 0/0:.:94:93:1:1.06%:43,50,0,1 -Example1_ref 3166 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:119,108,0,0 0/0:.:99:99:0:0%:44,55,0,0 -Example1_ref 3167 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:104:104:0:0%:46,58,0,0 -Example1_ref 3168 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:118,120,0,0 0/0:.:102:102:0:0%:47,55,0,0 -Example1_ref 3169 . G . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:120,120,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 3170 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:0:0%:118,119,0,0 0/0:.:103:103:0:0%:46,57,0,0 -Example1_ref 3171 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:118,119,0,0 0/0:.:106:106:0:0%:48,58,0,0 -Example1_ref 3172 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:114,118,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 3173 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:118,115,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 3174 . A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:118,114,0,0 0/0:.:103:103:0:0%:46,57,0,0 -Example1_ref 3175 . G C . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=3.0838E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:104:102:1:0.97%:46,56,0,1 -Example1_ref 3176 . T . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:114,111,0,0 0/0:.:104:104:0:0%:47,57,0,0 -Example1_ref 3177 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:108:108:0:0%:50,58,0,0 -Example1_ref 3178 . T . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:116,109,0,0 0/0:.:102:101:0:0%:47,54,0,0 -Example1_ref 3179 . C A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=3.0793E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:117,110,0,0 0/0:.:101:100:1:0.99%:47,53,0,1 -Example1_ref 3180 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:101:101:0:0%:46,55,0,0 -Example1_ref 3181 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:111,112,0,0 0/0:.:105:105:0:0%:46,59,0,0 -Example1_ref 3182 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:109,111,0,0 0/0:.:100:100:0:0%:46,54,0,0 -Example1_ref 3183 . G A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=3.1269E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:108,114,0,0 0/0:.:101:100:1:0.99%:46,54,0,1 -Example1_ref 3184 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:101:101:0:0%:46,55,0,0 -Example1_ref 3185 . T . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:103,108,0,0 0/0:.:100:100:0:0%:44,56,0,0 -Example1_ref 3186 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:103,105,0,0 0/0:.:100:100:0:0%:47,53,0,0 -Example1_ref 3187 . A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:105,109,0,0 0/0:.:103:103:0:0%:48,55,0,0 -Example1_ref 3188 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:108,106,0,0 0/0:.:102:102:0:0%:47,55,0,0 -Example1_ref 3189 . G . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:108,105,0,0 0/0:.:102:102:0:0%:47,55,0,0 -Example1_ref 3190 . A G . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=3.2915E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:107,107,0,0 0/0:.:105:104:1:0.95%:48,56,0,1 -Example1_ref 3191 . C . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:107,105,0,0 0/0:.:101:101:0:0%:47,54,0,0 -Example1_ref 3192 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:109,108,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 3193 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:105,107,0,0 0/0:.:100:100:0:0%:45,55,0,0 -Example1_ref 3194 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:106,108,0,0 0/0:.:100:100:0:0%:46,54,0,0 -Example1_ref 3195 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:106,106,0,0 0/0:.:101:101:0:0%:45,56,0,0 -Example1_ref 3196 . T . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:106,107,0,0 0/0:.:98:98:0:0%:45,53,0,0 -Example1_ref 3197 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:106,106,0,0 0/0:.:100:100:0:0%:46,54,0,0 -Example1_ref 3198 . G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:103,107,0,0 0/0:.:103:103:0:0%:46,57,0,0 -Example1_ref 3199 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:105,106,0,0 0/0:.:103:103:0:0%:46,57,0,0 -Example1_ref 3200 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:103,108,0,0 0/0:.:101:101:0:0%:43,58,0,0 -Example1_ref 3201 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:103:103:0:0%:45,58,0,0 -Example1_ref 3202 . G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:101:101:0:0%:46,55,0,0 -Example1_ref 3203 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:0:0%:102,105,0,0 0/0:.:100:100:0:0%:45,55,0,0 -Example1_ref 3204 . G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:101,111,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 3205 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:95,114,0,0 0/0:.:105:105:0:0%:46,59,0,0 -Example1_ref 3206 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:102,125,0,0 0/0:.:102:102:0:0%:43,59,0,0 -Example1_ref 3207 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:104,122,0,0 0/0:.:108:108:0:0%:47,61,0,0 -Example1_ref 3208 . A G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=6.7742E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:230:1:0.43%:105,125,0,1 0/0:.:110:110:0:0%:48,62,0,0 -Example1_ref 3209 . A G . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=3.1858E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:108:107:1:0.93%:46,61,1,0 -Example1_ref 3210 . G . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:97,128,0,0 0/0:.:106:106:0:0%:45,61,0,0 -Example1_ref 3211 . A . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:99,127,0,0 0/0:.:105:105:0:0%:44,61,0,0 -Example1_ref 3212 . T A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=6.6981E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:96,116,0,1 0/0:.:105:105:0:0%:45,60,0,0 -Example1_ref 3213 . C . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:94,119,0,0 0/0:.:106:106:0:0%:42,64,0,0 -Example1_ref 3214 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:96,124,0,0 0/0:.:112:112:0:0%:47,65,0,0 -Example1_ref 3215 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:98,126,0,0 0/0:.:110:110:0:0%:45,65,0,0 -Example1_ref 3216 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:94,124,0,0 0/0:.:110:110:0:0%:46,64,0,0 -Example1_ref 3217 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:96,124,0,0 0/0:.:110:110:0:0%:46,64,0,0 -Example1_ref 3218 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:96,123,0,0 0/0:.:110:110:0:0%:46,64,0,0 -Example1_ref 3219 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:95,124,0,0 0/0:.:110:110:0:0%:46,64,0,0 -Example1_ref 3220 . A C . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=6.6972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:96,122,1,0 0/0:.:108:108:0:0%:45,63,0,0 -Example1_ref 3221 . C . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:91,117,0,0 0/0:.:101:101:0:0%:41,60,0,0 -Example1_ref 3222 . C A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=6.6772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:86,124,1,0 0/0:.:105:105:0:0%:43,62,0,0 -Example1_ref 3223 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:92,123,0,0 0/0:.:105:105:0:0%:45,60,0,0 -Example1_ref 3224 . G . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:92,120,0,0 0/0:.:103:103:0:0%:41,62,0,0 -Example1_ref 3225 . G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:85,124,0,0 0/0:.:104:104:0:0%:42,62,0,0 -Example1_ref 3226 . T . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:89,123,0,0 0/0:.:103:103:0:0%:42,61,0,0 -Example1_ref 3227 . T TC . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=3.3439E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:88,121,0,0 0/0:.:105:104:1:0.95%:44,60,1,0 -Example1_ref 3228 . T G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=3.2039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:89,121,0,0 0/0:.:99:98:1:1.01%:37,61,1,0 -Example1_ref 3229 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:88,124,0,0 0/0:.:106:106:0:0%:44,62,0,0 -Example1_ref 3230 . A T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=3.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:91,125,0,0 0/0:.:108:107:1:0.93%:45,62,1,0 -Example1_ref 3231 . C A . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=3.2899E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:89,117,0,0 0/0:.:101:100:1:0.99%:44,56,0,1 -Example1_ref 3232 . C A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=6.8899E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:2:0.96%:85,122,0,2 0/0:.:99:98:1:1.01%:40,58,0,1 -Example1_ref 3233 . C . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:87,123,0,0 0/0:.:99:99:0:0%:39,60,0,0 -Example1_ref 3234 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:103:103:0:0%:43,60,0,0 -Example1_ref 3235 . C A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=6.7869E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:92,114,0,1 0/0:.:98:98:0:0%:41,57,0,0 -Example1_ref 3236 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:93,120,0,0 0/0:.:99:99:0:0%:39,60,0,0 -Example1_ref 3237 . T C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=3.2372E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:88,123,0,0 0/0:.:101:100:1:0.99%:41,59,0,1 -Example1_ref 3238 . A C . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=3.2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:94,127,0,0 0/0:.:104:103:1:0.96%:44,59,0,1 -Example1_ref 3239 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:94,125,0,0 0/0:.:100:100:0:0%:41,59,0,0 -Example1_ref 3240 . G . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:94,126,0,0 0/0:.:101:101:0:0%:42,59,0,0 -Example1_ref 3241 . G T . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=6.881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:88,125,1,0 0/0:.:97:97:0:0%:38,59,0,0 -Example1_ref 3242 . A ACTGTCTCTT . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=4.786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:214:2:0.93%:88,126,2,0 0/0:.:96:96:0:0%:37,59,0,0 -Example1_ref 3243 . A G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=6.8707E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:87,114,0,1 0/0:.:92:92:0:0%:36,56,0,0 -Example1_ref 3244 . G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:79,113,0,0 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 3245 . C A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=3.169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:80,114,0,0 0/0:.:90:89:1:1.11%:35,54,0,1 -Example1_ref 3246 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:80,119,0,0 0/0:.:94:94:0:0%:35,59,0,0 -Example1_ref 3247 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:81,111,0,0 0/0:.:92:92:0:0%:37,55,0,0 -Example1_ref 3248 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:81,119,0,0 0/0:.:96:96:0:0%:38,58,0,0 -Example1_ref 3249 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:80,119,0,0 0/0:.:95:95:0:0%:36,59,0,0 -Example1_ref 3250 . G A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=6.7708E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:77,117,0,1 0/0:.:93:93:0:0%:35,58,0,0 -Example1_ref 3251 . G . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:74,115,0,0 0/0:.:92:92:0:0%:35,57,0,0 -Example1_ref 3252 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:74,111,0,0 0/0:.:92:92:0:0%:37,55,0,0 -Example1_ref 3253 . A T . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=6.6548E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:75,111,1,0 0/0:.:94:94:0:0%:38,56,0,0 -Example1_ref 3254 . T . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:76,103,0,0 0/0:.:90:90:0:0%:37,53,0,0 -Example1_ref 3255 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:76,108,0,0 0/0:.:93:93:0:0%:37,56,0,0 -Example1_ref 3256 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:97:97:0:0%:40,57,0,0 -Example1_ref 3257 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:78,111,0,0 0/0:.:97:97:0:0%:39,58,0,0 -Example1_ref 3258 . C . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:78,110,0,0 0/0:.:94:94:0:0%:39,55,0,0 -Example1_ref 3259 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:78,110,0,0 0/0:.:98:98:0:0%:40,58,0,0 -Example1_ref 3260 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:78,109,0,0 0/0:.:97:97:0:0%:40,57,0,0 -Example1_ref 3261 . G . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:80,108,0,0 0/0:.:91:91:0:0%:36,55,0,0 -Example1_ref 3262 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:79,109,0,0 0/0:.:95:95:0:0%:39,56,0,0 -Example1_ref 3263 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:0:0%:79,109,0,0 0/0:.:93:93:0:0%:37,56,0,0 -Example1_ref 3264 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:78,104,0,0 0/0:.:96:96:0:0%:40,56,0,0 -Example1_ref 3265 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:78,104,0,0 0/0:.:94:94:0:0%:40,54,0,0 -Example1_ref 3266 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:79,102,0,0 0/0:.:93:93:0:0%:43,50,0,0 -Example1_ref 3267 . A AC . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.1752E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:186:2:1.06%:77,109,2,0 0/0:.:98:97:1:1.02%:42,55,1,0 -Example1_ref 3268 . C A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=6.5217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:77,102,0,1 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 3269 . C A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=3.4296E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:75,107,0,0 0/0:.:95:94:1:1.05%:38,56,1,0 -Example1_ref 3270 . T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:77,102,0,0 0/0:.:96:96:0:0%:41,55,0,0 -Example1_ref 3271 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:78,106,0,0 0/0:.:98:98:0:0%:40,58,0,0 -Example1_ref 3272 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:101:101:0:0%:40,61,0,0 -Example1_ref 3273 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:101:101:0:0%:42,59,0,0 -Example1_ref 3274 . C A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=6.4561E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:79,104,0,1 0/0:.:101:101:0:0%:42,59,0,0 -Example1_ref 3275 . T G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=6.3475E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:78,100,0,1 0/0:.:103:103:0:0%:43,60,0,0 -Example1_ref 3276 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:80,105,0,0 0/0:.:103:103:0:0%:44,59,0,0 -Example1_ref 3277 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:78,99,0,0 0/0:.:103:103:0:0%:44,59,0,0 -Example1_ref 3278 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:77,105,0,0 0/0:.:101:101:0:0%:44,57,0,0 -Example1_ref 3279 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:0:0%:76,99,0,0 0/0:.:101:101:0:0%:43,58,0,0 -Example1_ref 3280 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:77,96,0,0 0/0:.:99:99:0:0%:43,56,0,0 -Example1_ref 3281 . G . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:72,97,0,0 0/0:.:98:98:0:0%:40,58,0,0 -Example1_ref 3282 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:75,96,0,0 0/0:.:100:100:0:0%:41,59,0,0 -Example1_ref 3283 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:75,93,0,0 0/0:.:98:98:0:0%:43,55,0,0 -Example1_ref 3284 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:75,94,0,0 0/0:.:95:95:0:0%:39,56,0,0 -Example1_ref 3285 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:76,92,0,0 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 3286 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:73,94,0,0 0/0:.:98:98:0:0%:42,56,0,0 -Example1_ref 3287 . C . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:99:99:0:0%:43,56,0,0 -Example1_ref 3288 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:74,96,0,0 0/0:.:97:97:0:0%:41,56,0,0 -Example1_ref 3289 . G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:79,93,0,0 0/0:.:97:97:0:0%:43,54,0,0 -Example1_ref 3290 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:74,97,0,0 0/0:.:95:95:0:0%:41,54,0,0 -Example1_ref 3291 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:75,99,0,0 0/0:.:102:102:0:0%:44,58,0,0 -Example1_ref 3292 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:75,98,0,0 0/0:.:103:103:0:0%:45,58,0,0 -Example1_ref 3293 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:80,101,0,0 0/0:.:106:106:0:0%:48,58,0,0 -Example1_ref 3294 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:78,99,0,0 0/0:.:105:105:0:0%:47,58,0,0 -Example1_ref 3295 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:80,101,0,0 0/0:.:107:107:0:0%:49,58,0,0 -Example1_ref 3296 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:105:105:0:0%:48,57,0,0 -Example1_ref 3297 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:81,99,0,0 0/0:.:106:106:0:0%:49,57,0,0 -Example1_ref 3298 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 3299 . T C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=3.5842E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:100:99:1:1%:47,52,1,0 -Example1_ref 3300 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:80,99,0,0 0/0:.:107:106:0:0%:51,55,0,0 -Example1_ref 3301 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:83,97,0,0 0/0:.:103:102:0:0%:47,55,0,0 -Example1_ref 3302 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:83,94,0,0 0/0:.:106:106:0:0%:51,55,0,0 -Example1_ref 3303 . G T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.5744E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:173:2:1.14%:79,94,2,0 0/0:.:105:104:1:0.95%:49,55,1,0 -Example1_ref 3304 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:81,92,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 3305 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:83,93,0,0 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 3306 . T . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 3307 . G . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 3308 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:85,92,0,0 0/0:.:101:101:0:0%:52,49,0,0 -Example1_ref 3309 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:86,87,0,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 3310 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:83,88,0,0 0/0:.:106:106:0:0%:52,54,0,0 -Example1_ref 3311 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:84,92,0,0 0/0:.:106:106:0:0%:53,53,0,0 -Example1_ref 3312 . A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:87,93,0,0 0/0:.:109:109:0:0%:54,55,0,0 -Example1_ref 3313 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:84,92,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 3314 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:83,93,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 3315 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:84,94,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 3316 . G . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 3317 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:85,90,0,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 3318 . C A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=3.7546E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:83,85,0,0 0/0:.:101:100:1:0.99%:52,48,0,1 -Example1_ref 3319 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:83,92,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 3320 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:86,93,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 3321 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:106:106:0:0%:54,52,0,0 -Example1_ref 3322 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 3323 . C . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:84,93,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 3324 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:84,95,0,0 0/0:.:106:106:0:0%:52,54,0,0 -Example1_ref 3325 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:85,94,0,0 0/0:.:103:103:0:0%:51,52,0,0 -Example1_ref 3326 . A T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=6.0123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:82,94,1,0 0/0:.:103:102:1:0.97%:49,53,1,0 -Example1_ref 3327 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:82,96,0,0 0/0:.:105:105:0:0%:51,54,0,0 -Example1_ref 3328 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:86,99,0,0 0/0:.:107:107:0:0%:53,54,0,0 -Example1_ref 3329 . T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:103:103:0:0%:52,51,0,0 -Example1_ref 3330 . A ACTTC . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=6.3889E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:87,96,1,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 3331 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:105:105:0:0%:54,51,0,0 -Example1_ref 3332 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:84,98,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 3333 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:87,98,0,0 0/0:.:106:106:0:0%:53,53,0,0 -Example1_ref 3334 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 3335 . G . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:87,98,0,0 0/0:.:103:103:0:0%:51,52,0,0 -Example1_ref 3336 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:92,96,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 3337 . T A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=6.5493E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:185:1:0.54%:92,93,0,1 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 3338 . C . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:181:0:0%:89,92,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 3339 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:90,91,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 3340 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:93,89,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 3341 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:93,91,0,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 3342 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:95,90,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 3343 . AAT A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=3.5294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:96,91,0,0 0/0:.:104:101:1:0.98%:53,48,0,1 -Example1_ref 3344 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:96,91,0,0 0/0:.:103:102:0:0%:54,48,0,0 -Example1_ref 3345 . TGAG T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=6.6304E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:182:1:0.55%:94,88,1,0 0/0:.:94:93:0:0%:51,42,0,0 -Example1_ref 3346 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:91,89,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 3347 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:94,90,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 3348 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:93,91,0,0 0/0:.:88:88:0:0%:45,43,0,0 -Example1_ref 3349 . T A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=6.7033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:94,88,0,1 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 3350 . C A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=3.3457E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:91,88,0,0 0/0:.:90:89:1:1.11%:48,41,0,1 -Example1_ref 3351 . AAAT A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=6.6547E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:95,89,0,1 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 3352 . A C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=6.6426E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:183:1:0.54%:94,89,1,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 3353 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:0:0%:93,88,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 3354 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:0:0%:93,91,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 3355 . G A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=6.6914E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:88,91,1,0 0/0:.:89:89:0:0%:46,43,0,0 -Example1_ref 3356 . CA C . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=6.7681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:91,86,0,1 0/0:.:85:85:0:0%:45,40,0,0 -Example1_ref 3357 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:90,87,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 3358 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:89,86,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 3359 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:88,85,0,0 0/0:.:85:85:0:0%:43,42,0,0 -Example1_ref 3360 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:87,90,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 3361 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:86,92,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 3362 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:89,91,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 3363 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:89,91,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 3364 . C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:90,88,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 3365 . T A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=3.1923E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:89,88,0,0 0/0:.:83:82:1:1.2%:43,39,0,1 -Example1_ref 3366 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:88,88,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 3367 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:86,88,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 3368 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:80,87,0,0 0/0:.:82:82:0:0%:42,40,0,0 -Example1_ref 3369 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:81,89,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 3370 . C A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=6.7871E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:81,87,0,1 0/0:.:80:80:0:0%:42,38,0,0 -Example1_ref 3371 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:81,91,0,0 0/0:.:78:78:0:0%:40,38,0,0 -Example1_ref 3372 . C CA . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=6.9124E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:170:2:1.16%:82,88,0,2 0/0:.:82:81:1:1.22%:41,40,0,1 -Example1_ref 3373 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:79,86,0,0 0/0:.:80:80:0:0%:40,40,0,0 -Example1_ref 3374 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:78,88,0,0 0/0:.:82:82:0:0%:41,41,0,0 -Example1_ref 3375 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:78,87,0,0 0/0:.:82:82:0:0%:41,41,0,0 -Example1_ref 3376 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:80,88,0,0 0/0:.:80:80:0:0%:41,39,0,0 -Example1_ref 3377 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:78,89,0,0 0/0:.:82:82:0:0%:41,41,0,0 -Example1_ref 3378 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:75,90,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 3379 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:74,93,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 3380 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:77,92,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 3381 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:76,94,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 3382 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:71,94,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 3383 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:73,92,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 3384 . C A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=3.28E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:75,93,0,0 0/0:.:82:81:1:1.22%:41,40,0,1 -Example1_ref 3385 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:78,93,0,0 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 3386 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:79,92,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 3387 . T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:80,95,0,0 0/0:.:84:84:0:0%:43,41,0,0 -Example1_ref 3388 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:80,95,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 3389 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:81,89,0,0 0/0:.:82:82:0:0%:43,39,0,0 -Example1_ref 3390 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:87:87:0:0%:45,42,0,0 -Example1_ref 3391 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:82,94,0,0 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 3392 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:82,91,0,0 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 3393 . G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:82,92,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 3394 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:80,90,0,0 0/0:.:81:81:0:0%:41,40,0,0 -Example1_ref 3395 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:81,76,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 3396 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:85,80,0,0 0/0:.:78:78:0:0%:39,39,0,0 -Example1_ref 3397 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 3398 . C . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:79:79:0:0%:42,37,0,0 -Example1_ref 3399 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:82,75,0,0 0/0:.:77:77:0:0%:41,36,0,0 -Example1_ref 3400 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:87,74,0,0 0/0:.:77:77:0:0%:42,35,0,0 -Example1_ref 3401 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:88,75,0,0 0/0:.:80:80:0:0%:44,36,0,0 -Example1_ref 3402 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:78:78:0:0%:43,35,0,0 -Example1_ref 3403 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 3404 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:88,71,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 3405 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:86,74,0,0 0/0:.:79:79:0:0%:44,35,0,0 -Example1_ref 3406 . G A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=3.2353E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:77:76:1:1.3%:40,36,1,0 -Example1_ref 3407 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:84,75,0,0 0/0:.:79:79:0:0%:43,36,0,0 -Example1_ref 3408 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:84,78,0,0 0/0:.:79:79:0:0%:43,36,0,0 -Example1_ref 3409 . G T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=6.7797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:84,75,1,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 3410 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 3411 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:88,78,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 3412 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:89,79,0,0 0/0:.:80:80:0:0%:43,37,0,0 -Example1_ref 3413 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:80:80:0:0%:43,37,0,0 -Example1_ref 3414 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:78:78:0:0%:42,36,0,0 -Example1_ref 3415 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:88,79,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 3416 . A T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=3.252E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:88,78,0,0 0/0:.:80:79:1:1.25%:41,38,1,0 -Example1_ref 3417 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:80:80:0:0%:42,38,0,0 -Example1_ref 3418 . A G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=6.747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:87,80,1,0 0/0:.:81:81:0:0%:43,38,0,0 -Example1_ref 3419 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:91,81,0,0 0/0:.:81:81:0:0%:43,38,0,0 -Example1_ref 3420 . C A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=6.8235E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:92,81,0,1 0/0:.:81:81:0:0%:43,38,0,0 -Example1_ref 3421 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:93,82,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 3422 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:80:80:0:0%:43,37,0,0 -Example1_ref 3423 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:82:82:0:0%:45,37,0,0 -Example1_ref 3424 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:86,78,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 3425 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:80:80:0:0%:43,37,0,0 -Example1_ref 3426 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:89,80,0,0 0/0:.:80:80:0:0%:45,35,0,0 -Example1_ref 3427 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 3428 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:87,82,0,0 0/0:.:79:78:0:0%:42,36,0,0 -Example1_ref 3429 . C . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:77:77:0:0%:41,36,0,0 -Example1_ref 3430 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:89,81,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 3431 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:90,83,0,0 0/0:.:77:77:0:0%:42,35,0,0 -Example1_ref 3432 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:91,85,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 3433 . C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:90,82,0,0 0/0:.:85:85:0:0%:46,39,0,0 -Example1_ref 3434 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 3435 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:0:0%:86,87,0,0 0/0:.:84:84:0:0%:44,40,0,0 -Example1_ref 3436 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:85,84,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 3437 . G A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=6.8273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:87,82,0,1 0/0:.:79:79:0:0%:42,37,0,0 -Example1_ref 3438 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:87,83,0,0 0/0:.:80:80:0:0%:43,37,0,0 -Example1_ref 3439 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 3440 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:87,80,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 3441 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:82:82:0:0%:42,40,0,0 -Example1_ref 3442 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 3443 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:85:84:0:0%:43,41,0,0 -Example1_ref 3444 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:92,84,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 3445 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:92,83,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 3446 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:0:0%:91,80,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 3447 . A G . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=9.5764E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:170:6:3.41%:89,81,4,2 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 3448 . T A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=6.7331E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:90,78,0,1 0/0:.:82:82:0:0%:41,41,0,0 -Example1_ref 3449 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:92,84,0,0 0/0:.:82:82:0:0%:41,41,0,0 -Example1_ref 3450 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:79:79:0:0%:40,39,0,0 -Example1_ref 3451 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:79:79:0:0%:38,41,0,0 -Example1_ref 3452 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:100,85,0,0 0/0:.:84:84:0:0%:43,41,0,0 -Example1_ref 3453 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:99,84,0,0 0/0:.:84:84:0:0%:43,41,0,0 -Example1_ref 3454 . A ATCTG . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=3.1321E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:98,84,0,0 0/0:.:83:82:1:1.2%:41,41,1,0 -Example1_ref 3455 . T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:97,84,0,0 0/0:.:78:78:0:0%:38,40,0,0 -Example1_ref 3456 . A C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=3.0315E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:97,80,0,0 0/0:.:77:76:1:1.3%:38,38,1,0 -Example1_ref 3457 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:99,79,0,0 0/0:.:77:77:0:0%:38,39,0,0 -Example1_ref 3458 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:98,81,0,0 0/0:.:79:79:0:0%:39,40,0,0 -Example1_ref 3459 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:99,82,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 3460 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:89,79,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 3461 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:97,80,0,0 0/0:.:77:77:0:0%:39,38,0,0 -Example1_ref 3462 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:92,82,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 3463 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:94,80,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 3464 . T C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.0732E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:95,78,0,1 0/0:.:72:72:0:0%:38,34,0,0 -Example1_ref 3465 . C A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=7.12E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:93,84,1,0 0/0:.:73:72:0:0%:36,36,0,0 -Example1_ref 3466 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:93,87,0,0 0/0:.:77:77:0:0%:40,37,0,0 -Example1_ref 3467 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:95,86,0,0 0/0:.:78:78:0:0%:39,39,0,0 -Example1_ref 3468 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:92,88,0,0 0/0:.:77:77:0:0%:38,39,0,0 -Example1_ref 3469 . C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:95,88,0,0 0/0:.:78:78:0:0%:40,38,0,0 -Example1_ref 3470 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:94,87,0,0 0/0:.:76:76:0:0%:39,37,0,0 -Example1_ref 3471 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:96,83,0,0 0/0:.:73:73:0:0%:39,34,0,0 -Example1_ref 3472 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:94,88,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 3473 . G A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=2.9644E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:94,84,0,0 0/0:.:75:74:1:1.33%:38,36,1,0 -Example1_ref 3474 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:91,86,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 3475 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:97,87,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 3476 . AAAG A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=6.9767E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:179:1:0.56%:91,88,1,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 3477 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:0:0%:90,87,0,0 0/0:.:75:75:0:0%:39,36,0,0 -Example1_ref 3478 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:0:0%:94,85,0,0 0/0:.:76:76:0:0%:41,35,0,0 -Example1_ref 3479 . G GC . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=5.0055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:173:1:0.57%:85,88,0,1 0/0:.:73:71:1:1.39%:35,36,1,0 -Example1_ref 3480 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:88,84,0,0 0/0:.:72:72:0:0%:38,34,0,0 -Example1_ref 3481 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:85,87,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 3482 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:87,87,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 3483 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:87,88,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 3484 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:81,87,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 3485 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:85,87,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 3486 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:85,91,0,0 0/0:.:70:69:0:0%:33,36,0,0 -Example1_ref 3487 . G . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:80,90,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 3488 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:85,90,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 3489 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:83,89,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 3490 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:84,89,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 3491 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:88,89,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 3492 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:87,89,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 3493 . T A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=7.2532E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:81,87,1,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 3494 . C A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=2.8936E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:84,83,0,0 0/0:.:68:67:1:1.47%:32,35,1,0 -Example1_ref 3495 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:84,87,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 3496 . G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:85,84,0,0 0/0:.:64:64:0:0%:33,31,0,0 -Example1_ref 3497 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:84,85,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 3498 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:86,84,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 3499 . T TCTGTCTC . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=2.7074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:62:61:1:1.61%:31,30,1,0 -Example1_ref 3500 . T A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=2.5541E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:84,88,0,0 0/0:.:59:58:1:1.69%:28,30,1,0 -Example1_ref 3501 . G . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:83,86,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 3502 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:0:0%:82,87,0,0 0/0:.:62:61:0:0%:30,31,0,0 -Example1_ref 3503 . TGGA T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:79,85,1,0 0/0:.:60:60:0:0%:29,31,0,0 -Example1_ref 3504 . G T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.3874E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:78,85,1,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 3505 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:78,87,0,0 0/0:.:56:56:0:0%:28,28,0,0 -Example1_ref 3506 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:79,85,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 3507 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:81,84,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 3508 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:81,87,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 3509 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:81,83,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 3510 . G A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=2.807E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:78,86,0,0 0/0:.:64:63:1:1.56%:36,27,0,1 -Example1_ref 3511 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:82,85,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 3512 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:83,82,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 3513 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:83,81,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 3514 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:83,85,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 3515 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:81,84,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 3516 . T C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=2.7391E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:63:62:1:1.59%:34,28,1,0 -Example1_ref 3517 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:79,83,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 3518 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:0:0%:78,81,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 3519 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:0:0%:74,78,0,0 0/0:.:55:55:0:0%:33,22,0,0 -Example1_ref 3520 . G T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=7.4648E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:75,83,1,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 3521 . A T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.3853E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:76,84,1,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 3522 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:77,83,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 3523 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:81,83,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 3524 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:79,81,0,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 3525 . C G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=7.2897E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:75,80,0,1 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 3526 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:76,83,0,0 0/0:.:60:60:0:0%:34,26,0,0 -Example1_ref 3527 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:76,82,0,0 0/0:.:60:60:0:0%:34,26,0,0 -Example1_ref 3528 . C A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.3023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:156:1:0.64%:73,83,1,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 3529 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:76,82,0,0 0/0:.:59:59:0:0%:33,26,0,0 -Example1_ref 3530 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:75,83,0,0 0/0:.:59:59:0:0%:34,25,0,0 -Example1_ref 3531 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:75,80,0,0 0/0:.:59:59:0:0%:34,25,0,0 -Example1_ref 3532 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:71,79,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 3533 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:73,77,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 3534 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:72,79,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 3535 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:75,78,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 3536 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:73,79,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 3537 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:73,80,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 3538 . T A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.156E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:73,82,0,1 0/0:.:62:62:0:0%:34,28,0,0 -Example1_ref 3539 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:73,84,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 3540 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:74,84,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 3541 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:73,82,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 3542 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:73,84,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 3543 . C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:73,83,0,0 0/0:.:65:65:0:0%:34,31,0,0 -Example1_ref 3544 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:75,85,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 3545 . A G . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.0222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:73,84,0,1 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 3546 . T C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.0721E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:74,82,0,1 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 3547 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:73,83,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 3548 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:74,85,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 3549 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:73,83,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 3550 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:72,82,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 3551 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 3552 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:73,82,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 3553 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 3554 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 3555 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 3556 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 3557 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 3558 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 3559 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:73,81,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 3560 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:73,79,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 3561 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 3562 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:75,81,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 3563 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:75,80,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 3564 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 3565 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:75,78,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 3566 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 3567 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:76,80,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 3568 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 3569 . A AGCT . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=7.0455E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:75,79,1,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 3570 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:74,80,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 3571 . A G . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=7.032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:75,78,0,1 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 3572 . C A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=2.963E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:75,77,0,0 0/0:.:64:63:1:1.56%:35,28,1,0 -Example1_ref 3573 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:68:67:0:0%:35,32,0,0 -Example1_ref 3574 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 3575 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:73,82,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 3576 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 3577 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:75,82,0,0 0/0:.:69:69:0:0%:36,33,0,0 -Example1_ref 3578 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:68:67:0:0%:34,33,0,0 -Example1_ref 3579 . C . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 3580 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:74,83,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 3581 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:75,84,0,0 0/0:.:69:69:0:0%:35,34,0,0 -Example1_ref 3582 . C T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.0089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:73,83,1,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 3583 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:74,81,0,0 0/0:.:69:69:0:0%:35,34,0,0 -Example1_ref 3584 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:70,79,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 3585 . T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:73,80,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 3586 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:72,80,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 3587 . G . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:70,79,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 3588 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:72,78,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 3589 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:70,78,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 3590 . CA C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=6.89E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:65,78,1,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 3591 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:68,80,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 3592 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:67,79,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 3593 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:66,80,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 3594 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:0:0%:67,81,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 3595 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:67,75,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 3596 . C A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=3.1527E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:65,74,0,0 0/0:.:64:63:1:1.56%:32,31,0,1 -Example1_ref 3597 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:68,74,0,0 0/0:.:63:63:0:0%:31,32,0,0 -Example1_ref 3598 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 3599 . T A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=6.8447E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:67,73,0,1 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 3600 . C CTCT . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=6.8473E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:1:0.72%:64,74,1,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 3601 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:63,78,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 3602 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:65,79,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 3603 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:65,79,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 3604 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:66,79,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 3605 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:64:64:0:0%:33,31,0,0 -Example1_ref 3606 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 3607 . C . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:65,76,0,0 0/0:.:62:62:0:0%:32,30,0,0 -Example1_ref 3608 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:65,75,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 3609 . T C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=6.8528E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:61,73,0,1 0/0:.:62:62:0:0%:32,30,0,0 -Example1_ref 3610 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:59,76,0,0 0/0:.:59:59:0:0%:29,30,0,0 -Example1_ref 3611 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:61,72,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 3612 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 3613 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 3614 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:61,71,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 3615 . C . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:55,72,0,0 0/0:.:57:56:0:0%:28,28,0,0 -Example1_ref 3616 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:57,73,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 3617 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:57,73,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 3618 . G GTCTGTCGCTTA . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=6.9312E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:57,73,1,0 0/0:.:58:58:0:0%:29,29,0,0 -Example1_ref 3619 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:54,73,0,0 0/0:.:58:58:0:0%:29,29,0,0 -Example1_ref 3620 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 3621 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:54,71,0,0 0/0:.:56:56:0:0%:28,28,0,0 -Example1_ref 3622 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:56,74,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 3623 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:56,73,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 3624 . C . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:54,69,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 3625 . G T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=6.9613E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:55,70,1,0 0/0:.:55:55:0:0%:30,25,0,0 -Example1_ref 3626 . A G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=3.027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:57,72,0,0 0/0:.:56:55:1:1.79%:31,24,0,1 -Example1_ref 3627 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:59,71,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 3628 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 3629 . C A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=7.0811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:130:1:0.76%:58,72,1,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 3630 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:59,77,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 3631 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:58,78,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 3632 . T C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=7.0157E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:59,74,0,1 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 3633 . A AGCT . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=2.9744E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:59,78,0,0 0/0:.:58:57:1:1.72%:31,26,1,0 -Example1_ref 3634 . G A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=5.0335E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:48,78,1,0 0/0:.:53:52:1:1.89%:26,26,1,0 -Example1_ref 3635 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:57,78,0,0 0/0:.:55:55:0:0%:30,25,0,0 -Example1_ref 3636 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 3637 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 3638 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:51,74,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 3639 . C A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=6.8182E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:50,69,0,1 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 3640 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:54,77,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 3641 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:54,77,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 3642 . T C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=4.898E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:50,77,1,0 0/0:.:52:50:1:1.96%:26,24,0,1 -Example1_ref 3643 . T C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=2.7485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:49,75,0,0 0/0:.:47:46:1:2.13%:23,23,0,1 -Example1_ref 3644 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:51,75,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 3645 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:51,75,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 3646 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:52,75,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 3647 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 3648 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:48,76,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 3649 . A ACTTCTTCAT . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=2.7684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:49:48:1:2.04%:27,21,1,0 -Example1_ref 3650 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:53,72,0,0 0/0:.:48:48:0:0%:27,21,0,0 -Example1_ref 3651 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:53,68,0,0 0/0:.:48:48:0:0%:27,21,0,0 -Example1_ref 3652 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:54,68,0,0 0/0:.:48:48:0:0%:27,21,0,0 -Example1_ref 3653 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:53,67,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 3654 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:55,64,0,0 0/0:.:50:50:0:0%:28,22,0,0 -Example1_ref 3655 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:54,65,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 3656 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:56,63,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 3657 . G T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=3.0357E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:55,62,0,0 0/0:.:51:50:1:1.96%:29,21,1,0 -Example1_ref 3658 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:56,64,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 3659 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:55,62,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 3660 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:54,61,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 3661 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:51:51:0:0%:29,22,0,0 -Example1_ref 3662 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:54,62,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 3663 . C . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:52,63,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 3664 . T A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=6.8072E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:53,59,0,1 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 3665 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 3666 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 3667 . G . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:49,61,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 3668 . G . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:48,62,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 3669 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:49,63,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 3670 . T G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=6.7683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:49,61,1,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 3671 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:48,61,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 3672 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:49,62,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 3673 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:50,62,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 3674 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 3675 . G GCTGT . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=6.747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:49,62,1,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 3676 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:50,60,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 3677 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:49,60,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 3678 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:47,58,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 3679 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:51,59,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 3680 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 3681 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:50,60,0,0 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 3682 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:51,60,0,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 3683 . T A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=6.9136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:50,61,1,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 3684 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:50,58,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 3685 . A C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=6.8387E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:49,56,0,1 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 3686 . T . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3687 . C . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 3688 . C . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 3689 . T . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 3690 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:50,56,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3691 . G . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3692 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 3693 . C A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=6.8387E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:105:1:0.94%:50,55,0,1 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 3694 . C . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:46,56,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3695 . A G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=6.9737E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:50,55,0,1 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 3696 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3697 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 3698 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3699 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 3700 . G . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 3701 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:45:45:0:0%:24,21,0,0 -Example1_ref 3702 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 3703 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:51,50,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 3704 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 3705 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 3706 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 3707 . A T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=3.0189E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:56,55,0,0 0/0:.:48:47:1:2.08%:24,23,1,0 -Example1_ref 3708 . C . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:56,54,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3709 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:54,52,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 3710 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 3711 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:0:0%:55,52,0,0 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 3712 . C A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=7.0323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:55,53,0,1 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 3713 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:55,52,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 3714 . C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:55,53,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 3715 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:55,54,0,0 0/0:.:48:47:0:0%:24,23,0,0 -Example1_ref 3716 . A T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=7.0122E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:58,56,1,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 3717 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:60,52,0,0 0/0:.:50:50:0:0%:28,22,0,0 -Example1_ref 3718 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:60,56,0,0 0/0:.:50:50:0:0%:28,22,0,0 -Example1_ref 3719 . A ATCTGTCTCT . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=3.0409E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:52:51:1:1.92%:29,22,1,0 -Example1_ref 3720 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:62,53,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 3721 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:49:49:0:0%:30,19,0,0 -Example1_ref 3722 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:50:50:0:0%:31,19,0,0 -Example1_ref 3723 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:48:48:0:0%:31,17,0,0 -Example1_ref 3724 . C . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:62,51,0,0 0/0:.:47:47:0:0%:30,17,0,0 -Example1_ref 3725 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:47:47:0:0%:30,17,0,0 -Example1_ref 3726 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:47:47:0:0%:30,17,0,0 -Example1_ref 3727 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:61,45,0,0 0/0:.:46:46:0:0%:30,16,0,0 -Example1_ref 3728 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:62,42,0,0 0/0:.:46:46:0:0%:31,15,0,0 -Example1_ref 3729 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:62,44,0,0 0/0:.:46:46:0:0%:30,16,0,0 -Example1_ref 3730 . C A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=4.8952E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:101:2:1.94%:58,43,0,2 0/0:.:44:44:0:0%:29,15,0,0 -Example1_ref 3731 . C T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=7.0504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:55,42,1,0 0/0:.:41:41:0:0%:26,15,0,0 -Example1_ref 3732 . C . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:43:43:0:0%:28,15,0,0 -Example1_ref 3733 . A . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:58,42,0,0 0/0:.:43:43:0:0%:28,15,0,0 -Example1_ref 3734 . G . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:42:42:0:0%:27,15,0,0 -Example1_ref 3735 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:42:42:0:0%:27,15,0,0 -Example1_ref 3736 . A . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:56,43,0,0 0/0:.:42:42:0:0%:28,14,0,0 -Example1_ref 3737 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:57,41,0,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 3738 . C G . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=6.831E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:56,40,1,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 3739 . G . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:44:44:0:0%:27,17,0,0 -Example1_ref 3740 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:55,44,0,0 0/0:.:44:44:0:0%:27,17,0,0 -Example1_ref 3741 . C . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 3742 . A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:52,45,0,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 3743 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 3744 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 3745 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:55,45,0,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 3746 . T . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:46:46:0:0%:28,18,0,0 -Example1_ref 3747 . C . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:46:46:0:0%:28,18,0,0 -Example1_ref 3748 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:55,47,0,0 0/0:.:46:46:0:0%:28,18,0,0 -Example1_ref 3749 . G T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=6.9178E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:1:0.99%:53,47,1,0 0/0:.:45:45:0:0%:27,18,0,0 -Example1_ref 3750 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:55,48,0,0 0/0:.:46:46:0:0%:28,18,0,0 -Example1_ref 3751 . G . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:0:0%:49,48,0,0 0/0:.:44:44:0:0%:27,17,0,0 -Example1_ref 3752 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:53,48,0,0 0/0:.:45:45:0:0%:27,18,0,0 -Example1_ref 3753 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:0:0%:54,48,0,0 0/0:.:46:46:0:0%:28,18,0,0 -Example1_ref 3754 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:54,47,0,0 0/0:.:46:46:0:0%:28,18,0,0 -Example1_ref 3755 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:56,47,0,0 0/0:.:45:45:0:0%:27,18,0,0 -Example1_ref 3756 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:47:47:0:0%:29,18,0,0 -Example1_ref 3757 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:47:47:0:0%:29,18,0,0 -Example1_ref 3758 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 3759 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:68,49,0,0 0/0:.:50:50:0:0%:32,18,0,0 -Example1_ref 3760 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:50:50:0:0%:32,18,0,0 -Example1_ref 3761 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:51:51:0:0%:33,18,0,0 -Example1_ref 3762 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:50:50:0:0%:32,18,0,0 -Example1_ref 3763 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:68,46,0,0 0/0:.:49:49:0:0%:33,16,0,0 -Example1_ref 3764 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:50:50:0:0%:34,16,0,0 -Example1_ref 3765 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:71,47,0,0 0/0:.:50:50:0:0%:34,16,0,0 -Example1_ref 3766 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 3767 . C A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=3.0769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:52:51:1:1.92%:36,15,0,1 -Example1_ref 3768 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:71,49,0,0 0/0:.:51:51:0:0%:35,16,0,0 -Example1_ref 3769 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3770 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:72,47,0,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 3771 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:71,47,0,0 0/0:.:51:51:0:0%:35,16,0,0 -Example1_ref 3772 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3773 . C . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:70,43,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3774 . C . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:72,44,0,0 0/0:.:51:51:0:0%:35,16,0,0 -Example1_ref 3775 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:72,42,0,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 3776 . C . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:72,43,0,0 0/0:.:50:50:0:0%:36,14,0,0 -Example1_ref 3777 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:72,43,0,0 0/0:.:51:51:0:0%:37,14,0,0 -Example1_ref 3778 . C A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=3.1515E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:0:0%:72,41,0,0 0/0:.:52:51:1:1.92%:37,14,0,1 -Example1_ref 3779 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:73,46,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 3780 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3781 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:72,47,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 3782 . G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:70,46,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 3783 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:52:52:0:0%:37,15,0,0 -Example1_ref 3784 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:73,42,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 3785 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:50:50:0:0%:34,16,0,0 -Example1_ref 3786 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 3787 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3788 . G GTAT . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=7.0787E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:74,51,0,1 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3789 . A AG . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=7.0455E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:1:0.81%:73,50,0,1 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3790 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 3791 . C A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=7.1186E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:75,50,0,1 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 3792 . A AG . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=7.0621E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:73,51,0,1 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 3793 . G . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 3794 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:79,50,0,0 0/0:.:56:56:0:0%:38,18,0,0 -Example1_ref 3795 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:55:55:0:0%:37,18,0,0 -Example1_ref 3796 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:79,51,0,0 0/0:.:54:54:0:0%:36,18,0,0 -Example1_ref 3797 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:55:55:0:0%:37,18,0,0 -Example1_ref 3798 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:82,53,0,0 0/0:.:55:55:0:0%:37,18,0,0 -Example1_ref 3799 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:82,53,0,0 0/0:.:55:55:0:0%:37,18,0,0 -Example1_ref 3800 . G T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=7.1123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:132:1:0.75%:78,54,1,0 0/0:.:54:54:0:0%:36,18,0,0 -Example1_ref 3801 . CA C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=7.0918E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:138:1:0.72%:84,54,0,1 0/0:.:57:57:0:0%:37,20,0,0 -Example1_ref 3802 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:136:0:0%:84,52,0,0 0/0:.:58:58:0:0%:38,20,0,0 -Example1_ref 3803 . GT G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=3.0366E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:81,52,0,0 0/0:.:58:57:1:1.72%:38,19,0,1 -Example1_ref 3804 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:0:0%:83,52,0,0 0/0:.:57:56:0:0%:37,19,0,0 -Example1_ref 3805 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:0:0%:84,59,0,0 0/0:.:60:60:0:0%:38,22,0,0 -Example1_ref 3806 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:0:0%:82,58,0,0 0/0:.:60:60:0:0%:37,23,0,0 -Example1_ref 3807 . C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:0:0%:80,56,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 3808 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:79,59,0,0 0/0:.:60:60:0:0%:38,22,0,0 -Example1_ref 3809 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:0:0%:82,55,0,0 0/0:.:61:61:0:0%:38,23,0,0 -Example1_ref 3810 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:85,60,0,0 0/0:.:64:64:0:0%:39,25,0,0 -Example1_ref 3811 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:85,60,0,0 0/0:.:63:63:0:0%:39,24,0,0 -Example1_ref 3812 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:84,57,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 3813 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:84,59,0,0 0/0:.:68:68:0:0%:39,29,0,0 -Example1_ref 3814 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:83,58,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 3815 . A C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=6.6986E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:82,57,1,0 0/0:.:69:69:0:0%:41,28,0,0 -Example1_ref 3816 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 3817 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:82,58,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 3818 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:79,58,0,0 0/0:.:68:68:0:0%:40,28,0,0 -Example1_ref 3819 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:81,51,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 3820 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:79,51,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 3821 . G . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 3822 . C A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=3.4343E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:68:67:1:1.47%:40,27,0,1 -Example1_ref 3823 . C A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:78,51,0,1 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 3824 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:79,56,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 3825 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 3826 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:68:68:0:0%:39,29,0,0 -Example1_ref 3827 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:80,54,0,0 0/0:.:67:67:0:0%:39,28,0,0 -Example1_ref 3828 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 3829 . C . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 3830 . G T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=6.6332E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:76,55,1,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 3831 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 3832 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 3833 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:76,58,0,0 0/0:.:71:71:0:0%:38,33,0,0 -Example1_ref 3834 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:77,58,0,0 0/0:.:69:69:0:0%:35,34,0,0 -Example1_ref 3835 . T G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=5.8469E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:76,54,0,1 0/0:.:72:71:1:1.39%:38,33,0,1 -Example1_ref 3836 . C A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=6.5347E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:75,56,0,1 0/0:.:70:70:0:0%:37,33,0,0 -Example1_ref 3837 . C A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=3.4653E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:70:69:1:1.43%:36,33,1,0 -Example1_ref 3838 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:76,60,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 3839 . C . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 3840 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:72,58,0,0 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 3841 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:71:70:0:0%:37,33,0,0 -Example1_ref 3842 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 3843 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 3844 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 3845 . C . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 3846 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 3847 . C A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=3.3838E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:67:66:1:1.49%:33,33,0,1 -Example1_ref 3848 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 3849 . G . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 3850 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 3851 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:74,56,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 3852 . C A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=3.2979E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:62:61:1:1.61%:30,31,0,1 -Example1_ref 3853 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:61:61:0:0%:30,31,0,0 -Example1_ref 3854 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 3855 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 3856 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 3857 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 3858 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:77,60,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 3859 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:76,59,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 3860 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 3861 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:75,60,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 3862 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:77,58,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 3863 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:78,59,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 3864 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:78,59,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 3865 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:78,56,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 3866 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:76,58,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 3867 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:76,55,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 3868 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 3869 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:75,58,0,0 0/0:.:63:63:0:0%:31,32,0,0 -Example1_ref 3870 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 3871 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 3872 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 3873 . T G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=3.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:66:65:1:1.52%:31,34,0,1 -Example1_ref 3874 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 3875 . C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 3876 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:72,58,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 3877 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 3878 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 3879 . G T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=6.7358E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:71,58,1,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 3880 . C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 3881 . T G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=6.8367E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:74,59,1,0 0/0:.:62:62:0:0%:28,34,0,0 -Example1_ref 3882 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 3883 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 3884 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 3885 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 3886 . C T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=4.569E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:132:2:1.49%:72,60,1,1 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 3887 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:75,60,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 3888 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:72,61,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 3889 . G A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:69,58,0,1 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 3890 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:64:64:0:0%:27,37,0,0 -Example1_ref 3891 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:72,60,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 3892 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:70,59,0,0 0/0:.:63:63:0:0%:28,35,0,0 -Example1_ref 3893 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:68,60,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 3894 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:69,59,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 3895 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:68,60,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 3896 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:67,59,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 3897 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 3898 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:67:67:0:0%:27,40,0,0 -Example1_ref 3899 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:65,61,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 3900 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:66,61,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 3901 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 3902 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:64,61,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 3903 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:66,61,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 3904 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:62,62,0,0 0/0:.:67:67:0:0%:27,40,0,0 -Example1_ref 3905 . G . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:66:66:0:0%:26,40,0,0 -Example1_ref 3906 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:61,59,0,0 0/0:.:66:66:0:0%:26,40,0,0 -Example1_ref 3907 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:64,61,0,0 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 3908 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:66,62,0,0 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 3909 . A C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=6.6316E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:125:1:0.79%:60,65,1,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3910 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:63,63,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3911 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 3912 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:63,64,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3913 . C A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=6.7016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:127:1:0.78%:62,65,1,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 3914 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:61,64,0,0 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 3915 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:59,67,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3916 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:62,67,0,0 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 3917 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:59,66,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3918 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:60,66,0,0 0/0:.:66:66:0:0%:25,41,0,0 -Example1_ref 3919 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:62,66,0,0 0/0:.:66:66:0:0%:25,41,0,0 -Example1_ref 3920 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:64,66,0,0 0/0:.:69:69:0:0%:27,42,0,0 -Example1_ref 3921 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:63,63,0,0 0/0:.:67:67:0:0%:25,42,0,0 -Example1_ref 3922 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:64,65,0,0 0/0:.:67:67:0:0%:26,41,0,0 -Example1_ref 3923 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:68:68:0:0%:26,42,0,0 -Example1_ref 3924 . A T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=6.5803E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:59,67,1,0 0/0:.:66:66:0:0%:25,41,0,0 -Example1_ref 3925 . T G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=6.5803E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:60,66,0,1 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 3926 . G A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=6.6169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:65,67,0,1 0/0:.:68:68:0:0%:26,42,0,0 -Example1_ref 3927 . A ATCCTG . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=3.3166E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:66,67,0,0 0/0:.:66:65:1:1.52%:24,41,1,0 -Example1_ref 3928 . T A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=6.7442E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:79,65,0,1 0/0:.:70:70:0:0%:28,42,0,0 -Example1_ref 3929 . C . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:79,65,0,0 0/0:.:71:71:0:0%:29,42,0,0 -Example1_ref 3930 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:81,64,0,0 0/0:.:70:70:0:0%:29,41,0,0 -Example1_ref 3931 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:79,62,0,0 0/0:.:71:71:0:0%:29,42,0,0 -Example1_ref 3932 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:79,66,0,0 0/0:.:71:71:0:0%:29,42,0,0 -Example1_ref 3933 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:81,64,0,0 0/0:.:72:72:0:0%:29,43,0,0 -Example1_ref 3934 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:80,65,0,0 0/0:.:71:71:0:0%:28,43,0,0 -Example1_ref 3935 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:81,63,0,0 0/0:.:71:71:0:0%:28,43,0,0 -Example1_ref 3936 . G GCTGTCTCT . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=6.7136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:80,62,1,0 0/0:.:70:70:0:0%:28,42,0,0 -Example1_ref 3937 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:80,61,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 3938 . G T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=4.4125E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:137:2:1.44%:76,61,2,0 0/0:.:70:70:0:0%:28,42,0,0 -Example1_ref 3939 . A T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=6.7453E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:78,64,1,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 3940 . C . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 3941 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:78,63,0,0 0/0:.:70:70:0:0%:28,42,0,0 -Example1_ref 3942 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:79,63,0,0 0/0:.:70:70:0:0%:27,43,0,0 -Example1_ref 3943 . G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:79,63,0,0 0/0:.:69:69:0:0%:27,42,0,0 -Example1_ref 3944 . A ACAG . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=6.7773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:79,63,0,1 0/0:.:68:68:0:0%:25,43,0,0 -Example1_ref 3945 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:74,65,0,0 0/0:.:68:68:0:0%:25,43,0,0 -Example1_ref 3946 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:72,63,0,0 0/0:.:70:70:0:0%:27,43,0,0 -Example1_ref 3947 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:72,64,0,0 0/0:.:69:69:0:0%:26,43,0,0 -Example1_ref 3948 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:72,66,0,0 0/0:.:69:69:0:0%:26,43,0,0 -Example1_ref 3949 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:70,64,0,0 0/0:.:67:67:0:0%:25,42,0,0 -Example1_ref 3950 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:67,66,0,0 0/0:.:68:68:0:0%:25,43,0,0 -Example1_ref 3951 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:68,67,0,0 0/0:.:67:67:0:0%:24,43,0,0 -Example1_ref 3952 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:67,67,0,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 3953 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:66,67,0,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 3954 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:67,65,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3955 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:68,66,0,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 3956 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:64,65,0,0 0/0:.:62:62:0:0%:22,40,0,0 -Example1_ref 3957 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:67,64,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3958 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:67,65,0,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 3959 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:68,63,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 3960 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:67,65,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 3961 . C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:69,63,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 3962 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:66,64,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3963 . C A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=6.7347E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:66,65,0,1 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 3964 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:68,66,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 3965 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:69,67,0,0 0/0:.:63:63:0:0%:22,41,0,0 -Example1_ref 3966 . G T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=6.7692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:64,67,1,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 3967 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:70,68,0,0 0/0:.:63:63:0:0%:22,41,0,0 -Example1_ref 3968 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:67,66,0,0 0/0:.:62:62:0:0%:22,40,0,0 -Example1_ref 3969 . C G . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1.0325E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:70,62,0,0 0/0:.:63:61:2:3.17%:22,39,1,1 -Example1_ref 3970 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:70,64,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 3971 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:65:65:0:0%:26,39,0,0 -Example1_ref 3972 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:73,65,0,0 0/0:.:67:67:0:0%:26,41,0,0 -Example1_ref 3973 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:72,64,0,0 0/0:.:66:66:0:0%:26,40,0,0 -Example1_ref 3974 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:73,61,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 3975 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:73,59,0,0 0/0:.:64:64:0:0%:25,39,0,0 -Example1_ref 3976 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:70,55,0,0 0/0:.:62:62:0:0%:24,38,0,0 -Example1_ref 3977 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:63:63:0:0%:25,38,0,0 -Example1_ref 3978 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 3979 . C . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:60:60:0:0%:24,36,0,0 -Example1_ref 3980 . G . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:70,55,0,0 0/0:.:62:62:0:0%:24,38,0,0 -Example1_ref 3981 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:69,56,0,0 0/0:.:61:61:0:0%:23,38,0,0 -Example1_ref 3982 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:66,56,0,0 0/0:.:62:62:0:0%:24,38,0,0 -Example1_ref 3983 . C . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:66,55,0,0 0/0:.:58:58:0:0%:22,36,0,0 -Example1_ref 3984 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:67,54,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 3985 . G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:67,55,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 3986 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:67,54,0,0 0/0:.:55:55:0:0%:22,33,0,0 -Example1_ref 3987 . C A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=6.8571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:66,53,0,1 0/0:.:55:55:0:0%:22,33,0,0 -Example1_ref 3988 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 3989 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 3990 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:56:56:0:0%:22,34,0,0 -Example1_ref 3991 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:65,53,0,0 0/0:.:55:55:0:0%:21,34,0,0 -Example1_ref 3992 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:56:56:0:0%:22,34,0,0 -Example1_ref 3993 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:65,53,0,0 0/0:.:58:58:0:0%:23,35,0,0 -Example1_ref 3994 . C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 3995 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 3996 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:70,48,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 3997 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:70,46,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 3998 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 3999 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 4000 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 4001 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:51:51:0:0%:21,30,0,0 -Example1_ref 4002 . A AC . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=2.9651E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:71,50,0,0 0/0:.:51:50:1:1.96%:21,29,1,0 -Example1_ref 4003 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 4004 . G . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 4005 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:72,47,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 4006 . C A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=2.7219E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:74,49,0,0 0/0:.:46:45:1:2.17%:20,25,0,1 -Example1_ref 4007 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 4008 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 4009 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 4010 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:80,53,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 4011 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:78,56,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 4012 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:79,56,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 4013 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:51:51:0:0%:24,27,0,0 -Example1_ref 4014 . T . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:82,54,0,0 0/0:.:51:51:0:0%:24,27,0,0 -Example1_ref 4015 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:82,55,0,0 0/0:.:51:51:0:0%:24,27,0,0 -Example1_ref 4016 . C A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=7.3822E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:85,55,0,1 0/0:.:50:50:0:0%:24,26,0,0 -Example1_ref 4017 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:86,56,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 4018 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:84,56,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 4019 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 4020 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 4021 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:86,54,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 4022 . G T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=7.3057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:85,55,0,1 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 4023 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:85,53,0,0 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 4024 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:86,55,0,0 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 4025 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:85,55,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 4026 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:86,55,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 4027 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:87,55,0,0 0/0:.:51:51:0:0%:27,24,0,0 -Example1_ref 4028 . A T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:86,56,1,0 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 4029 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:86,54,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 4030 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:88,55,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 4031 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 4032 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:91,58,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 4033 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:91,58,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 4034 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:88,59,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 4035 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:91,58,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 4036 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:93,60,0,0 0/0:.:53:53:0:0%:28,25,0,0 -Example1_ref 4037 . G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:89,56,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 4038 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:93,57,0,0 0/0:.:52:52:0:0%:26,26,0,0 -Example1_ref 4039 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:95,58,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 4040 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:94,59,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 4041 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:89,56,0,0 0/0:.:52:52:0:0%:26,26,0,0 -Example1_ref 4042 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:90,61,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 4043 . G T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=2.6733E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:54:53:1:1.85%:26,27,1,0 -Example1_ref 4044 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 4045 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:93,60,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 4046 . G A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.3762E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:90,58,1,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 4047 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:91,57,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 4048 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:90,59,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 4049 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:87,60,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 4050 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:90,60,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 4051 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:90,61,0,0 0/0:.:52:52:0:0%:26,26,0,0 -Example1_ref 4052 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:91,61,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 4053 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:93,59,0,0 0/0:.:48:48:0:0%:27,21,0,0 -Example1_ref 4054 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:92,62,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 4055 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 4056 . C A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=7.5862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:92,61,1,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 4057 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:93,61,0,0 0/0:.:48:48:0:0%:26,22,0,0 -Example1_ref 4058 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:94,62,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 4059 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:94,58,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 4060 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:95,57,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 4061 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:51:51:0:0%:27,24,0,0 -Example1_ref 4062 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:98,62,0,0 0/0:.:51:51:0:0%:27,24,0,0 -Example1_ref 4063 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:97,63,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 4064 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:96,60,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 4065 . C CT . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=2.3585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:50:49:1:2%:24,25,1,0 -Example1_ref 4066 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:99,63,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 4067 . A G . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=4.2608E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:99,63,0,1 0/0:.:52:51:1:1.92%:27,24,0,1 -Example1_ref 4068 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 4069 . A T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=2.4186E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:98,65,0,0 0/0:.:52:51:1:1.92%:25,26,1,0 -Example1_ref 4070 . G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 4071 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:97,63,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 4072 . G . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:98,63,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 4073 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:94,60,0,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 4074 . T C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=7.619E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:97,62,0,1 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 4075 . G A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=7.5829E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:159:1:0.62%:98,61,0,1 0/0:.:51:51:0:0%:27,24,0,0 -Example1_ref 4076 . A G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=7.5845E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:96,60,0,1 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 4077 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:105,62,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 4078 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:111,61,0,0 0/0:.:51:51:0:0%:27,24,0,0 -Example1_ref 4079 . GT G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=7.6856E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:113,62,1,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 4080 . T G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=7.7056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:117,60,0,1 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 4081 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:117,60,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 4082 . T G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=2.2747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:117,63,0,0 0/0:.:53:52:1:1.89%:30,22,0,1 -Example1_ref 4083 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:118,65,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 4084 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:117,63,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 4085 . A ACCTGT . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.6471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:117,64,1,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 4086 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:117,65,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 4087 . A AG . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=7.8603E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:116,63,0,1 0/0:.:49:49:0:0%:28,21,0,0 -Example1_ref 4088 . G GTTCTGGTTT . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.8696E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:1:0.55%:115,65,1,0 0/0:.:49:49:0:0%:28,21,0,0 -Example1_ref 4089 . T . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:119,65,0,0 0/0:.:53:52:0:0%:30,22,0,0 -Example1_ref 4090 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:117,68,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 4091 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:120,68,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 4092 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:118,67,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 4093 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:119,67,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 4094 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:118,67,0,0 0/0:.:49:49:0:0%:29,20,0,0 -Example1_ref 4095 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:122,67,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 4096 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:121,65,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 4097 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:119,64,0,0 0/0:.:49:49:0:0%:30,19,0,0 -Example1_ref 4098 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:120,63,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 4099 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:120,66,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 4100 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:121,68,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 4101 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:122,69,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 4102 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:123,70,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 4103 . C . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:121,71,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 4104 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:123,73,0,0 0/0:.:48:48:0:0%:26,22,0,0 -Example1_ref 4105 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:119,76,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 4106 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:117,77,0,0 0/0:.:51:51:0:0%:29,22,0,0 -Example1_ref 4107 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:119,75,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 4108 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:126,76,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 4109 . C . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:127,76,0,0 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 4110 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:127,79,0,0 0/0:.:50:50:0:0%:28,22,0,0 -Example1_ref 4111 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:129,81,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 4112 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:130,84,0,0 0/0:.:51:51:0:0%:29,22,0,0 -Example1_ref 4113 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:131,87,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 4114 . C A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=8.0451E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:130,83,0,1 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 4115 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=8.1818E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:129,86,1,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 4116 . C T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=8.097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:129,87,0,1 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 4117 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:128,92,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 4118 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:121,94,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 4119 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:117,95,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 4120 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:122,93,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 4121 . T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:122,97,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 4122 . C T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:126,93,1,0 0/0:.:55:55:0:0%:30,25,0,0 -Example1_ref 4123 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:126,102,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 4124 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:127,101,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 4125 . G T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=8.007E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:1:0.44%:126,102,1,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 4126 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:128,102,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 4127 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:128,103,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 4128 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:127,102,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 4129 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:129,98,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 4130 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:126,94,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 4131 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:127,99,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 4132 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:126,98,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 4133 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:126,103,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 4134 . G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:124,104,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 4135 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:126,105,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 4136 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:127,105,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 4137 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:129,105,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 4138 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:129,107,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 4139 . G . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:129,106,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 4140 . G T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=8.0208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:125,105,1,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 4141 . A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:125,105,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 4142 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:126,102,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 4143 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:129,104,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 4144 . G GC . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.8859E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:128,106,1,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 4145 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:128,106,0,0 0/0:.:62:62:0:0%:32,30,0,0 -Example1_ref 4146 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:128,108,0,0 0/0:.:62:62:0:0%:31,31,0,0 -Example1_ref 4147 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:129,106,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 4148 . T A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.8451E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:232:1:0.43%:129,103,1,0 0/0:.:64:64:0:0%:33,31,0,0 -Example1_ref 4149 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:128,104,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 4150 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:0:0%:128,105,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 4151 . G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:127,105,0,0 0/0:.:60:60:0:0%:29,31,0,0 -Example1_ref 4152 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:126,105,0,0 0/0:.:63:63:0:0%:31,32,0,0 -Example1_ref 4153 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:129,105,0,0 0/0:.:63:63:0:0%:31,32,0,0 -Example1_ref 4154 . G . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:123,104,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 4155 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:125,104,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 4156 . C . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:126,107,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 4157 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:125,108,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 4158 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:124,106,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 4159 . C . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:125,106,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 4160 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:126,105,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 4161 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:124,105,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 4162 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:123,105,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 4163 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:123,106,0,0 0/0:.:67:67:0:0%:30,37,0,0 -Example1_ref 4164 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:124,107,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 4165 . T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:121,108,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 4166 . G . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:119,106,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 4167 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:119,106,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 4168 . T C . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=7.8305E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:121,109,1,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 4169 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:121,106,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 4170 . T A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=7.7441E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:122,107,1,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 4171 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:123,108,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 4172 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:122,107,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 4173 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:123,104,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 4174 . T C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=2.2789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:121,106,0,0 0/0:.:67:66:1:1.49%:29,37,1,0 -Example1_ref 4175 . C A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=2.2109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:123,106,0,0 0/0:.:65:64:1:1.54%:30,34,0,1 -Example1_ref 4176 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:120,104,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 4177 . T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:121,108,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 4178 . C A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=7.7474E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:118,108,0,1 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 4179 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:118,109,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 4180 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:117,110,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 4181 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:119,110,0,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 4182 . G A . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=5.9628E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:229:2:0.87%:119,110,1,1 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 4183 . T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:122,111,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 4184 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:116,110,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 4185 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:67:67:0:0%:30,37,0,0 -Example1_ref 4186 . T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:115,109,0,0 0/0:.:67:67:0:0%:29,38,0,0 -Example1_ref 4187 . C G . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=2.2559E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:116,114,0,0 0/0:.:67:66:1:1.49%:27,39,1,0 -Example1_ref 4188 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:116,110,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 4189 . A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:117,113,0,0 0/0:.:71:71:0:0%:30,41,0,0 -Example1_ref 4190 . C . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:114,111,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 4191 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:116,113,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 4192 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:119,112,0,0 0/0:.:71:71:0:0%:31,40,0,0 -Example1_ref 4193 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:119,113,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 4194 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:0:0%:114,113,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 4195 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:115,113,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 4196 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 4197 . G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 4198 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:115,104,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 4199 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 4200 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:108,105,0,0 0/0:.:65:65:0:0%:28,37,0,0 -Example1_ref 4201 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:110,102,0,0 0/0:.:65:65:0:0%:28,37,0,0 -Example1_ref 4202 . A G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:214:1:0.47%:111,103,1,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 4203 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:109,105,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 4204 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:109,108,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 4205 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:109,107,0,0 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 4206 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:108,103,0,0 0/0:.:61:61:0:0%:26,35,0,0 -Example1_ref 4207 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:107,106,0,0 0/0:.:64:64:0:0%:27,37,0,0 -Example1_ref 4208 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 4209 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 4210 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:103,104,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 4211 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:104,104,0,0 0/0:.:60:60:0:0%:26,34,0,0 -Example1_ref 4212 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:106,103,0,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 4213 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:107,104,0,0 0/0:.:58:58:0:0%:23,35,0,0 -Example1_ref 4214 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:105,102,0,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 4215 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:108,104,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 4216 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:104,105,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 4217 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 4218 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:105,103,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 4219 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:106,103,0,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 4220 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:104,103,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 4221 . T A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=2.3077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:101,99,0,0 0/0:.:61:59:1:1.67%:24,35,0,1 -Example1_ref 4222 . C . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:102,104,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 4223 . G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:102,104,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 4224 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 4225 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:101,103,0,0 0/0:.:58:58:0:0%:22,36,0,0 -Example1_ref 4226 . A T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=2.3372E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:97,103,0,0 0/0:.:61:60:1:1.64%:25,35,0,1 -Example1_ref 4227 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:99,103,0,0 0/0:.:60:60:0:0%:24,36,0,0 -Example1_ref 4228 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 4229 . T . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:101,107,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 4230 . G T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.6515E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:94,107,1,0 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 4231 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:102,107,0,0 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 4232 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:100,105,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 4233 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 4234 . G T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.7099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:96,105,1,0 0/0:.:60:60:0:0%:23,37,0,0 -Example1_ref 4235 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:95,102,0,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 4236 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:101,102,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 4237 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:103,104,0,0 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 4238 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:102,102,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 4239 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:100,102,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 4240 . T . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:97,104,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 4241 . G GTATAAGAGACA . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=7.6448E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:96,101,0,1 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 4242 . G A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=7.6863E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:93,102,1,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 4243 . AT A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=7.5676E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:95,100,0,1 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 4244 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:0:0%:97,100,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 4245 . C A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=4.332E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:197:3:1.5%:98,99,1,2 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 4246 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:100,102,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 4247 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:63:63:0:0%:28,35,0,0 -Example1_ref 4248 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:100,101,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 4249 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 4250 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:100,102,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 4251 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:97,104,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 4252 . C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:93,101,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 4253 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:63:63:0:0%:28,35,0,0 -Example1_ref 4254 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:89,102,0,0 0/0:.:61:61:0:0%:28,33,0,0 -Example1_ref 4255 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:92,100,0,0 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 4256 . T A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=7.5686E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:93,99,0,1 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 4257 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:88,100,0,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 4258 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:91,98,0,0 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 4259 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:92,101,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 4260 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:92,105,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 4261 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:91,104,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 4262 . A C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.5097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:192:1:0.52%:87,105,1,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 4263 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:91,103,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 4264 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:94,98,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 4265 . C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:94,102,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 4266 . C . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:89,100,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 4267 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:86,99,0,0 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 4268 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:76,103,0,0 0/0:.:60:60:0:0%:24,36,0,0 -Example1_ref 4269 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:73,104,0,0 0/0:.:57:57:0:0%:21,36,0,0 -Example1_ref 4270 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:74,106,0,0 0/0:.:60:60:0:0%:24,36,0,0 -Example1_ref 4271 . T A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=7.4694E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:76,106,0,1 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 4272 . C . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:77,102,0,0 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 4273 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:78,103,0,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 4274 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:76,104,0,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 4275 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:78,105,0,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 4276 . GGCATCA G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=7.6763E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:77,107,1,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 4277 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:74,106,0,0 0/0:.:58:58:0:0%:23,35,0,0 -Example1_ref 4278 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:73,104,0,0 0/0:.:55:55:0:0%:21,34,0,0 -Example1_ref 4279 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:71,104,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 4280 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:74,105,0,0 0/0:.:53:53:0:0%:21,32,0,0 -Example1_ref 4281 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:76,107,0,0 0/0:.:53:53:0:0%:21,32,0,0 -Example1_ref 4282 . A T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.7731E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:76,108,1,0 0/0:.:53:53:0:0%:20,33,0,0 -Example1_ref 4283 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:76,106,0,0 0/0:.:54:54:0:0%:21,33,0,0 -Example1_ref 4284 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:76,109,0,0 0/0:.:53:53:0:0%:20,33,0,0 -Example1_ref 4285 . A AG . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.6522E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:72,103,0,1 0/0:.:54:54:0:0%:21,33,0,0 -Example1_ref 4286 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:76,100,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 4287 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:75,102,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 4288 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:70,102,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 4289 . C A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=7.6682E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:71,99,0,1 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 4290 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:73,95,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 4291 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:66,96,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 4292 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:68,91,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 4293 . C T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.5243E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:66,88,0,1 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 4294 . C CA . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=4.3103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:153:1:0.65%:64,89,1,0 0/0:.:50:49:1:2%:20,29,1,0 -Example1_ref 4295 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:66,83,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 4296 . A G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.5758E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:66,83,1,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 4297 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:67,83,0,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 4298 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:64,82,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 4299 . C CCTGTCTCTT . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=7.5385E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:63,83,1,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 4300 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:0:0%:61,75,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 4301 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:61,75,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 4302 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:61,75,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 4303 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 4304 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:58,68,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 4305 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:57,70,0,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 4306 . A G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=7.2781E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:57,65,0,1 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 4307 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:56,66,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 4308 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:58,64,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 4309 . C . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:55,66,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 4310 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:55,58,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 4311 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:44:44:0:0%:18,26,0,0 -Example1_ref 4312 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:55,53,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 4313 . C . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:55,61,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 4314 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 4315 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:42:42:0:0%:17,25,0,0 -Example1_ref 4316 . C . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 4317 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:56,59,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 4318 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:59,57,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 4319 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 4320 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 4321 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:58,59,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 4322 . C . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 4323 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:58,57,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 4324 . C G . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=2.6994E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:44:43:1:2.27%:19,24,0,1 -Example1_ref 4325 . A T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=2.6875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:43:42:1:2.33%:18,24,0,1 -Example1_ref 4326 . T A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=2.7329E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:0:0%:63,54,0,0 0/0:.:44:43:1:2.27%:19,24,0,1 -Example1_ref 4327 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:63,55,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 4328 . A T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=2.638E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:43:42:1:2.33%:18,24,0,1 -Example1_ref 4329 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 4330 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:65,55,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 4331 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:65,55,0,0 0/0:.:42:42:0:0%:17,25,0,0 -Example1_ref 4332 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 4333 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:0:0%:64,53,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 4334 . G T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:116:1:0.85%:63,53,0,1 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 4335 . G A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=7.4497E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:110:1:0.9%:56,54,1,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 4336 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:58,54,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 4337 . G . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 4338 . T . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:59,53,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 4339 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:64,53,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 4340 . C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:61,54,0,0 0/0:.:40:40:0:0%:20,20,0,0 -Example1_ref 4341 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 4342 . G . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:40:40:0:0%:20,20,0,0 -Example1_ref 4343 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 4344 . C . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:40:40:0:0%:20,20,0,0 -Example1_ref 4345 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:61,52,0,0 0/0:.:36:36:0:0%:19,17,0,0 -Example1_ref 4346 . G A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=7.5974E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:116:1:0.85%:63,53,1,0 0/0:.:37:37:0:0%:20,17,0,0 -Example1_ref 4347 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:36:36:0:0%:18,18,0,0 -Example1_ref 4348 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:39:39:0:0%:21,18,0,0 -Example1_ref 4349 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 4350 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:39:39:0:0%:21,18,0,0 -Example1_ref 4351 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:37:37:0:0%:21,16,0,0 -Example1_ref 4352 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 4353 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:35:35:0:0%:19,16,0,0 -Example1_ref 4354 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:37:37:0:0%:21,16,0,0 -Example1_ref 4355 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 4356 . G T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=7.707E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:67,53,1,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 4357 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:70,51,0,0 0/0:.:37:37:0:0%:20,17,0,0 -Example1_ref 4358 . G . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:69,53,0,0 0/0:.:37:37:0:0%:20,17,0,0 -Example1_ref 4359 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 4360 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:68,52,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 4361 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 4362 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:39:39:0:0%:22,17,0,0 -Example1_ref 4363 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 4364 . C . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:39:39:0:0%:22,17,0,0 -Example1_ref 4365 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:39:39:0:0%:22,17,0,0 -Example1_ref 4366 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:39:39:0:0%:22,17,0,0 -Example1_ref 4367 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 4368 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:79,54,0,0 0/0:.:41:41:0:0%:23,18,0,0 -Example1_ref 4369 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:79,52,0,0 0/0:.:40:40:0:0%:24,16,0,0 -Example1_ref 4370 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:82,53,0,0 0/0:.:40:40:0:0%:24,16,0,0 -Example1_ref 4371 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:40:40:0:0%:24,16,0,0 -Example1_ref 4372 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:40:40:0:0%:24,16,0,0 -Example1_ref 4373 . G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 4374 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:79,54,0,0 0/0:.:38:38:0:0%:22,16,0,0 -Example1_ref 4375 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:80,54,0,0 0/0:.:39:39:0:0%:24,15,0,0 -Example1_ref 4376 . G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:39:39:0:0%:24,15,0,0 -Example1_ref 4377 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:79,53,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 4378 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 4379 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:38:38:0:0%:24,14,0,0 -Example1_ref 4380 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:38:38:0:0%:24,14,0,0 -Example1_ref 4381 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:38:38:0:0%:24,14,0,0 -Example1_ref 4382 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 4383 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 4384 . C . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 4385 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 4386 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:70,52,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 4387 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 4388 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:74,51,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 4389 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 4390 . A C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=2.284E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:74,51,0,0 0/0:.:37:36:1:2.7%:21,15,1,0 -Example1_ref 4391 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:36:36:0:0%:23,13,0,0 -Example1_ref 4392 . C . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:35:35:0:0%:22,13,0,0 -Example1_ref 4393 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:75,55,0,0 0/0:.:38:38:0:0%:22,16,0,0 -Example1_ref 4394 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 4395 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:74,56,0,0 0/0:.:35:35:0:0%:20,15,0,0 -Example1_ref 4396 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:37:37:0:0%:21,16,0,0 -Example1_ref 4397 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:35:35:0:0%:19,16,0,0 -Example1_ref 4398 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:79,57,0,0 0/0:.:40:40:0:0%:24,16,0,0 -Example1_ref 4399 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:79,53,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 4400 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 4401 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:80,55,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 4402 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:38:38:0:0%:22,16,0,0 -Example1_ref 4403 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 4404 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:40:40:0:0%:24,16,0,0 -Example1_ref 4405 . G T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=7.8488E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:77,57,1,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 4406 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:40:40:0:0%:25,15,0,0 -Example1_ref 4407 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:39:39:0:0%:25,14,0,0 -Example1_ref 4408 . C A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=5.9861E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:125:2:1.57%:75,50,0,2 0/0:.:37:37:0:0%:24,13,0,0 -Example1_ref 4409 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:74,58,0,0 0/0:.:37:37:0:0%:22,15,0,0 -Example1_ref 4410 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:81,60,0,0 0/0:.:44:44:0:0%:28,16,0,0 -Example1_ref 4411 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:82,58,0,0 0/0:.:44:44:0:0%:28,16,0,0 -Example1_ref 4412 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:80,53,0,0 0/0:.:42:42:0:0%:28,14,0,0 -Example1_ref 4413 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:44:44:0:0%:28,16,0,0 -Example1_ref 4414 . CG C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=7.7401E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:79,57,1,0 0/0:.:40:40:0:0%:25,15,0,0 -Example1_ref 4415 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:78,57,0,0 0/0:.:43:43:0:0%:28,15,0,0 -Example1_ref 4416 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:43:43:0:0%:27,16,0,0 -Example1_ref 4417 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:75,58,0,0 0/0:.:44:44:0:0%:28,16,0,0 -Example1_ref 4418 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:75,58,0,0 0/0:.:40:40:0:0%:26,14,0,0 -Example1_ref 4419 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:40:40:0:0%:26,14,0,0 -Example1_ref 4420 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:79,54,0,0 0/0:.:42:42:0:0%:28,14,0,0 -Example1_ref 4421 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:40:40:0:0%:26,14,0,0 -Example1_ref 4422 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:40:40:0:0%:27,13,0,0 -Example1_ref 4423 . C A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=7.6471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:79,50,0,1 0/0:.:40:40:0:0%:27,13,0,0 -Example1_ref 4424 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:42:42:0:0%:28,14,0,0 -Example1_ref 4425 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:43:43:0:0%:29,14,0,0 -Example1_ref 4426 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:77,55,0,0 0/0:.:43:43:0:0%:29,14,0,0 -Example1_ref 4427 . A G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=7.6301E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:77,54,1,0 0/0:.:41:41:0:0%:26,15,0,0 -Example1_ref 4428 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:44:44:0:0%:29,15,0,0 -Example1_ref 4429 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:42:42:0:0%:27,15,0,0 -Example1_ref 4430 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:78,56,0,0 0/0:.:42:42:0:0%:27,15,0,0 -Example1_ref 4431 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:79,57,0,0 0/0:.:45:45:0:0%:29,16,0,0 -Example1_ref 4432 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:79,57,0,0 0/0:.:45:45:0:0%:29,16,0,0 -Example1_ref 4433 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:80,58,0,0 0/0:.:44:44:0:0%:28,16,0,0 -Example1_ref 4434 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:45:45:0:0%:29,16,0,0 -Example1_ref 4435 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:44:44:0:0%:27,17,0,0 -Example1_ref 4436 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:43:43:0:0%:27,16,0,0 -Example1_ref 4437 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:75,56,0,0 0/0:.:43:43:0:0%:26,17,0,0 -Example1_ref 4438 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:78,60,0,0 0/0:.:42:42:0:0%:26,16,0,0 -Example1_ref 4439 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:82,59,0,0 0/0:.:43:43:0:0%:26,17,0,0 -Example1_ref 4440 . G A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=7.672E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:86,58,1,0 0/0:.:44:44:0:0%:28,16,0,0 -Example1_ref 4441 . A G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=7.5806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:83,57,1,0 0/0:.:45:45:0:0%:28,17,0,0 -Example1_ref 4442 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:86,59,0,0 0/0:.:45:45:0:0%:29,16,0,0 -Example1_ref 4443 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:90,57,0,0 0/0:.:47:47:0:0%:30,17,0,0 -Example1_ref 4444 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:97,62,0,0 0/0:.:49:49:0:0%:32,17,0,0 -Example1_ref 4445 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:98,60,0,0 0/0:.:48:48:0:0%:32,16,0,0 -Example1_ref 4446 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:104,65,0,0 0/0:.:49:49:0:0%:32,17,0,0 -Example1_ref 4447 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:105,63,0,0 0/0:.:48:48:0:0%:31,17,0,0 -Example1_ref 4448 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:103,64,0,0 0/0:.:48:48:0:0%:32,16,0,0 -Example1_ref 4449 . C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:107,63,0,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 4450 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:108,60,0,0 0/0:.:50:50:0:0%:36,14,0,0 -Example1_ref 4451 . G . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:123,62,0,0 0/0:.:52:52:0:0%:38,14,0,0 -Example1_ref 4452 . T C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=2.2222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:122,60,0,0 0/0:.:52:51:1:1.92%:37,14,1,0 -Example1_ref 4453 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:121,62,0,0 0/0:.:50:50:0:0%:36,14,0,0 -Example1_ref 4454 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:123,61,0,0 0/0:.:50:50:0:0%:36,14,0,0 -Example1_ref 4455 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:123,62,0,0 0/0:.:51:51:0:0%:37,14,0,0 -Example1_ref 4456 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:123,63,0,0 0/0:.:54:54:0:0%:40,14,0,0 -Example1_ref 4457 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:127,65,0,0 0/0:.:54:54:0:0%:40,14,0,0 -Example1_ref 4458 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:134,63,0,0 0/0:.:57:57:0:0%:42,15,0,0 -Example1_ref 4459 . C A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=7.7866E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:134,62,0,1 0/0:.:56:56:0:0%:41,15,0,0 -Example1_ref 4460 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:135,61,0,0 0/0:.:54:54:0:0%:40,14,0,0 -Example1_ref 4461 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:131,61,0,0 0/0:.:54:54:0:0%:40,14,0,0 -Example1_ref 4462 . T C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=2.1032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:139,60,0,0 0/0:.:53:52:1:1.89%:38,14,1,0 -Example1_ref 4463 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:137,67,0,0 0/0:.:53:53:0:0%:39,14,0,0 -Example1_ref 4464 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:135,67,0,0 0/0:.:54:54:0:0%:40,14,0,0 -Example1_ref 4465 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:135,65,0,0 0/0:.:54:54:0:0%:39,15,0,0 -Example1_ref 4466 . C . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:134,64,0,0 0/0:.:54:53:0:0%:38,15,0,0 -Example1_ref 4467 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:137,63,0,0 0/0:.:53:52:0:0%:37,15,0,0 -Example1_ref 4468 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:137,64,0,0 0/0:.:53:53:0:0%:38,15,0,0 -Example1_ref 4469 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:138,64,0,0 0/0:.:54:54:0:0%:39,15,0,0 -Example1_ref 4470 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:132,63,0,0 0/0:.:52:52:0:0%:38,14,0,0 -Example1_ref 4471 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:132,62,0,0 0/0:.:54:54:0:0%:39,15,0,0 -Example1_ref 4472 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:131,60,0,0 0/0:.:53:53:0:0%:38,15,0,0 -Example1_ref 4473 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:132,61,0,0 0/0:.:53:53:0:0%:39,14,0,0 -Example1_ref 4474 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:133,61,0,0 0/0:.:54:54:0:0%:39,15,0,0 -Example1_ref 4475 . G T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=5.9783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:186:2:1.06%:124,62,2,0 0/0:.:55:55:0:0%:39,16,0,0 -Example1_ref 4476 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:128,63,0,0 0/0:.:55:55:0:0%:39,16,0,0 -Example1_ref 4477 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:128,63,0,0 0/0:.:54:54:0:0%:38,16,0,0 -Example1_ref 4478 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:129,66,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 4479 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:132,66,0,0 0/0:.:53:53:0:0%:38,15,0,0 -Example1_ref 4480 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:129,66,0,0 0/0:.:55:55:0:0%:39,16,0,0 -Example1_ref 4481 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:130,70,0,0 0/0:.:54:54:0:0%:38,16,0,0 -Example1_ref 4482 . T C . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=7.8656E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:128,70,0,1 0/0:.:54:54:0:0%:38,16,0,0 -Example1_ref 4483 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:129,69,0,0 0/0:.:55:55:0:0%:39,16,0,0 -Example1_ref 4484 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:126,69,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 4485 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:129,70,0,0 0/0:.:54:54:0:0%:38,16,0,0 -Example1_ref 4486 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:128,71,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 4487 . T G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.9268E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:126,68,0,1 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 4488 . T C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=7.9839E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:128,69,1,0 0/0:.:50:50:0:0%:34,16,0,0 -Example1_ref 4489 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:131,68,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 4490 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:129,71,0,0 0/0:.:51:51:0:0%:35,16,0,0 -Example1_ref 4491 . T C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=7.9681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:128,71,1,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 4492 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:129,72,0,0 0/0:.:51:51:0:0%:35,16,0,0 -Example1_ref 4493 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:132,71,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 4494 . T G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=7.9116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:127,69,1,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 4495 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:124,69,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4496 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:128,71,0,0 0/0:.:52:52:0:0%:36,16,0,0 -Example1_ref 4497 . C . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:127,70,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4498 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:130,70,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4499 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:128,70,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4500 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:132,72,0,0 0/0:.:49:49:0:0%:34,15,0,0 -Example1_ref 4501 . G . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:126,70,0,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 4502 . G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:124,73,0,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 4503 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:122,71,0,0 0/0:.:48:48:0:0%:33,15,0,0 -Example1_ref 4504 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:122,77,0,0 0/0:.:48:48:0:0%:33,15,0,0 -Example1_ref 4505 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:130,74,0,0 0/0:.:49:49:0:0%:35,14,0,0 -Example1_ref 4506 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:125,76,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4507 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:125,77,0,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 4508 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:127,76,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4509 . T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:130,79,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4510 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:128,79,0,0 0/0:.:50:50:0:0%:35,15,0,0 -Example1_ref 4511 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:125,77,0,0 0/0:.:52:52:0:0%:37,15,0,0 -Example1_ref 4512 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:128,78,0,0 0/0:.:52:52:0:0%:37,15,0,0 -Example1_ref 4513 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:127,79,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 4514 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:119,76,0,0 0/0:.:51:51:0:0%:36,15,0,0 -Example1_ref 4515 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:119,77,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 4516 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:124,74,0,0 0/0:.:52:52:0:0%:37,15,0,0 -Example1_ref 4517 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:128,76,0,0 0/0:.:53:53:0:0%:38,15,0,0 -Example1_ref 4518 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:126,77,0,0 0/0:.:53:53:0:0%:38,15,0,0 -Example1_ref 4519 . C . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:124,76,0,0 0/0:.:53:53:0:0%:37,16,0,0 -Example1_ref 4520 . A AG . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.8682E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:123,79,0,1 0/0:.:55:55:0:0%:38,17,0,0 -Example1_ref 4521 . GT G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=2.0956E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:135,80,0,0 0/0:.:57:56:1:1.75%:40,16,0,1 -Example1_ref 4522 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:136,80,0,0 0/0:.:57:56:0:0%:40,16,0,0 -Example1_ref 4523 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:139,77,0,0 0/0:.:56:56:0:0%:40,16,0,0 -Example1_ref 4524 . T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:135,80,0,0 0/0:.:56:56:0:0%:41,15,0,0 -Example1_ref 4525 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:140,80,0,0 0/0:.:58:58:0:0%:41,17,0,0 -Example1_ref 4526 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:137,80,0,0 0/0:.:55:55:0:0%:38,17,0,0 -Example1_ref 4527 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:138,80,0,0 0/0:.:56:56:0:0%:39,17,0,0 -Example1_ref 4528 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:142,81,0,0 0/0:.:59:59:0:0%:42,17,0,0 -Example1_ref 4529 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:0:0%:140,86,0,0 0/0:.:59:59:0:0%:42,17,0,0 -Example1_ref 4530 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:141,85,0,0 0/0:.:60:60:0:0%:42,18,0,0 -Example1_ref 4531 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:0:0%:139,81,0,0 0/0:.:57:57:0:0%:41,16,0,0 -Example1_ref 4532 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:140,91,0,0 0/0:.:60:60:0:0%:41,19,0,0 -Example1_ref 4533 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:139,91,0,0 0/0:.:62:62:0:0%:43,19,0,0 -Example1_ref 4534 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:141,90,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 4535 . G . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:134,91,0,0 0/0:.:62:62:0:0%:43,19,0,0 -Example1_ref 4536 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:139,90,0,0 0/0:.:60:60:0:0%:42,18,0,0 -Example1_ref 4537 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:141,93,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 4538 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:142,93,0,0 0/0:.:61:61:0:0%:42,19,0,0 -Example1_ref 4539 . C . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:143,91,0,0 0/0:.:61:61:0:0%:42,19,0,0 -Example1_ref 4540 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:142,91,0,0 0/0:.:61:61:0:0%:42,19,0,0 -Example1_ref 4541 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:143,91,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 4542 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:144,90,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 4543 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:143,93,0,0 0/0:.:59:59:0:0%:41,18,0,0 -Example1_ref 4544 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:140,92,0,0 0/0:.:62:62:0:0%:43,19,0,0 -Example1_ref 4545 . C . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:146,90,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 4546 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:144,93,0,0 0/0:.:61:61:0:0%:43,18,0,0 -Example1_ref 4547 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:148,92,0,0 0/0:.:63:63:0:0%:46,17,0,0 -Example1_ref 4548 . T . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:152,94,0,0 0/0:.:63:63:0:0%:46,17,0,0 -Example1_ref 4549 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:156,95,0,0 0/0:.:61:61:0:0%:44,17,0,0 -Example1_ref 4550 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:154,92,0,0 0/0:.:62:62:0:0%:46,16,0,0 -Example1_ref 4551 . CA C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=7.9208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:239:1:0.42%:151,88,0,1 0/0:.:63:63:0:0%:46,17,0,0 -Example1_ref 4552 . A G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=2.0861E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:151,88,0,0 0/0:.:63:62:1:1.59%:46,16,0,1 -Example1_ref 4553 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:151,89,0,0 0/0:.:63:63:0:0%:46,17,0,0 -Example1_ref 4554 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:151,88,0,0 0/0:.:63:63:0:0%:46,17,0,0 -Example1_ref 4555 . A G . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=7.9479E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:154,89,0,1 0/0:.:63:63:0:0%:46,17,0,0 -Example1_ref 4556 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:152,89,0,0 0/0:.:64:64:0:0%:47,17,0,0 -Example1_ref 4557 . C . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:156,91,0,0 0/0:.:64:64:0:0%:46,18,0,0 -Example1_ref 4558 . A . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:156,89,0,0 0/0:.:62:62:0:0%:45,17,0,0 -Example1_ref 4559 . C G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=2.0667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:151,87,0,0 0/0:.:62:61:1:1.61%:43,18,1,0 -Example1_ref 4560 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:154,90,0,0 0/0:.:64:64:0:0%:45,19,0,0 -Example1_ref 4561 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:155,91,0,0 0/0:.:64:64:0:0%:45,19,0,0 -Example1_ref 4562 . G . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:151,93,0,0 0/0:.:63:63:0:0%:44,19,0,0 -Example1_ref 4563 . C T . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=2.0388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:155,91,0,0 0/0:.:63:62:1:1.59%:45,17,1,0 -Example1_ref 4564 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:155,93,0,0 0/0:.:65:65:0:0%:46,19,0,0 -Example1_ref 4565 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:156,91,0,0 0/0:.:64:64:0:0%:44,20,0,0 -Example1_ref 4566 . G . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:158,90,0,0 0/0:.:67:67:0:0%:47,20,0,0 -Example1_ref 4567 . T . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:158,90,0,0 0/0:.:67:67:0:0%:47,20,0,0 -Example1_ref 4568 . C . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:156,92,0,0 0/0:.:67:67:0:0%:47,20,0,0 -Example1_ref 4569 . A G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=6.2953E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:252:2:0.79%:160,92,2,0 0/0:.:66:66:0:0%:46,20,0,0 -Example1_ref 4570 . G . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:163,90,0,0 0/0:.:66:66:0:0%:46,20,0,0 -Example1_ref 4571 . C . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:163,95,0,0 0/0:.:67:67:0:0%:47,20,0,0 -Example1_ref 4572 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:163,98,0,0 0/0:.:67:67:0:0%:47,20,0,0 -Example1_ref 4573 . A . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:165,98,0,0 0/0:.:68:68:0:0%:47,21,0,0 -Example1_ref 4574 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:174,96,0,0 0/0:.:70:70:0:0%:49,21,0,0 -Example1_ref 4575 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:175,97,0,0 0/0:.:70:70:0:0%:49,21,0,0 -Example1_ref 4576 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:181,101,0,0 0/0:.:72:72:0:0%:51,21,0,0 -Example1_ref 4577 . T . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:180,98,0,0 0/0:.:71:71:0:0%:50,21,0,0 -Example1_ref 4578 . T . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:180,100,0,0 0/0:.:69:69:0:0%:50,19,0,0 -Example1_ref 4579 . C A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.9942E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:176,98,0,1 0/0:.:69:69:0:0%:50,19,0,0 -Example1_ref 4580 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:176,97,0,0 0/0:.:69:69:0:0%:50,19,0,0 -Example1_ref 4581 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:0:0%:177,99,0,0 0/0:.:70:70:0:0%:50,20,0,0 -Example1_ref 4582 . G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:178,101,0,0 0/0:.:69:69:0:0%:49,20,0,0 -Example1_ref 4583 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:177,100,0,0 0/0:.:71:71:0:0%:51,20,0,0 -Example1_ref 4584 . G . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:177,98,0,0 0/0:.:72:72:0:0%:51,21,0,0 -Example1_ref 4585 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:176,97,0,0 0/0:.:69:69:0:0%:50,19,0,0 -Example1_ref 4586 . G . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:171,96,0,0 0/0:.:70:70:0:0%:50,20,0,0 -Example1_ref 4587 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:174,93,0,0 0/0:.:74:74:0:0%:54,20,0,0 -Example1_ref 4588 . G . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:176,96,0,0 0/0:.:73:73:0:0%:52,21,0,0 -Example1_ref 4589 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:173,97,0,0 0/0:.:71:71:0:0%:51,20,0,0 -Example1_ref 4590 . T . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:174,93,0,0 0/0:.:72:72:0:0%:51,21,0,0 -Example1_ref 4591 . T A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=3.7601E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:180,94,1,0 0/0:.:73:72:1:1.37%:51,21,1,0 -Example1_ref 4592 . T . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:181,108,0,0 0/0:.:76:76:0:0%:53,23,0,0 -Example1_ref 4593 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:183,109,0,0 0/0:.:76:76:0:0%:53,23,0,0 -Example1_ref 4594 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:184,109,0,0 0/0:.:77:77:0:0%:54,23,0,0 -Example1_ref 4595 . T . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:184,105,0,0 0/0:.:78:78:0:0%:55,23,0,0 -Example1_ref 4596 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:183,106,0,0 0/0:.:76:76:0:0%:53,23,0,0 -Example1_ref 4597 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:182,107,0,0 0/0:.:75:75:0:0%:52,23,0,0 -Example1_ref 4598 . C A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.9032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:188,105,0,1 0/0:.:78:78:0:0%:54,24,0,0 -Example1_ref 4599 . C A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=8.0052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:195,113,1,0 0/0:.:77:77:0:0%:53,24,0,0 -Example1_ref 4600 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:191,113,0,0 0/0:.:76:76:0:0%:52,24,0,0 -Example1_ref 4601 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:192,111,0,0 0/0:.:75:75:0:0%:51,24,0,0 -Example1_ref 4602 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:193,115,0,0 0/0:.:76:76:0:0%:52,24,0,0 -Example1_ref 4603 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:194,115,0,0 0/0:.:77:77:0:0%:53,24,0,0 -Example1_ref 4604 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:193,117,0,0 0/0:.:77:77:0:0%:53,24,0,0 -Example1_ref 4605 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:195,114,0,0 0/0:.:77:77:0:0%:53,24,0,0 -Example1_ref 4606 . G . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:190,118,0,0 0/0:.:77:77:0:0%:53,24,0,0 -Example1_ref 4607 . G A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=7.9793E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:187,120,0,1 0/0:.:78:78:0:0%:52,26,0,0 -Example1_ref 4608 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:188,118,0,0 0/0:.:80:80:0:0%:54,26,0,0 -Example1_ref 4609 . C A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=6.2008E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:306:2:0.65%:198,108,0,2 0/0:.:83:83:0:0%:57,26,0,0 -Example1_ref 4610 . C . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:195,118,0,0 0/0:.:82:82:0:0%:56,26,0,0 -Example1_ref 4611 . T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:195,114,0,0 0/0:.:82:82:0:0%:56,26,0,0 -Example1_ref 4612 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:311:0:0%:195,116,0,0 0/0:.:81:81:0:0%:56,25,0,0 -Example1_ref 4613 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:194,114,0,0 0/0:.:81:81:0:0%:56,25,0,0 -Example1_ref 4614 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:196,114,0,0 0/0:.:83:83:0:0%:58,25,0,0 -Example1_ref 4615 . T . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:196,111,0,0 0/0:.:82:82:0:0%:58,24,0,0 -Example1_ref 4616 . C A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=7.8553E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:192,111,0,1 0/0:.:83:83:0:0%:58,25,0,0 -Example1_ref 4617 . C . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:191,114,0,0 0/0:.:82:82:0:0%:57,25,0,0 -Example1_ref 4618 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:187,117,0,0 0/0:.:80:80:0:0%:56,24,0,0 -Example1_ref 4619 . C . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:188,113,0,0 0/0:.:82:82:0:0%:57,25,0,0 -Example1_ref 4620 . A G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=7.9E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:193,122,0,1 0/0:.:84:84:0:0%:57,27,0,0 -Example1_ref 4621 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:193,121,0,0 0/0:.:84:84:0:0%:57,27,0,0 -Example1_ref 4622 . C . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:190,122,0,0 0/0:.:83:83:0:0%:56,27,0,0 -Example1_ref 4623 . TC T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.9293E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:192,121,1,0 0/0:.:82:82:0:0%:56,26,0,0 -Example1_ref 4624 . C . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:190,125,0,0 0/0:.:84:84:0:0%:57,27,0,0 -Example1_ref 4625 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:191,125,0,0 0/0:.:85:85:0:0%:59,26,0,0 -Example1_ref 4626 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:192,126,0,0 0/0:.:84:84:0:0%:58,26,0,0 -Example1_ref 4627 . T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:196,127,0,0 0/0:.:86:86:0:0%:60,26,0,0 -Example1_ref 4628 . C . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:194,123,0,0 0/0:.:85:85:0:0%:59,26,0,0 -Example1_ref 4629 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:194,121,0,0 0/0:.:83:83:0:0%:57,26,0,0 -Example1_ref 4630 . A T . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=7.9093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:190,123,1,0 0/0:.:83:83:0:0%:57,26,0,0 -Example1_ref 4631 . G . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:186,122,0,0 0/0:.:83:83:0:0%:58,25,0,0 -Example1_ref 4632 . T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:191,119,0,0 0/0:.:81:81:0:0%:55,26,0,0 -Example1_ref 4633 . T G . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=7.9177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:188,119,1,0 0/0:.:81:81:0:0%:55,26,0,0 -Example1_ref 4634 . A ACTG . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=7.8701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:182,120,1,0 0/0:.:82:82:0:0%:56,26,0,0 -Example1_ref 4635 . T . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:186,116,0,0 0/0:.:83:83:0:0%:56,27,0,0 -Example1_ref 4636 . C . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:176,118,0,0 0/0:.:83:83:0:0%:56,27,0,0 -Example1_ref 4637 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:177,119,0,0 0/0:.:82:82:0:0%:56,26,0,0 -Example1_ref 4638 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:171,117,0,0 0/0:.:80:80:0:0%:53,27,0,0 -Example1_ref 4639 . G . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:163,115,0,0 0/0:.:75:75:0:0%:50,25,0,0 -Example1_ref 4640 . G . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:161,116,0,0 0/0:.:75:75:0:0%:48,27,0,0 -Example1_ref 4641 . CT C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=6.1395E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:270:2:0.74%:151,119,2,0 0/0:.:75:75:0:0%:49,26,0,0 -Example1_ref 4642 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:159,116,0,0 0/0:.:75:75:0:0%:48,27,0,0 -Example1_ref 4643 . T C . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=7.8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:272:1:0.37%:155,117,0,1 0/0:.:77:77:0:0%:50,27,0,0 -Example1_ref 4644 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:166,118,0,0 0/0:.:80:80:0:0%:53,27,0,0 -Example1_ref 4645 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:167,121,0,0 0/0:.:79:79:0:0%:52,27,0,0 -Example1_ref 4646 . T . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:171,120,0,0 0/0:.:80:80:0:0%:53,27,0,0 -Example1_ref 4647 . C . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:170,119,0,0 0/0:.:80:80:0:0%:52,28,0,0 -Example1_ref 4648 . A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:161,120,0,0 0/0:.:80:80:0:0%:52,28,0,0 -Example1_ref 4649 . G . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:81:81:0:0%:53,28,0,0 -Example1_ref 4650 . T . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:171,122,0,0 0/0:.:82:81:0:0%:54,27,0,0 -Example1_ref 4651 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:167,119,0,0 0/0:.:82:81:0:0%:53,28,0,0 -Example1_ref 4652 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:165,122,0,0 0/0:.:81:81:0:0%:52,29,0,0 -Example1_ref 4653 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:164,116,0,0 0/0:.:82:82:0:0%:53,29,0,0 -Example1_ref 4654 . G . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:167,117,0,0 0/0:.:81:81:0:0%:52,29,0,0 -Example1_ref 4655 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:168,118,0,0 0/0:.:81:81:0:0%:53,28,0,0 -Example1_ref 4656 . T C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=2.2826E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:170,114,0,0 0/0:.:84:83:1:1.19%:56,27,0,1 -Example1_ref 4657 . C A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=2.3035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:170,114,0,0 0/0:.:85:84:1:1.18%:57,27,0,1 -Example1_ref 4658 . A G . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=2.2667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:171,119,0,0 0/0:.:85:84:1:1.18%:57,27,0,1 -Example1_ref 4659 . C T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=7.7394E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:176,114,1,0 0/0:.:85:85:0:0%:57,28,0,0 -Example1_ref 4660 . A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:173,120,0,0 0/0:.:84:84:0:0%:56,28,0,0 -Example1_ref 4661 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:173,119,0,0 0/0:.:82:82:0:0%:54,28,0,0 -Example1_ref 4662 . G . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:176,120,0,0 0/0:.:85:85:0:0%:57,28,0,0 -Example1_ref 4663 . A C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.7105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:175,117,1,0 0/0:.:87:87:0:0%:57,30,0,0 -Example1_ref 4664 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:180,118,0,0 0/0:.:86:86:0:0%:57,29,0,0 -Example1_ref 4665 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:180,117,0,0 0/0:.:87:87:0:0%:58,29,0,0 -Example1_ref 4666 . A T . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=5.9683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:177,117,2,0 0/0:.:87:87:0:0%:57,30,0,0 -Example1_ref 4667 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:178,119,0,0 0/0:.:87:87:0:0%:58,29,0,0 -Example1_ref 4668 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:176,108,0,0 0/0:.:85:85:0:0%:57,28,0,0 -Example1_ref 4669 . T A . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=7.7165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:179,114,1,0 0/0:.:87:87:0:0%:57,30,0,0 -Example1_ref 4670 . G T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=2.2427E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:175,119,0,0 0/0:.:86:84:1:1.18%:55,29,1,0 -Example1_ref 4671 . C T . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=5.9464E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:2:0.67%:180,115,2,0 0/0:.:88:88:0:0%:58,30,0,0 -Example1_ref 4672 . A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:183,117,0,0 0/0:.:91:90:0:0%:59,31,0,0 -Example1_ref 4673 . A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:182,117,0,0 0/0:.:92:92:0:0%:60,32,0,0 -Example1_ref 4674 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:182,115,0,0 0/0:.:91:91:0:0%:61,30,0,0 -Example1_ref 4675 . T . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:180,114,0,0 0/0:.:91:91:0:0%:60,31,0,0 -Example1_ref 4676 . T C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=7.6804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:180,117,0,1 0/0:.:90:90:0:0%:59,31,0,0 -Example1_ref 4677 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:179,127,0,0 0/0:.:88:88:0:0%:58,30,0,0 -Example1_ref 4678 . C . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:180,125,0,0 0/0:.:90:90:0:0%:59,31,0,0 -Example1_ref 4679 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:177,126,0,0 0/0:.:89:89:0:0%:58,31,0,0 -Example1_ref 4680 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:178,125,0,0 0/0:.:90:90:0:0%:59,31,0,0 -Example1_ref 4681 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:181,126,0,0 0/0:.:91:91:0:0%:60,31,0,0 -Example1_ref 4682 . C A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=7.7215E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:181,123,0,1 0/0:.:90:90:0:0%:59,31,0,0 -Example1_ref 4683 . C . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:178,122,0,0 0/0:.:90:90:0:0%:60,30,0,0 -Example1_ref 4684 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:180,123,0,0 0/0:.:91:91:0:0%:62,29,0,0 -Example1_ref 4685 . T A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.7136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:1:0.33%:181,125,0,1 0/0:.:91:91:0:0%:62,29,0,0 -Example1_ref 4686 . C . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:182,128,0,0 0/0:.:95:95:0:0%:63,32,0,0 -Example1_ref 4687 . T G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.6238E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:180,127,0,1 0/0:.:96:96:0:0%:64,32,0,0 -Example1_ref 4688 . T A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=7.6441E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:178,126,0,1 0/0:.:94:94:0:0%:62,32,0,0 -Example1_ref 4689 . T . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:183,128,0,0 0/0:.:96:96:0:0%:64,32,0,0 -Example1_ref 4690 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:182,130,0,0 0/0:.:97:97:0:0%:65,32,0,0 -Example1_ref 4691 . C . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:182,128,0,0 0/0:.:93:93:0:0%:61,32,0,0 -Example1_ref 4692 . C . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:181,123,0,0 0/0:.:93:93:0:0%:61,32,0,0 -Example1_ref 4693 . T . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:182,123,0,0 0/0:.:94:94:0:0%:62,32,0,0 -Example1_ref 4694 . G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:182,125,0,0 0/0:.:95:95:0:0%:63,32,0,0 -Example1_ref 4695 . G T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=5.5255E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:2:0.67%:168,127,2,0 0/0:.:91:90:1:1.1%:59,31,1,0 -Example1_ref 4696 . C T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.5879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:177,124,1,0 0/0:.:96:96:0:0%:64,32,0,0 -Example1_ref 4697 . G . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:175,131,0,0 0/0:.:91:91:0:0%:59,32,0,0 -Example1_ref 4698 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:171,131,0,0 0/0:.:93:93:0:0%:61,32,0,0 -Example1_ref 4699 . G . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:180,128,0,0 0/0:.:95:95:0:0%:62,33,0,0 -Example1_ref 4700 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:182,128,0,0 0/0:.:101:101:0:0%:65,36,0,0 -Example1_ref 4701 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:183,128,0,0 0/0:.:100:100:0:0%:64,36,0,0 -Example1_ref 4702 . C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:180,129,0,0 0/0:.:95:95:0:0%:61,34,0,0 -Example1_ref 4703 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:179,130,0,0 0/0:.:97:97:0:0%:62,35,0,0 -Example1_ref 4704 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:177,131,0,0 0/0:.:96:96:0:0%:61,35,0,0 -Example1_ref 4705 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:177,132,0,0 0/0:.:99:99:0:0%:64,35,0,0 -Example1_ref 4706 . T G . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=5.7582E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:310:2:0.64%:182,128,0,2 0/0:.:99:99:0:0%:64,35,0,0 -Example1_ref 4707 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:181,137,0,0 0/0:.:99:99:0:0%:64,35,0,0 -Example1_ref 4708 . C A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.6399E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:313:1:0.32%:182,131,0,1 0/0:.:97:97:0:0%:65,32,0,0 -Example1_ref 4709 . T A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.5854E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:182,128,0,1 0/0:.:99:99:0:0%:65,34,0,0 -Example1_ref 4710 . ATC A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=5.5791E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:322:2:0.62%:194,128,1,1 0/0:.:102:100:1:0.99%:66,34,1,0 -Example1_ref 4711 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:187,125,0,0 0/0:.:102:102:0:0%:68,34,0,0 -Example1_ref 4712 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:191,126,0,0 0/0:.:107:107:0:0%:73,34,0,0 -Example1_ref 4713 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:188,129,0,0 0/0:.:103:103:0:0%:70,33,0,0 -Example1_ref 4714 . T . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:192,131,0,0 0/0:.:104:104:0:0%:71,33,0,0 -Example1_ref 4715 . A . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:0:0%:190,134,0,0 0/0:.:106:106:0:0%:73,33,0,0 -Example1_ref 4716 . A . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:192,134,0,0 0/0:.:107:107:0:0%:73,34,0,0 -Example1_ref 4717 . C CCT . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=2.4413E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:189,133,0,0 0/0:.:104:103:1:0.96%:70,33,1,0 -Example1_ref 4718 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:185,136,0,0 0/0:.:105:104:0:0%:70,34,0,0 -Example1_ref 4719 . T C . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=4.334E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:186,124,1,0 0/0:.:102:101:1:0.98%:71,30,1,0 -Example1_ref 4720 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:184,126,0,0 0/0:.:102:102:0:0%:71,31,0,0 -Example1_ref 4721 . A C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=2.4755E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:183,124,0,0 0/0:.:101:100:1:0.99%:70,30,1,0 -Example1_ref 4722 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:188,124,0,0 0/0:.:98:98:0:0%:71,27,0,0 -Example1_ref 4723 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:186,126,0,0 0/0:.:100:100:0:0%:70,30,0,0 -Example1_ref 4724 . G T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.5369E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:180,125,1,0 0/0:.:100:100:0:0%:70,30,0,0 -Example1_ref 4725 . C . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:182,127,0,0 0/0:.:100:100:0:0%:69,31,0,0 -Example1_ref 4726 . A G . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=7.5306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:182,125,1,0 0/0:.:101:101:0:0%:70,31,0,0 -Example1_ref 4727 . A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:178,125,0,0 0/0:.:102:102:0:0%:71,31,0,0 -Example1_ref 4728 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:169,124,0,0 0/0:.:102:102:0:0%:71,31,0,0 -Example1_ref 4729 . A ACTGTCT . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=2.601E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:168,125,0,0 0/0:.:103:102:1:0.97%:69,33,1,0 -Example1_ref 4730 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:171,123,0,0 0/0:.:102:102:0:0%:69,33,0,0 -Example1_ref 4731 . G GCTGTCTC . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.3858E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:169,121,1,0 0/0:.:103:103:0:0%:70,33,0,0 -Example1_ref 4732 . A . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:160,125,0,0 0/0:.:100:100:0:0%:67,33,0,0 -Example1_ref 4733 . G . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:169,121,0,0 0/0:.:105:105:0:0%:72,33,0,0 -Example1_ref 4734 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:175,120,0,0 0/0:.:103:103:0:0%:71,32,0,0 -Example1_ref 4735 . T . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:172,118,0,0 0/0:.:103:103:0:0%:71,32,0,0 -Example1_ref 4736 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:170,118,0,0 0/0:.:98:98:0:0%:69,29,0,0 -Example1_ref 4737 . G T . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=7.4278E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:282:1:0.35%:166,116,1,0 0/0:.:98:98:0:0%:68,30,0,0 -Example1_ref 4738 . G T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=2.5916E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:165,118,0,0 0/0:.:99:98:1:1.01%:67,31,1,0 -Example1_ref 4739 . A ACTGTC . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=7.3766E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:161,122,1,0 0/0:.:101:101:0:0%:68,33,0,0 -Example1_ref 4740 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:171,120,0,0 0/0:.:105:105:0:0%:72,33,0,0 -Example1_ref 4741 . A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:172,120,0,0 0/0:.:105:105:0:0%:72,33,0,0 -Example1_ref 4742 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:173,121,0,0 0/0:.:106:106:0:0%:73,33,0,0 -Example1_ref 4743 . T . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:175,121,0,0 0/0:.:109:109:0:0%:75,34,0,0 -Example1_ref 4744 . T . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:172,124,0,0 0/0:.:107:107:0:0%:73,34,0,0 -Example1_ref 4745 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:176,127,0,0 0/0:.:111:111:0:0%:76,35,0,0 -Example1_ref 4746 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:173,127,0,0 0/0:.:107:107:0:0%:73,34,0,0 -Example1_ref 4747 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:174,128,0,0 0/0:.:110:110:0:0%:75,35,0,0 -Example1_ref 4748 . C CCTGTCTCT . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=7.2705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:171,121,1,0 0/0:.:110:110:0:0%:76,34,0,0 -Example1_ref 4749 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:174,125,0,0 0/0:.:109:109:0:0%:76,33,0,0 -Example1_ref 4750 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:170,128,0,0 0/0:.:108:108:0:0%:75,33,0,0 -Example1_ref 4751 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:173,124,0,0 0/0:.:111:111:0:0%:76,35,0,0 -Example1_ref 4752 . G . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:171,125,0,0 0/0:.:113:113:0:0%:76,37,0,0 -Example1_ref 4753 . G T . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=4.673E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:1:0.34%:166,128,1,0 0/0:.:109:108:1:0.92%:73,35,1,0 -Example1_ref 4754 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:173,132,0,0 0/0:.:111:111:0:0%:75,36,0,0 -Example1_ref 4755 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:172,136,0,0 0/0:.:112:112:0:0%:76,36,0,0 -Example1_ref 4756 . TTAA T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=7.3206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:172,133,1,0 0/0:.:112:112:0:0%:75,37,0,0 -Example1_ref 4757 . T TTTG . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=7.2771E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:169,132,1,0 0/0:.:113:113:0:0%:75,38,0,0 -Example1_ref 4758 . A G . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=2.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:0:0%:167,137,0,0 0/0:.:114:113:1:0.88%:74,39,1,0 -Example1_ref 4759 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:165,138,0,0 0/0:.:114:114:0:0%:75,39,0,0 -Example1_ref 4760 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:164,135,0,0 0/0:.:113:113:0:0%:75,38,0,0 -Example1_ref 4761 . A T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=4.7635E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:163,135,1,0 0/0:.:114:113:1:0.88%:74,39,1,0 -Example1_ref 4762 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:0:0%:162,136,0,0 0/0:.:113:113:0:0%:74,39,0,0 -Example1_ref 4763 . T . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:173,130,0,0 0/0:.:112:112:0:0%:76,36,0,0 -Example1_ref 4764 . C CT . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=2.7098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:169,135,0,0 0/0:.:113:112:1:0.88%:74,38,1,0 -Example1_ref 4765 . T TC . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=4.6577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:168,133,1,0 0/0:.:111:110:1:0.9%:72,38,1,0 -Example1_ref 4766 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:163,137,0,0 0/0:.:108:108:0:0%:70,38,0,0 -Example1_ref 4767 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:164,132,0,0 0/0:.:106:106:0:0%:68,38,0,0 -Example1_ref 4768 . A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:165,139,0,0 0/0:.:111:111:0:0%:72,39,0,0 -Example1_ref 4769 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:165,133,0,0 0/0:.:110:110:0:0%:73,37,0,0 -Example1_ref 4770 . T C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.2947E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:162,139,1,0 0/0:.:112:112:0:0%:72,40,0,0 -Example1_ref 4771 . T TC . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=2.7184E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:162,138,0,0 0/0:.:112:111:1:0.89%:73,38,1,0 -Example1_ref 4772 . T C . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=7.2794E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:158,138,1,0 0/0:.:112:111:0:0%:73,38,0,0 -Example1_ref 4773 . G T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=7.1934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:167,137,1,0 0/0:.:119:119:0:0%:78,41,0,0 -Example1_ref 4774 . A G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=7.1973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:175,145,1,0 0/0:.:125:125:0:0%:82,43,0,0 -Example1_ref 4775 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:173,136,0,0 0/0:.:123:123:0:0%:81,42,0,0 -Example1_ref 4776 . C A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=7.1754E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:1:0.32%:176,138,0,1 0/0:.:124:124:0:0%:83,41,0,0 -Example1_ref 4777 . T . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:174,141,0,0 0/0:.:124:124:0:0%:82,42,0,0 -Example1_ref 4778 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:337:0:0%:192,145,0,0 0/0:.:136:136:0:0%:92,44,0,0 -Example1_ref 4779 . G . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:196,144,0,0 0/0:.:137:137:0:0%:94,43,0,0 -Example1_ref 4780 . A T . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=7.1399E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:341:1:0.29%:197,144,1,0 0/0:.:137:137:0:0%:94,43,0,0 -Example1_ref 4781 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:198,144,0,0 0/0:.:136:136:0:0%:92,44,0,0 -Example1_ref 4782 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:194,135,0,0 0/0:.:137:137:0:0%:93,44,0,0 -Example1_ref 4783 . T . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:195,131,0,0 0/0:.:135:135:0:0%:94,41,0,0 -Example1_ref 4784 . A G . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=7.0576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:196,134,0,1 0/0:.:138:138:0:0%:94,44,0,0 -Example1_ref 4785 . C A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=4.9769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:197,131,1,0 0/0:.:135:134:1:0.74%:93,41,0,1 -Example1_ref 4786 . C . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:195,129,0,0 0/0:.:133:133:0:0%:92,41,0,0 -Example1_ref 4787 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:198,126,0,0 0/0:.:136:136:0:0%:95,41,0,0 -Example1_ref 4788 . A . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:201,129,0,0 0/0:.:135:135:0:0%:94,41,0,0 -Example1_ref 4789 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:198,125,0,0 0/0:.:131:131:0:0%:93,38,0,0 -Example1_ref 4790 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:199,129,0,0 0/0:.:135:135:0:0%:94,41,0,0 -Example1_ref 4791 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:200,129,0,0 0/0:.:137:137:0:0%:94,43,0,0 -Example1_ref 4792 . A T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=7.1304E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:201,126,0,1 0/0:.:132:132:0:0%:90,42,0,0 -Example1_ref 4793 . G GC . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=7.1116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:197,127,1,0 0/0:.:132:132:0:0%:89,43,0,0 -Example1_ref 4794 . C A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=2.8319E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:202,122,0,0 0/0:.:129:127:1:0.78%:87,40,0,1 -Example1_ref 4795 . CA C . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.1491E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:201,124,1,0 0/0:.:130:130:0:0%:88,42,0,0 -Example1_ref 4796 . A . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:0:0%:203,125,0,0 0/0:.:132:131:0:0%:89,42,0,0 -Example1_ref 4797 . G A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=7.1116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:199,125,0,1 0/0:.:132:132:0:0%:91,41,0,0 -Example1_ref 4798 . A . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:199,126,0,0 0/0:.:134:134:0:0%:91,43,0,0 -Example1_ref 4799 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:195,125,0,0 0/0:.:134:134:0:0%:90,44,0,0 -Example1_ref 4800 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:199,124,0,0 0/0:.:137:137:0:0%:94,43,0,0 -Example1_ref 4801 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:204,125,0,0 0/0:.:137:137:0:0%:93,44,0,0 -Example1_ref 4802 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:205,126,0,0 0/0:.:139:139:0:0%:96,43,0,0 -Example1_ref 4803 . A ATTTTG . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.0042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:204,127,1,0 0/0:.:142:142:0:0%:98,44,0,0 -Example1_ref 4804 . T . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:207,126,0,0 0/0:.:138:138:0:0%:94,44,0,0 -Example1_ref 4805 . A G . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=7.0789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:206,125,0,1 0/0:.:137:137:0:0%:93,44,0,0 -Example1_ref 4806 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:206,126,0,0 0/0:.:138:138:0:0%:94,44,0,0 -Example1_ref 4807 . G . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:205,124,0,0 0/0:.:136:136:0:0%:93,43,0,0 -Example1_ref 4808 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:202,120,0,0 0/0:.:135:135:0:0%:93,42,0,0 -Example1_ref 4809 . G . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:200,121,0,0 0/0:.:136:136:0:0%:93,43,0,0 -Example1_ref 4810 . A ATCTG . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=6.9783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:199,121,1,0 0/0:.:139:139:0:0%:93,46,0,0 -Example1_ref 4811 . T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:202,118,0,0 0/0:.:139:139:0:0%:94,45,0,0 -Example1_ref 4812 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:196,119,0,0 0/0:.:139:139:0:0%:94,45,0,0 -Example1_ref 4813 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:210,121,0,0 0/0:.:137:137:0:0%:94,43,0,0 -Example1_ref 4814 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:209,116,0,0 0/0:.:137:137:0:0%:94,43,0,0 -Example1_ref 4815 . C . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:210,121,0,0 0/0:.:140:140:0:0%:95,45,0,0 -Example1_ref 4816 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:209,123,0,0 0/0:.:136:136:0:0%:92,44,0,0 -Example1_ref 4817 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:210,122,0,0 0/0:.:138:138:0:0%:94,44,0,0 -Example1_ref 4818 . A T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=7.094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:209,122,0,1 0/0:.:136:136:0:0%:91,45,0,0 -Example1_ref 4819 . A . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:207,121,0,0 0/0:.:139:139:0:0%:92,47,0,0 -Example1_ref 4820 . A . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:209,125,0,0 0/0:.:137:137:0:0%:92,45,0,0 -Example1_ref 4821 . C . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:206,122,0,0 0/0:.:139:138:0:0%:91,47,0,0 -Example1_ref 4822 . T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:209,117,0,0 0/0:.:133:133:0:0%:91,42,0,0 -Example1_ref 4823 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:201,123,0,0 0/0:.:138:138:0:0%:93,45,0,0 -Example1_ref 4824 . A . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:207,130,0,0 0/0:.:140:140:0:0%:92,48,0,0 -Example1_ref 4825 . G T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=7.1245E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:203,128,1,0 0/0:.:134:134:0:0%:88,46,0,0 -Example1_ref 4826 . G T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=2.8603E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:197,130,0,0 0/0:.:131:130:1:0.76%:83,47,1,0 -Example1_ref 4827 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:206,133,0,0 0/0:.:145:145:0:0%:92,53,0,0 -Example1_ref 4828 . C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:0:0%:213,125,0,0 0/0:.:143:143:0:0%:94,49,0,0 -Example1_ref 4829 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:342:0:0%:210,132,0,0 0/0:.:146:146:0:0%:92,54,0,0 -Example1_ref 4830 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:211,131,0,0 0/0:.:148:148:0:0%:96,52,0,0 -Example1_ref 4831 . A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:212,138,0,0 0/0:.:153:153:0:0%:97,56,0,0 -Example1_ref 4832 . A G . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=6.9565E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:213,138,0,1 0/0:.:154:154:0:0%:98,56,0,0 -Example1_ref 4833 . GA G . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=3.479E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:337:3:0.88%:206,131,1,2 0/0:.:143:143:0:0%:89,54,0,0 -Example1_ref 4834 . A . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:202,136,0,0 0/0:.:149:149:0:0%:94,55,0,0 -Example1_ref 4835 . A . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:206,140,0,0 0/0:.:147:147:0:0%:92,55,0,0 -Example1_ref 4836 . G GC . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.0417E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:337:1:0.3%:201,136,1,0 0/0:.:142:142:0:0%:88,54,0,0 -Example1_ref 4837 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:204,133,0,0 0/0:.:145:145:0:0%:91,54,0,0 -Example1_ref 4838 . C . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:199,133,0,0 0/0:.:142:142:0:0%:90,52,0,0 -Example1_ref 4839 . A G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=6.9371E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:341:1:0.29%:198,143,1,0 0/0:.:151:151:0:0%:91,60,0,0 -Example1_ref 4840 . A . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:199,148,0,0 0/0:.:154:154:0:0%:94,60,0,0 -Example1_ref 4841 . C . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:201,146,0,0 0/0:.:155:155:0:0%:96,59,0,0 -Example1_ref 4842 . A AG . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=6.8836E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:202,146,0,1 0/0:.:158:158:0:0%:96,62,0,0 -Example1_ref 4843 . C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:199,149,0,0 0/0:.:156:156:0:0%:96,60,0,0 -Example1_ref 4844 . T . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:195,151,0,0 0/0:.:157:157:0:0%:95,62,0,0 -Example1_ref 4845 . A . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:202,154,0,0 0/0:.:161:161:0:0%:96,65,0,0 -Example1_ref 4846 . A . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:201,154,0,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 4847 . C . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:199,153,0,0 0/0:.:161:161:0:0%:95,66,0,0 -Example1_ref 4848 . A G . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=6.8701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:197,151,1,0 0/0:.:159:159:0:0%:94,65,0,0 -Example1_ref 4849 . A . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:197,148,0,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 4850 . C . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:198,145,0,0 0/0:.:159:159:0:0%:95,64,0,0 -Example1_ref 4851 . C . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:199,150,0,0 0/0:.:152:152:0:0%:91,61,0,0 -Example1_ref 4852 . G . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:199,149,0,0 0/0:.:153:153:0:0%:90,63,0,0 -Example1_ref 4853 . T C . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=6.9796E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:341:1:0.29%:198,143,1,0 0/0:.:148:148:0:0%:86,62,0,0 -Example1_ref 4854 . C A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=6.9421E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:190,145,1,0 0/0:.:148:148:0:0%:84,64,0,0 -Example1_ref 4855 . A ACTGTCTC . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=6.8811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:352:1:0.28%:199,153,1,0 0/0:.:160:160:0:0%:93,67,0,0 -Example1_ref 4856 . G T . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=6.8714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:204,153,1,0 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 4857 . T G . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=6.8714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:204,153,0,1 0/0:.:163:163:0:0%:98,65,0,0 -Example1_ref 4858 . A G . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=6.9145E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:371:1:0.27%:217,154,1,0 0/0:.:166:166:0:0%:99,67,0,0 -Example1_ref 4859 . G . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:214,155,0,0 0/0:.:168:168:0:0%:100,68,0,0 -Example1_ref 4860 . T . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:219,147,0,0 0/0:.:171:171:0:0%:104,67,0,0 -Example1_ref 4861 . C T . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=6.8927E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:217,148,1,0 0/0:.:165:165:0:0%:97,68,0,0 -Example1_ref 4862 . A G . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=6.8877E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:373:1:0.27%:220,153,0,1 0/0:.:169:169:0:0%:101,68,0,0 -Example1_ref 4863 . T . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:220,150,0,0 0/0:.:170:170:0:0%:102,68,0,0 -Example1_ref 4864 . A . PASS DP=545;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:221,154,0,0 0/0:.:170:170:0:0%:101,69,0,0 -Example1_ref 4865 . C . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:223,144,0,0 0/0:.:164:164:0:0%:99,65,0,0 -Example1_ref 4866 . C . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:215,147,0,0 0/0:.:169:169:0:0%:101,68,0,0 -Example1_ref 4867 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:221,153,0,0 0/0:.:168:168:0:0%:101,67,0,0 -Example1_ref 4868 . G T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=3.0712E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:218,152,0,0 0/0:.:164:163:1:0.61%:94,69,1,0 -Example1_ref 4869 . T A . PASS DP=527;SS=0;SSC=0;GPV=1E0;SPV=6.907E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:363:1:0.27%:219,144,0,1 0/0:.:163:163:0:0%:97,66,0,0 -Example1_ref 4870 . C . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:220,149,0,0 0/0:.:166:166:0:0%:102,64,0,0 -Example1_ref 4871 . G T . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=6.9925E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:371:1:0.27%:215,156,1,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 4872 . G A . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=6.9088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:216,154,0,1 0/0:.:166:166:0:0%:97,69,0,0 -Example1_ref 4873 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:224,160,0,0 0/0:.:166:166:0:0%:97,69,0,0 -Example1_ref 4874 . A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:226,159,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 4875 . C T . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=5.117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:373:1:0.27%:221,152,0,1 0/0:.:161:160:1:0.62%:96,64,1,0 -Example1_ref 4876 . A G . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=6.9455E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:381:1:0.26%:222,159,1,0 0/0:.:168:168:0:0%:100,68,0,0 -Example1_ref 4877 . A T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=6.9853E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:1:0.26%:219,160,1,0 0/0:.:164:164:0:0%:95,69,0,0 -Example1_ref 4878 . G A . PASS DP=549;SS=0;SSC=0;GPV=1E0;SPV=3.0419E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:223,159,0,0 0/0:.:167:166:1:0.6%:98,68,1,0 -Example1_ref 4879 . A . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:221,161,0,0 0/0:.:165:165:0:0%:96,69,0,0 -Example1_ref 4880 . A . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:378:0:0%:217,161,0,0 0/0:.:167:167:0:0%:98,69,0,0 -Example1_ref 4881 . A C . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=6.9485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:218,159,1,0 0/0:.:166:166:0:0%:98,68,0,0 -Example1_ref 4882 . G . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:221,158,0,0 0/0:.:168:168:0:0%:100,68,0,0 -Example1_ref 4883 . A T . PASS DP=553;SS=0;SSC=0;GPV=1E0;SPV=3.0741E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:222,161,0,0 0/0:.:170:169:1:0.59%:100,69,0,1 -Example1_ref 4884 . A . PASS DP=557;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:223,161,0,0 0/0:.:173:173:0:0%:103,70,0,0 -Example1_ref 4885 . G . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:0:0%:221,157,0,0 0/0:.:168:168:0:0%:99,69,0,0 -Example1_ref 4886 . A . PASS DP=549;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:223,154,0,0 0/0:.:172:172:0:0%:102,70,0,0 -Example1_ref 4887 . G T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=6.9742E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:221,156,1,0 0/0:.:164:164:0:0%:96,68,0,0 -Example1_ref 4888 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:226,164,0,0 0/0:.:170:170:0:0%:99,71,0,0 -Example1_ref 4889 . CA C . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=9.8334E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:359:15:4.01%:209,150,9,6 0/0:.:164:161:2:1.23%:95,66,2,0 -Example1_ref 4890 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:210,153,0,0 0/0:.:169:169:0:0%:97,72,0,0 -Example1_ref 4891 . A . PASS DP=529;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:207,153,0,0 0/0:.:169:169:0:0%:96,73,0,0 -Example1_ref 4892 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:205,153,0,0 0/0:.:170:170:0:0%:98,72,0,0 -Example1_ref 4893 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:201,154,0,0 0/0:.:171:171:0:0%:98,73,0,0 -Example1_ref 4894 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:203,154,0,0 0/0:.:165:165:0:0%:93,72,0,0 -Example1_ref 4895 . A T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=6.8061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:204,153,0,1 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 4896 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:195,147,0,0 0/0:.:166:166:0:0%:93,73,0,0 -Example1_ref 4897 . G A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=6.8352E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:364:1:0.27%:213,151,0,1 0/0:.:169:169:0:0%:96,73,0,0 -Example1_ref 4898 . T . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:212,155,0,0 0/0:.:164:164:0:0%:94,70,0,0 -Example1_ref 4899 . C . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:202,151,0,0 0/0:.:154:154:0:0%:85,69,0,0 -Example1_ref 4900 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:200,157,0,0 0/0:.:163:163:0:0%:91,72,0,0 -Example1_ref 4901 . A . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:206,157,0,0 0/0:.:160:160:0:0%:88,72,0,0 -Example1_ref 4902 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:198,157,0,0 0/0:.:153:153:0:0%:83,70,0,0 -Example1_ref 4903 . T . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:200,156,0,0 0/0:.:156:156:0:0%:87,69,0,0 -Example1_ref 4904 . A . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:200,156,0,0 0/0:.:159:159:0:0%:87,72,0,0 -Example1_ref 4905 . G . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:199,158,0,0 0/0:.:155:155:0:0%:82,73,0,0 -Example1_ref 4906 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:201,157,0,0 0/0:.:161:161:0:0%:87,74,0,0 -Example1_ref 4907 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:204,158,0,0 0/0:.:160:160:0:0%:87,73,0,0 -Example1_ref 4908 . G A . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=6.9472E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:195,159,0,1 0/0:.:156:156:0:0%:84,72,0,0 -Example1_ref 4909 . A G . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=5.1423E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:200,156,1,0 0/0:.:155:154:1:0.65%:84,70,1,0 -Example1_ref 4910 . A G . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=3.0799E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:197,158,0,0 0/0:.:158:157:1:0.63%:87,70,0,1 -Example1_ref 4911 . A . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:197,158,0,0 0/0:.:152:152:0:0%:83,69,0,0 -Example1_ref 4912 . T C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=3.004E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:196,158,0,0 0/0:.:152:151:1:0.66%:83,68,1,0 -Example1_ref 4913 . C A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=6.9565E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:191,160,1,0 0/0:.:154:154:0:0%:82,72,0,0 -Example1_ref 4914 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:198,165,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 4915 . A . PASS DP=529;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:197,171,0,0 0/0:.:161:161:0:0%:82,79,0,0 -Example1_ref 4916 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:364:0:0%:194,170,0,0 0/0:.:162:162:0:0%:84,78,0,0 -Example1_ref 4917 . A C . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=3.0451E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:200,170,0,0 0/0:.:162:161:1:0.62%:84,77,0,1 -Example1_ref 4918 . C A . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=3.0508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:195,174,0,0 0/0:.:162:161:1:0.62%:85,76,1,0 -Example1_ref 4919 . A AG . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=6.9245E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:366:1:0.27%:194,172,0,1 0/0:.:163:163:0:0%:85,78,0,0 -Example1_ref 4920 . G . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:193,172,0,0 0/0:.:158:158:0:0%:81,77,0,0 -Example1_ref 4921 . A . PASS DP=539;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:195,178,0,0 0/0:.:166:166:0:0%:86,80,0,0 -Example1_ref 4922 . A . PASS DP=533;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:190,180,0,0 0/0:.:163:163:0:0%:83,80,0,0 -Example1_ref 4923 . A . PASS DP=541;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:192,183,0,0 0/0:.:166:166:0:0%:84,82,0,0 -Example1_ref 4924 . G T . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=6.9145E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:371:1:0.27%:192,179,1,0 0/0:.:166:166:0:0%:84,82,0,0 -Example1_ref 4925 . C . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:182,181,0,0 0/0:.:156:156:0:0%:73,83,0,0 -Example1_ref 4926 . A . PASS DP=559;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:201,183,0,0 0/0:.:175:175:0:0%:89,86,0,0 -Example1_ref 4927 . T G . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=3.1402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:194,173,0,0 0/0:.:168:167:1:0.6%:82,85,1,0 -Example1_ref 4928 . A T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=6.8705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:381:1:0.26%:198,183,1,0 0/0:.:174:174:0:0%:87,87,0,0 -Example1_ref 4929 . G . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:179,181,0,0 0/0:.:163:163:0:0%:76,87,0,0 -Example1_ref 4930 . A . PASS DP=551;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:197,182,0,0 0/0:.:172:172:0:0%:86,86,0,0 -Example1_ref 4931 . A . PASS DP=551;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:193,184,0,0 0/0:.:174:174:0:0%:88,86,0,0 -Example1_ref 4932 . C A . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=5.2903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:367:1:0.27%:187,180,1,0 0/0:.:168:167:1:0.6%:82,85,1,0 -Example1_ref 4933 . AC A . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=6.9101E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:368:1:0.27%:192,176,1,0 0/0:.:165:165:0:0%:84,81,0,0 -Example1_ref 4934 . C A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=3.0156E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:184,175,0,0 0/0:.:155:154:1:0.65%:76,78,1,0 -Example1_ref 4935 . C . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:179,177,0,0 0/0:.:162:162:0:0%:79,83,0,0 -Example1_ref 4936 . A . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:189,181,0,0 0/0:.:167:167:0:0%:81,86,0,0 -Example1_ref 4937 . GAA G . PASS DP=525;SS=0;SSC=0;GPV=1E0;SPV=3.0476E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:183,182,0,0 0/0:.:160:159:1:0.62%:75,84,0,1 -Example1_ref 4938 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:0:0%:190,184,0,0 0/0:.:167:166:0:0%:80,86,0,0 -Example1_ref 4939 . A . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:0:0%:191,186,0,0 0/0:.:174:173:0:0%:84,89,0,0 -Example1_ref 4940 . C A . PASS DP=549;SS=0;SSC=0;GPV=1E0;SPV=4.7619E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:377:2:0.53%:193,184,1,1 0/0:.:170:170:0:0%:82,88,0,0 -Example1_ref 4941 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:197,190,0,0 0/0:.:167:167:0:0%:84,83,0,0 -Example1_ref 4942 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:198,191,0,0 0/0:.:165:164:0:0%:82,82,0,0 -Example1_ref 4943 . C . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:0:0%:193,186,0,0 0/0:.:158:158:0:0%:77,81,0,0 -Example1_ref 4944 . A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:192,198,0,0 0/0:.:178:178:0:0%:83,95,0,0 -Example1_ref 4945 . A G . PASS DP=565;SS=0;SSC=0;GPV=1E0;SPV=5.2146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:390:1:0.26%:190,200,0,1 0/0:.:174:173:1:0.57%:82,91,0,1 -Example1_ref 4946 . G A . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=6.8692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:372:1:0.27%:178,194,1,0 0/0:.:170:170:0:0%:76,94,0,0 -Example1_ref 4947 . A . PASS DP=553;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:187,196,0,0 0/0:.:170:170:0:0%:78,92,0,0 -Example1_ref 4948 . T A . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=5.9903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:348:4:1.14%:161,187,3,1 0/0:.:157:155:2:1.27%:67,88,2,0 -Example1_ref 4949 . C CT . PASS DP=539;SS=0;SSC=0;GPV=1E0;SPV=5.1714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:373:1:0.27%:181,192,1,0 0/0:.:165:163:1:0.61%:71,92,1,0 -Example1_ref 4950 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:0:0%:187,195,0,0 0/0:.:175:175:0:0%:79,96,0,0 -Example1_ref 4951 . A . PASS DP=554;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:378:0:0%:182,196,0,0 0/0:.:175:175:0:0%:79,96,0,0 -Example1_ref 4952 . A . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:0:0%:187,195,0,0 0/0:.:172:172:0:0%:78,94,0,0 -Example1_ref 4953 . A . PASS DP=541;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:174,195,0,0 0/0:.:172:172:0:0%:78,94,0,0 -Example1_ref 4954 . C A . PASS DP=541;SS=0;SSC=0;GPV=1E0;SPV=3.1608E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:177,193,0,0 0/0:.:171:170:1:0.58%:76,94,1,0 -Example1_ref 4955 . A C . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=3.2037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:179,188,0,0 0/0:.:173:172:1:0.58%:78,94,1,0 -Example1_ref 4956 . T A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=9.6313E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:172,178,0,0 0/0:.:158:156:2:1.27%:71,85,1,1 -Example1_ref 4957 . C A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=6.9412E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:353:1:0.28%:166,187,0,1 0/0:.:156:156:0:0%:69,87,0,0 -Example1_ref 4958 . C A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=3.6599E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:345:1:0.29%:161,184,0,1 0/0:.:160:156:4:2.5%:64,92,4,0 -Example1_ref 4959 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:174,186,0,0 0/0:.:166:166:0:0%:75,91,0,0 -Example1_ref 4960 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:177,180,0,0 0/0:.:165:165:0:0%:76,89,0,0 -Example1_ref 4961 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:160,176,0,0 0/0:.:150:150:0:0%:64,86,0,0 -Example1_ref 4962 . C . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:167,182,0,0 0/0:.:150:150:0:0%:63,87,0,0 -Example1_ref 4963 . C A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=5.2799E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:320:1:0.31%:143,177,1,0 0/0:.:146:145:1:0.68%:59,86,0,1 -Example1_ref 4964 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:339:0:0%:159,180,0,0 0/0:.:153:153:0:0%:65,88,0,0 -Example1_ref 4965 . C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:156,178,0,0 0/0:.:148:148:0:0%:61,87,0,0 -Example1_ref 4966 . T C . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=4.9555E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:310:2:0.64%:138,172,2,0 0/0:.:131:131:0:0%:51,80,0,0 -Example1_ref 4967 . C T . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=2.9284E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:149,177,0,0 0/0:.:135:134:1:0.74%:52,82,1,0 -Example1_ref 4968 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:142,181,0,0 0/0:.:145:145:0:0%:59,86,0,0 -Example1_ref 4969 . A G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=3.1004E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:136,180,0,0 0/0:.:142:141:1:0.7%:55,86,0,1 -Example1_ref 4970 . A . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:136,182,0,0 0/0:.:141:141:0:0%:54,87,0,0 -Example1_ref 4971 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:140,179,0,0 0/0:.:143:143:0:0%:56,87,0,0 -Example1_ref 4972 . C CA . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=6.9197E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:1:0.31%:139,179,0,1 0/0:.:142:142:0:0%:55,87,0,0 -Example1_ref 4973 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:140,176,0,0 0/0:.:144:144:0:0%:56,88,0,0 -Example1_ref 4974 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:140,181,0,0 0/0:.:145:145:0:0%:57,88,0,0 -Example1_ref 4975 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:138,175,0,0 0/0:.:144:144:0:0%:56,88,0,0 -Example1_ref 4976 . A . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:135,180,0,0 0/0:.:144:144:0:0%:57,87,0,0 -Example1_ref 4977 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:128,183,0,0 0/0:.:141:141:0:0%:53,88,0,0 -Example1_ref 4978 . T G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=3.0717E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:129,180,0,0 0/0:.:137:136:1:0.73%:52,84,0,1 -Example1_ref 4979 . T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:119,178,0,0 0/0:.:129:129:0:0%:47,82,0,0 -Example1_ref 4980 . C . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:123,186,0,0 0/0:.:131:131:0:0%:47,84,0,0 -Example1_ref 4981 . C A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=5.0088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:121,189,1,0 0/0:.:129:128:1:0.78%:43,85,1,0 -Example1_ref 4982 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:126,189,0,0 0/0:.:142:141:0:0%:53,88,0,0 -Example1_ref 4983 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:121,190,0,0 0/0:.:137:137:0:0%:51,86,0,0 -Example1_ref 4984 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:125,191,0,0 0/0:.:140:140:0:0%:53,87,0,0 -Example1_ref 4985 . A G . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=6.6546E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:310:2:0.64%:123,187,0,2 0/0:.:137:136:1:0.73%:51,85,0,1 -Example1_ref 4986 . G . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:116,188,0,0 0/0:.:135:135:0:0%:46,89,0,0 -Example1_ref 4987 . C . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:120,187,0,0 0/0:.:130:130:0:0%:43,87,0,0 -Example1_ref 4988 . G A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=2.9952E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:103,187,0,0 0/0:.:124:123:1:0.81%:41,82,1,0 -Example1_ref 4989 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:123,187,0,0 0/0:.:138:138:0:0%:50,88,0,0 -Example1_ref 4990 . C A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=3.0303E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:117,182,0,0 0/0:.:130:129:1:0.77%:47,82,0,1 -Example1_ref 4991 . C . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:109,188,0,0 0/0:.:130:130:0:0%:46,84,0,0 -Example1_ref 4992 . G T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=5.0781E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:103,188,0,1 0/0:.:124:123:1:0.81%:38,85,0,1 -Example1_ref 4993 . G A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=3.037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:94,188,0,0 0/0:.:123:122:1:0.81%:38,84,0,1 -Example1_ref 4994 . C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:107,185,0,0 0/0:.:123:123:0:0%:40,83,0,0 -Example1_ref 4995 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:110,193,0,0 0/0:.:133:133:0:0%:45,88,0,0 -Example1_ref 4996 . A ACTGTC . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=6.9773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:1:0.33%:113,193,1,0 0/0:.:133:133:0:0%:45,88,0,0 -Example1_ref 4997 . C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:116,192,0,0 0/0:.:128:128:0:0%:42,86,0,0 -Example1_ref 4998 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:120,193,0,0 0/0:.:135:135:0:0%:47,88,0,0 -Example1_ref 4999 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:122,187,0,0 0/0:.:129:129:0:0%:43,86,0,0 -Example1_ref 5000 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:314:0:0%:126,188,0,0 0/0:.:136:135:0:0%:49,86,0,0 -Example1_ref 5001 . A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:126,192,0,0 0/0:.:135:135:0:0%:49,86,0,0 -Example1_ref 5002 . C A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=2.9213E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:121,194,0,0 0/0:.:130:129:1:0.77%:45,84,0,1 -Example1_ref 5003 . A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:117,194,0,0 0/0:.:132:132:0:0%:48,84,0,0 -Example1_ref 5004 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:117,192,0,0 0/0:.:131:131:0:0%:48,83,0,0 -Example1_ref 5005 . G . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:106,190,0,0 0/0:.:133:133:0:0%:46,87,0,0 -Example1_ref 5006 . C . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:109,183,0,0 0/0:.:131:131:0:0%:48,83,0,0 -Example1_ref 5007 . A . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:116,193,0,0 0/0:.:138:138:0:0%:51,87,0,0 -Example1_ref 5008 . C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:119,187,0,0 0/0:.:130:130:0:0%:46,84,0,0 -Example1_ref 5009 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:113,185,0,0 0/0:.:126:126:0:0%:43,83,0,0 -Example1_ref 5010 . G A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=6.9856E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:103,188,0,1 0/0:.:126:126:0:0%:41,85,0,0 -Example1_ref 5011 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:114,193,0,0 0/0:.:135:135:0:0%:48,87,0,0 -Example1_ref 5012 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:119,197,0,0 0/0:.:140:140:0:0%:51,89,0,0 -Example1_ref 5013 . C . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:118,198,0,0 0/0:.:133:133:0:0%:46,87,0,0 -Example1_ref 5014 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:119,191,0,0 0/0:.:136:136:0:0%:50,86,0,0 -Example1_ref 5015 . C A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=6.9231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:117,179,0,1 0/0:.:132:132:0:0%:46,86,0,0 -Example1_ref 5016 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:117,187,0,0 0/0:.:133:133:0:0%:50,83,0,0 -Example1_ref 5017 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:119,187,0,0 0/0:.:131:131:0:0%:47,84,0,0 -Example1_ref 5018 . T C . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=7.1059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:110,191,1,0 0/0:.:123:123:0:0%:45,78,0,0 -Example1_ref 5019 . G . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:105,188,0,0 0/0:.:126:126:0:0%:45,81,0,0 -Example1_ref 5020 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:108,184,0,0 0/0:.:128:128:0:0%:47,81,0,0 -Example1_ref 5021 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:110,183,0,0 0/0:.:125:125:0:0%:44,81,0,0 -Example1_ref 5022 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:114,189,0,0 0/0:.:126:126:0:0%:44,82,0,0 -Example1_ref 5023 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:111,188,0,0 0/0:.:130:130:0:0%:48,82,0,0 -Example1_ref 5024 . T . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:116,179,0,0 0/0:.:126:126:0:0%:48,78,0,0 -Example1_ref 5025 . T G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=2.9756E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:112,176,0,0 0/0:.:122:121:1:0.82%:46,75,0,1 -Example1_ref 5026 . T A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.1675E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:114,176,1,0 0/0:.:115:115:0:0%:45,70,0,0 -Example1_ref 5027 . C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:118,174,0,0 0/0:.:112:112:0:0%:45,67,0,0 -Example1_ref 5028 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:119,176,0,0 0/0:.:118:118:0:0%:46,72,0,0 -Example1_ref 5029 . A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:120,178,0,0 0/0:.:117:117:0:0%:45,72,0,0 -Example1_ref 5030 . T . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:118,173,0,0 0/0:.:108:108:0:0%:40,68,0,0 -Example1_ref 5031 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:117,179,0,0 0/0:.:110:110:0:0%:41,69,0,0 -Example1_ref 5032 . T TC . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=4.6124E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:119,173,1,0 0/0:.:106:105:1:0.94%:41,64,1,0 -Example1_ref 5033 . T A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:115,170,1,0 0/0:.:104:104:0:0%:38,66,0,0 -Example1_ref 5034 . G T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=2.672E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:106,171,0,0 0/0:.:101:100:1:0.99%:34,66,1,0 -Example1_ref 5035 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:117,173,0,0 0/0:.:102:102:0:0%:39,63,0,0 -Example1_ref 5036 . T C . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=4.5874E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:113,176,0,1 0/0:.:105:103:1:0.96%:36,67,1,0 -Example1_ref 5037 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:116,177,0,0 0/0:.:101:101:0:0%:36,65,0,0 -Example1_ref 5038 . A C . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=2.6515E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:116,175,0,0 0/0:.:105:104:1:0.95%:38,66,1,0 -Example1_ref 5039 . T . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:115,173,0,0 0/0:.:105:105:0:0%:38,67,0,0 -Example1_ref 5040 . T G . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=2.6718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:113,175,0,0 0/0:.:105:104:1:0.95%:39,65,0,1 -Example1_ref 5041 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:113,179,0,0 0/0:.:109:109:0:0%:42,67,0,0 -Example1_ref 5042 . TC T . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=4.733E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:280:1:0.36%:110,170,1,0 0/0:.:106:105:1:0.94%:41,64,1,0 -Example1_ref 5043 . C A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.3146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:108,177,0,1 0/0:.:106:105:0:0%:38,67,0,0 -Example1_ref 5044 . A T . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=7.3028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:108,178,0,1 0/0:.:106:106:0:0%:40,66,0,0 -Example1_ref 5045 . C . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:106,176,0,0 0/0:.:104:104:0:0%:39,65,0,0 -Example1_ref 5046 . A . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:105,178,0,0 0/0:.:102:102:0:0%:38,64,0,0 -Example1_ref 5047 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:109,178,0,0 0/0:.:102:102:0:0%:38,64,0,0 -Example1_ref 5048 . C . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:99,180,0,0 0/0:.:102:102:0:0%:37,65,0,0 -Example1_ref 5049 . C . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:98,180,0,0 0/0:.:103:103:0:0%:37,66,0,0 -Example1_ref 5050 . A G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.2895E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:101,175,0,1 0/0:.:103:103:0:0%:37,66,0,0 -Example1_ref 5051 . T . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:100,171,0,0 0/0:.:98:98:0:0%:36,62,0,0 -Example1_ref 5052 . G . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:102,177,0,0 0/0:.:100:100:0:0%:35,65,0,0 -Example1_ref 5053 . A . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:105,175,0,0 0/0:.:101:101:0:0%:38,63,0,0 -Example1_ref 5054 . T . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:104,173,0,0 0/0:.:96:96:0:0%:35,61,0,0 -Example1_ref 5055 . C . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:277:0:0%:101,176,0,0 0/0:.:97:97:0:0%:35,62,0,0 -Example1_ref 5056 . A AG . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:104,170,0,1 0/0:.:100:100:0:0%:37,63,0,0 -Example1_ref 5057 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:104,168,0,0 0/0:.:96:95:0:0%:36,59,0,0 -Example1_ref 5058 . G . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:99,168,0,0 0/0:.:100:100:0:0%:38,62,0,0 -Example1_ref 5059 . G T . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=7.2752E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:95,171,1,0 0/0:.:100:100:0:0%:36,64,0,0 -Example1_ref 5060 . C A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=7.4324E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:105,169,0,1 0/0:.:95:95:0:0%:36,59,0,0 -Example1_ref 5061 . A . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:105,168,0,0 0/0:.:102:102:0:0%:38,64,0,0 -Example1_ref 5062 . TCA T . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=7.3842E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:103,167,0,1 0/0:.:96:96:0:0%:36,60,0,0 -Example1_ref 5063 . C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:103,166,0,0 0/0:.:99:99:0:0%:37,62,0,0 -Example1_ref 5064 . A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:106,170,0,0 0/0:.:101:101:0:0%:37,64,0,0 -Example1_ref 5065 . C . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:105,168,0,0 0/0:.:100:100:0:0%:37,63,0,0 -Example1_ref 5066 . A AG . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=7.2849E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:107,163,0,1 0/0:.:101:101:0:0%:36,65,0,0 -Example1_ref 5067 . T G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=4.7413E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:103,163,0,1 0/0:.:101:100:1:0.99%:38,62,0,1 -Example1_ref 5068 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:103,157,0,0 0/0:.:100:100:0:0%:38,62,0,0 -Example1_ref 5069 . G T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=4.9262E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:95,162,1,0 0/0:.:104:103:1:0.96%:35,68,1,0 -Example1_ref 5070 . C A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=5.0907E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:255:2:0.78%:100,155,0,2 0/0:.:103:103:0:0%:38,65,0,0 -Example1_ref 5071 . C . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:106,161,0,0 0/0:.:98:98:0:0%:36,62,0,0 -Example1_ref 5072 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:105,164,0,0 0/0:.:107:107:0:0%:38,69,0,0 -Example1_ref 5073 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:102,164,0,0 0/0:.:104:104:0:0%:38,66,0,0 -Example1_ref 5074 . A C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=2.7957E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:103,165,0,0 0/0:.:104:103:1:0.96%:35,68,1,0 -Example1_ref 5075 . T . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:104,164,0,0 0/0:.:105:105:0:0%:38,67,0,0 -Example1_ref 5076 . A C . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=7.0976E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:103,165,1,0 0/0:.:110:110:0:0%:37,73,0,0 -Example1_ref 5077 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:100,166,0,0 0/0:.:110:110:0:0%:37,73,0,0 -Example1_ref 5078 . A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:103,162,0,0 0/0:.:112:112:0:0%:39,73,0,0 -Example1_ref 5079 . C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:103,160,0,0 0/0:.:109:109:0:0%:38,71,0,0 -Example1_ref 5080 . A AG . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=5.0606E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:103,159,0,1 0/0:.:111:110:1:0.9%:39,71,0,1 -Example1_ref 5081 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:107,159,0,0 0/0:.:108:108:0:0%:40,68,0,0 -Example1_ref 5082 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:104,166,0,0 0/0:.:110:110:0:0%:37,73,0,0 -Example1_ref 5083 . A G . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=6.9974E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:103,164,0,1 0/0:.:115:115:0:0%:41,74,0,0 -Example1_ref 5084 . C CA . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=5.0576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:107,160,0,1 0/0:.:113:112:1:0.88%:42,70,0,1 -Example1_ref 5085 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:108,165,0,0 0/0:.:113:113:0:0%:42,71,0,0 -Example1_ref 5086 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:108,161,0,0 0/0:.:117:116:0:0%:42,74,0,0 -Example1_ref 5087 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:106,162,0,0 0/0:.:112:112:0:0%:39,73,0,0 -Example1_ref 5088 . A G . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=6.9531E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:266:1:0.37%:106,160,0,1 0/0:.:117:117:0:0%:42,75,0,0 -Example1_ref 5089 . C . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:106,167,0,0 0/0:.:116:116:0:0%:42,74,0,0 -Example1_ref 5090 . TA T . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=3.0649E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:106,161,0,0 0/0:.:118:117:1:0.85%:44,73,0,1 -Example1_ref 5091 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:105,166,0,0 0/0:.:118:118:0:0%:43,75,0,0 -Example1_ref 5092 . C . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:106,167,0,0 0/0:.:114:114:0:0%:44,70,0,0 -Example1_ref 5093 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:103,165,0,0 0/0:.:116:116:0:0%:43,73,0,0 -Example1_ref 5094 . G . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:100,165,0,0 0/0:.:116:116:0:0%:42,74,0,0 -Example1_ref 5095 . C . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:105,163,0,0 0/0:.:111:111:0:0%:41,70,0,0 -Example1_ref 5096 . A G . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=6.9309E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:105,165,1,0 0/0:.:120:120:0:0%:44,76,0,0 -Example1_ref 5097 . T . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:110,165,0,0 0/0:.:118:118:0:0%:42,76,0,0 -Example1_ref 5098 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:108,162,0,0 0/0:.:118:118:0:0%:42,76,0,0 -Example1_ref 5099 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:113,164,0,0 0/0:.:117:117:0:0%:43,74,0,0 -Example1_ref 5100 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:109,165,0,0 0/0:.:122:122:0:0%:45,77,0,0 -Example1_ref 5101 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:111,158,0,0 0/0:.:117:117:0:0%:42,75,0,0 -Example1_ref 5102 . G GTGC . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:272:1:0.37%:107,165,1,0 0/0:.:117:117:0:0%:41,76,0,0 -Example1_ref 5103 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:112,159,0,0 0/0:.:117:117:0:0%:44,73,0,0 -Example1_ref 5104 . G T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=3.0366E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:109,157,0,0 0/0:.:116:115:1:0.86%:42,73,1,0 -Example1_ref 5105 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:112,154,0,0 0/0:.:114:114:0:0%:44,70,0,0 -Example1_ref 5106 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:114,156,0,0 0/0:.:117:117:0:0%:46,71,0,0 -Example1_ref 5107 . T TC . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=5.1264E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:117,160,1,0 0/0:.:120:119:1:0.83%:45,74,1,0 -Example1_ref 5108 . T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:117,156,0,0 0/0:.:117:116:0:0%:44,72,0,0 -Example1_ref 5109 . G T . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=4.7985E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:260:2:0.76%:107,153,2,0 0/0:.:116:116:0:0%:43,73,0,0 -Example1_ref 5110 . G . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:108,151,0,0 0/0:.:116:116:0:0%:42,74,0,0 -Example1_ref 5111 . T G . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=7.0077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:120,153,0,1 0/0:.:117:117:0:0%:46,71,0,0 -Example1_ref 5112 . C . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:0:0%:113,144,0,0 0/0:.:109:109:0:0%:43,66,0,0 -Example1_ref 5113 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:115,155,0,0 0/0:.:114:114:0:0%:43,71,0,0 -Example1_ref 5114 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:0:0%:118,157,0,0 0/0:.:114:114:0:0%:43,71,0,0 -Example1_ref 5115 . C . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:119,156,0,0 0/0:.:114:114:0:0%:42,72,0,0 -Example1_ref 5116 . A AG . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=7.1576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:119,157,0,1 0/0:.:110:110:0:0%:41,69,0,0 -Example1_ref 5117 . GT G . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=7.1059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:120,154,0,1 0/0:.:112:112:0:0%:44,68,0,0 -Example1_ref 5118 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:127,152,0,0 0/0:.:108:108:0:0%:44,64,0,0 -Example1_ref 5119 . C A . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=7.2585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:125,152,0,1 0/0:.:105:105:0:0%:42,63,0,0 -Example1_ref 5120 . C . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:122,159,0,0 0/0:.:106:106:0:0%:42,64,0,0 -Example1_ref 5121 . T G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.1684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:280:1:0.36%:123,157,0,1 0/0:.:111:111:0:0%:42,69,0,0 -Example1_ref 5122 . A G . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=7.193E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:126,160,0,1 0/0:.:112:112:0:0%:42,70,0,0 -Example1_ref 5123 . A AGG . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=7.1465E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:277:1:0.36%:119,158,1,0 0/0:.:111:111:0:0%:43,68,0,0 -Example1_ref 5124 . G . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:123,153,0,0 0/0:.:109:109:0:0%:41,68,0,0 -Example1_ref 5125 . G GGCT . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=7.2632E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:275:1:0.36%:121,154,1,0 0/0:.:104:104:0:0%:42,62,0,0 -Example1_ref 5126 . G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:125,149,0,0 0/0:.:110:110:0:0%:41,69,0,0 -Example1_ref 5127 . T . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:130,134,0,0 0/0:.:101:101:0:0%:42,59,0,0 -Example1_ref 5128 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:126,134,0,0 0/0:.:102:102:0:0%:42,60,0,0 -Example1_ref 5129 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:130,133,0,0 0/0:.:101:101:0:0%:43,58,0,0 -Example1_ref 5130 . G . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:125,134,0,0 0/0:.:102:102:0:0%:43,59,0,0 -Example1_ref 5131 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:128,131,0,0 0/0:.:101:101:0:0%:43,58,0,0 -Example1_ref 5132 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:127,132,0,0 0/0:.:103:103:0:0%:43,60,0,0 -Example1_ref 5133 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:124,133,0,0 0/0:.:99:99:0:0%:42,57,0,0 -Example1_ref 5134 . A G . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=7.2997E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:121,124,1,0 0/0:.:91:91:0:0%:39,52,0,0 -Example1_ref 5135 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:125,120,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 5136 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:124,123,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 5137 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:125,123,0,0 0/0:.:90:90:0:0%:44,46,0,0 -Example1_ref 5138 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:124,123,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 5139 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:126,125,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 5140 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:124,124,0,0 0/0:.:90:90:0:0%:43,47,0,0 -Example1_ref 5141 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:125,124,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 5142 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:127,124,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 5143 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:125,123,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 5144 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:121,125,0,0 0/0:.:91:91:0:0%:41,50,0,0 -Example1_ref 5145 . T . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:117,121,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 5146 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:117,119,0,0 0/0:.:83:83:0:0%:37,46,0,0 -Example1_ref 5147 . T C . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=7.3214E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:245:1:0.41%:120,125,0,1 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 5148 . C . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:117,129,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 5149 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:113,132,0,0 0/0:.:89:89:0:0%:38,51,0,0 -Example1_ref 5150 . A G . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.2781E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:116,129,0,1 0/0:.:92:92:0:0%:39,53,0,0 -Example1_ref 5151 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:118,131,0,0 0/0:.:90:90:0:0%:39,51,0,0 -Example1_ref 5152 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:116,130,0,0 0/0:.:93:93:0:0%:40,53,0,0 -Example1_ref 5153 . C . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:118,131,0,0 0/0:.:94:94:0:0%:40,54,0,0 -Example1_ref 5154 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:94:94:0:0%:41,53,0,0 -Example1_ref 5155 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:116,133,0,0 0/0:.:93:93:0:0%:39,54,0,0 -Example1_ref 5156 . G . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:118,132,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 5157 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:116,133,0,0 0/0:.:96:96:0:0%:41,55,0,0 -Example1_ref 5158 . T . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:119,133,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 5159 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:122,133,0,0 0/0:.:95:95:0:0%:41,54,0,0 -Example1_ref 5160 . T . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:123,135,0,0 0/0:.:93:93:0:0%:40,53,0,0 -Example1_ref 5161 . CT C . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=2.6934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:121,134,0,0 0/0:.:94:93:1:1.06%:41,52,1,0 -Example1_ref 5162 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:121,136,0,0 0/0:.:93:92:0:0%:40,52,0,0 -Example1_ref 5163 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:121,135,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 5164 . A . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:121,134,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 5165 . T . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:121,131,0,0 0/0:.:93:93:0:0%:43,50,0,0 -Example1_ref 5166 . T . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:120,128,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 5167 . T . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:120,130,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 5168 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:122,123,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 5169 . G T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=4.8292E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:114,121,1,0 0/0:.:92:91:1:1.09%:41,50,1,0 -Example1_ref 5170 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:121,123,0,0 0/0:.:93:93:0:0%:43,50,0,0 -Example1_ref 5171 . G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:119,121,0,0 0/0:.:90:90:0:0%:39,51,0,0 -Example1_ref 5172 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 5173 . C A . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=7.2205E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:121,117,1,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 5174 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:119,117,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 5175 . C . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:121,119,0,0 0/0:.:89:89:0:0%:39,50,0,0 -Example1_ref 5176 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:120,122,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 5177 . T A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=7.3134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:123,121,1,0 0/0:.:90:90:0:0%:43,47,0,0 -Example1_ref 5178 . A G . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=2.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:123,125,0,0 0/0:.:93:92:1:1.08%:43,49,0,1 -Example1_ref 5179 . C . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:121,119,0,0 0/0:.:91:91:0:0%:42,49,0,0 -Example1_ref 5180 . C . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:120,121,0,0 0/0:.:88:88:0:0%:40,48,0,0 -Example1_ref 5181 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:124,121,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 5182 . A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:119,122,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 5183 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:120,121,0,0 0/0:.:92:92:0:0%:40,52,0,0 -Example1_ref 5184 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:119,120,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 5185 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:115,122,0,0 0/0:.:93:93:0:0%:43,50,0,0 -Example1_ref 5186 . T . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:120,120,0,0 0/0:.:91:91:0:0%:42,49,0,0 -Example1_ref 5187 . A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:115,120,0,0 0/0:.:90:90:0:0%:40,50,0,0 -Example1_ref 5188 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:0:0%:108,120,0,0 0/0:.:85:85:0:0%:35,50,0,0 -Example1_ref 5189 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:105,118,0,0 0/0:.:88:88:0:0%:37,51,0,0 -Example1_ref 5190 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:107,120,0,0 0/0:.:91:91:0:0%:38,53,0,0 -Example1_ref 5191 . G T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=5.2705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:229:2:0.87%:106,123,2,0 0/0:.:87:87:0:0%:36,51,0,0 -Example1_ref 5192 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:110,116,0,0 0/0:.:90:90:0:0%:39,51,0,0 -Example1_ref 5193 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:85:85:0:0%:39,46,0,0 -Example1_ref 5194 . T C . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=7.2555E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:229:1:0.43%:113,116,1,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 5195 . C . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:111,118,0,0 0/0:.:88:88:0:0%:38,50,0,0 -Example1_ref 5196 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:90:90:0:0%:38,52,0,0 -Example1_ref 5197 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:112,121,0,0 0/0:.:89:89:0:0%:37,52,0,0 -Example1_ref 5198 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:111,122,0,0 0/0:.:90:90:0:0%:38,52,0,0 -Example1_ref 5199 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:108,120,0,0 0/0:.:90:90:0:0%:37,53,0,0 -Example1_ref 5200 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:110,114,0,0 0/0:.:84:84:0:0%:39,45,0,0 -Example1_ref 5201 . C . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:110,112,0,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 5202 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:0:0%:105,108,0,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 5203 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:109,112,0,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 5204 . G T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=2.8713E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:106,110,0,0 0/0:.:87:86:1:1.15%:35,51,1,0 -Example1_ref 5205 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:107,110,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 5206 . G GA . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=2.8716E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:102,109,0,0 0/0:.:85:84:1:1.18%:36,48,1,0 -Example1_ref 5207 . G T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.1088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:99,109,1,0 0/0:.:85:85:0:0%:39,46,0,0 -Example1_ref 5208 . T G . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=2.8082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:103,107,0,0 0/0:.:82:81:1:1.22%:34,47,0,1 -Example1_ref 5209 . G T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=4.9482E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:94,107,1,0 0/0:.:82:81:1:1.22%:35,46,1,0 -Example1_ref 5210 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:104,108,0,0 0/0:.:85:85:0:0%:36,49,0,0 -Example1_ref 5211 . C A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=5.2543E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:204:2:0.97%:104,100,0,2 0/0:.:78:78:0:0%:36,42,0,0 -Example1_ref 5212 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:97,108,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 5213 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 5214 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:98,105,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 5215 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:98,108,0,0 0/0:.:83:83:0:0%:36,47,0,0 -Example1_ref 5216 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:97,108,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 5217 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:91,108,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 5218 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:95,106,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 5219 . T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:94,104,0,0 0/0:.:85:85:0:0%:38,47,0,0 -Example1_ref 5220 . C . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:0:0%:94,105,0,0 0/0:.:85:85:0:0%:39,46,0,0 -Example1_ref 5221 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:93,106,0,0 0/0:.:88:88:0:0%:38,50,0,0 -Example1_ref 5222 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:92,106,0,0 0/0:.:85:85:0:0%:36,49,0,0 -Example1_ref 5223 . G . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:91,106,0,0 0/0:.:84:83:0:0%:37,46,0,0 -Example1_ref 5224 . C A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=3.0108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:91,104,0,0 0/0:.:84:83:1:1.19%:37,46,0,1 -Example1_ref 5225 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:91,102,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 5226 . A G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=3.156E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:91,102,0,0 0/0:.:89:88:1:1.12%:40,48,0,1 -Example1_ref 5227 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:94,101,0,0 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 5228 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:94,104,0,0 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 5229 . C . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:92,101,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 5230 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:92,102,0,0 0/0:.:88:88:0:0%:38,50,0,0 -Example1_ref 5231 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:90,102,0,0 0/0:.:88:88:0:0%:38,50,0,0 -Example1_ref 5232 . G C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=3.0282E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:94,104,0,0 0/0:.:86:85:1:1.16%:35,50,1,0 -Example1_ref 5233 . AG A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.0714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:97,100,0,1 0/0:.:82:82:0:0%:37,45,0,0 -Example1_ref 5234 . G GACA . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=5.2565E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:95,97,0,1 0/0:.:87:86:1:1.15%:38,48,0,1 -Example1_ref 5235 . G . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:97,99,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 5236 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:87:87:0:0%:37,50,0,0 -Example1_ref 5237 . T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:90,100,0,0 0/0:.:85:85:0:0%:35,50,0,0 -Example1_ref 5238 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:91,98,0,0 0/0:.:86:86:0:0%:37,49,0,0 -Example1_ref 5239 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:91,99,0,0 0/0:.:82:82:0:0%:37,45,0,0 -Example1_ref 5240 . T C . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=6.9091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:91,98,1,0 0/0:.:85:85:0:0%:36,49,0,0 -Example1_ref 5241 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:88,97,0,0 0/0:.:85:85:0:0%:36,49,0,0 -Example1_ref 5242 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:83,96,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 5243 . A T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=6.9173E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:84,99,1,0 0/0:.:82:82:0:0%:33,49,0,0 -Example1_ref 5244 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:85,95,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 5245 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:86,86,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 5246 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:86,85,0,0 0/0:.:80:80:0:0%:32,48,0,0 -Example1_ref 5247 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:79,88,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 5248 . C . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:84,86,0,0 0/0:.:83:83:0:0%:35,48,0,0 -Example1_ref 5249 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:82,87,0,0 0/0:.:82:82:0:0%:37,45,0,0 -Example1_ref 5250 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:84,84,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 5251 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 5252 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:84,86,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 5253 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:83,86,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 5254 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:82,86,0,0 0/0:.:84:84:0:0%:39,45,0,0 -Example1_ref 5255 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:83,84,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 5256 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:82,85,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 5257 . C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:85,86,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 5258 . C . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:86,86,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 5259 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:85,87,0,0 0/0:.:78:78:0:0%:37,41,0,0 -Example1_ref 5260 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:85,85,0,0 0/0:.:79:79:0:0%:39,40,0,0 -Example1_ref 5261 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:0:0%:87,86,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 5262 . A C . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=3.2422E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:86,87,0,0 0/0:.:83:82:1:1.2%:39,43,1,0 -Example1_ref 5263 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:84,88,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 5264 . A ATC . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=5.4059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:84,88,1,0 0/0:.:82:81:1:1.22%:38,43,1,0 -Example1_ref 5265 . T C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=2.2835E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:85,85,0,1 0/0:.:77:75:2:2.6%:35,40,0,2 -Example1_ref 5266 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:86,83,0,0 0/0:.:72:71:0:0%:36,35,0,0 -Example1_ref 5267 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:71:71:0:0%:37,34,0,0 -Example1_ref 5268 . T . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:69:68:0:0%:36,32,0,0 -Example1_ref 5269 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 5270 . G T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:82,79,1,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 5271 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:81,79,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 5272 . C T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=7.0852E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:82,75,1,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 5273 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:83,79,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 5274 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:82,81,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 5275 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 5276 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 5277 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:83,82,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 5278 . T . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:88,79,0,0 0/0:.:68:68:0:0%:37,31,0,0 -Example1_ref 5279 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:87,78,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 5280 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:88,81,0,0 0/0:.:68:68:0:0%:37,31,0,0 -Example1_ref 5281 . C CTCCT . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=7.1489E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:86,81,1,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 5282 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:88,82,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 5283 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:83,83,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 5284 . A AC . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:1:0.61%:86,78,0,1 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 5285 . A C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=2.8755E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:0:0%:86,80,0,0 0/0:.:67:66:1:1.49%:35,31,1,0 -Example1_ref 5286 . GGATGT G . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=7.1681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:161:1:0.62%:82,79,0,1 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 5287 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:81,80,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 5288 . A AC . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=7.0386E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:81,82,1,0 0/0:.:69:69:0:0%:37,32,0,0 -Example1_ref 5289 . T C . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=7.0886E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:86,81,0,1 0/0:.:69:69:0:0%:37,32,0,0 -Example1_ref 5290 . G A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=6.9492E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:83,80,0,1 0/0:.:72:72:0:0%:40,32,0,0 -Example1_ref 5291 . T G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=7.0513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:84,80,0,1 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 5292 . G GT . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=2.9046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:88,83,0,0 0/0:.:70:69:1:1.43%:39,30,0,1 -Example1_ref 5293 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:89,85,0,0 0/0:.:69:69:0:0%:37,32,0,0 -Example1_ref 5294 . T TA . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=2.8745E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:0:0%:92,84,0,0 0/0:.:71:70:1:1.41%:38,32,0,1 -Example1_ref 5295 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:92,81,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 5296 . G GC . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=4.9323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:166:2:1.19%:86,80,2,0 0/0:.:71:71:0:0%:38,33,0,0 -Example1_ref 5297 . T A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=2.9464E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:87,71,0,0 0/0:.:66:65:1:1.52%:39,26,0,1 -Example1_ref 5298 . G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 5299 . A ACCTGT . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.0222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:84,73,1,0 0/0:.:67:67:0:0%:39,28,0,0 -Example1_ref 5300 . C A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.0667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:86,72,1,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 5301 . T A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=3.0769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:85,68,0,0 0/0:.:68:67:1:1.47%:40,27,0,1 -Example1_ref 5302 . A G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=9.1208E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:68:66:2:2.94%:41,25,0,2 -Example1_ref 5303 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:68:68:0:0%:42,26,0,0 -Example1_ref 5304 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:67:67:0:0%:40,27,0,0 -Example1_ref 5305 . C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:0:0%:91,69,0,0 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 5306 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 5307 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:82,68,0,0 0/0:.:68:68:0:0%:39,29,0,0 -Example1_ref 5308 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:81,67,0,0 0/0:.:68:68:0:0%:39,29,0,0 -Example1_ref 5309 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:82,68,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 5310 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:86,67,0,0 0/0:.:68:68:0:0%:39,29,0,0 -Example1_ref 5311 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:64:64:0:0%:39,25,0,0 -Example1_ref 5312 . C A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=4.7326E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:144:2:1.37%:80,64,1,1 0/0:.:66:66:0:0%:41,25,0,0 -Example1_ref 5313 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:64:64:0:0%:41,23,0,0 -Example1_ref 5314 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:68:68:0:0%:40,28,0,0 -Example1_ref 5315 . A T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=6.7453E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:77,65,1,0 0/0:.:69:69:0:0%:41,28,0,0 -Example1_ref 5316 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:83,65,0,0 0/0:.:69:69:0:0%:42,27,0,0 -Example1_ref 5317 . G A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=6.8142E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:85,68,1,0 0/0:.:72:72:0:0%:42,30,0,0 -Example1_ref 5318 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:73:73:0:0%:43,30,0,0 -Example1_ref 5319 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:86,68,0,0 0/0:.:71:71:0:0%:42,29,0,0 -Example1_ref 5320 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:72:72:0:0%:42,30,0,0 -Example1_ref 5321 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:73:73:0:0%:43,30,0,0 -Example1_ref 5322 . C . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:89,66,0,0 0/0:.:72:72:0:0%:44,28,0,0 -Example1_ref 5323 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:91,67,0,0 0/0:.:72:72:0:0%:44,28,0,0 -Example1_ref 5324 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:71:71:0:0%:44,27,0,0 -Example1_ref 5325 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:71:71:0:0%:43,28,0,0 -Example1_ref 5326 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:89,69,0,0 0/0:.:70:70:0:0%:43,27,0,0 -Example1_ref 5327 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:69:69:0:0%:41,28,0,0 -Example1_ref 5328 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:99,60,0,0 0/0:.:73:73:0:0%:47,26,0,0 -Example1_ref 5329 . C A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=4.7751E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:2:1.2%:98,66,0,2 0/0:.:74:74:0:0%:48,26,0,0 -Example1_ref 5330 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:75:75:0:0%:48,27,0,0 -Example1_ref 5331 . C . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:102,68,0,0 0/0:.:76:76:0:0%:48,28,0,0 -Example1_ref 5332 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:103,69,0,0 0/0:.:75:75:0:0%:47,28,0,0 -Example1_ref 5333 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:107,68,0,0 0/0:.:76:76:0:0%:48,28,0,0 -Example1_ref 5334 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:108,71,0,0 0/0:.:76:76:0:0%:48,28,0,0 -Example1_ref 5335 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:108,71,0,0 0/0:.:77:77:0:0%:48,29,0,0 -Example1_ref 5336 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:111,71,0,0 0/0:.:78:78:0:0%:48,30,0,0 -Example1_ref 5337 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:110,71,0,0 0/0:.:76:76:0:0%:48,28,0,0 -Example1_ref 5338 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:108,71,0,0 0/0:.:77:77:0:0%:48,29,0,0 -Example1_ref 5339 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:109,71,0,0 0/0:.:77:77:0:0%:48,29,0,0 -Example1_ref 5340 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:110,74,0,0 0/0:.:78:78:0:0%:48,30,0,0 -Example1_ref 5341 . C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:110,74,0,0 0/0:.:73:73:0:0%:47,26,0,0 -Example1_ref 5342 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:110,72,0,0 0/0:.:74:74:0:0%:45,29,0,0 -Example1_ref 5343 . A T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=7.0656E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:109,73,0,1 0/0:.:76:76:0:0%:48,28,0,0 -Example1_ref 5344 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:106,72,0,0 0/0:.:75:75:0:0%:47,28,0,0 -Example1_ref 5345 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:106,71,0,0 0/0:.:76:76:0:0%:48,28,0,0 -Example1_ref 5346 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:112,71,0,0 0/0:.:75:75:0:0%:47,28,0,0 -Example1_ref 5347 . T A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.0312E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:110,69,1,0 0/0:.:76:76:0:0%:48,28,0,0 -Example1_ref 5348 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:112,76,0,0 0/0:.:74:74:0:0%:46,28,0,0 -Example1_ref 5349 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:75:75:0:0%:46,29,0,0 -Example1_ref 5350 . G A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=2.8958E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:109,75,0,0 0/0:.:75:74:1:1.33%:46,28,0,1 -Example1_ref 5351 . G T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=2.9961E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:103,77,0,0 0/0:.:77:76:1:1.3%:45,31,1,0 -Example1_ref 5352 . A G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=2.9762E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:103,74,0,0 0/0:.:75:74:1:1.33%:45,29,0,1 -Example1_ref 5353 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:109,76,0,0 0/0:.:76:76:0:0%:45,31,0,0 -Example1_ref 5354 . G T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=7.0498E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:107,76,1,0 0/0:.:77:77:0:0%:48,29,0,0 -Example1_ref 5355 . G . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:106,77,0,0 0/0:.:76:76:0:0%:47,29,0,0 -Example1_ref 5356 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:107,74,0,0 0/0:.:81:81:0:0%:49,32,0,0 -Example1_ref 5357 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:110,76,0,0 0/0:.:81:81:0:0%:49,32,0,0 -Example1_ref 5358 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:118,83,0,0 0/0:.:93:93:0:0%:53,40,0,0 -Example1_ref 5359 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:122,86,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 5360 . T G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:124,85,0,1 0/0:.:90:90:0:0%:52,38,0,0 -Example1_ref 5361 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:126,87,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 5362 . G A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=6.9737E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:122,89,1,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 5363 . G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:130,89,0,0 0/0:.:90:89:0:0%:47,42,0,0 -Example1_ref 5364 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:128,92,0,0 0/0:.:94:94:0:0%:50,44,0,0 -Example1_ref 5365 . A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:131,91,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 5366 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:136,89,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 5367 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:136,89,0,0 0/0:.:95:95:0:0%:52,43,0,0 -Example1_ref 5368 . A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:136,87,0,0 0/0:.:96:96:0:0%:52,44,0,0 -Example1_ref 5369 . T . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:136,86,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 5370 . T G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=2.956E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:136,88,0,0 0/0:.:94:93:1:1.06%:51,42,1,0 -Example1_ref 5371 . G . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:151,92,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 5372 . C . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:170,90,0,0 0/0:.:97:97:0:0%:54,43,0,0 -Example1_ref 5373 . T A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.2599E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:166,90,0,1 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 5374 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:169,89,0,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 5375 . T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:173,91,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 5376 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:172,97,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 5377 . G . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:174,92,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 5378 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:177,94,0,0 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 5379 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:173,93,0,0 0/0:.:103:103:0:0%:56,47,0,0 -Example1_ref 5380 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:183,91,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 5381 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:189,89,0,0 0/0:.:102:102:0:0%:56,46,0,0 -Example1_ref 5382 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:189,91,0,0 0/0:.:106:106:0:0%:60,46,0,0 -Example1_ref 5383 . G . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:188,88,0,0 0/0:.:105:105:0:0%:60,45,0,0 -Example1_ref 5384 . C . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:186,90,0,0 0/0:.:102:102:0:0%:60,42,0,0 -Example1_ref 5385 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:191,91,0,0 0/0:.:108:108:0:0%:60,48,0,0 -Example1_ref 5386 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:192,89,0,0 0/0:.:107:107:0:0%:60,47,0,0 -Example1_ref 5387 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:203,87,0,0 0/0:.:102:102:0:0%:61,41,0,0 -Example1_ref 5388 . C A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=7.2589E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:200,85,0,1 0/0:.:108:108:0:0%:63,45,0,0 -Example1_ref 5389 . T . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:198,83,0,0 0/0:.:102:102:0:0%:61,41,0,0 -Example1_ref 5390 . C . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:200,86,0,0 0/0:.:107:107:0:0%:62,45,0,0 -Example1_ref 5391 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:200,89,0,0 0/0:.:109:109:0:0%:63,46,0,0 -Example1_ref 5392 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:202,87,0,0 0/0:.:109:109:0:0%:62,47,0,0 -Example1_ref 5393 . C A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=2.7456E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:202,86,0,0 0/0:.:109:108:1:0.92%:63,45,0,1 -Example1_ref 5394 . A G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=7.302E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:204,90,1,0 0/0:.:109:109:0:0%:63,46,0,0 -Example1_ref 5395 . C A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.4065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:208,88,1,0 0/0:.:105:104:0:0%:62,42,0,0 -Example1_ref 5396 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:207,90,0,0 0/0:.:107:107:0:0%:61,46,0,0 -Example1_ref 5397 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:213,89,0,0 0/0:.:106:106:0:0%:62,44,0,0 -Example1_ref 5398 . A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:212,87,0,0 0/0:.:106:106:0:0%:62,44,0,0 -Example1_ref 5399 . T A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=2.5783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:218,90,0,0 0/0:.:107:106:1:0.93%:63,43,0,1 -Example1_ref 5400 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:214,93,0,0 0/0:.:105:105:0:0%:61,44,0,0 -Example1_ref 5401 . A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:0:0%:215,95,0,0 0/0:.:108:108:0:0%:62,46,0,0 -Example1_ref 5402 . C T . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=7.3709E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:217,96,1,0 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 5403 . A . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:220,98,0,0 0/0:.:113:113:0:0%:66,47,0,0 -Example1_ref 5404 . G T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=6.8928E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:217,99,0,0 0/0:.:113:111:2:1.77%:63,48,2,0 -Example1_ref 5405 . C . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:214,100,0,0 0/0:.:111:111:0:0%:64,47,0,0 -Example1_ref 5406 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:220,103,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 5407 . G GC . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=7.3576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:322:1:0.31%:217,105,1,0 0/0:.:116:116:0:0%:64,52,0,0 -Example1_ref 5408 . C . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:215,105,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 5409 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:221,106,0,0 0/0:.:117:117:0:0%:65,52,0,0 -Example1_ref 5410 . G GCTGTCACTTA . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=7.3288E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:320:1:0.31%:216,104,1,0 0/0:.:117:117:0:0%:65,52,0,0 -Example1_ref 5411 . T . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:221,101,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 5412 . T . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:220,105,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 5413 . G A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=2.7045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:214,107,0,0 0/0:.:119:118:1:0.84%:68,50,0,1 -Example1_ref 5414 . C . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:220,106,0,0 0/0:.:119:119:0:0%:70,49,0,0 -Example1_ref 5415 . T A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.2769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:317:1:0.31%:210,107,0,1 0/0:.:119:119:0:0%:69,50,0,0 -Example1_ref 5416 . C . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:218,109,0,0 0/0:.:116:116:0:0%:65,51,0,0 -Example1_ref 5417 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:219,107,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 5418 . G . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:227,108,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 5419 . G T . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=5.5132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:333:2:0.6%:224,109,2,0 0/0:.:116:116:0:0%:63,53,0,0 -Example1_ref 5420 . T . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:232,111,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 5421 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:228,112,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 5422 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:224,116,0,0 0/0:.:118:118:0:0%:65,53,0,0 -Example1_ref 5423 . A . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:233,115,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 5424 . A . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:229,113,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 5425 . G . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:231,115,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 5426 . C A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.4833E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:335:1:0.3%:226,109,0,1 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 5427 . C A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.467E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:222,116,1,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 5428 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:231,122,0,0 0/0:.:121:121:0:0%:68,53,0,0 -Example1_ref 5429 . A . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:227,122,0,0 0/0:.:125:125:0:0%:68,57,0,0 -Example1_ref 5430 . G . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:223,118,0,0 0/0:.:122:122:0:0%:65,57,0,0 -Example1_ref 5431 . C . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:230,119,0,0 0/0:.:120:120:0:0%:65,55,0,0 -Example1_ref 5432 . A G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=2.5745E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:228,121,0,0 0/0:.:121:120:1:0.83%:63,57,1,0 -Example1_ref 5433 . G A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=2.605E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:234,118,0,0 0/0:.:124:123:1:0.81%:68,55,1,0 -Example1_ref 5434 . G C . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=2.5527E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:230,123,0,0 0/0:.:122:120:1:0.83%:65,55,1,0 -Example1_ref 5435 . C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:231,122,0,0 0/0:.:121:121:0:0%:67,54,0,0 -Example1_ref 5436 . A . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:236,126,0,0 0/0:.:123:123:0:0%:67,56,0,0 -Example1_ref 5437 . A G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.3887E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:364:1:0.27%:239,125,1,0 0/0:.:129:129:0:0%:71,58,0,0 -Example1_ref 5438 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:242,125,0,0 0/0:.:127:127:0:0%:69,58,0,0 -Example1_ref 5439 . A T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.4E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:369:1:0.27%:244,125,0,1 0/0:.:130:130:0:0%:72,58,0,0 -Example1_ref 5440 . T A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=6.0063E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:365:2:0.54%:240,125,0,2 0/0:.:131:130:1:0.76%:72,58,0,1 -Example1_ref 5441 . C . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:244,129,0,0 0/0:.:134:134:0:0%:72,62,0,0 -Example1_ref 5442 . A . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:247,130,0,0 0/0:.:138:138:0:0%:72,66,0,0 -Example1_ref 5443 . G . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:246,130,0,0 0/0:.:137:137:0:0%:74,63,0,0 -Example1_ref 5444 . A . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:248,133,0,0 0/0:.:140:140:0:0%:74,66,0,0 -Example1_ref 5445 . C T . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=2.6901E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:245,130,0,0 0/0:.:138:137:1:0.72%:74,63,0,1 -Example1_ref 5446 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:247,134,0,0 0/0:.:138:138:0:0%:74,64,0,0 -Example1_ref 5447 . T C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=4.5114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:1:0.27%:243,131,1,0 0/0:.:131:130:1:0.76%:70,60,1,0 -Example1_ref 5448 . T C . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=2.6796E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:246,131,0,0 0/0:.:138:137:1:0.72%:71,66,1,0 -Example1_ref 5449 . G GA . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=4.6734E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:375:1:0.27%:241,134,1,0 0/0:.:140:138:1:0.72%:75,63,0,1 -Example1_ref 5450 . A G . PASS DP=525;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:384:1:0.26%:243,141,1,0 0/0:.:140:140:0:0%:75,65,0,0 -Example1_ref 5451 . A . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:245,143,0,0 0/0:.:135:134:0:0%:72,62,0,0 -Example1_ref 5452 . A G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.3664E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:242,143,0,1 0/0:.:138:138:0:0%:73,65,0,0 -Example1_ref 5453 . A G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=7.4423E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:1:0.26%:246,140,0,1 0/0:.:133:133:0:0%:71,62,0,0 -Example1_ref 5454 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:247,143,0,0 0/0:.:136:136:0:0%:73,63,0,0 -Example1_ref 5455 . C A . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=7.3713E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:256,144,0,1 0/0:.:143:143:0:0%:75,68,0,0 -Example1_ref 5456 . T A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.3606E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:395:1:0.25%:255,140,1,0 0/0:.:142:142:0:0%:75,67,0,0 -Example1_ref 5457 . C . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:254,142,0,0 0/0:.:142:142:0:0%:76,66,0,0 -Example1_ref 5458 . AAGG A . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=7.3481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:1:0.25%:252,146,1,0 0/0:.:144:144:0:0%:75,69,0,0 -Example1_ref 5459 . A . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:247,149,0,0 0/0:.:147:147:0:0%:77,70,0,0 -Example1_ref 5460 . G . PASS DP=551;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:251,153,0,0 0/0:.:147:147:0:0%:77,70,0,0 -Example1_ref 5461 . G . PASS DP=549;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:247,155,0,0 0/0:.:147:147:0:0%:76,71,0,0 -Example1_ref 5462 . AAG A . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=7.3309E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:249,151,1,0 0/0:.:146:146:0:0%:77,69,0,0 -Example1_ref 5463 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:245,151,0,0 0/0:.:146:146:0:0%:76,70,0,0 -Example1_ref 5464 . G . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:403:0:0%:250,153,0,0 0/0:.:144:144:0:0%:76,68,0,0 -Example1_ref 5465 . C . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:250,149,0,0 0/0:.:144:144:0:0%:76,68,0,0 -Example1_ref 5466 . G . PASS DP=551;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:252,153,0,0 0/0:.:146:146:0:0%:76,70,0,0 -Example1_ref 5467 . A . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:406:0:0%:256,150,0,0 0/0:.:149:149:0:0%:79,70,0,0 -Example1_ref 5468 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:249,150,0,0 0/0:.:151:151:0:0%:80,71,0,0 -Example1_ref 5469 . C A . PASS DP=557;SS=0;SSC=0;GPV=1E0;SPV=3.8649E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:403:3:0.74%:255,148,1,2 0/0:.:151:151:0:0%:80,71,0,0 -Example1_ref 5470 . A T . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=2.6821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:258,154,0,0 0/0:.:151:150:1:0.66%:78,72,1,0 -Example1_ref 5471 . A G . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=7.3016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:413:1:0.24%:255,158,1,0 0/0:.:153:153:0:0%:79,74,0,0 -Example1_ref 5472 . G . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:258,158,0,0 0/0:.:153:153:0:0%:79,74,0,0 -Example1_ref 5473 . G T . PASS DP=565;SS=0;SSC=0;GPV=1E0;SPV=7.2389E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:408:1:0.24%:252,156,1,0 0/0:.:156:156:0:0%:81,75,0,0 -Example1_ref 5474 . A . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:257,160,0,0 0/0:.:157:157:0:0%:82,75,0,0 -Example1_ref 5475 . C A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=2.7143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:255,153,0,0 0/0:.:152:151:1:0.66%:80,71,0,1 -Example1_ref 5476 . A . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:257,154,0,0 0/0:.:158:158:0:0%:83,75,0,0 -Example1_ref 5477 . C . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:259,152,0,0 0/0:.:155:155:0:0%:81,74,0,0 -Example1_ref 5478 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:0:0%:265,157,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 5479 . A . PASS DP=579;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:266,155,0,0 0/0:.:158:158:0:0%:83,75,0,0 -Example1_ref 5480 . A G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.2128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:426:1:0.23%:266,160,1,0 0/0:.:165:165:0:0%:82,83,0,0 -Example1_ref 5481 . CA C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=7.1939E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:1:0.24%:265,157,1,0 0/0:.:165:165:0:0%:83,82,0,0 -Example1_ref 5482 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:267,156,0,0 0/0:.:163:163:0:0%:83,80,0,0 -Example1_ref 5483 . A . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:266,162,0,0 0/0:.:165:165:0:0%:84,81,0,0 -Example1_ref 5484 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:268,162,0,0 0/0:.:168:168:0:0%:85,83,0,0 -Example1_ref 5485 . G . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:262,172,0,0 0/0:.:166:166:0:0%:83,83,0,0 -Example1_ref 5486 . C . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:264,172,0,0 0/0:.:168:168:0:0%:85,83,0,0 -Example1_ref 5487 . A . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:269,176,0,0 0/0:.:172:172:0:0%:88,84,0,0 -Example1_ref 5488 . G T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=2.7597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:270,176,0,0 0/0:.:170:169:1:0.59%:85,84,1,0 -Example1_ref 5489 . T TTA . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=7.2285E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:1:0.22%:271,174,1,0 0/0:.:171:171:0:0%:86,85,0,0 -Example1_ref 5490 . G T . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=7.2437E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:430:1:0.23%:256,174,1,0 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 5491 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:263,172,0,0 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 5492 . A . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:269,175,0,0 0/0:.:169:169:0:0%:85,84,0,0 -Example1_ref 5493 . G T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=2.7575E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:263,173,0,0 0/0:.:166:165:1:0.6%:82,83,1,0 -Example1_ref 5494 . T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:268,170,0,0 0/0:.:162:162:0:0%:82,80,0,0 -Example1_ref 5495 . C A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.2589E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:428:1:0.23%:260,168,0,1 0/0:.:162:162:0:0%:79,83,0,0 -Example1_ref 5496 . A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:266,178,0,0 0/0:.:168:168:0:0%:81,87,0,0 -Example1_ref 5497 . G . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:275,178,0,0 0/0:.:166:166:0:0%:81,85,0,0 -Example1_ref 5498 . T . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:275,175,0,0 0/0:.:169:169:0:0%:83,86,0,0 -Example1_ref 5499 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:274,176,0,0 0/0:.:166:166:0:0%:81,85,0,0 -Example1_ref 5500 . C A . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=5.3014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:435:2:0.46%:267,168,0,2 0/0:.:163:163:0:0%:80,83,0,0 -Example1_ref 5501 . A . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:273,181,0,0 0/0:.:167:167:0:0%:79,88,0,0 -Example1_ref 5502 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:0:0%:272,178,0,0 0/0:.:165:165:0:0%:80,85,0,0 -Example1_ref 5503 . A . PASS DP=615;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:272,177,0,0 0/0:.:166:166:0:0%:81,85,0,0 -Example1_ref 5504 . G . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:264,180,0,0 0/0:.:165:165:0:0%:80,85,0,0 -Example1_ref 5505 . C A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=7.3422E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:265,176,0,1 0/0:.:160:160:0:0%:79,81,0,0 -Example1_ref 5506 . T A . PASS DP=573;SS=0;SSC=0;GPV=1E0;SPV=7.3427E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:419:1:0.24%:254,165,1,0 0/0:.:152:152:0:0%:76,76,0,0 -Example1_ref 5507 . C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:427:0:0%:263,164,0,0 0/0:.:158:158:0:0%:80,78,0,0 -Example1_ref 5508 . C T . PASS DP=607;SS=0;SSC=0;GPV=1E0;SPV=7.3311E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:269,175,1,0 0/0:.:162:162:0:0%:79,83,0,0 -Example1_ref 5509 . G A . PASS DP=623;SS=0;SSC=0;GPV=1E0;SPV=2.7127E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:272,182,0,0 0/0:.:169:168:1:0.59%:84,84,0,1 -Example1_ref 5510 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:274,180,0,0 0/0:.:168:168:0:0%:84,84,0,0 -Example1_ref 5511 . A . PASS DP=615;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:267,182,0,0 0/0:.:166:166:0:0%:80,86,0,0 -Example1_ref 5512 . G . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:268,180,0,0 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 5513 . G . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:261,180,0,0 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 5514 . A T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.3366E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:265,183,1,0 0/0:.:163:163:0:0%:80,83,0,0 -Example1_ref 5515 . A T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=7.329E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:264,185,1,0 0/0:.:164:164:0:0%:79,85,0,0 -Example1_ref 5516 . A . PASS DP=625;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:272,186,0,0 0/0:.:167:167:0:0%:83,84,0,0 -Example1_ref 5517 . C A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=2.635E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:269,181,0,0 0/0:.:162:160:1:0.62%:81,79,1,0 -Example1_ref 5518 . T C . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=2.6131E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:260,181,0,0 0/0:.:156:155:1:0.64%:76,79,1,0 -Example1_ref 5519 . T . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:263,179,0,0 0/0:.:161:161:0:0%:77,84,0,0 -Example1_ref 5520 . G A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=7.3026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:259,184,0,1 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 5521 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:0:0%:259,183,0,0 0/0:.:165:165:0:0%:79,86,0,0 -Example1_ref 5522 . T C . PASS DP=607;SS=0;SSC=0;GPV=1E0;SPV=2.7183E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:260,182,0,0 0/0:.:165:164:1:0.61%:80,84,1,0 -Example1_ref 5523 . A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:257,185,0,0 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 5524 . G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:462:0:0%:254,208,0,0 0/0:.:171:171:0:0%:79,92,0,0 -Example1_ref 5525 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:262,210,0,0 0/0:.:172:171:0:0%:82,89,0,0 -Example1_ref 5526 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:260,207,0,0 0/0:.:173:172:0:0%:81,91,0,0 -Example1_ref 5527 . G A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=4.6503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:1:0.22%:252,205,0,1 0/0:.:169:167:1:0.6%:78,89,0,1 -Example1_ref 5528 . C A . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.3836E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:1:0.22%:258,201,0,1 0/0:.:164:163:0:0%:77,86,0,0 -Example1_ref 5529 . A AG . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=7.4028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:267,208,0,1 0/0:.:168:167:0:0%:80,87,0,0 -Example1_ref 5530 . A T . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=5.2638E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:469:2:0.42%:262,207,1,1 0/0:.:178:178:0:0%:85,93,0,0 -Example1_ref 5531 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:470:0:0%:270,200,0,0 0/0:.:174:174:0:0%:82,92,0,0 -Example1_ref 5532 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:264,232,0,0 0/0:.:182:182:0:0%:83,99,0,0 -Example1_ref 5533 . A G . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=2.7246E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:264,238,0,0 0/0:.:188:187:1:0.53%:83,104,1,0 -Example1_ref 5534 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:266,237,0,0 0/0:.:187:187:0:0%:82,105,0,0 -Example1_ref 5535 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:264,237,0,0 0/0:.:189:189:0:0%:85,104,0,0 -Example1_ref 5536 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:262,228,0,0 0/0:.:186:186:0:0%:83,103,0,0 -Example1_ref 5537 . C A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=2.7206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:257,238,0,0 0/0:.:185:184:1:0.54%:80,104,1,0 -Example1_ref 5538 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:262,232,0,0 0/0:.:180:180:0:0%:80,100,0,0 -Example1_ref 5539 . G T . PASS DP=703;SS=0;SSC=0;GPV=1E0;SPV=2.7312E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:278,233,0,0 0/0:.:192:191:1:0.52%:89,102,1,0 -Example1_ref 5540 . T A . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=7.151E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:1:0.2%:276,225,1,0 0/0:.:200:200:0:0%:95,105,0,0 -Example1_ref 5541 . C . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:275,226,0,0 0/0:.:191:191:0:0%:92,99,0,0 -Example1_ref 5542 . C . PASS DP=713;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:272,242,0,0 0/0:.:199:199:0:0%:92,107,0,0 -Example1_ref 5543 . A . PASS DP=725;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:523:0:0%:280,243,0,0 0/0:.:202:202:0:0%:95,107,0,0 -Example1_ref 5544 . G T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=4.6783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:520:1:0.19%:279,241,1,0 0/0:.:193:192:1:0.52%:90,102,1,0 -Example1_ref 5545 . G . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:517:0:0%:275,242,0,0 0/0:.:197:196:0:0%:89,107,0,0 -Example1_ref 5546 . AT A . PASS DP=717;SS=0;SSC=0;GPV=1E0;SPV=6.2134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:517:2:0.39%:268,249,2,0 0/0:.:198:197:1:0.51%:90,107,1,0 -Example1_ref 5547 . T G . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=7.2294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:263,237,0,1 0/0:.:192:192:0:0%:88,104,0,0 -Example1_ref 5548 . T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:264,233,0,0 0/0:.:179:179:0:0%:85,94,0,0 -Example1_ref 5549 . A T . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=7.3285E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:1:0.2%:262,239,1,0 0/0:.:183:183:0:0%:87,96,0,0 -Example1_ref 5550 . T G . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=7.3521E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:1:0.2%:262,234,1,0 0/0:.:179:179:0:0%:86,93,0,0 -Example1_ref 5551 . G GTCTGTC . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=7.3128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:260,237,1,0 0/0:.:184:183:0:0%:85,98,0,0 -Example1_ref 5552 . T . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:262,222,0,0 0/0:.:183:182:0:0%:85,97,0,0 -Example1_ref 5553 . C . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:255,231,0,0 0/0:.:172:171:0:0%:83,88,0,0 -Example1_ref 5554 . A . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:254,236,0,0 0/0:.:175:175:0:0%:80,95,0,0 -Example1_ref 5555 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:257,237,0,0 0/0:.:182:182:0:0%:85,97,0,0 -Example1_ref 5556 . C . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:254,238,0,0 0/0:.:180:180:0:0%:84,96,0,0 -Example1_ref 5557 . A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:489:0:0%:250,239,0,0 0/0:.:178:178:0:0%:84,94,0,0 -Example1_ref 5558 . A G . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=7.3094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:488:1:0.2%:246,242,0,1 0/0:.:180:180:0:0%:83,97,0,0 -Example1_ref 5559 . A C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=7.4018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:245,244,1,0 0/0:.:172:172:0:0%:80,92,0,0 -Example1_ref 5560 . GA G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=2.6923E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:231,244,0,0 0/0:.:175:174:1:0.57%:79,95,1,0 -Example1_ref 5561 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:236,244,0,0 0/0:.:176:176:0:0%:80,96,0,0 -Example1_ref 5562 . A . PASS DP=637;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:222,241,0,0 0/0:.:174:174:0:0%:81,93,0,0 -Example1_ref 5563 . A . PASS DP=639;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:223,241,0,0 0/0:.:175:175:0:0%:79,96,0,0 -Example1_ref 5564 . T . PASS DP=635;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:221,240,0,0 0/0:.:174:174:0:0%:83,91,0,0 -Example1_ref 5565 . C . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:221,243,0,0 0/0:.:176:176:0:0%:82,94,0,0 -Example1_ref 5566 . G . PASS DP=635;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:216,243,0,0 0/0:.:176:176:0:0%:79,97,0,0 -Example1_ref 5567 . T . PASS DP=629;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:219,235,0,0 0/0:.:175:175:0:0%:83,92,0,0 -Example1_ref 5568 . G A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=4.8307E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:1:0.23%:203,234,1,0 0/0:.:171:170:1:0.58%:77,93,0,1 -Example1_ref 5569 . C A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=4.6621E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:447:1:0.22%:211,236,0,1 0/0:.:166:164:1:0.61%:77,87,0,1 -Example1_ref 5570 . C A . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=4.8118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:1:0.22%:200,245,0,1 0/0:.:173:172:1:0.58%:77,95,1,0 -Example1_ref 5571 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:209,246,0,0 0/0:.:171:171:0:0%:79,92,0,0 -Example1_ref 5572 . T C . PASS DP=615;SS=0;SSC=0;GPV=1E0;SPV=2.7154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:205,243,0,0 0/0:.:167:166:1:0.6%:75,91,0,1 -Example1_ref 5573 . C . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:207,241,0,0 0/0:.:169:169:0:0%:74,95,0,0 -Example1_ref 5574 . G T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=4.6629E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:455:1:0.22%:206,249,1,0 0/0:.:168:167:1:0.6%:71,96,1,0 -Example1_ref 5575 . A . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:203,252,0,0 0/0:.:167:167:0:0%:74,93,0,0 -Example1_ref 5576 . T . PASS DP=607;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:197,250,0,0 0/0:.:160:160:0:0%:69,91,0,0 -Example1_ref 5577 . T C . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=2.6591E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:195,255,0,0 0/0:.:163:162:1:0.61%:72,90,0,1 -Example1_ref 5578 . G . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:192,257,0,0 0/0:.:162:162:0:0%:69,93,0,0 -Example1_ref 5579 . C T . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=4.7185E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:433:1:0.23%:191,242,0,1 0/0:.:163:162:1:0.61%:70,92,1,0 -Example1_ref 5580 . G A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=2.6699E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:197,256,0,0 0/0:.:165:164:1:0.61%:72,92,0,1 -Example1_ref 5581 . A . PASS DP=615;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:194,257,0,0 0/0:.:164:164:0:0%:71,93,0,0 -Example1_ref 5582 . G . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:191,257,0,0 0/0:.:165:165:0:0%:72,93,0,0 -Example1_ref 5583 . A . PASS DP=615;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:192,257,0,0 0/0:.:166:166:0:0%:71,95,0,0 -Example1_ref 5584 . C A . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.3039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:194,252,0,1 0/0:.:165:165:0:0%:72,93,0,0 -Example1_ref 5585 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:192,256,0,0 0/0:.:164:164:0:0%:71,93,0,0 -Example1_ref 5586 . A AAT . PASS DP=623;SS=0;SSC=0;GPV=1E0;SPV=2.6485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:196,262,0,0 0/0:.:165:164:1:0.61%:69,95,1,0 -Example1_ref 5587 . G . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:191,258,0,0 0/0:.:162:162:0:0%:66,96,0,0 -Example1_ref 5588 . G . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:197,262,0,0 0/0:.:167:167:0:0%:71,96,0,0 -Example1_ref 5589 . T TC . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=2.6817E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:192,261,0,0 0/0:.:166:165:1:0.6%:71,94,1,0 -Example1_ref 5590 . T . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:192,259,0,0 0/0:.:168:167:0:0%:73,94,0,0 -Example1_ref 5591 . G T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.3052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:449:1:0.22%:190,259,1,0 0/0:.:166:166:0:0%:71,95,0,0 -Example1_ref 5592 . T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:191,258,0,0 0/0:.:163:163:0:0%:72,91,0,0 -Example1_ref 5593 . G . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:191,262,0,0 0/0:.:164:164:0:0%:70,94,0,0 -Example1_ref 5594 . A . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:189,259,0,0 0/0:.:165:165:0:0%:71,94,0,0 -Example1_ref 5595 . A . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:183,260,0,0 0/0:.:165:165:0:0%:71,94,0,0 -Example1_ref 5596 . G . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:185,253,0,0 0/0:.:163:163:0:0%:70,93,0,0 -Example1_ref 5597 . C . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:190,250,0,0 0/0:.:160:160:0:0%:71,89,0,0 -Example1_ref 5598 . A . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:188,253,0,0 0/0:.:162:162:0:0%:71,91,0,0 -Example1_ref 5599 . G T . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=2.6825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:185,246,0,0 0/0:.:158:157:1:0.63%:69,88,1,0 -Example1_ref 5600 . C T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=2.7119E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:184,246,0,0 0/0:.:160:159:1:0.62%:72,87,0,1 -Example1_ref 5601 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:183,257,0,0 0/0:.:162:162:0:0%:71,91,0,0 -Example1_ref 5602 . G . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:184,254,0,0 0/0:.:159:159:0:0%:70,89,0,0 -Example1_ref 5603 . G . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:181,256,0,0 0/0:.:161:161:0:0%:69,92,0,0 -Example1_ref 5604 . A . PASS DP=607;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:185,260,0,0 0/0:.:162:162:0:0%:68,94,0,0 -Example1_ref 5605 . C . PASS DP=587;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:183,248,0,0 0/0:.:156:156:0:0%:65,91,0,0 -Example1_ref 5606 . T . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:179,254,0,0 0/0:.:156:156:0:0%:66,90,0,0 -Example1_ref 5607 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:183,255,0,0 0/0:.:158:158:0:0%:66,92,0,0 -Example1_ref 5608 . C . PASS DP=579;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:174,253,0,0 0/0:.:152:152:0:0%:65,87,0,0 -Example1_ref 5609 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:173,259,0,0 0/0:.:156:156:0:0%:65,91,0,0 -Example1_ref 5610 . G . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:176,256,0,0 0/0:.:154:154:0:0%:64,90,0,0 -Example1_ref 5611 . C . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:170,250,0,0 0/0:.:156:156:0:0%:65,91,0,0 -Example1_ref 5612 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:171,253,0,0 0/0:.:158:158:0:0%:65,93,0,0 -Example1_ref 5613 . A C . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.2852E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:423:1:0.24%:169,254,0,1 0/0:.:158:158:0:0%:65,93,0,0 -Example1_ref 5614 . G A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=4.6797E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:420:1:0.24%:171,249,0,1 0/0:.:157:155:1:0.64%:64,91,0,1 -Example1_ref 5615 . G . PASS DP=573;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:419:0:0%:168,251,0,0 0/0:.:154:154:0:0%:63,91,0,0 -Example1_ref 5616 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:168,255,0,0 0/0:.:159:159:0:0%:66,93,0,0 -Example1_ref 5617 . A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:169,254,0,0 0/0:.:159:159:0:0%:65,94,0,0 -Example1_ref 5618 . T TCTG . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.2997E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:165,253,1,0 0/0:.:155:155:0:0%:65,90,0,0 -Example1_ref 5619 . T . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:164,253,0,0 0/0:.:155:155:0:0%:65,90,0,0 -Example1_ref 5620 . G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:168,252,0,0 0/0:.:154:154:0:0%:66,88,0,0 -Example1_ref 5621 . C . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:167,251,0,0 0/0:.:156:156:0:0%:67,89,0,0 -Example1_ref 5622 . A G . PASS DP=579;SS=0;SSC=0;GPV=1E0;SPV=7.3057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:1:0.24%:168,254,1,0 0/0:.:156:156:0:0%:66,90,0,0 -Example1_ref 5623 . T . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:413:0:0%:158,255,0,0 0/0:.:150:150:0:0%:62,88,0,0 -Example1_ref 5624 . T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:164,250,0,0 0/0:.:152:152:0:0%:62,90,0,0 -Example1_ref 5625 . A . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:165,250,0,0 0/0:.:152:152:0:0%:62,90,0,0 -Example1_ref 5626 . A G . PASS DP=575;SS=0;SSC=0;GPV=1E0;SPV=7.3171E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:419:1:0.24%:167,252,1,0 0/0:.:154:154:0:0%:63,91,0,0 -Example1_ref 5627 . C . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:406:0:0%:157,249,0,0 0/0:.:149:149:0:0%:60,89,0,0 -Example1_ref 5628 . A . PASS DP=559;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:158,253,0,0 0/0:.:148:148:0:0%:59,89,0,0 -Example1_ref 5629 . C CCTGTCTCTT . PASS DP=549;SS=0;SSC=0;GPV=1E0;SPV=7.377E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:404:1:0.25%:155,249,1,0 0/0:.:144:144:0:0%:55,89,0,0 -Example1_ref 5630 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:154,246,0,0 0/0:.:136:136:0:0%:55,81,0,0 -Example1_ref 5631 . G A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=2.5379E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:394:394:0:0%:152,242,0,0 0/0:.:134:133:1:0.75%:54,79,1,0 -Example1_ref 5632 . C . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:155,247,0,0 0/0:.:136:136:0:0%:57,79,0,0 -Example1_ref 5633 . A ATCTGTCTC . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=7.486E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:401:1:0.25%:152,249,1,0 0/0:.:135:135:0:0%:55,80,0,0 -Example1_ref 5634 . T . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:152,241,0,0 0/0:.:135:135:0:0%:56,79,0,0 -Example1_ref 5635 . T C . PASS DP=529;SS=0;SSC=0;GPV=1E0;SPV=7.4669E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:395:394:1:0.25%:152,242,1,0 0/0:.:134:134:0:0%:55,79,0,0 -Example1_ref 5636 . A . PASS DP=533;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:398:0:0%:154,244,0,0 0/0:.:135:135:0:0%:56,79,0,0 -Example1_ref 5637 . C . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:151,236,0,0 0/0:.:132:132:0:0%:54,78,0,0 -Example1_ref 5638 . T . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:149,237,0,0 0/0:.:130:130:0:0%:56,74,0,0 -Example1_ref 5639 . C A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=7.4759E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:387:1:0.26%:146,241,0,1 0/0:.:131:131:0:0%:55,76,0,0 -Example1_ref 5640 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:149,238,0,0 0/0:.:132:132:0:0%:55,77,0,0 -Example1_ref 5641 . G A . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=7.4951E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:151,234,0,1 0/0:.:129:129:0:0%:53,76,0,0 -Example1_ref 5642 . A . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:149,236,0,0 0/0:.:130:130:0:0%:53,77,0,0 -Example1_ref 5643 . A G . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=7.4806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:385:1:0.26%:152,233,0,1 0/0:.:130:130:0:0%:55,75,0,0 -Example1_ref 5644 . T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:150,232,0,0 0/0:.:126:126:0:0%:52,74,0,0 -Example1_ref 5645 . T . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:0:0%:145,229,0,0 0/0:.:120:120:0:0%:50,70,0,0 -Example1_ref 5646 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:378:0:0%:145,233,0,0 0/0:.:120:120:0:0%:51,69,0,0 -Example1_ref 5647 . A . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:146,233,0,0 0/0:.:122:122:0:0%:51,71,0,0 -Example1_ref 5648 . C . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:380:0:0%:145,235,0,0 0/0:.:120:120:0:0%:50,70,0,0 -Example1_ref 5649 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:144,231,0,0 0/0:.:119:118:0:0%:48,70,0,0 -Example1_ref 5650 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:148,227,0,0 0/0:.:117:117:0:0%:48,69,0,0 -Example1_ref 5651 . A . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:148,228,0,0 0/0:.:117:117:0:0%:47,70,0,0 -Example1_ref 5652 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:145,226,0,0 0/0:.:115:115:0:0%:49,66,0,0 -Example1_ref 5653 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:149,225,0,0 0/0:.:116:116:0:0%:48,68,0,0 -Example1_ref 5654 . T A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.6033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:367:1:0.27%:145,222,1,0 0/0:.:116:116:0:0%:48,68,0,0 -Example1_ref 5655 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:147,225,0,0 0/0:.:118:118:0:0%:48,70,0,0 -Example1_ref 5656 . T G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.6569E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:146,219,0,1 0/0:.:112:112:0:0%:45,67,0,0 -Example1_ref 5657 . T G . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5636E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:138,218,1,0 0/0:.:115:115:0:0%:45,70,0,0 -Example1_ref 5658 . C A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=5.7479E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:359:2:0.55%:136,223,1,1 0/0:.:115:115:0:0%:45,70,0,0 -Example1_ref 5659 . G A . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=7.5914E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:352:1:0.28%:135,217,0,1 0/0:.:112:112:0:0%:45,67,0,0 -Example1_ref 5660 . G A . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=7.5636E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:356:1:0.28%:133,223,1,0 0/0:.:115:115:0:0%:45,70,0,0 -Example1_ref 5661 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:140,220,0,0 0/0:.:116:116:0:0%:48,68,0,0 -Example1_ref 5662 . G T . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=2.3779E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:138,221,0,0 0/0:.:112:111:1:0.89%:45,66,1,0 -Example1_ref 5663 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:136,218,0,0 0/0:.:112:112:0:0%:45,67,0,0 -Example1_ref 5664 . T . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:138,218,0,0 0/0:.:111:111:0:0%:44,67,0,0 -Example1_ref 5665 . A AC . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=7.6017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:133,221,1,0 0/0:.:112:112:0:0%:45,67,0,0 -Example1_ref 5666 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:141,221,0,0 0/0:.:113:113:0:0%:45,68,0,0 -Example1_ref 5667 . C A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=5.7362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:345:2:0.58%:128,217,0,2 0/0:.:111:111:0:0%:44,67,0,0 -Example1_ref 5668 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:130,221,0,0 0/0:.:113:113:0:0%:44,69,0,0 -Example1_ref 5669 . T G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=5.7362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:345:2:0.58%:127,218,0,2 0/0:.:111:111:0:0%:41,70,0,0 -Example1_ref 5670 . A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:125,217,0,0 0/0:.:103:103:0:0%:41,62,0,0 -Example1_ref 5671 . G T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=2.3744E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:121,213,0,0 0/0:.:104:103:1:0.96%:41,62,1,0 -Example1_ref 5672 . G A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=7.6498E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:117,214,1,0 0/0:.:102:102:0:0%:40,62,0,0 -Example1_ref 5673 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:117,211,0,0 0/0:.:99:99:0:0%:39,60,0,0 -Example1_ref 5674 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:113,210,0,0 0/0:.:95:95:0:0%:38,57,0,0 -Example1_ref 5675 . C CT . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=5.9067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:304:2:0.65%:111,193,2,0 0/0:.:92:92:0:0%:38,54,0,0 -Example1_ref 5676 . G . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:113,191,0,0 0/0:.:93:93:0:0%:37,56,0,0 -Example1_ref 5677 . T . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:0:0%:113,188,0,0 0/0:.:91:91:0:0%:36,55,0,0 -Example1_ref 5678 . T G . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=7.6441E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:113,191,0,1 0/0:.:94:94:0:0%:36,58,0,0 -Example1_ref 5679 . A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:112,192,0,0 0/0:.:95:95:0:0%:37,58,0,0 -Example1_ref 5680 . C A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=7.6081E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:110,188,0,1 0/0:.:94:94:0:0%:37,57,0,0 -Example1_ref 5681 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:110,196,0,0 0/0:.:93:93:0:0%:35,58,0,0 -Example1_ref 5682 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:107,196,0,0 0/0:.:95:95:0:0%:37,58,0,0 -Example1_ref 5683 . G GA . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=4.2549E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:103,194,0,1 0/0:.:95:94:1:1.05%:37,57,0,1 -Example1_ref 5684 . A T . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=7.5969E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:102,191,1,0 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 5685 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:101,192,0,0 0/0:.:91:91:0:0%:34,57,0,0 -Example1_ref 5686 . A G . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=7.5969E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:100,193,1,0 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 5687 . A . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:97,193,0,0 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 5688 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:99,194,0,0 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 5689 . G A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=7.5726E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:97,189,0,1 0/0:.:92:92:0:0%:35,57,0,0 -Example1_ref 5690 . G T . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=2.4274E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:95,192,0,0 0/0:.:92:91:1:1.09%:35,56,0,1 -Example1_ref 5691 . A . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:97,193,0,0 0/0:.:95:95:0:0%:37,58,0,0 -Example1_ref 5692 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:99,194,0,0 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 5693 . T C . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=4.2918E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:100,190,0,1 0/0:.:94:93:1:1.06%:36,57,0,1 -Example1_ref 5694 . A . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:100,190,0,0 0/0:.:95:95:0:0%:37,58,0,0 -Example1_ref 5695 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:99,186,0,0 0/0:.:94:94:0:0%:37,57,0,0 -Example1_ref 5696 . A G . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=7.5462E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:101,184,0,1 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 5697 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:96,188,0,0 0/0:.:94:94:0:0%:36,58,0,0 -Example1_ref 5698 . T . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:95,185,0,0 0/0:.:91:91:0:0%:35,56,0,0 -Example1_ref 5699 . T C . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=2.4661E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:94,184,0,0 0/0:.:91:90:1:1.1%:33,57,0,1 -Example1_ref 5700 . A . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:93,189,0,0 0/0:.:93:93:0:0%:35,58,0,0 -Example1_ref 5701 . C A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=7.5467E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:282:1:0.35%:92,190,0,1 0/0:.:92:92:0:0%:34,58,0,0 -Example1_ref 5702 . A . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:92,189,0,0 0/0:.:92:92:0:0%:35,57,0,0 -Example1_ref 5703 . A . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:87,191,0,0 0/0:.:93:93:0:0%:35,58,0,0 -Example1_ref 5704 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:85,182,0,0 0/0:.:91:91:0:0%:34,57,0,0 -Example1_ref 5705 . G GCTGTCTCT . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=7.4667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:1:0.36%:92,187,1,0 0/0:.:95:95:0:0%:37,58,0,0 -Example1_ref 5706 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:96,183,0,0 0/0:.:91:91:0:0%:35,56,0,0 -Example1_ref 5707 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:95,184,0,0 0/0:.:92:92:0:0%:35,57,0,0 -Example1_ref 5708 . T C . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=7.6087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:279:1:0.36%:94,185,1,0 0/0:.:88:88:0:0%:32,56,0,0 -Example1_ref 5709 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:95,184,0,0 0/0:.:89:89:0:0%:34,55,0,0 -Example1_ref 5710 . G . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:94,183,0,0 0/0:.:86:86:0:0%:33,53,0,0 -Example1_ref 5711 . C . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:93,181,0,0 0/0:.:83:83:0:0%:33,50,0,0 -Example1_ref 5712 . A G . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=7.6751E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:91,182,1,0 0/0:.:83:83:0:0%:33,50,0,0 -Example1_ref 5713 . T . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:0:0%:102,176,0,0 0/0:.:82:82:0:0%:34,48,0,0 -Example1_ref 5714 . C CTGTCT . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=4.1961E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:101,148,0,1 0/0:.:78:77:1:1.28%:34,43,1,0 -Example1_ref 5715 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:102,155,0,0 0/0:.:81:81:0:0%:34,47,0,0 -Example1_ref 5716 . T . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:102,147,0,0 0/0:.:78:78:0:0%:34,44,0,0 -Example1_ref 5717 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:104,155,0,0 0/0:.:81:81:0:0%:36,45,0,0 -Example1_ref 5718 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:103,155,0,0 0/0:.:83:83:0:0%:37,46,0,0 -Example1_ref 5719 . T . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:99,152,0,0 0/0:.:82:82:0:0%:36,46,0,0 -Example1_ref 5720 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:98,149,0,0 0/0:.:76:76:0:0%:33,43,0,0 -Example1_ref 5721 . C CCTGT . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=4.0504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:239:1:0.42%:92,147,1,0 0/0:.:73:70:1:1.41%:28,42,1,0 -Example1_ref 5722 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:93,112,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 5723 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:93,112,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 5724 . C A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=7.7912E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:91,102,0,1 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 5725 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:90,116,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 5726 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:96,115,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 5727 . A G . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=7.6895E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:95,117,0,1 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 5728 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:0:0%:94,119,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 5729 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:84,117,0,0 0/0:.:60:60:0:0%:25,35,0,0 -Example1_ref 5730 . T C . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=7.7186E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:85,117,0,1 0/0:.:60:60:0:0%:25,35,0,0 -Example1_ref 5731 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:84,118,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 5732 . T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:88,111,0,0 0/0:.:60:60:0:0%:26,34,0,0 -Example1_ref 5733 . C T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=7.6245E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:82,116,0,1 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 5734 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:80,122,0,0 0/0:.:64:64:0:0%:26,38,0,0 -Example1_ref 5735 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:84,121,0,0 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 5736 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:85,121,0,0 0/0:.:64:64:0:0%:26,38,0,0 -Example1_ref 5737 . G . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:84,118,0,0 0/0:.:65:65:0:0%:26,39,0,0 -Example1_ref 5738 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:84,123,0,0 0/0:.:64:64:0:0%:26,38,0,0 -Example1_ref 5739 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:84,119,0,0 0/0:.:65:65:0:0%:26,39,0,0 -Example1_ref 5740 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:85,122,0,0 0/0:.:64:64:0:0%:26,38,0,0 -Example1_ref 5741 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:81,118,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 5742 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:0:0%:84,119,0,0 0/0:.:64:64:0:0%:27,37,0,0 -Example1_ref 5743 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:85,115,0,0 0/0:.:61:61:0:0%:27,34,0,0 -Example1_ref 5744 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:83,116,0,0 0/0:.:61:61:0:0%:26,35,0,0 -Example1_ref 5745 . C A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=7.7075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:81,113,0,1 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 5746 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:81,111,0,0 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 5747 . C A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=5.8911E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:190:2:1.04%:81,109,1,1 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 5748 . A G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=7.5502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:187:1:0.53%:79,108,1,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 5749 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:81,106,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 5750 . C A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:78,103,1,0 0/0:.:62:62:0:0%:27,35,0,0 -Example1_ref 5751 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:81,101,0,0 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 5752 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:76,98,0,0 0/0:.:59:59:0:0%:27,32,0,0 -Example1_ref 5753 . C A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=7.4274E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:77,101,0,1 0/0:.:62:62:0:0%:27,35,0,0 -Example1_ref 5754 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:75,104,0,0 0/0:.:64:64:0:0%:27,37,0,0 -Example1_ref 5755 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:83,104,0,0 0/0:.:65:65:0:0%:27,38,0,0 -Example1_ref 5756 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:82,106,0,0 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 5757 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:81,107,0,0 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 5758 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:84,106,0,0 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 5759 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:83,106,0,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 5760 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:81,105,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 5761 . G GT . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=7.2691E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:1:0.55%:75,105,0,1 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 5762 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:79,105,0,0 0/0:.:66:66:0:0%:26,40,0,0 -Example1_ref 5763 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:79,103,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 5764 . A G . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=7.3437E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:187:1:0.53%:82,105,1,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 5765 . A AGAGACAG . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.3518E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:185:1:0.54%:82,103,0,1 0/0:.:67:67:0:0%:27,40,0,0 -Example1_ref 5766 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:86,106,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 5767 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:86,101,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 5768 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:0:0%:87,102,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 5769 . T G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=7.3413E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:184:1:0.54%:83,101,0,1 0/0:.:67:67:0:0%:30,37,0,0 -Example1_ref 5770 . G C . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=7.3684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:80,101,1,0 0/0:.:65:65:0:0%:28,37,0,0 -Example1_ref 5771 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:81,102,0,0 0/0:.:64:64:0:0%:27,37,0,0 -Example1_ref 5772 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:79,100,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 5773 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:86,103,0,0 0/0:.:67:67:0:0%:29,38,0,0 -Example1_ref 5774 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:87,100,0,0 0/0:.:68:67:0:0%:30,37,0,0 -Example1_ref 5775 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:0:0%:83,98,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 5776 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:83,97,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 5777 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:83,99,0,0 0/0:.:67:67:0:0%:30,37,0,0 -Example1_ref 5778 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 5779 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:82,94,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 5780 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:82,94,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 5781 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:80,91,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 5782 . C . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:80,88,0,0 0/0:.:67:67:0:0%:29,38,0,0 -Example1_ref 5783 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:80,90,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 5784 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:87,91,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5785 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:87,90,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5786 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:87,92,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5787 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:86,93,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 5788 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:87,91,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5789 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:87,89,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 5790 . TA T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=7.102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:85,88,1,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5791 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:85,87,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5792 . C CCTGTCTCTTAT . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.1849E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:83,87,1,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 5793 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:85,84,0,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 5794 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:83,83,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 5795 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:84,83,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 5796 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:85,83,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 5797 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 5798 . C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:87,80,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 5799 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 5800 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:85,83,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 5801 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 5802 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 5803 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:85,81,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 5804 . A T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=2.9752E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:88,82,0,0 0/0:.:72:71:1:1.39%:34,37,0,1 -Example1_ref 5805 . G A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=6.9748E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:82,83,1,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 5806 . G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:81,81,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5807 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:86,76,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 5808 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 5809 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:86,75,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 5810 . G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 5811 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:83,78,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 5812 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 5813 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:87,76,0,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 5814 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:89,75,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 5815 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:89,76,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 5816 . T A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=3.0172E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:70:69:1:1.43%:35,34,0,1 -Example1_ref 5817 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:84,76,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 5818 . G T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=7.0614E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:83,77,0,1 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 5819 . A G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=6.9869E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:85,74,0,1 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 5820 . T . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:84,73,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 5821 . G . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 5822 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 5823 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:84,73,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 5824 . G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:88,73,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 5825 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:85,73,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 5826 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:85,71,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 5827 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 5828 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:82,74,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 5829 . G GAC . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.0089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:84,72,0,1 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 5830 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:80,74,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 5831 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:81,75,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 5832 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:81,74,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 5833 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:81,75,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 5834 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:80,74,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 5835 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:83,73,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 5836 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 5837 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 5838 . C T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=6.9432E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:85,73,1,0 0/0:.:70:70:0:0%:33,37,0,0 -Example1_ref 5839 . T . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:86,73,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 5840 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:84,72,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 5841 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:85,72,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 5842 . A C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=3.018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:67:66:1:1.49%:31,35,0,1 -Example1_ref 5843 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 5844 . C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:81,73,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 5845 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:83,74,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 5846 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 5847 . C A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=5.1677E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:150:1:0.66%:78,72,0,1 0/0:.:66:65:1:1.52%:31,34,0,1 -Example1_ref 5848 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:83,69,0,0 0/0:.:66:65:0:0%:31,34,0,0 -Example1_ref 5849 . T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:83,70,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 5850 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:81,73,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 5851 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:78,74,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 5852 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 5853 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 5854 . G . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:85,74,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 5855 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:83,72,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 5856 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:81,72,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 5857 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:83,68,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 5858 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:85,68,0,0 0/0:.:63:63:0:0%:28,35,0,0 -Example1_ref 5859 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:84,69,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 5860 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 5861 . T A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=6.9302E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:85,63,0,1 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 5862 . C T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.0089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:87,69,0,1 0/0:.:67:67:0:0%:30,37,0,0 -Example1_ref 5863 . C A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=6.9444E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:85,64,0,1 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 5864 . C . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:81,67,0,0 0/0:.:65:64:0:0%:29,35,0,0 -Example1_ref 5865 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:82,64,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 5866 . C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:93,66,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 5867 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:90,67,0,0 0/0:.:67:67:0:0%:30,37,0,0 -Example1_ref 5868 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 5869 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:91,71,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 5870 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 5871 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5872 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:89,67,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5873 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:0:0%:89,66,0,0 0/0:.:70:70:0:0%:33,37,0,0 -Example1_ref 5874 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:88,68,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 5875 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:89,66,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 5876 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:89,67,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5877 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 5878 . T TG . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=6.8722E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:91,64,0,1 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5879 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5880 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:90,63,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 5881 . C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5882 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5883 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:67:66:0:0%:28,38,0,0 -Example1_ref 5884 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:71:71:0:0%:31,40,0,0 -Example1_ref 5885 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:91,64,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 5886 . C . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 5887 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 5888 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5889 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:90,60,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5890 . C . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5891 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:91,63,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 5892 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:92,63,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 5893 . A ATCCTG . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=6.861E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:89,63,1,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 5894 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:82,62,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 5895 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:81,63,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 5896 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:80,63,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 5897 . A T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=3.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:82,66,0,0 0/0:.:72:71:1:1.39%:32,39,1,0 -Example1_ref 5898 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:83,66,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5899 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:82,66,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 5900 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:80,66,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 5901 . GGT G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=6.713E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:79,65,0,1 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5902 . G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:0:0%:77,63,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 5903 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:0:0%:72,64,0,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 5904 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 5905 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:69,63,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 5906 . ATTC A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=6.7662E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:72,63,0,1 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 5907 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:71,60,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 5908 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:0:0%:70,62,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 5909 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:0:0%:69,63,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 5910 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:69,64,0,0 0/0:.:63:63:0:0%:31,32,0,0 -Example1_ref 5911 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:74,66,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 5912 . T G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=6.8269E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:76,65,0,1 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 5913 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:75,67,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 5914 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:73,63,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 5915 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 5916 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 5917 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:73,63,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 5918 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 5919 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 5920 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 5921 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:77,61,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 5922 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 5923 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:63:63:0:0%:37,26,0,0 -Example1_ref 5924 . T . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 5925 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:78,52,0,0 0/0:.:61:61:0:0%:37,24,0,0 -Example1_ref 5926 . CA C . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=6.8478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:74,51,1,0 0/0:.:58:58:0:0%:36,22,0,0 -Example1_ref 5927 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:62:61:0:0%:36,25,0,0 -Example1_ref 5928 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:61:61:0:0%:36,25,0,0 -Example1_ref 5929 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 5930 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:76,51,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 5931 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 5932 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 5933 . G . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 5934 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:77,53,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 5935 . G . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:79,56,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 5936 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 5937 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:63:63:0:0%:36,27,0,0 -Example1_ref 5938 . TG T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=6.7839E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:82,52,0,1 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 5939 . G . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 5940 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:86,54,0,0 0/0:.:62:62:0:0%:34,28,0,0 -Example1_ref 5941 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:0:0%:88,59,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 5942 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:88,57,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 5943 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:89,55,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 5944 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:89,57,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 5945 . T A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=3.1132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:90,56,0,0 0/0:.:66:65:1:1.52%:37,28,1,0 -Example1_ref 5946 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:91,54,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 5947 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:84,54,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 5948 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:84,54,0,0 0/0:.:60:60:0:0%:37,23,0,0 -Example1_ref 5949 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:89,53,0,0 0/0:.:60:60:0:0%:37,23,0,0 -Example1_ref 5950 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:89,54,0,0 0/0:.:58:58:0:0%:35,23,0,0 -Example1_ref 5951 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:92,55,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 5952 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:92,57,0,0 0/0:.:63:63:0:0%:38,25,0,0 -Example1_ref 5953 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:91,59,0,0 0/0:.:61:61:0:0%:37,24,0,0 -Example1_ref 5954 . C A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=7.0443E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:88,54,0,1 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 5955 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:87,57,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 5956 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:88,57,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 5957 . G A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=2.9208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:87,56,0,0 0/0:.:59:58:1:1.69%:33,25,1,0 -Example1_ref 5958 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:87,58,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 5959 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 5960 . AT A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.0192E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:85,60,0,1 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 5961 . T A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=7.0476E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:147:1:0.68%:87,60,0,1 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 5962 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:63:63:0:0%:36,27,0,0 -Example1_ref 5963 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:88,62,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 5964 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 5965 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:60:59:0:0%:33,26,0,0 -Example1_ref 5966 . T G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=7.0952E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:87,61,0,1 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 5967 . G T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=2.9126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:83,63,0,0 0/0:.:60:59:1:1.67%:33,26,1,0 -Example1_ref 5968 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:85,64,0,0 0/0:.:63:63:0:0%:36,27,0,0 -Example1_ref 5969 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:87,62,0,0 0/0:.:59:59:0:0%:34,25,0,0 -Example1_ref 5970 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:85,62,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 5971 . A T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.343E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:151:1:0.66%:86,65,1,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 5972 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:82,67,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 5973 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:88,67,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 5974 . G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:81,69,0,0 0/0:.:53:53:0:0%:28,25,0,0 -Example1_ref 5975 . G A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=5.5766E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:143:2:1.38%:78,65,0,2 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 5976 . G . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:79,67,0,0 0/0:.:51:51:0:0%:27,24,0,0 -Example1_ref 5977 . G A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=5.7537E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:143:2:1.38%:78,65,0,2 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 5978 . C A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=2.7136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:79,66,0,0 0/0:.:54:53:1:1.85%:31,22,0,1 -Example1_ref 5979 . A AG . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=5.5215E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:146:2:1.35%:81,65,0,2 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 5980 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:92,65,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 5981 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:89,66,0,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 5982 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:91,66,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 5983 . C . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:93,68,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 5984 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 5985 . A T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.2444E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:92,70,0,1 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 5986 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 5987 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:85,85,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 5988 . T . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:89,86,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 5989 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:85,82,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 5990 . G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 5991 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:0:0%:85,83,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 5992 . G C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.4026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:170:1:0.58%:85,85,1,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 5993 . C . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 5994 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:88,87,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 5995 . G . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:90,88,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 5996 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:91,89,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 5997 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:0:0%:92,89,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 5998 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:92,91,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 5999 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:92,91,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 6000 . C T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=7.4689E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:92,87,0,1 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 6001 . A T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.439E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:92,90,0,1 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 6002 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:90,91,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 6003 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:90,93,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 6004 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:89,93,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 6005 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:89,93,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 6006 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:91,94,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 6007 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:91,93,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6008 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:99,93,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 6009 . C CAG . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=4.308E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:98,92,0,1 0/0:.:62:61:1:1.61%:32,29,0,1 -Example1_ref 6010 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:98,94,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 6011 . TA T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.4806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:99,93,0,1 0/0:.:65:65:0:0%:34,31,0,0 -Example1_ref 6012 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:0:0%:98,93,0,0 0/0:.:62:62:0:0%:32,30,0,0 -Example1_ref 6013 . G T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.5197E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:97,93,1,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 6014 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:98,92,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 6015 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:99,92,0,0 0/0:.:65:65:0:0%:34,31,0,0 -Example1_ref 6016 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:100,91,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 6017 . C T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.4609E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:102,88,0,1 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 6018 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:102,87,0,0 0/0:.:68:68:0:0%:37,31,0,0 -Example1_ref 6019 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:100,88,0,0 0/0:.:68:68:0:0%:37,31,0,0 -Example1_ref 6020 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:100,84,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 6021 . C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:102,88,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 6022 . A AG . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=2.7132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:100,88,0,0 0/0:.:70:69:1:1.43%:38,31,0,1 -Example1_ref 6023 . G A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=2.6772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:0:0%:98,88,0,0 0/0:.:68:67:1:1.47%:36,31,0,1 -Example1_ref 6024 . C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:98,87,0,0 0/0:.:72:72:0:0%:40,32,0,0 -Example1_ref 6025 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:97,87,0,0 0/0:.:72:72:0:0%:40,32,0,0 -Example1_ref 6026 . G . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:110,87,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 6027 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:110,92,0,0 0/0:.:80:80:0:0%:45,35,0,0 -Example1_ref 6028 . T G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=2.8929E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:104,95,0,0 0/0:.:81:80:1:1.23%:45,35,0,1 -Example1_ref 6029 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:113,96,0,0 0/0:.:84:84:0:0%:48,36,0,0 -Example1_ref 6030 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:115,95,0,0 0/0:.:86:86:0:0%:49,37,0,0 -Example1_ref 6031 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:113,94,0,0 0/0:.:84:84:0:0%:49,35,0,0 -Example1_ref 6032 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:0:0%:113,94,0,0 0/0:.:86:86:0:0%:49,37,0,0 -Example1_ref 6033 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:114,92,0,0 0/0:.:87:87:0:0%:50,37,0,0 -Example1_ref 6034 . T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:114,97,0,0 0/0:.:80:80:0:0%:45,35,0,0 -Example1_ref 6035 . G A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=2.7368E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:112,95,0,0 0/0:.:78:77:1:1.28%:43,34,1,0 -Example1_ref 6036 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:0:0%:105,92,0,0 0/0:.:76:76:0:0%:45,31,0,0 -Example1_ref 6037 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:71:71:0:0%:43,28,0,0 -Example1_ref 6038 . C A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=4.7131E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:112,90,0,1 0/0:.:76:75:1:1.32%:47,28,0,1 -Example1_ref 6039 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:115,93,0,0 0/0:.:79:79:0:0%:49,30,0,0 -Example1_ref 6040 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:115,96,0,0 0/0:.:79:79:0:0%:49,30,0,0 -Example1_ref 6041 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:115,95,0,0 0/0:.:77:77:0:0%:47,30,0,0 -Example1_ref 6042 . T . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:113,97,0,0 0/0:.:83:83:0:0%:50,33,0,0 -Example1_ref 6043 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:0:0%:115,96,0,0 0/0:.:83:83:0:0%:50,33,0,0 -Example1_ref 6044 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:108,94,0,0 0/0:.:81:81:0:0%:49,32,0,0 -Example1_ref 6045 . TC T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=2.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:112,96,0,0 0/0:.:80:79:1:1.25%:49,30,0,1 -Example1_ref 6046 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:114,98,0,0 0/0:.:82:82:0:0%:48,34,0,0 -Example1_ref 6047 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:110,98,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 6048 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:111,97,0,0 0/0:.:83:83:0:0%:49,34,0,0 -Example1_ref 6049 . G T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=2.8912E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:112,97,0,0 0/0:.:85:84:1:1.18%:50,34,1,0 -Example1_ref 6050 . G T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=2.8475E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:110,101,0,0 0/0:.:84:83:1:1.19%:50,33,1,0 -Example1_ref 6051 . A AC . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=2.8621E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:106,101,0,0 0/0:.:83:82:1:1.2%:48,34,1,0 -Example1_ref 6052 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:84:84:0:0%:49,35,0,0 -Example1_ref 6053 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:83:83:0:0%:49,34,0,0 -Example1_ref 6054 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:86:86:0:0%:49,37,0,0 -Example1_ref 6055 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:89:89:0:0%:52,37,0,0 -Example1_ref 6056 . T A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=2.9276E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:89:88:1:1.12%:52,36,0,1 -Example1_ref 6057 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:91:91:0:0%:53,38,0,0 -Example1_ref 6058 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:107,100,0,0 0/0:.:89:89:0:0%:52,37,0,0 -Example1_ref 6059 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:112,98,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 6060 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:113,98,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 6061 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:113,97,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 6062 . A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:110,99,0,0 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 6063 . C A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=2.99E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:113,98,0,0 0/0:.:90:89:1:1.11%:50,39,0,1 -Example1_ref 6064 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:109,97,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 6065 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:114,98,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 6066 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:113,98,0,0 0/0:.:87:87:0:0%:49,38,0,0 -Example1_ref 6067 . G A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=3.0097E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:115,101,0,0 0/0:.:93:92:1:1.08%:51,41,1,0 -Example1_ref 6068 . A C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.013E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:115,100,0,1 0/0:.:92:92:0:0%:51,41,0,0 -Example1_ref 6069 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:115,100,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 6070 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:119,101,0,0 0/0:.:92:92:0:0%:50,42,0,0 -Example1_ref 6071 . T . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:120,100,0,0 0/0:.:89:89:0:0%:50,39,0,0 -Example1_ref 6072 . G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:119,101,0,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 6073 . G T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=5.1352E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:104,103,1,0 0/0:.:90:89:1:1.11%:47,42,1,0 -Example1_ref 6074 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:112,101,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 6075 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:87:87:0:0%:47,40,0,0 -Example1_ref 6076 . A T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=7.1148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:114,102,1,0 0/0:.:88:88:0:0%:48,40,0,0 -Example1_ref 6077 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:116,103,0,0 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 6078 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:119,103,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 6079 . T C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.1148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:216:1:0.46%:117,99,1,0 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 6080 . G . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:122,103,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 6081 . T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:122,106,0,0 0/0:.:85:85:0:0%:50,35,0,0 -Example1_ref 6082 . C . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:119,106,0,0 0/0:.:90:90:0:0%:52,38,0,0 -Example1_ref 6083 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:120,107,0,0 0/0:.:93:93:0:0%:52,41,0,0 -Example1_ref 6084 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:120,109,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 6085 . T . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:119,105,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 6086 . C A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=2.8261E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:121,110,0,0 0/0:.:91:90:1:1.1%:49,41,0,1 -Example1_ref 6087 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:120,109,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 6088 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:124,110,0,0 0/0:.:94:94:0:0%:50,44,0,0 -Example1_ref 6089 . G T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=2.0851E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:115,109,1,0 0/0:.:95:92:2:2.13%:48,44,2,0 -Example1_ref 6090 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:119,109,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 6091 . A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:126,112,0,0 0/0:.:96:96:0:0%:48,48,0,0 -Example1_ref 6092 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:131,113,0,0 0/0:.:98:98:0:0%:50,48,0,0 -Example1_ref 6093 . C A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=2.8571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:132,113,0,0 0/0:.:98:97:1:1.02%:50,47,0,1 -Example1_ref 6094 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:131,111,0,0 0/0:.:98:97:0:0%:50,47,0,0 -Example1_ref 6095 . T . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:131,112,0,0 0/0:.:98:98:0:0%:49,49,0,0 -Example1_ref 6096 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:132,116,0,0 0/0:.:96:96:0:0%:48,48,0,0 -Example1_ref 6097 . TC T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=2.6488E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:132,115,0,0 0/0:.:89:88:1:1.12%:46,42,0,1 -Example1_ref 6098 . C A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=7.2861E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:132,114,0,1 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 6099 . C A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=4.7009E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:131,112,0,1 0/0:.:91:90:1:1.1%:44,46,0,1 -Example1_ref 6100 . C . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:131,116,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 6101 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:128,113,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 6102 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:126,113,0,0 0/0:.:91:91:0:0%:46,45,0,0 -Example1_ref 6103 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:128,115,0,0 0/0:.:93:93:0:0%:46,47,0,0 -Example1_ref 6104 . G GC . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=2.7463E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:127,116,0,0 0/0:.:92:91:1:1.09%:44,47,1,0 -Example1_ref 6105 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:129,117,0,0 0/0:.:92:92:0:0%:47,45,0,0 -Example1_ref 6106 . C . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:126,118,0,0 0/0:.:89:89:0:0%:45,44,0,0 -Example1_ref 6107 . C A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.1988E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:121,117,1,0 0/0:.:93:93:0:0%:46,47,0,0 -Example1_ref 6108 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:126,119,0,0 0/0:.:94:94:0:0%:44,50,0,0 -Example1_ref 6109 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:126,119,0,0 0/0:.:95:95:0:0%:45,50,0,0 -Example1_ref 6110 . G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:119,119,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 6111 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:125,119,0,0 0/0:.:93:93:0:0%:44,49,0,0 -Example1_ref 6112 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:123,117,0,0 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 6113 . C . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:128,118,0,0 0/0:.:95:95:0:0%:46,49,0,0 -Example1_ref 6114 . C . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:124,120,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 6115 . A C . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=7.1594E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:126,120,0,1 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 6116 . C . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:128,120,0,0 0/0:.:97:97:0:0%:46,51,0,0 -Example1_ref 6117 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:127,120,0,0 0/0:.:96:96:0:0%:46,50,0,0 -Example1_ref 6118 . G A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=2.7907E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:127,121,0,0 0/0:.:96:95:1:1.04%:44,51,1,0 -Example1_ref 6119 . T A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=7.2595E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:126,122,1,0 0/0:.:94:94:0:0%:46,48,0,0 -Example1_ref 6120 . C . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:124,116,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 6121 . A AG . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=7.172E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:124,121,0,1 0/0:.:97:97:0:0%:46,51,0,0 -Example1_ref 6122 . C A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=4.8684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:127,120,1,0 0/0:.:98:97:1:1.02%:49,48,0,1 -Example1_ref 6123 . A C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=2.8613E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:123,124,0,0 0/0:.:99:98:1:1.01%:49,49,0,1 -Example1_ref 6124 . T G . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=2.8783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:119,121,0,0 0/0:.:97:96:1:1.03%:47,49,0,1 -Example1_ref 6125 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:120,121,0,0 0/0:.:97:97:0:0%:45,52,0,0 -Example1_ref 6126 . A C . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=2.8909E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:119,122,0,0 0/0:.:98:97:1:1.02%:46,51,1,0 -Example1_ref 6127 . G A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=2.8783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:117,123,0,0 0/0:.:98:96:1:1.03%:46,50,0,1 -Example1_ref 6128 . A T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=2.8402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:119,123,0,0 0/0:.:96:95:1:1.04%:45,50,0,1 -Example1_ref 6129 . C . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:112,122,0,0 0/0:.:95:95:0:0%:45,50,0,0 -Example1_ref 6130 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:111,125,0,0 0/0:.:97:97:0:0%:47,50,0,0 -Example1_ref 6131 . T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:112,118,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 6132 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:112,118,0,0 0/0:.:94:94:0:0%:46,48,0,0 -Example1_ref 6133 . G . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:117,116,0,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 6134 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:94:94:0:0%:45,49,0,0 -Example1_ref 6135 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:121,114,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 6136 . C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:114,114,0,0 0/0:.:88:88:0:0%:42,46,0,0 -Example1_ref 6137 . C G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.236E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:1:0.43%:116,116,1,0 0/0:.:89:89:0:0%:42,47,0,0 -Example1_ref 6138 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:119,118,0,0 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 6139 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:121,118,0,0 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 6140 . G . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:118,115,0,0 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 6141 . G . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:118,117,0,0 0/0:.:90:90:0:0%:43,47,0,0 -Example1_ref 6142 . T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:120,115,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 6143 . A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:119,117,0,0 0/0:.:89:89:0:0%:42,47,0,0 -Example1_ref 6144 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:117,116,0,0 0/0:.:89:89:0:0%:42,47,0,0 -Example1_ref 6145 . G T . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=7.2477E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:120,116,1,0 0/0:.:90:90:0:0%:42,48,0,0 -Example1_ref 6146 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:122,114,0,0 0/0:.:88:88:0:0%:43,45,0,0 -Example1_ref 6147 . AT A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=7.2644E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:118,120,1,0 0/0:.:90:90:0:0%:43,47,0,0 -Example1_ref 6148 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:119,118,0,0 0/0:.:89:89:0:0%:45,44,0,0 -Example1_ref 6149 . T TC . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=5.325E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:228:2:0.87%:111,117,2,0 0/0:.:85:85:0:0%:43,42,0,0 -Example1_ref 6150 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:232:0:0%:116,116,0,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 6151 . G T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=4.7578E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:114,119,1,0 0/0:.:89:88:1:1.12%:43,45,1,0 -Example1_ref 6152 . T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:119,118,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 6153 . C A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=2.6814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:118,114,0,0 0/0:.:85:84:1:1.18%:41,43,0,1 -Example1_ref 6154 . A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 6155 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:118,119,0,0 0/0:.:86:86:0:0%:42,44,0,0 -Example1_ref 6156 . T C . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=2.6154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:120,120,0,0 0/0:.:85:84:1:1.18%:42,42,0,1 -Example1_ref 6157 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:115,119,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 6158 . G T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=7.3354E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:113,120,1,0 0/0:.:85:85:0:0%:41,44,0,0 -Example1_ref 6159 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:118,119,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 6160 . G . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:112,118,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 6161 . G . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:109,119,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 6162 . A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:115,117,0,0 0/0:.:85:85:0:0%:41,44,0,0 -Example1_ref 6163 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:116,119,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 6164 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:120,119,0,0 0/0:.:87:87:0:0%:43,44,0,0 -Example1_ref 6165 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:117,120,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 6166 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:113,121,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 6167 . T G . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=7.2783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:118,119,1,0 0/0:.:89:89:0:0%:44,45,0,0 -Example1_ref 6168 . T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:115,120,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 6169 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:0:0%:112,121,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 6170 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:110,102,0,0 0/0:.:78:78:0:0%:40,38,0,0 -Example1_ref 6171 . G . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:80:80:0:0%:39,41,0,0 -Example1_ref 6172 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:110,103,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 6173 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 6174 . T C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.2148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:214:1:0.47%:110,104,1,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 6175 . T G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=7.2109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:109,102,1,0 0/0:.:82:82:0:0%:43,39,0,0 -Example1_ref 6176 . G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 6177 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:114,103,0,0 0/0:.:88:88:0:0%:48,40,0,0 -Example1_ref 6178 . A C . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=7.1711E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:114,103,0,1 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 6179 . T C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=7.1096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:109,104,1,0 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 6180 . A G . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=4.9448E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:113,103,1,0 0/0:.:88:87:1:1.14%:47,40,0,1 -Example1_ref 6181 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:110,104,0,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 6182 . C . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:83:83:0:0%:45,38,0,0 -Example1_ref 6183 . A . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:116,103,0,0 0/0:.:88:88:0:0%:48,40,0,0 -Example1_ref 6184 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:113,102,0,0 0/0:.:88:88:0:0%:47,41,0,0 -Example1_ref 6185 . C T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=7.138E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:111,100,1,0 0/0:.:85:85:0:0%:47,38,0,0 -Example1_ref 6186 . C . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:109,96,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 6187 . A G . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=7.0034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:109,98,1,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 6188 . C T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=2.9866E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:112,97,0,0 0/0:.:89:88:1:1.12%:48,40,1,0 -Example1_ref 6189 . A C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=7.0432E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:115,96,0,1 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 6190 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:118,99,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 6191 . G . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:115,99,0,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 6192 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:118,97,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 6193 . A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:119,98,0,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 6194 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:121,96,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 6195 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:0:0%:125,96,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 6196 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:124,96,0,0 0/0:.:90:89:0:0%:51,38,0,0 -Example1_ref 6197 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:114,95,0,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 6198 . C A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=6.9932E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:114,92,0,1 0/0:.:89:89:0:0%:51,38,0,0 -Example1_ref 6199 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:115,94,0,0 0/0:.:87:87:0:0%:49,38,0,0 -Example1_ref 6200 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:112,98,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 6201 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:112,99,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 6202 . G . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:0:0%:113,100,0,0 0/0:.:87:87:0:0%:47,40,0,0 -Example1_ref 6203 . G . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:0:0%:106,102,0,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 6204 . T . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:107,101,0,0 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 6205 . A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 6206 . T . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:108,102,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 6207 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 6208 . G T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=2.9054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:109,101,0,0 0/0:.:86:85:1:1.16%:47,38,1,0 -Example1_ref 6209 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:113,101,0,0 0/0:.:86:86:0:0%:47,39,0,0 -Example1_ref 6210 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 6211 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:115,102,0,0 0/0:.:88:88:0:0%:48,40,0,0 -Example1_ref 6212 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:114,102,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 6213 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:114,104,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 6214 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:116,104,0,0 0/0:.:85:85:0:0%:46,39,0,0 -Example1_ref 6215 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:101,104,0,0 0/0:.:81:81:0:0%:41,40,0,0 -Example1_ref 6216 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:102,100,0,0 0/0:.:81:81:0:0%:42,39,0,0 -Example1_ref 6217 . A ACTG . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=2.8521E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:105,98,0,0 0/0:.:82:80:1:1.23%:40,40,1,0 -Example1_ref 6218 . T G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=2.7675E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:102,94,0,0 0/0:.:75:74:1:1.33%:38,36,0,1 -Example1_ref 6219 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:76:76:0:0%:39,37,0,0 -Example1_ref 6220 . A G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=2.7407E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:74:73:1:1.35%:37,36,0,1 -Example1_ref 6221 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:100,98,0,0 0/0:.:78:78:0:0%:39,39,0,0 -Example1_ref 6222 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:103,97,0,0 0/0:.:76:76:0:0%:38,38,0,0 -Example1_ref 6223 . C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:103,98,0,0 0/0:.:78:78:0:0%:39,39,0,0 -Example1_ref 6224 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:103,97,0,0 0/0:.:77:77:0:0%:39,38,0,0 -Example1_ref 6225 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:103,99,0,0 0/0:.:76:76:0:0%:37,39,0,0 -Example1_ref 6226 . C A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=7.2894E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:102,96,0,1 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 6227 . C . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:98,97,0,0 0/0:.:75:75:0:0%:38,37,0,0 -Example1_ref 6228 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:99,98,0,0 0/0:.:78:78:0:0%:38,40,0,0 -Example1_ref 6229 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:99,91,0,0 0/0:.:72:72:0:0%:37,35,0,0 -Example1_ref 6230 . C A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=2.6718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:98,94,0,0 0/0:.:70:69:1:1.43%:35,34,0,1 -Example1_ref 6231 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:98,99,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 6232 . G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:99,98,0,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 6233 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:95,99,0,0 0/0:.:76:76:0:0%:37,39,0,0 -Example1_ref 6234 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 6235 . C . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:98,98,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 6236 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:96,97,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 6237 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6238 . G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:93,98,0,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 6239 . G T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=2.6275E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:93,95,0,0 0/0:.:67:66:1:1.49%:30,36,1,0 -Example1_ref 6240 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:96,95,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 6241 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:99,97,0,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 6242 . T C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=7.3106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:96,96,1,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6243 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:97,97,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6244 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:100,97,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 6245 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:94,97,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 6246 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 6247 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:96,97,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6248 . T C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.3256E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:94,94,1,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 6249 . T C . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=7.4131E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:94,97,1,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 6250 . A C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=2.567E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:97,97,0,0 0/0:.:67:66:1:1.49%:33,33,1,0 -Example1_ref 6251 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:96,96,0,0 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 6252 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:98,97,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 6253 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:97,101,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 6254 . C . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:93,100,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 6255 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 6256 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:96,101,0,0 0/0:.:65:65:0:0%:34,31,0,0 -Example1_ref 6257 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:93,103,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 6258 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:93,103,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 6259 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 6260 . A AG . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=7.433E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:89,104,0,1 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 6261 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:88,104,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 6262 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:87,105,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 6263 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:89,104,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 6264 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:0:0%:91,103,0,0 0/0:.:69:69:0:0%:36,33,0,0 -Example1_ref 6265 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:0:0%:92,101,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 6266 . G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:94,104,0,0 0/0:.:70:70:0:0%:36,34,0,0 -Example1_ref 6267 . T A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.3234E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:196:1:0.51%:93,103,1,0 0/0:.:72:72:0:0%:37,35,0,0 -Example1_ref 6268 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:0:0%:94,100,0,0 0/0:.:71:71:0:0%:37,34,0,0 -Example1_ref 6269 . A ATCTGTCTC . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.3704E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:94,104,1,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6270 . T C . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=5.385E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:197:2:1.01%:91,106,2,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 6271 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:93,101,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 6272 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:97,101,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 6273 . A G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=7.3606E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:99,98,0,1 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 6274 . A G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=7.417E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:99,101,0,1 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 6275 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:97,97,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 6276 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:99,98,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 6277 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:98,97,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 6278 . G C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=7.4231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:192:1:0.52%:96,96,1,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 6279 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 6280 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:101,100,0,0 0/0:.:68:68:0:0%:38,30,0,0 -Example1_ref 6281 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:98,92,0,0 0/0:.:67:67:0:0%:39,28,0,0 -Example1_ref 6282 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:95,94,0,0 0/0:.:69:68:0:0%:39,29,0,0 -Example1_ref 6283 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:97,96,0,0 0/0:.:68:68:0:0%:39,29,0,0 -Example1_ref 6284 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:100,111,0,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 6285 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:99,109,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 6286 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:95,107,0,0 0/0:.:70:70:0:0%:38,32,0,0 -Example1_ref 6287 . G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:96,107,0,0 0/0:.:68:68:0:0%:37,31,0,0 -Example1_ref 6288 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:99,107,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 6289 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:99,108,0,0 0/0:.:69:69:0:0%:37,32,0,0 -Example1_ref 6290 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:102,105,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 6291 . G . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:99,105,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 6292 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:67:67:0:0%:37,30,0,0 -Example1_ref 6293 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:103,105,0,0 0/0:.:69:69:0:0%:38,31,0,0 -Example1_ref 6294 . G A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=7.5912E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:1:0.48%:103,104,1,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 6295 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:103,104,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 6296 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:99,108,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 6297 . C A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=4.312E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:99,103,0,1 0/0:.:66:65:1:1.52%:36,29,0,1 -Example1_ref 6298 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 6299 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 6300 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:69:69:0:0%:38,31,0,0 -Example1_ref 6301 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:102,112,0,0 0/0:.:70:70:0:0%:38,32,0,0 -Example1_ref 6302 . C . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:102,108,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 6303 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:102,110,0,0 0/0:.:72:72:0:0%:38,34,0,0 -Example1_ref 6304 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:103,111,0,0 0/0:.:70:70:0:0%:37,33,0,0 -Example1_ref 6305 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 6306 . T A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.5177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:102,109,0,1 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 6307 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:101,114,0,0 0/0:.:72:72:0:0%:38,34,0,0 -Example1_ref 6308 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:103,114,0,0 0/0:.:73:73:0:0%:39,34,0,0 -Example1_ref 6309 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:73:73:0:0%:39,34,0,0 -Example1_ref 6310 . G . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 6311 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:101,112,0,0 0/0:.:73:73:0:0%:38,35,0,0 -Example1_ref 6312 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:101,110,0,0 0/0:.:73:73:0:0%:38,35,0,0 -Example1_ref 6313 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:101,109,0,0 0/0:.:74:74:0:0%:38,36,0,0 -Example1_ref 6314 . G . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:92,111,0,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 6315 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:100,112,0,0 0/0:.:72:72:0:0%:37,35,0,0 -Example1_ref 6316 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:103,110,0,0 0/0:.:75:75:0:0%:39,36,0,0 -Example1_ref 6317 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 6318 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:94,109,0,0 0/0:.:69:69:0:0%:36,33,0,0 -Example1_ref 6319 . C . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:100,110,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 6320 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:99,110,0,0 0/0:.:76:76:0:0%:39,37,0,0 -Example1_ref 6321 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:97,113,0,0 0/0:.:76:76:0:0%:38,38,0,0 -Example1_ref 6322 . G A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=4.6154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:209:1:0.48%:97,112,1,0 0/0:.:76:75:1:1.32%:38,37,1,0 -Example1_ref 6323 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:96,114,0,0 0/0:.:77:77:0:0%:40,37,0,0 -Example1_ref 6324 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:100,115,0,0 0/0:.:80:80:0:0%:42,38,0,0 -Example1_ref 6325 . T . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:80:80:0:0%:42,38,0,0 -Example1_ref 6326 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:99,107,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 6327 . C G . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=7.2474E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:100,107,1,0 0/0:.:79:79:0:0%:42,37,0,0 -Example1_ref 6328 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:101,112,0,0 0/0:.:83:83:0:0%:45,38,0,0 -Example1_ref 6329 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:101,114,0,0 0/0:.:83:83:0:0%:45,38,0,0 -Example1_ref 6330 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:97,111,0,0 0/0:.:80:80:0:0%:45,35,0,0 -Example1_ref 6331 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:100,114,0,0 0/0:.:83:83:0:0%:45,38,0,0 -Example1_ref 6332 . C . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:99,112,0,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 6333 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:100,113,0,0 0/0:.:83:83:0:0%:45,38,0,0 -Example1_ref 6334 . C G . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=4.9534E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:102,106,0,1 0/0:.:85:84:1:1.18%:45,39,1,0 -Example1_ref 6335 . C . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:99,111,0,0 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 6336 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:102,111,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 6337 . G . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:96,112,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 6338 . A AC . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.2093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:216:1:0.46%:100,116,0,1 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 6339 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:101,119,0,0 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 6340 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:98,124,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 6341 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:100,125,0,0 0/0:.:89:89:0:0%:44,45,0,0 -Example1_ref 6342 . C A . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=2.7869E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:0:0%:100,120,0,0 0/0:.:85:84:1:1.18%:42,42,0,1 -Example1_ref 6343 . A . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:99,129,0,0 0/0:.:87:87:0:0%:42,45,0,0 -Example1_ref 6344 . T . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:99,130,0,0 0/0:.:88:88:0:0%:44,44,0,0 -Example1_ref 6345 . A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:98,130,0,0 0/0:.:89:89:0:0%:44,45,0,0 -Example1_ref 6346 . AC A . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=7.1865E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:103,131,1,0 0/0:.:92:92:0:0%:47,45,0,0 -Example1_ref 6347 . C . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:0:0%:105,131,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 6348 . A ATCTGTCTC . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:103,136,1,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 6349 . T C . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=2.6935E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:102,134,0,0 0/0:.:87:86:1:1.15%:43,43,0,1 -Example1_ref 6350 . T G . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=7.1692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:1:0.43%:103,129,0,1 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 6351 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:103,132,0,0 0/0:.:93:92:0:0%:44,48,0,0 -Example1_ref 6352 . A G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.2086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:102,132,0,1 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 6353 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:104,131,0,0 0/0:.:94:94:0:0%:45,49,0,0 -Example1_ref 6354 . C CCTCACTCT . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=4.8472E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:103,128,1,0 0/0:.:91:90:1:1.1%:43,47,1,0 -Example1_ref 6355 . A AG . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=2.8483E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:92:91:1:1.09%:44,47,0,1 -Example1_ref 6356 . A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:103,130,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 6357 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:103,129,0,0 0/0:.:92:92:0:0%:44,48,0,0 -Example1_ref 6358 . T . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:102,132,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 6359 . C A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=5.1402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:229:2:0.87%:99,130,2,0 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 6360 . T . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:102,134,0,0 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 6361 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:101,133,0,0 0/0:.:92:92:0:0%:41,51,0,0 -Example1_ref 6362 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:101,128,0,0 0/0:.:93:93:0:0%:44,49,0,0 -Example1_ref 6363 . T C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=7.1739E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:100,130,0,1 0/0:.:91:91:0:0%:41,50,0,0 -Example1_ref 6364 . G T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=2.8526E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:94,129,0,0 0/0:.:89:88:1:1.12%:38,50,1,0 -Example1_ref 6365 . C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:95,120,0,0 0/0:.:86:86:0:0%:39,47,0,0 -Example1_ref 6366 . A . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:100,128,0,0 0/0:.:89:89:0:0%:38,51,0,0 -Example1_ref 6367 . C . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:101,123,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 6368 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:101,126,0,0 0/0:.:92:92:0:0%:40,52,0,0 -Example1_ref 6369 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:104,125,0,0 0/0:.:91:91:0:0%:40,51,0,0 -Example1_ref 6370 . G T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.1338E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:97,126,0,1 0/0:.:90:90:0:0%:39,51,0,0 -Example1_ref 6371 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:103,127,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 6372 . T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:103,118,0,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 6373 . C A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:102,120,0,1 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 6374 . C T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:102,117,1,0 0/0:.:88:88:0:0%:41,47,0,0 -Example1_ref 6375 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:102,129,0,0 0/0:.:92:92:0:0%:41,51,0,0 -Example1_ref 6376 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:101,130,0,0 0/0:.:91:91:0:0%:40,51,0,0 -Example1_ref 6377 . T TCTGTCTC . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=4.898E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:101,121,1,0 0/0:.:89:88:1:1.12%:39,49,1,0 -Example1_ref 6378 . T . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:94,123,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 6379 . G . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:90,127,0,0 0/0:.:84:84:0:0%:36,48,0,0 -Example1_ref 6380 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:96,130,0,0 0/0:.:86:86:0:0%:36,50,0,0 -Example1_ref 6381 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:0:0%:91,121,0,0 0/0:.:83:83:0:0%:35,48,0,0 -Example1_ref 6382 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:90,129,0,0 0/0:.:86:86:0:0%:37,49,0,0 -Example1_ref 6383 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:90,123,0,0 0/0:.:89:89:0:0%:38,51,0,0 -Example1_ref 6384 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:88,127,0,0 0/0:.:90:90:0:0%:38,52,0,0 -Example1_ref 6385 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:87,123,0,0 0/0:.:86:86:0:0%:36,50,0,0 -Example1_ref 6386 . C . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:87,127,0,0 0/0:.:84:84:0:0%:34,50,0,0 -Example1_ref 6387 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:85,125,0,0 0/0:.:88:88:0:0%:36,52,0,0 -Example1_ref 6388 . A C . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=7.1237E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:86,126,1,0 0/0:.:86:86:0:0%:34,52,0,0 -Example1_ref 6389 . T A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=2.8621E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:85,122,0,0 0/0:.:83:82:1:1.2%:34,48,0,1 -Example1_ref 6390 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:85,120,0,0 0/0:.:87:87:0:0%:35,52,0,0 -Example1_ref 6391 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:83,122,0,0 0/0:.:85:85:0:0%:34,51,0,0 -Example1_ref 6392 . A G . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=7.0934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:86,118,1,0 0/0:.:84:84:0:0%:34,50,0,0 -Example1_ref 6393 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:83,119,0,0 0/0:.:80:80:0:0%:33,47,0,0 -Example1_ref 6394 . C T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=7.148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:1:0.51%:86,111,0,1 0/0:.:79:79:0:0%:34,45,0,0 -Example1_ref 6395 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:86,116,0,0 0/0:.:84:84:0:0%:34,50,0,0 -Example1_ref 6396 . C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:85,113,0,0 0/0:.:81:81:0:0%:34,47,0,0 -Example1_ref 6397 . A G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=7.1034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:85,120,1,0 0/0:.:84:84:0:0%:34,50,0,0 -Example1_ref 6398 . A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:84,121,0,0 0/0:.:84:84:0:0%:34,50,0,0 -Example1_ref 6399 . C A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.0567E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:1:0.5%:81,117,0,1 0/0:.:83:83:0:0%:34,49,0,0 -Example1_ref 6400 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:81,118,0,0 0/0:.:84:84:0:0%:34,50,0,0 -Example1_ref 6401 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:81:81:0:0%:33,48,0,0 -Example1_ref 6402 . G T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=2.9927E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:76,116,0,0 0/0:.:82:81:1:1.22%:33,48,1,0 -Example1_ref 6403 . G A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=2.9389E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:70,115,0,0 0/0:.:77:76:1:1.3%:29,47,1,0 -Example1_ref 6404 . C . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:76,110,0,0 0/0:.:79:79:0:0%:33,46,0,0 -Example1_ref 6405 . C A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.1481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:77,115,0,1 0/0:.:77:77:0:0%:33,44,0,0 -Example1_ref 6406 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:78,118,0,0 0/0:.:82:82:0:0%:34,48,0,0 -Example1_ref 6407 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:80,121,0,0 0/0:.:79:79:0:0%:31,48,0,0 -Example1_ref 6408 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:82:82:0:0%:34,48,0,0 -Example1_ref 6409 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:79,114,0,0 0/0:.:79:79:0:0%:33,46,0,0 -Example1_ref 6410 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:0:0%:78,121,0,0 0/0:.:80:80:0:0%:32,48,0,0 -Example1_ref 6411 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:79:79:0:0%:33,46,0,0 -Example1_ref 6412 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:78,119,0,0 0/0:.:79:79:0:0%:33,46,0,0 -Example1_ref 6413 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:77,119,0,0 0/0:.:78:78:0:0%:32,46,0,0 -Example1_ref 6414 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:72,114,0,0 0/0:.:76:76:0:0%:32,44,0,0 -Example1_ref 6415 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:77,115,0,0 0/0:.:76:76:0:0%:32,44,0,0 -Example1_ref 6416 . T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:76,119,0,0 0/0:.:76:76:0:0%:32,44,0,0 -Example1_ref 6417 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:77,119,0,0 0/0:.:77:77:0:0%:32,45,0,0 -Example1_ref 6418 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:76,118,0,0 0/0:.:76:76:0:0%:32,44,0,0 -Example1_ref 6419 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:76,115,0,0 0/0:.:77:77:0:0%:32,45,0,0 -Example1_ref 6420 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:75,112,0,0 0/0:.:77:77:0:0%:32,45,0,0 -Example1_ref 6421 . G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:74,118,0,0 0/0:.:71:71:0:0%:27,44,0,0 -Example1_ref 6422 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:72,117,0,0 0/0:.:77:77:0:0%:32,45,0,0 -Example1_ref 6423 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:78,116,0,0 0/0:.:78:78:0:0%:33,45,0,0 -Example1_ref 6424 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:77,113,0,0 0/0:.:75:75:0:0%:32,43,0,0 -Example1_ref 6425 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:77,111,0,0 0/0:.:78:78:0:0%:33,45,0,0 -Example1_ref 6426 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:78,116,0,0 0/0:.:76:76:0:0%:32,44,0,0 -Example1_ref 6427 . A G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=7.1481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:77,115,0,1 0/0:.:77:77:0:0%:33,44,0,0 -Example1_ref 6428 . A G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=7.1481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:192:1:0.52%:77,115,0,1 0/0:.:77:77:0:0%:33,44,0,0 -Example1_ref 6429 . A G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.0566E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:186:1:0.53%:73,113,1,0 0/0:.:78:78:0:0%:34,44,0,0 -Example1_ref 6430 . G A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.1595E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:183:1:0.54%:73,110,0,1 0/0:.:73:73:0:0%:30,43,0,0 -Example1_ref 6431 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:71,114,0,0 0/0:.:73:73:0:0%:30,43,0,0 -Example1_ref 6432 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:74,115,0,0 0/0:.:75:75:0:0%:32,43,0,0 -Example1_ref 6433 . T A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=7.1698E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:189:1:0.53%:74,115,0,1 0/0:.:75:75:0:0%:33,42,0,0 -Example1_ref 6434 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:74,116,0,0 0/0:.:74:74:0:0%:31,43,0,0 -Example1_ref 6435 . G . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:70,114,0,0 0/0:.:73:73:0:0%:31,42,0,0 -Example1_ref 6436 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:68,115,0,0 0/0:.:74:74:0:0%:32,42,0,0 -Example1_ref 6437 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:70,114,0,0 0/0:.:74:74:0:0%:32,42,0,0 -Example1_ref 6438 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:68,116,0,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 6439 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:69,116,0,0 0/0:.:74:74:0:0%:32,42,0,0 -Example1_ref 6440 . G A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=7.2093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:68,117,0,1 0/0:.:72:72:0:0%:30,42,0,0 -Example1_ref 6441 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:68,115,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 6442 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:71,115,0,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 6443 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:69,105,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 6444 . G T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=2.9046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:65,106,0,0 0/0:.:70:69:1:1.43%:30,39,0,1 -Example1_ref 6445 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:67,109,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 6446 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:65,105,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 6447 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:66,109,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 6448 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:63,108,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 6449 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:66,105,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 6450 . T A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=7.1193E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:67,105,0,1 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 6451 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:0:0%:63,107,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 6452 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:65,106,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 6453 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:66,107,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 6454 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:62,104,0,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 6455 . A G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=7.1795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:61,106,0,1 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 6456 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:56,106,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 6457 . C CTGTCTCT . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=2.9204E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:57,103,0,0 0/0:.:66:65:1:1.52%:27,38,1,0 -Example1_ref 6458 . T A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=2.8311E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:54,103,0,0 0/0:.:62:61:1:1.61%:24,37,1,0 -Example1_ref 6459 . A G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=7.1749E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:56,103,0,1 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 6460 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:52,104,0,0 0/0:.:60:60:0:0%:25,35,0,0 -Example1_ref 6461 . A AGCAACTT . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=2.844E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:52,104,0,0 0/0:.:62:61:1:1.61%:25,36,1,0 -Example1_ref 6462 . T G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.1759E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:50,104,0,1 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 6463 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:47,105,0,0 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 6464 . C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:48,102,0,0 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 6465 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:48,104,0,0 0/0:.:60:60:0:0%:24,36,0,0 -Example1_ref 6466 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:49,105,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 6467 . T G . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=7.0813E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:46,101,0,1 0/0:.:61:61:0:0%:23,38,0,0 -Example1_ref 6468 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:45,105,0,0 0/0:.:60:60:0:0%:23,37,0,0 -Example1_ref 6469 . G C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=7.0647E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:41,100,0,1 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 6470 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:44,100,0,0 0/0:.:56:56:0:0%:21,35,0,0 -Example1_ref 6471 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:45,101,0,0 0/0:.:56:56:0:0%:22,34,0,0 -Example1_ref 6472 . A C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:45,103,1,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 6473 . G T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=2.7723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:44,102,0,0 0/0:.:56:55:1:1.79%:21,34,1,0 -Example1_ref 6474 . T C . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=6.973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:42,86,1,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 6475 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:43,84,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 6476 . G . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:43,83,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 6477 . G T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=6.9591E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:38,80,1,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 6478 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:40,81,0,0 0/0:.:51:51:0:0%:20,31,0,0 -Example1_ref 6479 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:41,85,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 6480 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:41,83,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 6481 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:40,80,0,0 0/0:.:49:49:0:0%:18,31,0,0 -Example1_ref 6482 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:39,84,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 6483 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:41,85,0,0 0/0:.:55:55:0:0%:24,31,0,0 -Example1_ref 6484 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:39,81,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 6485 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:39,80,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 6486 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:38,79,0,0 0/0:.:50:50:0:0%:20,30,0,0 -Example1_ref 6487 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:38,77,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 6488 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:39,75,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 6489 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:38,74,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 6490 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:37,77,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 6491 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:37,72,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 6492 . G . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:37,72,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 6493 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:37,75,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 6494 . C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:37,74,0,0 0/0:.:44:44:0:0%:18,26,0,0 -Example1_ref 6495 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:37,75,0,0 0/0:.:44:44:0:0%:18,26,0,0 -Example1_ref 6496 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:36,73,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 6497 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:37,73,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 6498 . C . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:36,70,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 6499 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:36,71,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 6500 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:37,71,0,0 0/0:.:43:42:0:0%:18,24,0,0 -Example1_ref 6501 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:36,71,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 6502 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:34,71,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 6503 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:36,68,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 6504 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:36,69,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 6505 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:36,69,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 6506 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:36,67,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 6507 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:36,64,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 6508 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:36,66,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 6509 . T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:36,63,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 6510 . G GCTGTCT . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=2.8571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:37,63,0,0 0/0:.:40:39:1:2.5%:17,22,1,0 -Example1_ref 6511 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:32,62,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 6512 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:31,61,0,0 0/0:.:37:37:0:0%:16,21,0,0 -Example1_ref 6513 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:30,64,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 6514 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:28,64,0,0 0/0:.:36:36:0:0%:15,21,0,0 -Example1_ref 6515 . T . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:27,61,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 6516 . G . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:27,61,0,0 0/0:.:34:34:0:0%:13,21,0,0 -Example1_ref 6517 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:28,62,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 6518 . T . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:29,61,0,0 0/0:.:35:35:0:0%:13,22,0,0 -Example1_ref 6519 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:28,63,0,0 0/0:.:35:35:0:0%:13,22,0,0 -Example1_ref 6520 . A . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:30,61,0,0 0/0:.:36:36:0:0%:15,21,0,0 -Example1_ref 6521 . TTA T . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=2.8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:29,61,0,0 0/0:.:35:34:1:2.86%:13,21,1,0 -Example1_ref 6522 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:29,62,0,0 0/0:.:35:35:0:0%:14,21,0,0 -Example1_ref 6523 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:30,61,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 6524 . T . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:27,60,0,0 0/0:.:32:32:0:0%:12,20,0,0 -Example1_ref 6525 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:27,58,0,0 0/0:.:31:31:0:0%:12,19,0,0 -Example1_ref 6526 . T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:27,57,0,0 0/0:.:30:30:0:0%:12,18,0,0 -Example1_ref 6527 . T . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:26,52,0,0 0/0:.:27:27:0:0%:12,15,0,0 -Example1_ref 6528 . G . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:26,49,0,0 0/0:.:28:28:0:0%:13,15,0,0 -Example1_ref 6529 . T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:0:0%:27,44,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 6530 . T . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:27,41,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 6531 . T . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:69:0:0%:25,44,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 6532 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:25,39,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 6533 . T . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:25,39,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 6534 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:26,38,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 6535 . A ATCTGTCTC . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=2.7907E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:25,37,0,0 0/0:.:24:23:1:4.17%:11,12,1,0 -Example1_ref 6536 . T . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:24,37,0,0 0/0:.:22:22:0:0%:10,12,0,0 -Example1_ref 6537 . T . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:25,33,0,0 0/0:.:19:18:0:0%:10,8,0,0 -Example1_ref 6538 . A . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:24,32,0,0 0/0:.:18:18:0:0%:10,8,0,0 -Example1_ref 6539 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:25,32,0,0 0/0:.:18:18:0:0%:10,8,0,0 -Example1_ref 6540 . T . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:26,32,0,0 0/0:.:17:17:0:0%:10,7,0,0 -Example1_ref 6541 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:26,31,0,0 0/0:.:18:18:0:0%:10,8,0,0 -Example1_ref 6542 . T . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:27,31,0,0 0/0:.:18:18:0:0%:10,8,0,0 -Example1_ref 6543 . A . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:27,32,0,0 0/0:.:19:19:0:0%:10,9,0,0 -Example1_ref 6544 . A . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:27,32,0,0 0/0:.:19:19:0:0%:10,9,0,0 -Example1_ref 6545 . C . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:28,32,0,0 0/0:.:20:20:0:0%:11,9,0,0 -Example1_ref 6546 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:29,28,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6547 . A . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:30,28,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6548 . T . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:30,26,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6549 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:30,26,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6550 . A ACTGTCTC . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=7.3684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:55:1:1.79%:29,26,1,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6551 . T . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:31,24,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6552 . T . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:29,26,0,0 0/0:.:18:18:0:0%:10,8,0,0 -Example1_ref 6553 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:18:18:0:0%:11,7,0,0 -Example1_ref 6554 . C . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:30,23,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6555 . A . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6556 . A . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6557 . T . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:30,26,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 6558 . T . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:30,23,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6559 . G T . PASS DP=69;SS=0;SSC=0;GPV=1E0;SPV=7.3913E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:50:1:1.96%:25,25,1,0 0/0:.:18:18:0:0%:11,7,0,0 -Example1_ref 6560 . C T . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=7.4286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:51:1:1.92%:28,23,1,0 0/0:.:18:18:0:0%:11,7,0,0 -Example1_ref 6561 . A . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:29,25,0,0 0/0:.:18:18:0:0%:11,7,0,0 -Example1_ref 6562 . A . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:28,25,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6563 . T . PASS DP=71;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:29,23,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6564 . T . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:29,25,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6565 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:31,25,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6566 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:31,25,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6567 . G . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:32,24,0,0 0/0:.:20:20:0:0%:13,7,0,0 -Example1_ref 6568 . T . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:32,26,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6569 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:32,25,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 6570 . C . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:32,23,0,0 0/0:.:21:21:0:0%:14,7,0,0 -Example1_ref 6571 . T . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:32,23,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 6572 . A . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:35,25,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 6573 . C . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:35,25,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 6574 . A . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:35,23,0,0 0/0:.:19:19:0:0%:14,5,0,0 -Example1_ref 6575 . G . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 6576 . A . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:19:19:0:0%:13,6,0,0 -Example1_ref 6577 . A G . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=7.4118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:62:1:1.59%:38,24,0,1 0/0:.:22:22:0:0%:15,7,0,0 -Example1_ref 6578 . T . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:38,23,0,0 0/0:.:22:22:0:0%:15,7,0,0 -Example1_ref 6579 . T . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:38,25,0,0 0/0:.:21:21:0:0%:15,6,0,0 -Example1_ref 6580 . C . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:38,25,0,0 0/0:.:21:21:0:0%:15,6,0,0 -Example1_ref 6581 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:21:21:0:0%:15,6,0,0 -Example1_ref 6582 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:21:21:0:0%:15,6,0,0 -Example1_ref 6583 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6584 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:20:20:0:0%:14,6,0,0 -Example1_ref 6585 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6586 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6587 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6588 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:39,28,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6589 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:39,25,0,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6590 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6591 . T . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6592 . C . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6593 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6594 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6595 . G . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:37,27,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6596 . T . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:36,26,0,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6597 . G . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:37,26,0,0 0/0:.:21:21:0:0%:15,6,0,0 -Example1_ref 6598 . G T . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=7.3563E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:63:1:1.56%:37,26,1,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6599 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:22:22:0:0%:15,7,0,0 -Example1_ref 6600 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:39,25,0,0 0/0:.:22:22:0:0%:15,7,0,0 -Example1_ref 6601 . C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:39,26,0,0 0/0:.:23:23:0:0%:16,7,0,0 -Example1_ref 6602 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:23:23:0:0%:16,7,0,0 -Example1_ref 6603 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:23:23:0:0%:16,7,0,0 -Example1_ref 6604 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:22:22:0:0%:15,7,0,0 -Example1_ref 6605 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:42,26,0,0 0/0:.:23:23:0:0%:16,7,0,0 -Example1_ref 6606 . T . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:43,26,0,0 0/0:.:24:24:0:0%:17,7,0,0 -Example1_ref 6607 . G . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:44,25,0,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6608 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:43,27,0,0 0/0:.:21:21:0:0%:15,6,0,0 -Example1_ref 6609 . T . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:44,26,0,0 0/0:.:23:23:0:0%:17,6,0,0 -Example1_ref 6610 . A . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:44,27,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6611 . A . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:43,29,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 6612 . G . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:47,29,0,0 0/0:.:25:25:0:0%:19,6,0,0 -Example1_ref 6613 . C A . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=7.5758E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:74:1:1.33%:47,27,0,1 0/0:.:24:24:0:0%:19,5,0,0 -Example1_ref 6614 . C . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:47,29,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6615 . A . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:48,29,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6616 . T C . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=7.3786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:75:1:1.32%:47,28,1,0 0/0:.:27:27:0:0%:21,6,0,0 -Example1_ref 6617 . A . PASS DP=107;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:51,28,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6618 . T . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:51,31,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6619 . G . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:52,31,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6620 . T . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:52,28,0,0 0/0:.:29:29:0:0%:23,6,0,0 -Example1_ref 6621 . A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:52,25,0,0 0/0:.:29:29:0:0%:23,6,0,0 -Example1_ref 6622 . T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:52,23,0,0 0/0:.:29:29:0:0%:23,6,0,0 -Example1_ref 6623 . T . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:50,23,0,0 0/0:.:29:28:0:0%:22,6,0,0 -Example1_ref 6624 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:52,23,0,0 0/0:.:27:27:0:0%:21,6,0,0 -Example1_ref 6625 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:52,23,0,0 0/0:.:27:27:0:0%:21,6,0,0 -Example1_ref 6626 . C . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:51,23,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6627 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:52,24,0,0 0/0:.:27:27:0:0%:21,6,0,0 -Example1_ref 6628 . A G . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=7.3786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:75:1:1.32%:52,23,0,1 0/0:.:27:27:0:0%:21,6,0,0 -Example1_ref 6629 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:53,24,0,0 0/0:.:26:26:0:0%:20,6,0,0 -Example1_ref 6630 . C . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:55,24,0,0 0/0:.:27:27:0:0%:21,6,0,0 -Example1_ref 6631 . A . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:55,25,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6632 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:56,26,0,0 0/0:.:28:28:0:0%:22,6,0,0 -Example1_ref 6633 . A . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:56,26,0,0 0/0:.:29:29:0:0%:23,6,0,0 -Example1_ref 6634 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:57,26,0,0 0/0:.:29:29:0:0%:23,6,0,0 -Example1_ref 6635 . G . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:57,26,0,0 0/0:.:27:27:0:0%:21,6,0,0 -Example1_ref 6636 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:59,29,0,0 0/0:.:30:30:0:0%:23,7,0,0 -Example1_ref 6637 . C . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:59,29,0,0 0/0:.:30:30:0:0%:23,7,0,0 -Example1_ref 6638 . A AG . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=7.479E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:88:1:1.12%:59,29,0,1 0/0:.:30:30:0:0%:23,7,0,0 -Example1_ref 6639 . C . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:61,30,0,0 0/0:.:30:30:0:0%:22,8,0,0 -Example1_ref 6640 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:61,30,0,0 0/0:.:31:31:0:0%:23,8,0,0 -Example1_ref 6641 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:66,29,0,0 0/0:.:31:31:0:0%:23,8,0,0 -Example1_ref 6642 . C . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:66,33,0,0 0/0:.:32:32:0:0%:24,8,0,0 -Example1_ref 6643 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:64,34,0,0 0/0:.:33:33:0:0%:25,8,0,0 -Example1_ref 6644 . G . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:66,34,0,0 0/0:.:34:34:0:0%:26,8,0,0 -Example1_ref 6645 . T . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:65,35,0,0 0/0:.:34:34:0:0%:26,8,0,0 -Example1_ref 6646 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:33:33:0:0%:25,8,0,0 -Example1_ref 6647 . G . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:67,35,0,0 0/0:.:33:33:0:0%:24,9,0,0 -Example1_ref 6648 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:65,35,0,0 0/0:.:33:33:0:0%:24,9,0,0 -Example1_ref 6649 . T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:68,35,0,0 0/0:.:36:36:0:0%:27,9,0,0 -Example1_ref 6650 . C . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:67,33,0,0 0/0:.:36:36:0:0%:27,9,0,0 -Example1_ref 6651 . A . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:66,34,0,0 0/0:.:36:36:0:0%:27,9,0,0 -Example1_ref 6652 . T . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:66,34,0,0 0/0:.:37:37:0:0%:28,9,0,0 -Example1_ref 6653 . T . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:36:36:0:0%:27,9,0,0 -Example1_ref 6654 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:63,35,0,0 0/0:.:37:37:0:0%:28,9,0,0 -Example1_ref 6655 . A . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:35:35:0:0%:25,10,0,0 -Example1_ref 6656 . C . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:65,36,0,0 0/0:.:39:39:0:0%:29,10,0,0 -Example1_ref 6657 . T . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:65,34,0,0 0/0:.:42:42:0:0%:31,11,0,0 -Example1_ref 6658 . A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:66,35,0,0 0/0:.:41:41:0:0%:30,11,0,0 -Example1_ref 6659 . T . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:67,33,0,0 0/0:.:41:41:0:0%:31,10,0,0 -Example1_ref 6660 . T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:67,35,0,0 0/0:.:42:42:0:0%:31,11,0,0 -Example1_ref 6661 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:68,38,0,0 0/0:.:42:42:0:0%:31,11,0,0 -Example1_ref 6662 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:68,38,0,0 0/0:.:40:40:0:0%:29,11,0,0 -Example1_ref 6663 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:67,37,0,0 0/0:.:42:42:0:0%:31,11,0,0 -Example1_ref 6664 . A . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:67,38,0,0 0/0:.:38:38:0:0%:28,10,0,0 -Example1_ref 6665 . T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:68,36,0,0 0/0:.:40:40:0:0%:30,10,0,0 -Example1_ref 6666 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:67,38,0,0 0/0:.:44:44:0:0%:30,14,0,0 -Example1_ref 6667 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:68,42,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 6668 . T TA . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=6.8125E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:64,44,1,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 6669 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:65,45,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 6670 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:65,45,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 6671 . A G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=5.2601E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:66,44,0,1 0/0:.:50:49:1:2%:29,20,0,1 -Example1_ref 6672 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:66,46,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 6673 . A G . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=5.3141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:63,45,0,1 0/0:.:50:49:1:2%:29,20,0,1 -Example1_ref 6674 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:65,47,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 6675 . C CA . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=5.2709E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:66,48,0,1 0/0:.:52:51:1:1.92%:31,20,0,1 -Example1_ref 6676 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:0:0%:66,47,0,0 0/0:.:51:51:0:0%:32,19,0,0 -Example1_ref 6677 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:0:0%:64,47,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 6678 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 6679 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 6680 . G T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=3.2121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:53:52:1:1.89%:31,21,1,0 -Example1_ref 6681 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:54:54:0:0%:33,21,0,0 -Example1_ref 6682 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:65,49,0,0 0/0:.:54:54:0:0%:33,21,0,0 -Example1_ref 6683 . TA T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=6.7836E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:66,49,1,0 0/0:.:55:55:0:0%:34,21,0,0 -Example1_ref 6684 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:56:56:0:0%:34,22,0,0 -Example1_ref 6685 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:67,47,0,0 0/0:.:54:54:0:0%:33,21,0,0 -Example1_ref 6686 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 6687 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 6688 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:67,52,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 6689 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 6690 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:67,52,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 6691 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:67,51,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 6692 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 6693 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 6694 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 6695 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:71,50,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 6696 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:71,50,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 6697 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 6698 . C . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 6699 . A C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=6.8539E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:121:1:0.82%:71,50,0,1 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 6700 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 6701 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:72,51,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 6702 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 6703 . C A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=3.1818E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:71,49,0,0 0/0:.:56:55:1:1.79%:31,24,1,0 -Example1_ref 6704 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:68,49,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 6705 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 6706 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 6707 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 6708 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:68,51,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 6709 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:72,51,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 6710 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:72,51,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 6711 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:69,52,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 6712 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:70,52,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 6713 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:71,52,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 6714 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:75,52,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 6715 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:74,52,0,0 0/0:.:56:56:0:0%:34,22,0,0 -Example1_ref 6716 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:58:57:0:0%:33,24,0,0 -Example1_ref 6717 . G A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=6.8362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:66,54,1,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 6718 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:71,53,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 6719 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:68,54,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 6720 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 6721 . G . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 6722 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 6723 . G . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 6724 . A C . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=3.0601E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:72,55,0,0 0/0:.:56:55:1:1.79%:32,23,0,1 -Example1_ref 6725 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:74,59,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 6726 . C T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=3.1217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:59:58:1:1.69%:33,25,1,0 -Example1_ref 6727 . C A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=6.8681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:68,56,0,1 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 6728 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:70,57,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 6729 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 6730 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 6731 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:73,58,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 6732 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 6733 . G T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=5.376E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:127:1:0.78%:71,56,1,0 0/0:.:60:59:1:1.67%:32,27,1,0 -Example1_ref 6734 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:74,56,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 6735 . C A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=6.8085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:70,57,0,1 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 6736 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 6737 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:69,56,0,0 0/0:.:59:59:0:0%:33,26,0,0 -Example1_ref 6738 . A T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=6.8108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:68,57,1,0 0/0:.:59:59:0:0%:33,26,0,0 -Example1_ref 6739 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:67,57,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 6740 . C . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:67,57,0,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 6741 . C A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=3.2044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:58:57:1:1.72%:30,27,1,0 -Example1_ref 6742 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:67,58,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 6743 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:68,58,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 6744 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:66,59,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6745 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:67,56,0,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 6746 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:68,59,0,0 0/0:.:61:61:0:0%:33,28,0,0 -Example1_ref 6747 . C A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=6.7568E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:66,58,0,1 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 6748 . G . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:68,57,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 6749 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:69,57,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 6750 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:65,58,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 6751 . ATG A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=6.7033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:121:1:0.82%:65,56,1,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 6752 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6753 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6754 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:62,58,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6755 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:65,58,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6756 . G A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=6.8539E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:121:1:0.82%:61,60,1,0 0/0:.:56:56:0:0%:28,28,0,0 -Example1_ref 6757 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:64,57,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6758 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6759 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:64,56,0,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 6760 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 6761 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:0:0%:61,58,0,0 0/0:.:56:56:0:0%:28,28,0,0 -Example1_ref 6762 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:60,59,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 6763 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6764 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 6765 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:61,58,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 6766 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:59,57,0,0 0/0:.:55:55:0:0%:27,28,0,0 -Example1_ref 6767 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 6768 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:62,54,0,0 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 6769 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 6770 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:61,55,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 6771 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6772 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:62,54,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6773 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:0:0%:62,58,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6774 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:60,57,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 6775 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:62,57,0,0 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 6776 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6777 . C . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6778 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6779 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:58,61,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 6780 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6781 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 6782 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:60,61,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6783 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:57,61,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 6784 . G A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=5.2903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:62,60,1,0 0/0:.:56:55:1:1.79%:28,27,1,0 -Example1_ref 6785 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 6786 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6787 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:60,59,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 6788 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6789 . T C . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=3.1609E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:61,58,0,0 0/0:.:55:54:1:1.82%:28,26,1,0 -Example1_ref 6790 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 6791 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6792 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6793 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:60,60,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 6794 . A C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=3.2597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:62,60,0,0 0/0:.:59:58:1:1.69%:30,28,1,0 -Example1_ref 6795 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:58,59,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 6796 . G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:55,60,0,0 0/0:.:54:54:0:0%:26,28,0,0 -Example1_ref 6797 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 6798 . G A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=3.3133E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:56:54:1:1.82%:27,27,1,0 -Example1_ref 6799 . C . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 6800 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:56,56,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 6801 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:57,60,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 6802 . G T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=3.1515E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:52:51:1:1.92%:24,27,0,1 -Example1_ref 6803 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:55:55:0:0%:27,28,0,0 -Example1_ref 6804 . G A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=3.2121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:53:52:1:1.89%:24,28,1,0 -Example1_ref 6805 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 6806 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:54:54:0:0%:26,28,0,0 -Example1_ref 6807 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 6808 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:54,56,0,0 0/0:.:51:51:0:0%:24,27,0,0 -Example1_ref 6809 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:53,54,0,0 0/0:.:54:54:0:0%:26,28,0,0 -Example1_ref 6810 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:54,56,0,0 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 6811 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 6812 . C . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:53:53:0:0%:24,29,0,0 -Example1_ref 6813 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 6814 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:54,55,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 6815 . C . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:53,54,0,0 0/0:.:53:53:0:0%:24,29,0,0 -Example1_ref 6816 . C A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=6.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:110:1:0.9%:55,55,0,1 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 6817 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:55,55,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 6818 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:54,53,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 6819 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 6820 . C . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 6821 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 6822 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:55:55:0:0%:24,31,0,0 -Example1_ref 6823 . G . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:50,52,0,0 0/0:.:53:53:0:0%:24,29,0,0 -Example1_ref 6824 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:49,54,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 6825 . C . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:49,52,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 6826 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 6827 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 6828 . C . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:49,52,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 6829 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:56:56:0:0%:25,31,0,0 -Example1_ref 6830 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:47,56,0,0 0/0:.:55:55:0:0%:24,31,0,0 -Example1_ref 6831 . G . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:43,55,0,0 0/0:.:51:51:0:0%:21,30,0,0 -Example1_ref 6832 . C . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:45,52,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 6833 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:0:0%:41,54,0,0 0/0:.:50:50:0:0%:20,30,0,0 -Example1_ref 6834 . C . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:46,50,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 6835 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:46,56,0,0 0/0:.:50:50:0:0%:19,31,0,0 -Example1_ref 6836 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 6837 . C . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:49:49:0:0%:20,29,0,0 -Example1_ref 6838 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:47,57,0,0 0/0:.:51:51:0:0%:20,31,0,0 -Example1_ref 6839 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:47,57,0,0 0/0:.:50:50:0:0%:19,31,0,0 -Example1_ref 6840 . C . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:47,51,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 6841 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:47,56,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 6842 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:48,54,0,0 0/0:.:51:51:0:0%:21,30,0,0 -Example1_ref 6843 . G GT . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=6.5806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:1:0.98%:46,55,0,1 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 6844 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 6845 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:44,54,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 6846 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:45,56,0,0 0/0:.:49:49:0:0%:20,29,0,0 -Example1_ref 6847 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:0:0%:45,57,0,0 0/0:.:50:49:0:0%:21,28,0,0 -Example1_ref 6848 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:0:0%:57,58,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 6849 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:57,60,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 6850 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:59,59,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 6851 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:58,56,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 6852 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 6853 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:60,57,0,0 0/0:.:56:55:0:0%:26,29,0,0 -Example1_ref 6854 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:60,57,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 6855 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:0:0%:63,57,0,0 0/0:.:61:61:0:0%:29,32,0,0 -Example1_ref 6856 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:56:56:0:0%:28,28,0,0 -Example1_ref 6857 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:64,47,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 6858 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:64,51,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 6859 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 6860 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:50:50:0:0%:28,22,0,0 -Example1_ref 6861 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:48:48:0:0%:26,22,0,0 -Example1_ref 6862 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:63,50,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 6863 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 6864 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:65,46,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 6865 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:66,47,0,0 0/0:.:55:55:0:0%:30,25,0,0 -Example1_ref 6866 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 6867 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:65,49,0,0 0/0:.:55:55:0:0%:30,25,0,0 -Example1_ref 6868 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 6869 . C A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=6.7683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:63,47,0,1 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 6870 . C A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=5.5694E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:59,48,1,0 0/0:.:54:53:1:1.85%:28,25,1,0 -Example1_ref 6871 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:62,50,0,0 0/0:.:50:50:0:0%:28,22,0,0 -Example1_ref 6872 . T G . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=3.2121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:61,51,0,0 0/0:.:53:52:1:1.89%:30,22,0,1 -Example1_ref 6873 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:59,46,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 6874 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:59,51,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 6875 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:61,51,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 6876 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:61,52,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 6877 . T C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=6.5882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:62,49,0,1 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 6878 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 6879 . A AT . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=6.5868E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:61,48,0,1 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 6880 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 6881 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:60,48,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 6882 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:63,49,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 6883 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6884 . C . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:58,44,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 6885 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:58:58:0:0%:29,29,0,0 -Example1_ref 6886 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:56,51,0,0 0/0:.:59:59:0:0%:29,30,0,0 -Example1_ref 6887 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 6888 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:59:59:0:0%:29,30,0,0 -Example1_ref 6889 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 6890 . T A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=6.478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:56,46,0,1 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 6891 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:57:57:0:0%:28,29,0,0 -Example1_ref 6892 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:57,57,0,0 0/0:.:59:59:0:0%:26,33,0,0 -Example1_ref 6893 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 6894 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 6895 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:58,60,0,0 0/0:.:65:65:0:0%:28,37,0,0 -Example1_ref 6896 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 6897 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6898 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:63,59,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 6899 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:65,61,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 6900 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:61,60,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 6901 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:67,59,0,0 0/0:.:70:69:0:0%:32,37,0,0 -Example1_ref 6902 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:67,60,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 6903 . G T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=3.5025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:67,61,0,0 0/0:.:69:68:1:1.45%:30,38,1,0 -Example1_ref 6904 . C . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:66,56,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 6905 . T A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=6.065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:63,56,1,0 0/0:.:71:70:1:1.41%:32,38,0,1 -Example1_ref 6906 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 6907 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:73:73:0:0%:33,40,0,0 -Example1_ref 6908 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:67,54,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 6909 . T C . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=6.2437E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:65,57,1,0 0/0:.:74:74:0:0%:34,40,0,0 -Example1_ref 6910 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 6911 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:66,59,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 6912 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:67,55,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6913 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 6914 . C T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=6.2827E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:65,54,0,1 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 6915 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:65,56,0,0 0/0:.:73:73:0:0%:33,40,0,0 -Example1_ref 6916 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:66,56,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 6917 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 6918 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 6919 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:63,57,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 6920 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:64,56,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 6921 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 6922 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 6923 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:62,56,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6924 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:64,54,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 6925 . G T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=6.0481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:62,56,1,0 0/0:.:70:69:1:1.43%:33,36,1,0 -Example1_ref 6926 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:63,54,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 6927 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6928 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 6929 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:75:75:0:0%:37,38,0,0 -Example1_ref 6930 . G A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=3.9362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:61,53,0,0 0/0:.:74:73:1:1.35%:36,37,0,1 -Example1_ref 6931 . G T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=6.2434E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:63,54,1,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 6932 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:63,51,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 6933 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:65,54,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6934 . C A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=6.1622E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:1:0.88%:62,51,0,1 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6935 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:62,54,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 6936 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:59,51,0,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 6937 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:61,55,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 6938 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:72:72:0:0%:36,36,0,0 -Example1_ref 6939 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:60,55,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6940 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:61,54,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 6941 . C . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:73:73:0:0%:36,37,0,0 -Example1_ref 6942 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 6943 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:61,53,0,0 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 6944 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 6945 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:58,55,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 6946 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:69:69:0:0%:35,34,0,0 -Example1_ref 6947 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:61,54,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 6948 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:57,56,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 6949 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6950 . A G . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=3.7968E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:61,55,0,0 0/0:.:71:70:1:1.41%:34,36,1,0 -Example1_ref 6951 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 6952 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:57,54,0,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 6953 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:60,56,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 6954 . C T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=6.3388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:62,53,0,1 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 6955 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:62,56,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6956 . TA T . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=6.3102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:63,54,1,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 6957 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:62,55,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6958 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:62,56,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 6959 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:61,56,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6960 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:58,56,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 6961 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:62,52,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 6962 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:59,51,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 6963 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:58,51,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6964 . G T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=6.2069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:55,52,1,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 6965 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 6966 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:59,50,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 6967 . C G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=6.2428E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:58,49,1,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 6968 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 6969 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 6970 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:62,51,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6971 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:61,51,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 6972 . G A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=3.8333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:60,51,0,0 0/0:.:69:68:1:1.45%:32,36,1,0 -Example1_ref 6973 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:62,50,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 6974 . A T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=6.1453E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:58,51,1,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6975 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 6976 . G T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=3.7572E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:65:64:1:1.54%:29,35,0,1 -Example1_ref 6977 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:59,47,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6978 . T C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=6.1236E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:59,49,1,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6979 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6980 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:60,48,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6981 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6982 . G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6983 . A T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=3.8857E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:68:67:1:1.47%:31,36,1,0 -Example1_ref 6984 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 6985 . A ACTGTCTCTT . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=6.1714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:58,49,1,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 6986 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:60,50,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 6987 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 6988 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 6989 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 6990 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 6991 . C . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6992 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:61,53,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6993 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:60,53,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 6994 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:57,53,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 6995 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:60,51,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 6996 . G A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=6.4118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:57,51,0,1 0/0:.:61:61:0:0%:26,35,0,0 -Example1_ref 6997 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:64:64:0:0%:27,37,0,0 -Example1_ref 6998 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 6999 . AT A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=6.3128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:59,53,0,1 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 7000 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:59,52,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 7001 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:62:62:0:0%:27,35,0,0 -Example1_ref 7002 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:58,53,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 7003 . G A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=6.3372E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:55,53,0,1 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 7004 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:0:0%:58,55,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 7005 . T C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=6.3372E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:53,55,1,0 0/0:.:63:63:0:0%:28,35,0,0 -Example1_ref 7006 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 7007 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:58,55,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 7008 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 7009 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 7010 . C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 7011 . T C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=6.4118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:56,52,1,0 0/0:.:61:61:0:0%:28,33,0,0 -Example1_ref 7012 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:59,52,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 7013 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:58,52,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 7014 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:57,51,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 7015 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 7016 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:59:59:0:0%:26,33,0,0 -Example1_ref 7017 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:58:58:0:0%:27,31,0,0 -Example1_ref 7018 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 7019 . T C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=6.2941E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:57,49,0,1 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 7020 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:57,51,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 7021 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 7022 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:61:61:0:0%:28,33,0,0 -Example1_ref 7023 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:57,51,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 7024 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:48,51,0,0 0/0:.:62:62:0:0%:28,34,0,0 -Example1_ref 7025 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:61:61:0:0%:29,32,0,0 -Example1_ref 7026 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:45,44,0,0 0/0:.:59:59:0:0%:27,32,0,0 -Example1_ref 7027 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:58:58:0:0%:29,29,0,0 -Example1_ref 7028 . C T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=6.0811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:1:1.11%:47,42,0,1 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 7029 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:58:58:0:0%:27,31,0,0 -Example1_ref 7030 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:49,43,0,0 0/0:.:60:60:0:0%:29,31,0,0 -Example1_ref 7031 . G T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=6.0811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:89:1:1.11%:46,43,1,0 0/0:.:58:58:0:0%:27,31,0,0 -Example1_ref 7032 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:0:0%:46,44,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 7033 . G GC . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=3.9456E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:0:0%:45,44,0,0 0/0:.:58:57:1:1.72%:26,31,1,0 -Example1_ref 7034 . T A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=3.8926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:0:0%:48,43,0,0 0/0:.:58:57:1:1.72%:28,29,1,0 -Example1_ref 7035 . G T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=6.1379E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:88:1:1.12%:47,41,0,1 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7036 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:0:0%:47,42,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 7037 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 7038 . T . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 7039 . A . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 7040 . C . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:40,45,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 7041 . A . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 7042 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:50:50:0:0%:20,30,0,0 -Example1_ref 7043 . G . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:40,45,0,0 0/0:.:48:48:0:0%:18,30,0,0 -Example1_ref 7044 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:38,43,0,0 0/0:.:45:45:0:0%:18,27,0,0 -Example1_ref 7045 . C . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:35,44,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 7046 . T . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:37,44,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 7047 . T . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:36,44,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 7048 . C . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:36,44,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 7049 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:39,44,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 7050 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7051 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7052 . C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 7053 . A . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 7054 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 7055 . T . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:38,44,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 7056 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:39,44,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 7057 . C . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:37,45,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 7058 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 7059 . G . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:38,43,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 7060 . A . PASS DP=123;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:40,42,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 7061 . G . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 7062 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:40,43,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 7063 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:40,43,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 7064 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:38,43,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 7065 . T . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:39,43,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 7066 . G . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:37,43,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 7067 . T . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:40,41,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 7068 . C . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:40,42,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 7069 . C . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:36,42,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 7070 . A . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:39,42,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 7071 . G . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:41,41,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 7072 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:40,42,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 7073 . A ATCTGTCTC . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=9.5245E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:42,42,0,0 0/0:.:38:36:2:5.26%:16,20,2,0 -Example1_ref 7074 . T . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:80:0:0%:40,40,0,0 0/0:.:37:36:0:0%:20,16,0,0 -Example1_ref 7075 . T . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:40,37,0,0 0/0:.:34:34:0:0%:18,16,0,0 -Example1_ref 7076 . A T . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=7.4465E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/1:.:76:60:16:21.05%:31,29,8,8 0/0:.:35:28:6:17.65%:16,12,2,4 -Example1_ref 7077 . T . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:39,37,0,0 0/0:.:36:36:0:0%:19,17,0,0 -Example1_ref 7078 . A . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:39,36,0,0 0/0:.:36:36:0:0%:19,17,0,0 -Example1_ref 7079 . T . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:40,36,0,0 0/0:.:37:37:0:0%:20,17,0,0 -Example1_ref 7080 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:42,36,0,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 7081 . C CTGGA . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=6.8142E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:76:1:1.3%:40,36,1,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 7082 . C . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:64:0:0%:38,26,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 7083 . A C . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=4.8764E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:61:2:3.17%:35,26,2,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 7084 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:39,26,0,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 7085 . T C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=4.7806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:59:2:3.28%:34,25,2,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 7086 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:36,26,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7087 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:37,24,0,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 7088 . C . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:36,24,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7089 . A . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:58:0:0%:34,24,0,0 0/0:.:26:26:0:0%:16,10,0,0 -Example1_ref 7090 . T . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:26:26:0:0%:16,10,0,0 -Example1_ref 7091 . T . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:34,23,0,0 0/0:.:26:25:0:0%:15,10,0,0 -Example1_ref 7092 . G . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 7093 . A . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 7094 . C . PASS DP=81;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 7095 . A . PASS DP=81;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:33,24,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 7096 . C . PASS DP=82;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:34,23,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 7097 . A . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7098 . A . PASS DP=81;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:34,24,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 7099 . C . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7100 . A . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 7101 . A . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7102 . A . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:35,24,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7103 . T . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:36,24,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7104 . A . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:36,25,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 7105 . T A . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=7.2619E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:60:1:1.64%:36,24,0,1 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 7106 . C . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:34,25,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 7107 . G . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 7108 . G . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:33,27,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 7109 . A . PASS DP=82;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:31,27,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 7110 . T . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:36,26,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 7111 . C . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 7112 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7113 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7114 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7115 . G . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7116 . G T . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=4.7504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:60:1:1.64%:32,28,1,0 0/0:.:23:22:1:4.35%:11,11,1,0 -Example1_ref 7117 . A . PASS DP=81;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:31,27,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 7118 . A . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:22:22:0:0%:12,10,0,0 -Example1_ref 7119 . A . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 7120 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:35,26,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 7121 . T . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:23:23:0:0%:13,10,0,0 -Example1_ref 7122 . C . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 7123 . A . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:34,26,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7124 . T . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:34,27,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7125 . T . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7126 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7127 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:35,27,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7128 . T . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7129 . G . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7130 . A . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7131 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7132 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7133 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7134 . T . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7135 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7136 . C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 7137 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7138 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7139 . T . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7140 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:25:25:0:0%:13,12,0,0 -Example1_ref 7141 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 7142 . G . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 7143 . A . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:35,32,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7144 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7145 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7146 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7147 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7148 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7149 . T . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7150 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7151 . A . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7152 . T C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=2.6136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:33,32,0,0 0/0:.:23:22:1:4.35%:13,9,0,1 -Example1_ref 7153 . C . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:23:23:0:0%:12,11,0,0 -Example1_ref 7154 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7155 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7156 . G . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:30,33,0,0 0/0:.:23:23:0:0%:12,11,0,0 -Example1_ref 7157 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7158 . A . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:30,34,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7159 . G . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7160 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:33,33,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7161 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7162 . C . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:29,33,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7163 . T . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7164 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:32,32,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7165 . C . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7166 . C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7167 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:33,33,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7168 . C . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7169 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:31,33,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 7170 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:27:27:0:0%:14,13,0,0 -Example1_ref 7171 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:32,33,0,0 0/0:.:26:26:0:0%:13,13,0,0 -Example1_ref 7172 . G . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:30,34,0,0 0/0:.:25:25:0:0%:13,12,0,0 -Example1_ref 7173 . A . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:33,35,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 7174 . A . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:33,35,0,0 0/0:.:26:26:0:0%:13,13,0,0 -Example1_ref 7175 . T . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7176 . A . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:33,34,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 7177 . A . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:32,34,0,0 0/0:.:27:27:0:0%:14,13,0,0 -Example1_ref 7178 . C . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:35,35,0,0 0/0:.:27:27:0:0%:14,13,0,0 -Example1_ref 7179 . A . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:35,35,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 7180 . C . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:36,36,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 7181 . A . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:34,32,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 7182 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:35,31,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 7183 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:34,32,0,0 0/0:.:22:22:0:0%:11,11,0,0 -Example1_ref 7184 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 7185 . T . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 7186 . G . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:31,30,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 7187 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:32,29,0,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 7188 . G T . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=2.8916E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:31,28,0,0 0/0:.:24:23:1:4.17%:12,11,1,0 -Example1_ref 7189 . G . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:33,30,0,0 0/0:.:22:22:0:0%:11,11,0,0 -Example1_ref 7190 . G . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:23:23:0:0%:12,11,0,0 -Example1_ref 7191 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:26:26:0:0%:14,12,0,0 -Example1_ref 7192 . A T . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=6.9318E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:60:1:1.64%:32,28,0,1 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7193 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 7194 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:27:27:0:0%:14,13,0,0 -Example1_ref 7195 . A AGAGAC . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=3.0682E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:27:26:1:3.7%:13,13,0,1 -Example1_ref 7196 . A AATTCTGG . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=3.2184E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:32,27,0,0 0/0:.:28:27:1:3.57%:14,13,1,0 -Example1_ref 7197 . A AT . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=6.988E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:57:1:1.72%:30,27,1,0 0/0:.:25:25:0:0%:12,13,0,0 -Example1_ref 7198 . C . PASS DP=81;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:31,26,0,0 0/0:.:24:24:0:0%:12,12,0,0 -Example1_ref 7199 . C . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 7200 . T . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7201 . T . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7202 . T . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7203 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7204 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:33,27,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7205 . A . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7206 . T . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:59:0:0%:34,25,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 7207 . C . PASS DP=89;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:34,26,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7208 . C . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:32,26,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7209 . A . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7210 . G . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:35,28,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7211 . A . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7212 . T . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 7213 . G . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7214 . A . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7215 . T . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:38,28,0,0 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7216 . T . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7217 . T . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:38,30,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7218 . C . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:39,30,0,0 0/0:.:30:30:0:0%:15,15,0,0 -Example1_ref 7219 . T . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:38,30,0,0 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7220 . G . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7221 . G . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:30:30:0:0%:15,15,0,0 -Example1_ref 7222 . A . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:30:30:0:0%:15,15,0,0 -Example1_ref 7223 . G . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:30:30:0:0%:15,15,0,0 -Example1_ref 7224 . A . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7225 . T . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:39,27,0,0 0/0:.:31:31:0:0%:15,16,0,0 -Example1_ref 7226 . G . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:38,27,0,0 0/0:.:30:30:0:0%:14,16,0,0 -Example1_ref 7227 . C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:34,26,0,0 0/0:.:28:28:0:0%:13,15,0,0 -Example1_ref 7228 . A . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:32:32:0:0%:16,16,0,0 -Example1_ref 7229 . C . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:37,27,0,0 0/0:.:31:31:0:0%:15,16,0,0 -Example1_ref 7230 . G A . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=6.9307E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:69:1:1.43%:41,28,0,1 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7231 . T . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:40,29,0,0 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7232 . C . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7233 . C . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:38,26,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7234 . G . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:40,28,0,0 0/0:.:31:31:0:0%:16,15,0,0 -Example1_ref 7235 . G A . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=6.9149E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:64:1:1.54%:35,29,1,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 7236 . T . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:68:68:0:0%:40,28,0,0 0/0:.:33:33:0:0%:16,17,0,0 -Example1_ref 7237 . C . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:43,27,0,0 0/0:.:33:33:0:0%:16,17,0,0 -Example1_ref 7238 . T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:40,31,0,0 0/0:.:33:33:0:0%:16,17,0,0 -Example1_ref 7239 . T . PASS DP=107;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:43,31,0,0 0/0:.:33:33:0:0%:15,18,0,0 -Example1_ref 7240 . C . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:43,33,0,0 0/0:.:33:33:0:0%:16,17,0,0 -Example1_ref 7241 . C . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:39,32,0,0 0/0:.:33:33:0:0%:15,18,0,0 -Example1_ref 7242 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:41,35,0,0 0/0:.:34:34:0:0%:16,18,0,0 -Example1_ref 7243 . T A . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=6.789E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:1:1.35%:43,30,0,1 0/0:.:35:35:0:0%:16,19,0,0 -Example1_ref 7244 . C . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:34:34:0:0%:15,19,0,0 -Example1_ref 7245 . T TCCCAAAG . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=7.0476E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:1:1.35%:41,32,0,1 0/0:.:32:31:0:0%:14,17,0,0 -Example1_ref 7246 . T . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:42,33,0,0 0/0:.:30:30:0:0%:13,17,0,0 -Example1_ref 7247 . T . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:30:30:0:0%:13,17,0,0 -Example1_ref 7248 . G T . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=2.7619E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:29:28:1:3.45%:11,17,1,0 -Example1_ref 7249 . A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:30:30:0:0%:13,17,0,0 -Example1_ref 7250 . T A . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=7.1287E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:1:1.39%:40,31,0,1 0/0:.:29:29:0:0%:13,16,0,0 -Example1_ref 7251 . GA G . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=2.8846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:30:29:1:3.33%:12,17,1,0 -Example1_ref 7252 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:29:29:0:0%:12,17,0,0 -Example1_ref 7253 . A . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7254 . A . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:39,34,0,0 0/0:.:28:28:0:0%:11,17,0,0 -Example1_ref 7255 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:41,33,0,0 0/0:.:29:29:0:0%:12,17,0,0 -Example1_ref 7256 . C . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:38,33,0,0 0/0:.:28:28:0:0%:12,16,0,0 -Example1_ref 7257 . T A . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=7.1154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:1:1.35%:41,32,0,1 0/0:.:30:30:0:0%:13,17,0,0 -Example1_ref 7258 . C . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:38,34,0,0 0/0:.:29:29:0:0%:12,17,0,0 -Example1_ref 7259 . C . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:40,33,0,0 0/0:.:29:29:0:0%:13,16,0,0 -Example1_ref 7260 . A . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:41,34,0,0 0/0:.:30:30:0:0%:13,17,0,0 -Example1_ref 7261 . A . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:38,34,0,0 0/0:.:29:29:0:0%:12,17,0,0 -Example1_ref 7262 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:73:0:0%:39,34,0,0 0/0:.:29:29:0:0%:12,17,0,0 -Example1_ref 7263 . A . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:37,34,0,0 0/0:.:28:28:0:0%:11,17,0,0 -Example1_ref 7264 . A . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:35,35,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7265 . T . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:39,35,0,0 0/0:.:28:28:0:0%:11,17,0,0 -Example1_ref 7266 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:39,35,0,0 0/0:.:28:28:0:0%:11,17,0,0 -Example1_ref 7267 . A . PASS DP=99;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:37,35,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7268 . G . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:40,34,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7269 . A . PASS DP=103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:42,34,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7270 . T . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:72:0:0%:40,32,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7271 . T . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:74:0:0%:40,34,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7272 . A . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:0:0%:39,34,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7273 . A . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:74:0:0%:39,35,0,0 0/0:.:26:26:0:0%:9,17,0,0 -Example1_ref 7274 . T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:0:0%:39,32,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7275 . G . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:72:0:0%:38,34,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7276 . C . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:73:72:0:0%:39,33,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7277 . C . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:0:0%:39,34,0,0 0/0:.:26:26:0:0%:9,17,0,0 -Example1_ref 7278 . G . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:73:0:0%:38,35,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7279 . G T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=7.3196E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:70:1:1.41%:37,33,1,0 0/0:.:26:26:0:0%:9,17,0,0 -Example1_ref 7280 . G T . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=7.5248E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:75:1:1.32%:41,34,1,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7281 . G . PASS DP=101;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:74:74:0:0%:37,37,0,0 0/0:.:27:27:0:0%:9,18,0,0 -Example1_ref 7282 . C A . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=4.4278E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:79:1:1.25%:42,37,0,1 0/0:.:28:26:1:3.7%:9,17,0,1 -Example1_ref 7283 . C . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:40,36,0,0 0/0:.:28:28:0:0%:10,18,0,0 -Example1_ref 7284 . A . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:40,38,0,0 0/0:.:27:27:0:0%:9,18,0,0 -Example1_ref 7285 . G . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:45,39,0,0 0/0:.:27:27:0:0%:9,18,0,0 -Example1_ref 7286 . G . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:26:26:0:0%:8,18,0,0 -Example1_ref 7287 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:46,40,0,0 0/0:.:26:26:0:0%:8,18,0,0 -Example1_ref 7288 . T . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:48,42,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7289 . T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7290 . A . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:50,42,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7291 . C . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7292 . T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7293 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:49,42,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7294 . G . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:50,42,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7295 . C . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:49,40,0,0 0/0:.:26:26:0:0%:8,18,0,0 -Example1_ref 7296 . T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:49,40,0,0 0/0:.:25:25:0:0%:8,17,0,0 -Example1_ref 7297 . A . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:50,42,0,0 0/0:.:25:25:0:0%:8,17,0,0 -Example1_ref 7298 . T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:25:25:0:0%:8,17,0,0 -Example1_ref 7299 . G . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:50,40,0,0 0/0:.:25:25:0:0%:8,17,0,0 -Example1_ref 7300 . C . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:52,41,0,0 0/0:.:25:25:0:0%:8,17,0,0 -Example1_ref 7301 . C . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:24:24:0:0%:8,16,0,0 -Example1_ref 7302 . A . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:51,43,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7303 . A . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:52,44,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7304 . C . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:53,43,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7305 . G . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:53,44,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7306 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:51,45,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7307 . CT C . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=7.9508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:52,44,1,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7308 . T . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:0:0%:51,45,0,0 0/0:.:24:24:0:0%:8,16,0,0 -Example1_ref 7309 . G . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7310 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:54,46,0,0 0/0:.:24:24:0:0%:9,15,0,0 -Example1_ref 7311 . T . PASS DP=123;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:53,46,0,0 0/0:.:24:24:0:0%:9,15,0,0 -Example1_ref 7312 . G . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:23:23:0:0%:8,15,0,0 -Example1_ref 7313 . A . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:23:23:0:0%:8,15,0,0 -Example1_ref 7314 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7315 . G T . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=8.0165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:51,45,1,0 0/0:.:24:24:0:0%:8,16,0,0 -Example1_ref 7316 . G . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:50,44,0,0 0/0:.:24:24:0:0%:8,16,0,0 -Example1_ref 7317 . C . PASS DP=123;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7318 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:54,43,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7319 . G . PASS DP=123;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7320 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:62,44,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7321 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:61,42,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7322 . T A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:27:26:1:3.7%:10,16,0,1 -Example1_ref 7323 . C A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:64,39,0,1 0/0:.:26:26:0:0%:9,17,0,0 -Example1_ref 7324 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:26:26:0:0%:9,17,0,0 -Example1_ref 7325 . G . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7326 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7327 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:69,44,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7328 . C . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:69,43,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7329 . T . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:69,42,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7330 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:67,37,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7331 . C . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:67,41,0,0 0/0:.:25:25:0:0%:9,16,0,0 -Example1_ref 7332 . G . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:68,42,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7333 . T . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:70,40,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7334 . C . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:70,38,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7335 . C . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:26:26:0:0%:10,16,0,0 -Example1_ref 7336 . T . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:69,41,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7337 . T . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:67,40,0,0 0/0:.:26:26:0:0%:9,17,0,0 -Example1_ref 7338 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:27:27:0:0%:10,17,0,0 -Example1_ref 7339 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:73,40,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7340 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:74,42,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7341 . G . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:74,41,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7342 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:33:33:0:0%:11,22,0,0 -Example1_ref 7343 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:31:31:0:0%:11,20,0,0 -Example1_ref 7344 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:74,44,0,0 0/0:.:33:33:0:0%:11,22,0,0 -Example1_ref 7345 . A AGAGAC . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=7.8146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:74,43,0,1 0/0:.:33:33:0:0%:11,22,0,0 -Example1_ref 7346 . A G . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=7.8289E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:118:1:0.84%:75,43,0,1 0/0:.:33:33:0:0%:11,22,0,0 -Example1_ref 7347 . T A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=7.8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:116:1:0.85%:75,41,0,1 0/0:.:33:33:0:0%:11,22,0,0 -Example1_ref 7348 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:33:33:0:0%:11,22,0,0 -Example1_ref 7349 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:76,44,0,0 0/0:.:33:33:0:0%:11,22,0,0 -Example1_ref 7350 . T C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=7.8947E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:76,43,0,1 0/0:.:32:32:0:0%:10,22,0,0 -Example1_ref 7351 . C A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=7.8231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:76,38,0,1 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7352 . T G . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=7.8808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:75,43,0,1 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7353 . G . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:0:0%:80,43,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7354 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:78,46,0,0 0/0:.:31:31:0:0%:10,21,0,0 -Example1_ref 7355 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:79,46,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7356 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:77,45,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7357 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7358 . A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:34:34:0:0%:13,21,0,0 -Example1_ref 7359 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:83,45,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7360 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:83,47,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7361 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7362 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:84,45,0,0 0/0:.:31:31:0:0%:10,21,0,0 -Example1_ref 7363 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:85,47,0,0 0/0:.:34:34:0:0%:11,23,0,0 -Example1_ref 7364 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:84,48,0,0 0/0:.:34:34:0:0%:11,23,0,0 -Example1_ref 7365 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:34:34:0:0%:11,23,0,0 -Example1_ref 7366 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:85,45,0,0 0/0:.:34:34:0:0%:11,23,0,0 -Example1_ref 7367 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:34:34:0:0%:11,23,0,0 -Example1_ref 7368 . C . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:80,44,0,0 0/0:.:30:30:0:0%:10,20,0,0 -Example1_ref 7369 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:30:30:0:0%:10,20,0,0 -Example1_ref 7370 . C . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:79,43,0,0 0/0:.:32:32:0:0%:10,22,0,0 -Example1_ref 7371 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:81,44,0,0 0/0:.:33:33:0:0%:10,23,0,0 -Example1_ref 7372 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:77,45,0,0 0/0:.:32:32:0:0%:9,23,0,0 -Example1_ref 7373 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:79,45,0,0 0/0:.:33:33:0:0%:10,23,0,0 -Example1_ref 7374 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:80,43,0,0 0/0:.:33:33:0:0%:10,23,0,0 -Example1_ref 7375 . C . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:33:33:0:0%:10,23,0,0 -Example1_ref 7376 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:82,46,0,0 0/0:.:32:32:0:0%:10,22,0,0 -Example1_ref 7377 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:83,45,0,0 0/0:.:32:32:0:0%:10,22,0,0 -Example1_ref 7378 . A ACTGTCTC . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:81,46,1,0 0/0:.:32:32:0:0%:10,22,0,0 -Example1_ref 7379 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:0:0%:81,46,0,0 0/0:.:31:31:0:0%:10,21,0,0 -Example1_ref 7380 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:32:32:0:0%:10,22,0,0 -Example1_ref 7381 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:82,46,0,0 0/0:.:33:33:0:0%:10,23,0,0 -Example1_ref 7382 . C . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:84,45,0,0 0/0:.:30:30:0:0%:9,21,0,0 -Example1_ref 7383 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:84,40,0,0 0/0:.:32:32:0:0%:10,22,0,0 -Example1_ref 7384 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:31:31:0:0%:10,21,0,0 -Example1_ref 7385 . G . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:83,45,0,0 0/0:.:31:31:0:0%:10,21,0,0 -Example1_ref 7386 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:83,42,0,0 0/0:.:31:31:0:0%:10,21,0,0 -Example1_ref 7387 . G . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:83,43,0,0 0/0:.:31:31:0:0%:10,21,0,0 -Example1_ref 7388 . G . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:29:29:0:0%:8,21,0,0 -Example1_ref 7389 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:84,45,0,0 0/0:.:28:28:0:0%:7,21,0,0 -Example1_ref 7390 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:84,42,0,0 0/0:.:28:28:0:0%:7,21,0,0 -Example1_ref 7391 . G . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:28:28:0:0%:7,21,0,0 -Example1_ref 7392 . C . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:28:28:0:0%:8,20,0,0 -Example1_ref 7393 . C . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:27:27:0:0%:8,19,0,0 -Example1_ref 7394 . A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:84,46,0,0 0/0:.:29:29:0:0%:8,21,0,0 -Example1_ref 7395 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:31:31:0:0%:11,20,0,0 -Example1_ref 7396 . G . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:87,46,0,0 0/0:.:32:32:0:0%:12,20,0,0 -Example1_ref 7397 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:85,46,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7398 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:88,47,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7399 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:84,50,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7400 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:85,50,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7401 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:87,49,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7402 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:89,47,0,0 0/0:.:32:32:0:0%:12,20,0,0 -Example1_ref 7403 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:90,48,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7404 . G T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=8.0606E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:86,46,0,1 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7405 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:88,48,0,0 0/0:.:31:31:0:0%:12,19,0,0 -Example1_ref 7406 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:88,48,0,0 0/0:.:31:31:0:0%:12,19,0,0 -Example1_ref 7407 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:31:31:0:0%:12,19,0,0 -Example1_ref 7408 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:88,45,0,0 0/0:.:32:32:0:0%:12,20,0,0 -Example1_ref 7409 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:89,49,0,0 0/0:.:31:31:0:0%:12,19,0,0 -Example1_ref 7410 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:89,50,0,0 0/0:.:32:32:0:0%:12,20,0,0 -Example1_ref 7411 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:90,51,0,0 0/0:.:32:32:0:0%:12,20,0,0 -Example1_ref 7412 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:89,51,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7413 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:89,52,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7414 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:89,51,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7415 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:92,52,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7416 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:33:33:0:0%:12,21,0,0 -Example1_ref 7417 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:95,53,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 7418 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:94,51,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 7419 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:97,49,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 7420 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:98,47,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 7421 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:95,47,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 7422 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:99,50,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 7423 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:98,51,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 7424 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:100,49,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 7425 . GAT G . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=7.8723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:100,47,1,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 7426 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:91,51,0,0 0/0:.:37:37:0:0%:16,21,0,0 -Example1_ref 7427 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:94,51,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 7428 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:96,50,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 7429 . G . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 7430 . G . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:0:0%:93,50,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 7431 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:95,51,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 7432 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:96,50,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 7433 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 7434 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:93,53,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 7435 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:96,52,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 7436 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7437 . A T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=2.4103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:93,55,0,0 0/0:.:47:46:1:2.13%:20,26,0,1 -Example1_ref 7438 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:97,55,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 7439 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:99,57,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7440 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:100,56,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7441 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 7442 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:104,57,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 7443 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:101,57,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 7444 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 7445 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 7446 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:104,58,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 7447 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:104,57,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 7448 . C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:101,58,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 7449 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:102,59,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 7450 . G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:99,58,0,0 0/0:.:46:46:0:0%:21,25,0,0 -Example1_ref 7451 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:101,58,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 7452 . C A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=7.7941E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:103,55,0,1 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 7453 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:104,58,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 7454 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 7455 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:101,57,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 7456 . G A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=7.5743E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:152:1:0.65%:96,56,0,1 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 7457 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:101,57,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 7458 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:100,57,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 7459 . C A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=7.7612E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:99,56,0,1 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 7460 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:97,56,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 7461 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:101,54,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 7462 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:96,55,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 7463 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:100,56,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 7464 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:102,58,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 7465 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 7466 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:103,58,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 7467 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:102,58,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 7468 . A C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.6442E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:100,58,1,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 7469 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 7470 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:102,57,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 7471 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:103,54,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 7472 . C T . PASS DP=203;SOMATIC;SS=2;SSC=93;GPV=1E0;SPV=4.614E-10 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:100,54,0,0 0/1:.:49:35:14:28.57%:18,17,4,10 -Example1_ref 7473 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:102,52,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 7474 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:100,54,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7475 . G . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 7476 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:92,53,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7477 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:90,54,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 7478 . TC T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=7.3936E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:138:1:0.72%:87,51,1,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7479 . C A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=7.4866E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:139:1:0.71%:89,50,1,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 7480 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:92,50,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 7481 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7482 . T A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.551E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:96,51,0,1 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 7483 . C . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:48:48:0:0%:22,26,0,0 -Example1_ref 7484 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:96,52,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7485 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:95,51,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 7486 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7487 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:95,48,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7488 . C . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:97,49,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7489 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:96,51,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7490 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:91,52,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 7491 . C . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:91,51,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 7492 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:89,53,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 7493 . A T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=6.8469E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:145:3:2.03%:92,53,2,1 0/0:.:49:48:1:2.04%:22,26,0,1 -Example1_ref 7494 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:92,53,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 7495 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:93,53,0,0 0/0:.:49:48:0:0%:20,28,0,0 -Example1_ref 7496 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:90,51,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 7497 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 7498 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 7499 . A T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=4.1256E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:132:3:2.22%:83,49,2,1 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7500 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:86,51,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7501 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:83,49,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7502 . A ACCTGT . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=7.4033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:83,50,1,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 7503 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:84,50,0,0 0/0:.:47:46:0:0%:19,27,0,0 -Example1_ref 7504 . A G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=7.4444E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:82,51,1,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 7505 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:83,52,0,0 0/0:.:45:45:0:0%:18,27,0,0 -Example1_ref 7506 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:85,51,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7507 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:84,50,0,0 0/0:.:45:45:0:0%:18,27,0,0 -Example1_ref 7508 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:80,50,0,0 0/0:.:45:45:0:0%:18,27,0,0 -Example1_ref 7509 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:42:42:0:0%:16,26,0,0 -Example1_ref 7510 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 7511 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 7512 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:76,54,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7513 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:45:45:0:0%:18,27,0,0 -Example1_ref 7514 . C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:78,54,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7515 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:78,55,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7516 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 7517 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 7518 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:0:0%:75,54,0,0 0/0:.:48:48:0:0%:19,29,0,0 -Example1_ref 7519 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:47:47:0:0%:18,29,0,0 -Example1_ref 7520 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:47:47:0:0%:18,29,0,0 -Example1_ref 7521 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:77,54,0,0 0/0:.:48:48:0:0%:19,29,0,0 -Example1_ref 7522 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:79,54,0,0 0/0:.:47:47:0:0%:17,30,0,0 -Example1_ref 7523 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:49:49:0:0%:19,30,0,0 -Example1_ref 7524 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:77,55,0,0 0/0:.:48:48:0:0%:18,30,0,0 -Example1_ref 7525 . G . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:49:49:0:0%:19,30,0,0 -Example1_ref 7526 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7527 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:76,54,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 7528 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:73,53,0,0 0/0:.:46:46:0:0%:18,28,0,0 -Example1_ref 7529 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:73,48,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 7530 . C A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=7.4233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:120:1:0.83%:72,48,0,1 0/0:.:42:42:0:0%:22,20,0,0 -Example1_ref 7531 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 7532 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 7533 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 7534 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 7535 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 7536 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 7537 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 7538 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:0:0%:74,51,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 7539 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 7540 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 7541 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 7542 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:72,52,0,0 0/0:.:50:50:0:0%:24,26,0,0 -Example1_ref 7543 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 7544 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:50:50:0:0%:24,26,0,0 -Example1_ref 7545 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 7546 . T A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=2.948E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:74,48,0,0 0/0:.:51:50:1:1.96%:24,26,1,0 -Example1_ref 7547 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:73,51,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 7548 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:50:50:0:0%:24,26,0,0 -Example1_ref 7549 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:69,51,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 7550 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:48:48:0:0%:22,26,0,0 -Example1_ref 7551 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:49:49:0:0%:24,25,0,0 -Example1_ref 7552 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7553 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 7554 . G A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=7.1084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:67,50,1,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 7555 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:68,49,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 7556 . G T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=7.1951E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:68,49,1,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 7557 . T C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=7.2393E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:1:0.85%:68,49,1,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 7558 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:45:45:0:0%:24,21,0,0 -Example1_ref 7559 . C A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=2.875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:46:45:1:2.17%:24,21,0,1 -Example1_ref 7560 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 7561 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 7562 . C . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7563 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:44:44:0:0%:24,20,0,0 -Example1_ref 7564 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:64,45,0,0 0/0:.:43:43:0:0%:24,19,0,0 -Example1_ref 7565 . C T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=7.1795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:64,47,1,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7566 . C . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7567 . A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7568 . A C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=2.8221E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:46:45:1:2.17%:24,21,0,1 -Example1_ref 7569 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7570 . G . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:63,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 7571 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:64,50,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7572 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7573 . G . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7574 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 7575 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7576 . G . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:62,48,0,0 0/0:.:45:45:0:0%:24,21,0,0 -Example1_ref 7577 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7578 . A ACTGTCT . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=2.9487E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:61,49,0,0 0/0:.:46:45:1:2.17%:23,22,1,0 -Example1_ref 7579 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 7580 . G . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:58,44,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7581 . A . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:59,44,0,0 0/0:.:42:42:0:0%:22,20,0,0 -Example1_ref 7582 . T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:55,43,0,0 0/0:.:41:41:0:0%:21,20,0,0 -Example1_ref 7583 . C . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:41:40:0:0%:19,21,0,0 -Example1_ref 7584 . A G . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=7.0629E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:1:0.99%:57,43,1,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 7585 . G A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=7.1942E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:99:1:1%:56,43,1,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7586 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:56,44,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 7587 . C . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:54,44,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 7588 . T . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:53,41,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7589 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:52,41,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 7590 . T . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:53,41,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7591 . G T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=6.9697E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:1:1.09%:50,41,1,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 7592 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:49,40,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7593 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7594 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:51,39,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7595 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:50,40,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 7596 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:53,40,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7597 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:52,38,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 7598 . C . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:52,38,0,0 0/0:.:37:37:0:0%:18,19,0,0 -Example1_ref 7599 . A . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:50,37,0,0 0/0:.:37:37:0:0%:17,20,0,0 -Example1_ref 7600 . G . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:48,37,0,0 0/0:.:35:35:0:0%:17,18,0,0 -Example1_ref 7601 . G . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:48,37,0,0 0/0:.:33:33:0:0%:16,17,0,0 -Example1_ref 7602 . C . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:48,36,0,0 0/0:.:35:35:0:0%:17,18,0,0 -Example1_ref 7603 . A . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:50,36,0,0 0/0:.:36:36:0:0%:17,19,0,0 -Example1_ref 7604 . T . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:49,35,0,0 0/0:.:35:35:0:0%:17,18,0,0 -Example1_ref 7605 . A . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:46,37,0,0 0/0:.:34:34:0:0%:17,17,0,0 -Example1_ref 7606 . G . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:79:79:0:0%:43,36,0,0 0/0:.:31:31:0:0%:14,17,0,0 -Example1_ref 7607 . A . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:44,37,0,0 0/0:.:32:32:0:0%:14,18,0,0 -Example1_ref 7608 . A . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:48,36,0,0 0/0:.:33:33:0:0%:15,18,0,0 -Example1_ref 7609 . G . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:45,36,0,0 0/0:.:32:32:0:0%:14,18,0,0 -Example1_ref 7610 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:44,37,0,0 0/0:.:31:31:0:0%:14,17,0,0 -Example1_ref 7611 . T . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:44,36,0,0 0/0:.:31:31:0:0%:14,17,0,0 -Example1_ref 7612 . A . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:43,35,0,0 0/0:.:31:31:0:0%:14,17,0,0 -Example1_ref 7613 . T . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:31:31:0:0%:14,17,0,0 -Example1_ref 7614 . T . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:44,34,0,0 0/0:.:30:30:0:0%:13,17,0,0 -Example1_ref 7615 . G . PASS DP=107;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:77:77:0:0%:43,34,0,0 0/0:.:30:30:0:0%:13,17,0,0 -Example1_ref 7616 . T . PASS DP=105;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:76:76:0:0%:44,32,0,0 0/0:.:29:29:0:0%:13,16,0,0 -Example1_ref 7617 . A . PASS DP=104;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:44,31,0,0 0/0:.:29:29:0:0%:12,17,0,0 -Example1_ref 7618 . C . PASS DP=100;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:43,29,0,0 0/0:.:28:28:0:0%:12,16,0,0 -Example1_ref 7619 . T . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:42,28,0,0 0/0:.:25:25:0:0%:11,14,0,0 -Example1_ref 7620 . T . PASS DP=98;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:72:0:0%:42,30,0,0 0/0:.:26:26:0:0%:11,15,0,0 -Example1_ref 7621 . G . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:40,30,0,0 0/0:.:25:25:0:0%:10,15,0,0 -Example1_ref 7622 . A . PASS DP=94;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:69:69:0:0%:39,30,0,0 0/0:.:25:25:0:0%:10,15,0,0 -Example1_ref 7623 . T . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:41,30,0,0 0/0:.:26:26:0:0%:11,15,0,0 -Example1_ref 7624 . A . PASS DP=95;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:40,30,0,0 0/0:.:25:25:0:0%:11,14,0,0 -Example1_ref 7625 . T . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:71:0:0%:41,30,0,0 0/0:.:25:25:0:0%:11,14,0,0 -Example1_ref 7626 . T . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:41,29,0,0 0/0:.:21:21:0:0%:10,11,0,0 -Example1_ref 7627 . G . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:67:67:0:0%:38,29,0,0 0/0:.:21:21:0:0%:10,11,0,0 -Example1_ref 7628 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:70:70:0:0%:40,30,0,0 0/0:.:22:22:0:0%:11,11,0,0 -Example1_ref 7629 . C . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:37,27,0,0 0/0:.:19:19:0:0%:11,8,0,0 -Example1_ref 7630 . A . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:37,29,0,0 0/0:.:21:21:0:0%:11,10,0,0 -Example1_ref 7631 . A . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:21:21:0:0%:11,10,0,0 -Example1_ref 7632 . T . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:20:20:0:0%:11,9,0,0 -Example1_ref 7633 . T . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:21:21:0:0%:11,10,0,0 -Example1_ref 7634 . A . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:21:21:0:0%:11,10,0,0 -Example1_ref 7635 . T . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:57:0:0%:28,29,0,0 0/0:.:21:21:0:0%:11,10,0,0 -Example1_ref 7636 . G . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:28,29,0,0 0/0:.:21:21:0:0%:11,10,0,0 -Example1_ref 7637 . A ATC . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=2.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:27,28,0,0 0/0:.:20:19:1:5%:9,10,1,0 -Example1_ref 7638 . T . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:28,28,0,0 0/0:.:20:20:0:0%:10,10,0,0 -Example1_ref 7639 . G . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:20:20:0:0%:10,10,0,0 -Example1_ref 7640 . G T . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=2.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:21:20:1:4.76%:10,10,1,0 -Example1_ref 7641 . C . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:27,25,0,0 0/0:.:20:20:0:0%:11,9,0,0 -Example1_ref 7642 . T . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:28,29,0,0 0/0:.:21:21:0:0%:11,10,0,0 -Example1_ref 7643 . C CTTAT . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=2.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:21:20:1:4.76%:10,10,1,0 -Example1_ref 7644 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:20:19:0:0%:9,10,0,0 -Example1_ref 7645 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:28,30,0,0 0/0:.:18:18:0:0%:8,10,0,0 -Example1_ref 7646 . T . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:18:18:0:0%:9,9,0,0 -Example1_ref 7647 . C . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:25,29,0,0 0/0:.:18:18:0:0%:8,10,0,0 -Example1_ref 7648 . T . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:17:17:0:0%:9,8,0,0 -Example1_ref 7649 . C . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:25,30,0,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7650 . A . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:25,30,0,0 0/0:.:18:18:0:0%:8,10,0,0 -Example1_ref 7651 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7652 . C . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7653 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:58:58:0:0%:27,31,0,0 0/0:.:18:18:0:0%:8,10,0,0 -Example1_ref 7654 . A . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:25,30,0,0 0/0:.:18:18:0:0%:9,9,0,0 -Example1_ref 7655 . C . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:25,29,0,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7656 . A . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7657 . A . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:17:17:0:0%:8,9,0,0 -Example1_ref 7658 . G . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:17:17:0:0%:8,9,0,0 -Example1_ref 7659 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:27,30,0,0 0/0:.:18:18:0:0%:8,10,0,0 -Example1_ref 7660 . T . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:18:18:0:0%:9,9,0,0 -Example1_ref 7661 . T . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:17:17:0:0%:9,8,0,0 -Example1_ref 7662 . T . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7663 . A . PASS DP=75;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7664 . A AGCT . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=7.5676E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:55:1:1.79%:25,30,1,0 0/0:.:18:18:0:0%:8,10,0,0 -Example1_ref 7665 . G . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:16:16:0:0%:8,8,0,0 -Example1_ref 7666 . A T . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=7.5342E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:54:1:1.82%:25,29,0,1 0/0:.:18:18:0:0%:9,9,0,0 -Example1_ref 7667 . A ACTGTCTCT . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=7.3973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:1:1.85%:24,29,1,0 0/0:.:19:19:0:0%:9,10,0,0 -Example1_ref 7668 . T . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:24,28,0,0 0/0:.:20:20:0:0%:10,10,0,0 -Example1_ref 7669 . A . PASS DP=69;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:23,28,0,0 0/0:.:18:18:0:0%:9,9,0,0 -Example1_ref 7670 . A . PASS DP=71;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:22,29,0,0 0/0:.:20:20:0:0%:10,10,0,0 -Example1_ref 7671 . T . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:26,30,0,0 0/0:.:21:21:0:0%:12,9,0,0 -Example1_ref 7672 . A . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:20:20:0:0%:11,9,0,0 -Example1_ref 7673 . A . PASS DP=74;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:25,29,0,0 0/0:.:20:20:0:0%:11,9,0,0 -Example1_ref 7674 . T . PASS DP=77;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:56:56:0:0%:27,29,0,0 0/0:.:21:21:0:0%:12,9,0,0 -Example1_ref 7675 . A . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:21:21:0:0%:12,9,0,0 -Example1_ref 7676 . T . PASS DP=76;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:55:55:0:0%:26,29,0,0 0/0:.:21:21:0:0%:12,9,0,0 -Example1_ref 7677 . A . PASS DP=73;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:25,28,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 7678 . A . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:23,28,0,0 0/0:.:19:19:0:0%:11,8,0,0 -Example1_ref 7679 . G . PASS DP=71;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:18:18:0:0%:10,8,0,0 -Example1_ref 7680 . T . PASS DP=71;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:51:51:0:0%:26,25,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 7681 . T . PASS DP=69;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 7682 . T . PASS DP=72;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 7683 . T . PASS DP=68;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:49:49:0:0%:23,26,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 7684 . G . PASS DP=65;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:21,26,0,0 0/0:.:18:18:0:0%:11,7,0,0 -Example1_ref 7685 . A . PASS DP=69;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:25,27,0,0 0/0:.:17:17:0:0%:10,7,0,0 -Example1_ref 7686 . T . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:25,27,0,0 0/0:.:18:18:0:0%:12,6,0,0 -Example1_ref 7687 . C . PASS DP=71;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:26,26,0,0 0/0:.:19:19:0:0%:12,7,0,0 -Example1_ref 7688 . A . PASS DP=70;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:26,26,0,0 0/0:.:18:18:0:0%:11,7,0,0 -Example1_ref 7689 . A . PASS DP=81;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:30,30,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 7690 . C . PASS DP=82;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:20:20:0:0%:13,7,0,0 -Example1_ref 7691 . C . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 7692 . A . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 7693 . T . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:30,31,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 7694 . A . PASS DP=84;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:22:22:0:0%:14,8,0,0 -Example1_ref 7695 . T . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:30,32,0,0 0/0:.:23:23:0:0%:14,9,0,0 -Example1_ref 7696 . G . PASS DP=80;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:28,32,0,0 0/0:.:20:20:0:0%:12,8,0,0 -Example1_ref 7697 . C . PASS DP=78;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:26,31,0,0 0/0:.:21:21:0:0%:12,9,0,0 -Example1_ref 7698 . T . PASS DP=79;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:28,29,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 7699 . G . PASS DP=82;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:57:57:0:0%:29,28,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7700 . C . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:31,29,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 7701 . A . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:32,29,0,0 0/0:.:25:25:0:0%:15,10,0,0 -Example1_ref 7702 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:32,29,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7703 . T . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:32,28,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7704 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 7705 . T . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 7706 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:34,30,0,0 0/0:.:26:26:0:0%:16,10,0,0 -Example1_ref 7707 . C . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:28:28:0:0%:17,11,0,0 -Example1_ref 7708 . C . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:22:22:0:0%:16,6,0,0 -Example1_ref 7709 . C T . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=7.1084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:59:58:1:1.69%:32,26,1,0 0/0:.:24:24:0:0%:16,8,0,0 -Example1_ref 7710 . G . PASS DP=83;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:61:61:0:0%:33,28,0,0 0/0:.:22:22:0:0%:13,9,0,0 -Example1_ref 7711 . T . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:34,28,0,0 0/0:.:24:24:0:0%:16,8,0,0 -Example1_ref 7712 . C . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:60:60:0:0%:33,27,0,0 0/0:.:26:26:0:0%:17,9,0,0 -Example1_ref 7713 . T . PASS DP=91;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:26:26:0:0%:17,9,0,0 -Example1_ref 7714 . G . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:26:26:0:0%:17,9,0,0 -Example1_ref 7715 . T . PASS DP=92;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:65:65:0:0%:37,28,0,0 0/0:.:27:27:0:0%:18,9,0,0 -Example1_ref 7716 . T . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:37,29,0,0 0/0:.:27:27:0:0%:18,9,0,0 -Example1_ref 7717 . G . PASS DP=86;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:63:63:0:0%:34,29,0,0 0/0:.:23:23:0:0%:15,8,0,0 -Example1_ref 7718 . G . PASS DP=87;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:62:62:0:0%:33,29,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7719 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:26:26:0:0%:17,9,0,0 -Example1_ref 7720 . C . PASS DP=88;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:36,28,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 7721 . C . PASS DP=85;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:64:64:0:0%:35,29,0,0 0/0:.:21:21:0:0%:13,8,0,0 -Example1_ref 7722 . A . PASS DP=90;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:37,29,0,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 7723 . G T . PASS DP=97;SS=0;SSC=0;GPV=1E0;SPV=7.3196E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:71:70:1:1.41%:40,30,1,0 0/0:.:26:26:0:0%:17,9,0,0 -Example1_ref 7724 . G T . PASS DP=93;SS=0;SSC=0;GPV=1E0;SPV=2.9032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:66:66:0:0%:40,26,0,0 0/0:.:27:26:1:3.7%:17,9,1,0 -Example1_ref 7725 . G T . PASS DP=96;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:72:71:1:1.39%:41,30,1,0 0/0:.:24:24:0:0%:15,9,0,0 -Example1_ref 7726 . A . PASS DP=102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:75:75:0:0%:45,30,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 7727 . T A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=2.6415E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:78:78:0:0%:47,31,0,0 0/0:.:28:27:1:3.57%:17,10,1,0 -Example1_ref 7728 . A . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:48,32,0,0 0/0:.:28:28:0:0%:17,11,0,0 -Example1_ref 7729 . T G . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=7.3874E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:81:1:1.22%:49,32,1,0 0/0:.:30:29:0:0%:18,11,0,0 -Example1_ref 7730 . A . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:49,33,0,0 0/0:.:30:30:0:0%:18,12,0,0 -Example1_ref 7731 . T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:52,32,0,0 0/0:.:30:30:0:0%:18,12,0,0 -Example1_ref 7732 . T . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:52,30,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 7733 . A . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:49,33,0,0 0/0:.:28:28:0:0%:18,10,0,0 -Example1_ref 7734 . C T . PASS DP=107;SS=0;SSC=0;GPV=1E0;SPV=7.5701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:80:1:1.23%:47,33,1,0 0/0:.:26:26:0:0%:17,9,0,0 -Example1_ref 7735 . A . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:49,32,0,0 0/0:.:28:28:0:0%:18,10,0,0 -Example1_ref 7736 . A . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:49,33,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 7737 . A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:80:80:0:0%:48,32,0,0 0/0:.:26:26:0:0%:17,9,0,0 -Example1_ref 7738 . G . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:50,32,0,0 0/0:.:27:27:0:0%:18,9,0,0 -Example1_ref 7739 . G . PASS DP=108;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:51,32,0,0 0/0:.:25:25:0:0%:16,9,0,0 -Example1_ref 7740 . C . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:51,32,0,0 0/0:.:27:27:0:0%:18,9,0,0 -Example1_ref 7741 . A . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:51,32,0,0 0/0:.:28:28:0:0%:18,10,0,0 -Example1_ref 7742 . A T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=7.5439E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:85:1:1.16%:53,32,1,0 0/0:.:28:28:0:0%:18,10,0,0 -Example1_ref 7743 . A . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:54,32,0,0 0/0:.:29:29:0:0%:18,11,0,0 -Example1_ref 7744 . G . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:52,32,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 7745 . T . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:53,32,0,0 0/0:.:30:30:0:0%:19,11,0,0 -Example1_ref 7746 . A . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:53,33,0,0 0/0:.:29:29:0:0%:19,10,0,0 -Example1_ref 7747 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:53,34,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 7748 . T . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:52,34,0,0 0/0:.:30:30:0:0%:19,11,0,0 -Example1_ref 7749 . A . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:52,34,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 7750 . T . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:53,33,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 7751 . T . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 7752 . T C . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=7.265E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:84:1:1.18%:53,31,1,0 0/0:.:32:32:0:0%:20,12,0,0 -Example1_ref 7753 . C . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:55,31,0,0 0/0:.:30:30:0:0%:18,12,0,0 -Example1_ref 7754 . T . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:52,33,0,0 0/0:.:32:32:0:0%:20,12,0,0 -Example1_ref 7755 . C . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:33:33:0:0%:20,13,0,0 -Example1_ref 7756 . G . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:32:32:0:0%:19,13,0,0 -Example1_ref 7757 . G . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:33:33:0:0%:21,12,0,0 -Example1_ref 7758 . G . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:55,33,0,0 0/0:.:33:33:0:0%:20,13,0,0 -Example1_ref 7759 . T . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:54,33,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 7760 . A . PASS DP=123;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:55,34,0,0 0/0:.:34:34:0:0%:20,14,0,0 -Example1_ref 7761 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:54,34,0,0 0/0:.:34:34:0:0%:20,14,0,0 -Example1_ref 7762 . G . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:55,34,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 7763 . G . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:54,34,0,0 0/0:.:33:33:0:0%:20,13,0,0 -Example1_ref 7764 . A . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:51,34,0,0 0/0:.:34:34:0:0%:19,15,0,0 -Example1_ref 7765 . G T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=7.2581E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:1:1.11%:54,35,1,0 0/0:.:34:34:0:0%:20,14,0,0 -Example1_ref 7766 . G . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:54,37,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 7767 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:56,37,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 7768 . C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:56,34,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7769 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:56,37,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 7770 . T . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:55,36,0,0 0/0:.:37:37:0:0%:22,15,0,0 -Example1_ref 7771 . G A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=2.9365E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:53,36,0,0 0/0:.:37:36:1:2.7%:21,15,1,0 -Example1_ref 7772 . A . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:55,37,0,0 0/0:.:36:36:0:0%:21,15,0,0 -Example1_ref 7773 . A . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:54,38,0,0 0/0:.:37:37:0:0%:22,15,0,0 -Example1_ref 7774 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:92:0:0%:54,38,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 7775 . A AG . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=7.1654E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:1:1.1%:53,37,0,1 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7776 . T . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:54,37,0,0 0/0:.:35:35:0:0%:22,13,0,0 -Example1_ref 7777 . C . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:54,36,0,0 0/0:.:35:35:0:0%:22,13,0,0 -Example1_ref 7778 . C . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:55,36,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 7779 . A . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:56,37,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7780 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:55,38,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 7781 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:36:36:0:0%:23,13,0,0 -Example1_ref 7782 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 7783 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7784 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7785 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 7786 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7787 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7788 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:53,39,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 7789 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:55,39,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7790 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:57,40,0,0 0/0:.:35:35:0:0%:22,13,0,0 -Example1_ref 7791 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:57,39,0,0 0/0:.:36:36:0:0%:23,13,0,0 -Example1_ref 7792 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:35:35:0:0%:22,13,0,0 -Example1_ref 7793 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:56,38,0,0 0/0:.:36:36:0:0%:23,13,0,0 -Example1_ref 7794 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:36:36:0:0%:21,15,0,0 -Example1_ref 7795 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 7796 . T . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:39:39:0:0%:24,15,0,0 -Example1_ref 7797 . C . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:53,40,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 7798 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:37:37:0:0%:22,15,0,0 -Example1_ref 7799 . G A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=7.2519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:94:1:1.05%:54,40,1,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 7800 . C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:54,39,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 7801 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 7802 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:57,40,0,0 0/0:.:37:37:0:0%:21,16,0,0 -Example1_ref 7803 . C . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 7804 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:57,40,0,0 0/0:.:37:37:0:0%:21,16,0,0 -Example1_ref 7805 . C . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:58,41,0,0 0/0:.:37:37:0:0%:21,16,0,0 -Example1_ref 7806 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:56,43,0,0 0/0:.:39:39:0:0%:23,16,0,0 -Example1_ref 7807 . A . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:58,43,0,0 0/0:.:40:40:0:0%:23,17,0,0 -Example1_ref 7808 . C . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:59,43,0,0 0/0:.:40:40:0:0%:23,17,0,0 -Example1_ref 7809 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:56,45,0,0 0/0:.:41:41:0:0%:22,19,0,0 -Example1_ref 7810 . G A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=2.8169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:57,45,0,0 0/0:.:40:39:1:2.5%:21,18,1,0 -Example1_ref 7811 . G . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:40:40:0:0%:22,18,0,0 -Example1_ref 7812 . G . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:57,45,0,0 0/0:.:39:39:0:0%:22,17,0,0 -Example1_ref 7813 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:59,44,0,0 0/0:.:42:42:0:0%:23,19,0,0 -Example1_ref 7814 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:41:41:0:0%:22,19,0,0 -Example1_ref 7815 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:60,46,0,0 0/0:.:39:39:0:0%:22,17,0,0 -Example1_ref 7816 . C . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:54,43,0,0 0/0:.:41:41:0:0%:22,19,0,0 -Example1_ref 7817 . C . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:58,45,0,0 0/0:.:40:40:0:0%:21,19,0,0 -Example1_ref 7818 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:61,45,0,0 0/0:.:43:43:0:0%:23,20,0,0 -Example1_ref 7819 . G . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:59,45,0,0 0/0:.:40:40:0:0%:20,20,0,0 -Example1_ref 7820 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:37:37:0:0%:20,17,0,0 -Example1_ref 7821 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:62,47,0,0 0/0:.:41:41:0:0%:21,20,0,0 -Example1_ref 7822 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 7823 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:63,48,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7824 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7825 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:65,49,0,0 0/0:.:42:42:0:0%:21,21,0,0 -Example1_ref 7826 . C . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 7827 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:65,50,0,0 0/0:.:42:42:0:0%:21,21,0,0 -Example1_ref 7828 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:69,49,0,0 0/0:.:43:43:0:0%:23,20,0,0 -Example1_ref 7829 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 7830 . G . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 7831 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 7832 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 7833 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 7834 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:69,50,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 7835 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 7836 . C . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 7837 . T A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=7.2561E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:71,47,0,1 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 7838 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:42:42:0:0%:21,21,0,0 -Example1_ref 7839 . C CCTGTCTCT . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=7.362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:71,48,1,0 0/0:.:43:43:0:0%:23,20,0,0 -Example1_ref 7840 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 7841 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 7842 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:70,51,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 7843 . C . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 7844 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:74,48,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 7845 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:73,48,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 7846 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:71,48,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 7847 . C A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=7.2289E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:71,48,1,0 0/0:.:46:46:0:0%:21,25,0,0 -Example1_ref 7848 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 7849 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:73,52,0,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 7850 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 7851 . T A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=2.7746E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:48:47:1:2.08%:24,23,0,1 -Example1_ref 7852 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:77,51,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 7853 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:76,53,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 7854 . T C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=2.6857E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:48:46:1:2.13%:23,23,0,1 -Example1_ref 7855 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:75,51,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 7856 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:76,52,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 7857 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:77,50,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 7858 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:76,50,0,0 0/0:.:47:46:0:0%:22,24,0,0 -Example1_ref 7859 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 7860 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:77,51,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 7861 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:46:46:0:0%:21,25,0,0 -Example1_ref 7862 . G A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=7.3373E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:1:0.81%:73,50,1,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 7863 . G T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=2.7381E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:71,51,0,0 0/0:.:46:45:1:2.17%:21,24,1,0 -Example1_ref 7864 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:71,51,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 7865 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 7866 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 7867 . T G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=2.6946E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:70,52,0,0 0/0:.:45:44:1:2.22%:21,23,0,1 -Example1_ref 7868 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:72,53,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 7869 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:46:46:0:0%:21,25,0,0 -Example1_ref 7870 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 7871 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:71,53,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 7872 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 7873 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 7874 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 7875 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 7876 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:71,58,0,0 0/0:.:46:46:0:0%:21,25,0,0 -Example1_ref 7877 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 7878 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:70,58,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 7879 . A ACTGTCTCT . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=7.3373E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:1:0.81%:65,58,1,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7880 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:66,58,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 7881 . G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 7882 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:65,55,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 7883 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:66,57,0,0 0/0:.:44:44:0:0%:21,23,0,0 -Example1_ref 7884 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:64,55,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 7885 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 7886 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 7887 . C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:71,61,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 7888 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:69,64,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 7889 . C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:75,61,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 7890 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:72,69,0,0 0/0:.:45:45:0:0%:18,27,0,0 -Example1_ref 7891 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:74,70,0,0 0/0:.:42:42:0:0%:16,26,0,0 -Example1_ref 7892 . T A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=7.7049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:73,67,0,1 0/0:.:42:42:0:0%:17,25,0,0 -Example1_ref 7893 . A T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=7.7957E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:73,71,1,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 7894 . A ACTGTC . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=4.6049E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:137:3:2.14%:70,67,3,0 0/0:.:41:41:0:0%:16,25,0,0 -Example1_ref 7895 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:68,70,0,0 0/0:.:40:40:0:0%:16,24,0,0 -Example1_ref 7896 . C . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:70,71,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 7897 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:69,73,0,0 0/0:.:39:39:0:0%:14,25,0,0 -Example1_ref 7898 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:69,73,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 7899 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:67,75,0,0 0/0:.:39:39:0:0%:14,25,0,0 -Example1_ref 7900 . G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:38:38:0:0%:13,25,0,0 -Example1_ref 7901 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 7902 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:67,73,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 7903 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:69,76,0,0 0/0:.:39:39:0:0%:14,25,0,0 -Example1_ref 7904 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:69,76,0,0 0/0:.:39:39:0:0%:14,25,0,0 -Example1_ref 7905 . C T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=7.8652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:67,72,1,0 0/0:.:38:38:0:0%:14,24,0,0 -Example1_ref 7906 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:39:39:0:0%:14,25,0,0 -Example1_ref 7907 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:68,75,0,0 0/0:.:41:41:0:0%:15,26,0,0 -Example1_ref 7908 . G A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=4.0591E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:66,68,0,1 0/0:.:40:39:1:2.5%:15,24,0,1 -Example1_ref 7909 . G T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=7.907E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:65,70,0,1 0/0:.:36:36:0:0%:13,23,0,0 -Example1_ref 7910 . G T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=2.2527E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:67,74,0,0 0/0:.:41:40:1:2.44%:13,27,1,0 -Example1_ref 7911 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:66,72,0,0 0/0:.:41:41:0:0%:15,26,0,0 -Example1_ref 7912 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:66,73,0,0 0/0:.:40:40:0:0%:14,26,0,0 -Example1_ref 7913 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:65,73,0,0 0/0:.:40:40:0:0%:13,27,0,0 -Example1_ref 7914 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:64,72,0,0 0/0:.:39:39:0:0%:12,27,0,0 -Example1_ref 7915 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:64,73,0,0 0/0:.:38:38:0:0%:12,26,0,0 -Example1_ref 7916 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:60,71,0,0 0/0:.:37:37:0:0%:11,26,0,0 -Example1_ref 7917 . C A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=2.0833E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:35:34:1:2.86%:11,23,0,1 -Example1_ref 7918 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:58,70,0,0 0/0:.:32:32:0:0%:11,21,0,0 -Example1_ref 7919 . C . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:34:34:0:0%:11,23,0,0 -Example1_ref 7920 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:36:36:0:0%:11,25,0,0 -Example1_ref 7921 . G A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=7.8313E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:129:1:0.77%:56,73,0,1 0/0:.:36:36:0:0%:10,26,0,0 -Example1_ref 7922 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:35:35:0:0%:10,25,0,0 -Example1_ref 7923 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:34:34:0:0%:10,24,0,0 -Example1_ref 7924 . C G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=7.8916E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:57,73,1,0 0/0:.:35:35:0:0%:10,25,0,0 -Example1_ref 7925 . C . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:57,74,0,0 0/0:.:35:35:0:0%:10,25,0,0 -Example1_ref 7926 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:57,76,0,0 0/0:.:37:37:0:0%:10,27,0,0 -Example1_ref 7927 . A C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=2.1893E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:37:36:1:2.7%:9,27,1,0 -Example1_ref 7928 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:55,76,0,0 0/0:.:36:36:0:0%:10,26,0,0 -Example1_ref 7929 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:57,77,0,0 0/0:.:36:36:0:0%:10,26,0,0 -Example1_ref 7930 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:56,74,0,0 0/0:.:37:37:0:0%:10,27,0,0 -Example1_ref 7931 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:57,77,0,0 0/0:.:35:35:0:0%:10,25,0,0 -Example1_ref 7932 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:54,78,0,0 0/0:.:36:36:0:0%:10,26,0,0 -Example1_ref 7933 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:55,79,0,0 0/0:.:35:35:0:0%:10,25,0,0 -Example1_ref 7934 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:54,78,0,0 0/0:.:31:31:0:0%:7,24,0,0 -Example1_ref 7935 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:30:30:0:0%:8,22,0,0 -Example1_ref 7936 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:58,77,0,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7937 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:58,76,0,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7938 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:57,76,0,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7939 . T A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=8.1098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:57,75,0,1 0/0:.:31:31:0:0%:8,23,0,0 -Example1_ref 7940 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:30:30:0:0%:8,22,0,0 -Example1_ref 7941 . G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:53,76,0,0 0/0:.:31:31:0:0%:8,23,0,0 -Example1_ref 7942 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:56,79,0,0 0/0:.:33:33:0:0%:8,25,0,0 -Example1_ref 7943 . C CCTGTCTCT . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=3.3331E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:57,76,1,0 0/0:.:30:29:1:3.33%:7,22,1,0 -Example1_ref 7944 . G . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:57,78,0,0 0/0:.:30:30:0:0%:6,24,0,0 -Example1_ref 7945 . A C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1.9653E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:59,80,0,0 0/0:.:34:33:1:2.94%:8,25,1,0 -Example1_ref 7946 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:59,81,0,0 0/0:.:33:33:0:0%:9,24,0,0 -Example1_ref 7947 . A G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1.8857E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:61,81,0,0 0/0:.:33:32:1:3.03%:7,25,1,0 -Example1_ref 7948 . T A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=8.1503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:60,80,1,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7949 . C A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1.8563E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:32:30:1:3.23%:7,23,0,1 -Example1_ref 7950 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:31:31:0:0%:7,24,0,0 -Example1_ref 7951 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:61,80,0,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7952 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:31:31:0:0%:8,23,0,0 -Example1_ref 7953 . G GCTGTCTCTT . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=8.2558E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:61,80,1,0 0/0:.:30:30:0:0%:7,23,0,0 -Example1_ref 7954 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:30:30:0:0%:7,23,0,0 -Example1_ref 7955 . G C . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=8.253E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:60,76,1,0 0/0:.:29:29:0:0%:7,22,0,0 -Example1_ref 7956 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:30:30:0:0%:7,23,0,0 -Example1_ref 7957 . C . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:59,73,0,0 0/0:.:28:28:0:0%:7,21,0,0 -Example1_ref 7958 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:31:31:0:0%:7,24,0,0 -Example1_ref 7959 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7960 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:32:32:0:0%:9,23,0,0 -Example1_ref 7961 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:33:33:0:0%:9,24,0,0 -Example1_ref 7962 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:29:29:0:0%:9,20,0,0 -Example1_ref 7963 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:63,76,0,0 0/0:.:33:33:0:0%:9,24,0,0 -Example1_ref 7964 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:62,77,0,0 0/0:.:33:33:0:0%:9,24,0,0 -Example1_ref 7965 . C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:62,80,0,0 0/0:.:35:35:0:0%:9,26,0,0 -Example1_ref 7966 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:62,81,0,0 0/0:.:34:34:0:0%:8,26,0,0 -Example1_ref 7967 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:62,78,0,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7968 . G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:58,80,0,0 0/0:.:33:33:0:0%:8,25,0,0 -Example1_ref 7969 . G A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=8.024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:55,78,0,1 0/0:.:33:33:0:0%:8,25,0,0 -Example1_ref 7970 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:60,80,0,0 0/0:.:35:35:0:0%:9,26,0,0 -Example1_ref 7971 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:60,79,0,0 0/0:.:35:35:0:0%:9,26,0,0 -Example1_ref 7972 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:62,77,0,0 0/0:.:32:32:0:0%:8,24,0,0 -Example1_ref 7973 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:59,78,0,0 0/0:.:34:34:0:0%:8,26,0,0 -Example1_ref 7974 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:61,80,0,0 0/0:.:35:35:0:0%:9,26,0,0 -Example1_ref 7975 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:63,80,0,0 0/0:.:35:35:0:0%:11,24,0,0 -Example1_ref 7976 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:65,81,0,0 0/0:.:37:37:0:0%:11,26,0,0 -Example1_ref 7977 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:0:0%:66,79,0,0 0/0:.:37:37:0:0%:11,26,0,0 -Example1_ref 7978 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:66,79,0,0 0/0:.:37:37:0:0%:11,26,0,0 -Example1_ref 7979 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:69,80,0,0 0/0:.:35:35:0:0%:11,24,0,0 -Example1_ref 7980 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:68,80,0,0 0/0:.:36:36:0:0%:10,26,0,0 -Example1_ref 7981 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:67,81,0,0 0/0:.:37:37:0:0%:11,26,0,0 -Example1_ref 7982 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:69,81,0,0 0/0:.:39:39:0:0%:12,27,0,0 -Example1_ref 7983 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:69,82,0,0 0/0:.:40:40:0:0%:12,28,0,0 -Example1_ref 7984 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:68,82,0,0 0/0:.:40:40:0:0%:12,28,0,0 -Example1_ref 7985 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:69,86,0,0 0/0:.:41:41:0:0%:11,30,0,0 -Example1_ref 7986 . A ACCTGTCT . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=7.9602E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:70,89,1,0 0/0:.:41:41:0:0%:11,30,0,0 -Example1_ref 7987 . C . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:77,86,0,0 0/0:.:44:43:0:0%:12,31,0,0 -Example1_ref 7988 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:76,84,0,0 0/0:.:44:43:0:0%:12,31,0,0 -Example1_ref 7989 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:75,85,0,0 0/0:.:43:42:0:0%:12,30,0,0 -Example1_ref 7990 . C CCTG . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=7.9147E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:76,90,1,0 0/0:.:44:44:0:0%:14,30,0,0 -Example1_ref 7991 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:0:0%:76,88,0,0 0/0:.:45:45:0:0%:13,32,0,0 -Example1_ref 7992 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:76,91,0,0 0/0:.:46:46:0:0%:14,32,0,0 -Example1_ref 7993 . C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:77,86,0,0 0/0:.:43:43:0:0%:14,29,0,0 -Example1_ref 7994 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:77,90,0,0 0/0:.:44:44:0:0%:13,31,0,0 -Example1_ref 7995 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:80,91,0,0 0/0:.:51:51:0:0%:16,35,0,0 -Example1_ref 7996 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:78,87,0,0 0/0:.:49:49:0:0%:17,32,0,0 -Example1_ref 7997 . G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:80,94,0,0 0/0:.:55:55:0:0%:19,36,0,0 -Example1_ref 7998 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:81,99,0,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 7999 . AACAAGATCTACATATAC A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=2.2785E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:82,101,0,0 0/0:.:54:53:1:1.85%:19,34,0,1 -Example1_ref 8000 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:82,103,0,0 0/0:.:57:57:0:0%:19,38,0,0 -Example1_ref 8001 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:83,102,0,0 0/0:.:58:58:0:0%:20,38,0,0 -Example1_ref 8002 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:83,104,0,0 0/0:.:58:58:0:0%:20,38,0,0 -Example1_ref 8003 . A G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.6829E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:84,104,0,1 0/0:.:57:57:0:0%:20,37,0,0 -Example1_ref 8004 . G . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:90,101,0,0 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 8005 . AT A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=2.4806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:91,103,0,0 0/0:.:64:63:1:1.56%:24,39,1,0 -Example1_ref 8006 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:93,100,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 8007 . C . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:92,100,0,0 0/0:.:65:65:0:0%:27,38,0,0 -Example1_ref 8008 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:91,100,0,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 8009 . A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:100,108,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 8010 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:101,103,0,0 0/0:.:74:74:0:0%:32,42,0,0 -Example1_ref 8011 . A ATCTGTCTCT . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=7.3835E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:1:0.49%:102,103,1,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 8012 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:101,101,0,0 0/0:.:74:74:0:0%:32,42,0,0 -Example1_ref 8013 . A T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=7.4113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:104,104,0,1 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 8014 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:102,101,0,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 8015 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:74:74:0:0%:33,41,0,0 -Example1_ref 8016 . C . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:105,103,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8017 . A T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.3944E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:105,104,1,0 0/0:.:74:74:0:0%:34,40,0,0 -Example1_ref 8018 . C . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:0:0%:103,103,0,0 0/0:.:76:76:0:0%:35,41,0,0 -Example1_ref 8019 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:74:74:0:0%:35,39,0,0 -Example1_ref 8020 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:100,104,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8021 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:100,107,0,0 0/0:.:76:76:0:0%:36,40,0,0 -Example1_ref 8022 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:112,107,0,0 0/0:.:78:78:0:0%:38,40,0,0 -Example1_ref 8023 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:112,109,0,0 0/0:.:77:77:0:0%:38,39,0,0 -Example1_ref 8024 . C A . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=5.423E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:222:2:0.89%:114,108,0,2 0/0:.:80:80:0:0%:39,41,0,0 -Example1_ref 8025 . T . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:115,115,0,0 0/0:.:81:81:0:0%:39,42,0,0 -Example1_ref 8026 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:116,117,0,0 0/0:.:81:81:0:0%:39,42,0,0 -Example1_ref 8027 . C . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:115,110,0,0 0/0:.:80:80:0:0%:39,41,0,0 -Example1_ref 8028 . A . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:116,114,0,0 0/0:.:77:77:0:0%:38,39,0,0 -Example1_ref 8029 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:115,117,0,0 0/0:.:79:79:0:0%:38,41,0,0 -Example1_ref 8030 . G . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:114,116,0,0 0/0:.:77:77:0:0%:37,40,0,0 -Example1_ref 8031 . T A . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=7.5244E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:116,114,1,0 0/0:.:76:76:0:0%:38,38,0,0 -Example1_ref 8032 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:114,114,0,0 0/0:.:78:78:0:0%:38,40,0,0 -Example1_ref 8033 . G . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:115,112,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 8034 . G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 8035 . C A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=4.4069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:116,103,0,1 0/0:.:74:73:1:1.35%:39,34,0,1 -Example1_ref 8036 . A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 8037 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:115,119,0,0 0/0:.:84:84:0:0%:39,45,0,0 -Example1_ref 8038 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:116,122,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 8039 . G A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.4522E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:113,120,0,1 0/0:.:80:80:0:0%:35,45,0,0 -Example1_ref 8040 . C . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:110,116,0,0 0/0:.:79:79:0:0%:35,44,0,0 -Example1_ref 8041 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:111,126,0,0 0/0:.:81:81:0:0%:36,45,0,0 -Example1_ref 8042 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:112,126,0,0 0/0:.:82:82:0:0%:37,45,0,0 -Example1_ref 8043 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:113,122,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 8044 . T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:114,124,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 8045 . T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:115,125,0,0 0/0:.:81:81:0:0%:36,45,0,0 -Example1_ref 8046 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:115,126,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 8047 . C . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:114,117,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 8048 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 8049 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:86:86:0:0%:39,47,0,0 -Example1_ref 8050 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:114,122,0,0 0/0:.:84:84:0:0%:39,45,0,0 -Example1_ref 8051 . T C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=7.3476E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:115,125,0,1 0/0:.:87:87:0:0%:41,46,0,0 -Example1_ref 8052 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 8053 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:117,124,0,0 0/0:.:87:87:0:0%:40,47,0,0 -Example1_ref 8054 . G . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:116,125,0,0 0/0:.:90:90:0:0%:40,50,0,0 -Example1_ref 8055 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:117,126,0,0 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 8056 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:117,125,0,0 0/0:.:90:90:0:0%:40,50,0,0 -Example1_ref 8057 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:118,126,0,0 0/0:.:90:90:0:0%:42,48,0,0 -Example1_ref 8058 . A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:119,124,0,0 0/0:.:92:92:0:0%:43,49,0,0 -Example1_ref 8059 . A T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.2836E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:118,125,1,0 0/0:.:92:91:0:0%:43,48,0,0 -Example1_ref 8060 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:120,122,0,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 8061 . T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:117,124,0,0 0/0:.:91:91:0:0%:41,50,0,0 -Example1_ref 8062 . G A . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=4.6606E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:117,124,1,0 0/0:.:89:88:1:1.12%:41,47,0,1 -Example1_ref 8063 . A T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=2.7879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:118,120,0,0 0/0:.:92:91:1:1.09%:42,49,1,0 -Example1_ref 8064 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:121,117,0,0 0/0:.:92:92:0:0%:43,49,0,0 -Example1_ref 8065 . AT A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.2289E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:119,120,1,0 0/0:.:92:92:0:0%:43,49,0,0 -Example1_ref 8066 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:119,120,0,0 0/0:.:91:91:0:0%:42,49,0,0 -Example1_ref 8067 . T . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:122,120,0,0 0/0:.:92:92:0:0%:43,49,0,0 -Example1_ref 8068 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:126,121,0,0 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 8069 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:126,118,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 8070 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:125,117,0,0 0/0:.:96:96:0:0%:45,51,0,0 -Example1_ref 8071 . G T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=7.172E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:127,118,1,0 0/0:.:97:97:0:0%:47,50,0,0 -Example1_ref 8072 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:129,118,0,0 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 8073 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:130,114,0,0 0/0:.:96:96:0:0%:46,50,0,0 -Example1_ref 8074 . T . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:130,116,0,0 0/0:.:95:95:0:0%:46,49,0,0 -Example1_ref 8075 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:129,120,0,0 0/0:.:97:97:0:0%:46,51,0,0 -Example1_ref 8076 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:127,116,0,0 0/0:.:95:95:0:0%:44,51,0,0 -Example1_ref 8077 . A T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=7.1217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:1:0.42%:126,113,1,0 0/0:.:97:97:0:0%:47,50,0,0 -Example1_ref 8078 . G . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:0:0%:128,110,0,0 0/0:.:98:98:0:0%:47,51,0,0 -Example1_ref 8079 . T . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:123,105,0,0 0/0:.:100:100:0:0%:49,51,0,0 -Example1_ref 8080 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:127,107,0,0 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 8081 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:127,110,0,0 0/0:.:101:101:0:0%:49,52,0,0 -Example1_ref 8082 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:127,108,0,0 0/0:.:101:101:0:0%:49,52,0,0 -Example1_ref 8083 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:127,109,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 8084 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:130,105,0,0 0/0:.:103:103:0:0%:51,52,0,0 -Example1_ref 8085 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:128,107,0,0 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 8086 . A T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=3.0612E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:129,109,0,0 0/0:.:105:104:1:0.95%:52,52,0,1 -Example1_ref 8087 . G T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=6.9851E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:131,102,1,0 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 8088 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:131,105,0,0 0/0:.:104:104:0:0%:53,51,0,0 -Example1_ref 8089 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:132,104,0,0 0/0:.:101:101:0:0%:50,51,0,0 -Example1_ref 8090 . T . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:132,103,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 8091 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:135,104,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 8092 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:133,104,0,0 0/0:.:107:107:0:0%:55,52,0,0 -Example1_ref 8093 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:132,104,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 8094 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:132,104,0,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 8095 . T . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:135,103,0,0 0/0:.:109:108:0:0%:56,52,0,0 -Example1_ref 8096 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:131,105,0,0 0/0:.:110:109:0:0%:56,53,0,0 -Example1_ref 8097 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:135,104,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 8098 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:136,104,0,0 0/0:.:106:106:0:0%:52,54,0,0 -Example1_ref 8099 . C . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:136,103,0,0 0/0:.:106:106:0:0%:54,52,0,0 -Example1_ref 8100 . A G . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=6.8481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:137,101,0,1 0/0:.:110:110:0:0%:56,54,0,0 -Example1_ref 8101 . T G . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=3.1897E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:136,101,0,0 0/0:.:111:110:1:0.9%:57,53,0,1 -Example1_ref 8102 . G A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=5.3947E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:135,101,1,0 0/0:.:112:111:1:0.89%:58,53,0,1 -Example1_ref 8103 . G T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=6.8286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:135,103,1,0 0/0:.:111:111:0:0%:57,54,0,0 -Example1_ref 8104 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:140,103,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 8105 . A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:138,108,0,0 0/0:.:115:115:0:0%:61,54,0,0 -Example1_ref 8106 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:138,105,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 8107 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:137,108,0,0 0/0:.:115:115:0:0%:62,53,0,0 -Example1_ref 8108 . A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:135,109,0,0 0/0:.:117:117:0:0%:63,54,0,0 -Example1_ref 8109 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:138,107,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 8110 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:141,109,0,0 0/0:.:114:114:0:0%:61,53,0,0 -Example1_ref 8111 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:143,104,0,0 0/0:.:113:113:0:0%:60,53,0,0 -Example1_ref 8112 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:139,102,0,0 0/0:.:115:115:0:0%:63,52,0,0 -Example1_ref 8113 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:138,99,0,0 0/0:.:115:115:0:0%:63,52,0,0 -Example1_ref 8114 . T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:142,102,0,0 0/0:.:113:113:0:0%:62,51,0,0 -Example1_ref 8115 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:145,105,0,0 0/0:.:117:117:0:0%:64,53,0,0 -Example1_ref 8116 . T . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:145,104,0,0 0/0:.:116:116:0:0%:63,53,0,0 -Example1_ref 8117 . C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:144,101,0,0 0/0:.:117:117:0:0%:64,53,0,0 -Example1_ref 8118 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:0:0%:143,106,0,0 0/0:.:115:115:0:0%:62,53,0,0 -Example1_ref 8119 . A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:141,106,0,0 0/0:.:116:116:0:0%:63,53,0,0 -Example1_ref 8120 . G . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:141,105,0,0 0/0:.:115:115:0:0%:62,53,0,0 -Example1_ref 8121 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:145,105,0,0 0/0:.:117:117:0:0%:64,53,0,0 -Example1_ref 8122 . C A . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=3.2591E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:143,99,0,0 0/0:.:117:116:1:0.85%:63,53,1,0 -Example1_ref 8123 . C . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:140,102,0,0 0/0:.:113:113:0:0%:61,52,0,0 -Example1_ref 8124 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:117:117:0:0%:64,53,0,0 -Example1_ref 8125 . G . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:142,104,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 8126 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:143,102,0,0 0/0:.:115:115:0:0%:63,52,0,0 -Example1_ref 8127 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:143,102,0,0 0/0:.:120:120:0:0%:68,52,0,0 -Example1_ref 8128 . A . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:146,104,0,0 0/0:.:121:121:0:0%:68,53,0,0 -Example1_ref 8129 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:145,102,0,0 0/0:.:121:121:0:0%:69,52,0,0 -Example1_ref 8130 . C . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:144,103,0,0 0/0:.:120:120:0:0%:67,53,0,0 -Example1_ref 8131 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:145,101,0,0 0/0:.:120:120:0:0%:67,53,0,0 -Example1_ref 8132 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:122:122:0:0%:69,53,0,0 -Example1_ref 8133 . C . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:145,102,0,0 0/0:.:122:122:0:0%:69,53,0,0 -Example1_ref 8134 . G . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:141,104,0,0 0/0:.:120:120:0:0%:67,53,0,0 -Example1_ref 8135 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:143,104,0,0 0/0:.:119:119:0:0%:67,52,0,0 -Example1_ref 8136 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:142,104,0,0 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 8137 . T . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:142,105,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 8138 . G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 8139 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:144,105,0,0 0/0:.:119:119:0:0%:67,52,0,0 -Example1_ref 8140 . C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:141,105,0,0 0/0:.:116:116:0:0%:65,51,0,0 -Example1_ref 8141 . C . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:142,104,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 8142 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:145,108,0,0 0/0:.:119:118:0:0%:66,52,0,0 -Example1_ref 8143 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:144,104,0,0 0/0:.:120:119:0:0%:67,52,0,0 -Example1_ref 8144 . G A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=3.2692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:140,105,0,0 0/0:.:120:118:1:0.84%:65,53,1,0 -Example1_ref 8145 . G C . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=6.7335E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:234:1:0.43%:127,107,0,1 0/0:.:115:114:0:0%:62,52,0,0 -Example1_ref 8146 . G T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=5.4233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:134,106,1,0 0/0:.:116:114:1:0.87%:62,52,1,0 -Example1_ref 8147 . G T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=3.1956E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:138,109,0,0 0/0:.:116:115:1:0.86%:62,53,1,0 -Example1_ref 8148 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:141,110,0,0 0/0:.:118:118:0:0%:65,53,0,0 -Example1_ref 8149 . C CAG . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=6.8194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:144,108,0,1 0/0:.:118:118:0:0%:66,52,0,0 -Example1_ref 8150 . A C . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=6.8182E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:145,109,0,1 0/0:.:119:119:0:0%:66,53,0,0 -Example1_ref 8151 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:149,111,0,0 0/0:.:122:122:0:0%:68,54,0,0 -Example1_ref 8152 . T . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:148,110,0,0 0/0:.:123:123:0:0%:68,55,0,0 -Example1_ref 8153 . C A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=6.7895E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:147,110,0,1 0/0:.:122:122:0:0%:68,54,0,0 -Example1_ref 8154 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:150,114,0,0 0/0:.:123:123:0:0%:69,54,0,0 -Example1_ref 8155 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:150,111,0,0 0/0:.:123:123:0:0%:69,54,0,0 -Example1_ref 8156 . G T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=6.8325E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:149,111,1,0 0/0:.:121:121:0:0%:67,54,0,0 -Example1_ref 8157 . T G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=6.8814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:153,113,0,1 0/0:.:121:121:0:0%:69,52,0,0 -Example1_ref 8158 . C A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=3.1926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:149,109,0,0 0/0:.:122:120:1:0.83%:66,54,1,0 -Example1_ref 8159 . C . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:149,110,0,0 0/0:.:123:123:0:0%:68,55,0,0 -Example1_ref 8160 . G . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:150,112,0,0 0/0:.:121:121:0:0%:66,55,0,0 -Example1_ref 8161 . G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:146,114,0,0 0/0:.:120:120:0:0%:65,55,0,0 -Example1_ref 8162 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:146,117,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 8163 . T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:150,119,0,0 0/0:.:122:122:0:0%:67,55,0,0 -Example1_ref 8164 . G . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:143,116,0,0 0/0:.:120:120:0:0%:65,55,0,0 -Example1_ref 8165 . G T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=6.8718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:149,118,1,0 0/0:.:122:122:0:0%:66,56,0,0 -Example1_ref 8166 . A C . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=6.9091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:265:1:0.38%:152,113,1,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 8167 . T G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=6.9E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:157,118,0,1 0/0:.:124:124:0:0%:68,56,0,0 -Example1_ref 8168 . G GTCTCT . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=6.875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:274:1:0.36%:155,119,1,0 0/0:.:125:125:0:0%:68,57,0,0 -Example1_ref 8169 . T . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:0:0%:156,117,0,0 0/0:.:125:125:0:0%:68,57,0,0 -Example1_ref 8170 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:157,120,0,0 0/0:.:123:123:0:0%:66,57,0,0 -Example1_ref 8171 . T C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=5.2788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:155,119,0,1 0/0:.:125:124:1:0.8%:67,57,1,0 -Example1_ref 8172 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:0:0%:155,121,0,0 0/0:.:126:125:0:0%:67,58,0,0 -Example1_ref 8173 . A G . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=6.855E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:153,125,0,1 0/0:.:128:128:0:0%:68,60,0,0 -Example1_ref 8174 . C . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:151,120,0,0 0/0:.:128:128:0:0%:72,56,0,0 -Example1_ref 8175 . G . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:151,117,0,0 0/0:.:121:121:0:0%:67,54,0,0 -Example1_ref 8176 . G T . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=6.7316E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:258:2:0.77%:145,113,2,0 0/0:.:117:116:1:0.85%:60,56,1,0 -Example1_ref 8177 . G T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=3.2041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:144,119,0,0 0/0:.:125:123:1:0.81%:68,55,1,0 -Example1_ref 8178 . A G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=6.7488E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:154,119,1,0 0/0:.:132:132:0:0%:75,57,0,0 -Example1_ref 8179 . GT G . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=3.2126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:159,122,0,0 0/0:.:134:132:1:0.75%:76,56,0,1 -Example1_ref 8180 . T C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=3.3175E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:160,122,0,0 0/0:.:142:139:1:0.71%:80,59,1,0 -Example1_ref 8181 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:161,131,0,0 0/0:.:148:147:0:0%:85,62,0,0 -Example1_ref 8182 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:164,130,0,0 0/0:.:148:147:0:0%:84,63,0,0 -Example1_ref 8183 . A G . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:168,137,1,0 0/0:.:154:153:0:0%:86,67,0,0 -Example1_ref 8184 . T TCTG . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=5.6654E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:163,141,1,0 0/0:.:159:157:1:0.63%:87,70,1,0 -Example1_ref 8185 . A ACCTGT . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=4.1003E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:300:2:0.66%:158,142,2,0 0/0:.:153:150:2:1.32%:82,68,2,0 -Example1_ref 8186 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:158,145,0,0 0/0:.:147:147:0:0%:79,68,0,0 -Example1_ref 8187 . T A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=4.3984E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:286:2:0.69%:153,133,0,2 0/0:.:146:146:0:0%:79,67,0,0 -Example1_ref 8188 . G GTCTCTT . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=6.6824E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:283:1:0.35%:152,131,1,0 0/0:.:141:141:0:0%:77,64,0,0 -Example1_ref 8189 . A AC . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=5.691E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:159,129,1,0 0/0:.:151:150:1:0.66%:84,66,1,0 -Example1_ref 8190 . T C . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=3.303E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:163,131,0,0 0/0:.:145:144:1:0.69%:83,61,1,0 -Example1_ref 8191 . G GTCT . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=6.9641E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:288:2:0.69%:158,130,2,0 0/0:.:141:140:1:0.71%:78,62,1,0 -Example1_ref 8192 . C CTGTCT . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=6.7442E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:1:0.34%:160,129,1,0 0/0:.:140:140:0:0%:81,59,0,0 -Example1_ref 8193 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:160,133,0,0 0/0:.:143:143:0:0%:81,62,0,0 -Example1_ref 8194 . T A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=5.5812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:287:1:0.35%:156,131,0,1 0/0:.:145:144:1:0.69%:82,62,0,1 -Example1_ref 8195 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:153,132,0,0 0/0:.:141:141:0:0%:80,61,0,0 -Example1_ref 8196 . T . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:151,128,0,0 0/0:.:140:140:0:0%:79,61,0,0 -Example1_ref 8197 . C A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=6.7221E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:282:1:0.35%:152,130,1,0 0/0:.:138:138:0:0%:80,58,0,0 -Example1_ref 8198 . C A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=3.3976E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:150,124,0,0 0/0:.:141:140:1:0.71%:80,60,1,0 -Example1_ref 8199 . G GAAACAAAACA . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=6.6176E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:142,127,1,0 0/0:.:138:138:0:0%:76,62,0,0 -Example1_ref 8200 . C . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:141,125,0,0 0/0:.:132:132:0:0%:73,59,0,0 -Example1_ref 8201 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:138,129,0,0 0/0:.:137:137:0:0%:77,60,0,0 -Example1_ref 8202 . C . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:141,123,0,0 0/0:.:138:138:0:0%:76,62,0,0 -Example1_ref 8203 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:141,132,0,0 0/0:.:139:139:0:0%:75,64,0,0 -Example1_ref 8204 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:143,137,0,0 0/0:.:138:138:0:0%:73,65,0,0 -Example1_ref 8205 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:144,131,0,0 0/0:.:135:135:0:0%:74,61,0,0 -Example1_ref 8206 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:144,133,0,0 0/0:.:139:139:0:0%:75,64,0,0 -Example1_ref 8207 . C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:141,136,0,0 0/0:.:138:138:0:0%:72,66,0,0 -Example1_ref 8208 . C A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=9.4728E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:263:6:2.23%:138,125,2,4 0/0:.:139:138:1:0.72%:73,65,0,1 -Example1_ref 8209 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:143,139,0,0 0/0:.:140:140:0:0%:73,67,0,0 -Example1_ref 8210 . C A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=6.6197E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:1:0.35%:141,140,0,1 0/0:.:144:144:0:0%:76,68,0,0 -Example1_ref 8211 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:138,142,0,0 0/0:.:141:141:0:0%:73,68,0,0 -Example1_ref 8212 . G . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:135,142,0,0 0/0:.:139:139:0:0%:71,68,0,0 -Example1_ref 8213 . G . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:135,134,0,0 0/0:.:134:134:0:0%:67,67,0,0 -Example1_ref 8214 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:130,134,0,0 0/0:.:137:137:0:0%:69,68,0,0 -Example1_ref 8215 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:132,134,0,0 0/0:.:137:137:0:0%:69,68,0,0 -Example1_ref 8216 . G T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=6.6259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:134,136,1,0 0/0:.:138:138:0:0%:69,69,0,0 -Example1_ref 8217 . C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:137,136,0,0 0/0:.:142:142:0:0%:74,68,0,0 -Example1_ref 8218 . AT A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=6.611E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:139,137,1,0 0/0:.:142:142:0:0%:73,69,0,0 -Example1_ref 8219 . T G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=6.6268E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:140,136,0,1 0/0:.:141:141:0:0%:74,67,0,0 -Example1_ref 8220 . T . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:137,136,0,0 0/0:.:144:144:0:0%:74,70,0,0 -Example1_ref 8221 . G . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:139,137,0,0 0/0:.:146:146:0:0%:76,70,0,0 -Example1_ref 8222 . T C . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=6.5647E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:144,134,0,1 0/0:.:146:146:0:0%:77,69,0,0 -Example1_ref 8223 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:144,134,0,0 0/0:.:144:144:0:0%:75,69,0,0 -Example1_ref 8224 . T TAAGAGACAG . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=3.4375E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:143,130,0,0 0/0:.:143:142:1:0.7%:74,68,0,1 -Example1_ref 8225 . C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:147,130,0,0 0/0:.:141:141:0:0%:75,66,0,0 -Example1_ref 8226 . A T . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=6.6024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:144,129,0,1 0/0:.:141:141:0:0%:75,66,0,0 -Example1_ref 8227 . T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:143,129,0,0 0/0:.:141:141:0:0%:76,65,0,0 -Example1_ref 8228 . C . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:146,128,0,0 0/0:.:143:143:0:0%:79,64,0,0 -Example1_ref 8229 . T . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:145,127,0,0 0/0:.:144:144:0:0%:79,65,0,0 -Example1_ref 8230 . G C . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=3.4375E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:148,125,0,0 0/0:.:144:142:1:0.7%:78,64,1,0 -Example1_ref 8231 . T C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=3.4217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:149,124,0,0 0/0:.:142:141:1:0.7%:76,65,1,0 -Example1_ref 8232 . T C . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=3.4524E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:148,127,0,0 0/0:.:146:144:1:0.69%:78,66,1,0 -Example1_ref 8233 . A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:153,128,0,0 0/0:.:147:147:0:0%:81,66,0,0 -Example1_ref 8234 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:151,125,0,0 0/0:.:144:144:0:0%:79,65,0,0 -Example1_ref 8235 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:154,128,0,0 0/0:.:147:147:0:0%:82,65,0,0 -Example1_ref 8236 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:152,126,0,0 0/0:.:144:144:0:0%:82,62,0,0 -Example1_ref 8237 . T . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:153,127,0,0 0/0:.:147:147:0:0%:82,65,0,0 -Example1_ref 8238 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:151,126,0,0 0/0:.:145:145:0:0%:81,64,0,0 -Example1_ref 8239 . G A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=6.5926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:143,123,0,1 0/0:.:138:138:0:0%:77,61,0,0 -Example1_ref 8240 . A AC . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=6.5133E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:146,122,1,0 0/0:.:144:144:0:0%:81,63,0,0 -Example1_ref 8241 . C . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:144,122,0,0 0/0:.:143:143:0:0%:80,63,0,0 -Example1_ref 8242 . T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:150,120,0,0 0/0:.:139:139:0:0%:80,59,0,0 -Example1_ref 8243 . C A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=6.6176E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:149,120,1,0 0/0:.:138:138:0:0%:80,58,0,0 -Example1_ref 8244 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:146,124,0,0 0/0:.:143:143:0:0%:80,63,0,0 -Example1_ref 8245 . C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:149,121,0,0 0/0:.:140:140:0:0%:80,60,0,0 -Example1_ref 8246 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:147,128,0,0 0/0:.:143:143:0:0%:79,64,0,0 -Example1_ref 8247 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:141,127,0,0 0/0:.:142:142:0:0%:78,64,0,0 -Example1_ref 8248 . A C . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=3.4398E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:141,126,0,0 0/0:.:140:139:1:0.71%:76,63,1,0 -Example1_ref 8249 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:143,126,0,0 0/0:.:144:144:0:0%:80,64,0,0 -Example1_ref 8250 . A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:146,125,0,0 0/0:.:144:143:0:0%:80,63,0,0 -Example1_ref 8251 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:147,124,0,0 0/0:.:140:140:0:0%:82,58,0,0 -Example1_ref 8252 . C . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:146,129,0,0 0/0:.:144:144:0:0%:82,62,0,0 -Example1_ref 8253 . G . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:144,128,0,0 0/0:.:143:143:0:0%:79,64,0,0 -Example1_ref 8254 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:142,127,0,0 0/0:.:144:144:0:0%:81,63,0,0 -Example1_ref 8255 . G . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:140,130,0,0 0/0:.:141:141:0:0%:76,65,0,0 -Example1_ref 8256 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:143,131,0,0 0/0:.:143:143:0:0%:78,65,0,0 -Example1_ref 8257 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:142,131,0,0 0/0:.:145:145:0:0%:81,64,0,0 -Example1_ref 8258 . T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:144,128,0,0 0/0:.:141:141:0:0%:78,63,0,0 -Example1_ref 8259 . C . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:146,130,0,0 0/0:.:139:139:0:0%:77,62,0,0 -Example1_ref 8260 . A T . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=6.611E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:143,133,1,0 0/0:.:142:142:0:0%:78,64,0,0 -Example1_ref 8261 . A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:145,134,0,0 0/0:.:144:144:0:0%:80,64,0,0 -Example1_ref 8262 . C . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:145,130,0,0 0/0:.:138:138:0:0%:78,60,0,0 -Example1_ref 8263 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:141,130,0,0 0/0:.:141:141:0:0%:79,62,0,0 -Example1_ref 8264 . C . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:140,135,0,0 0/0:.:142:142:0:0%:79,63,0,0 -Example1_ref 8265 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:139,134,0,0 0/0:.:143:143:0:0%:80,63,0,0 -Example1_ref 8266 . G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:139,133,0,0 0/0:.:141:141:0:0%:79,62,0,0 -Example1_ref 8267 . T C . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=6.5558E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:144,131,1,0 0/0:.:145:145:0:0%:82,63,0,0 -Example1_ref 8268 . C . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:137,132,0,0 0/0:.:142:142:0:0%:79,63,0,0 -Example1_ref 8269 . A G . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=6.5947E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:140,134,1,0 0/0:.:142:142:0:0%:78,64,0,0 -Example1_ref 8270 . T C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=5.6378E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:136,130,0,1 0/0:.:137:136:1:0.73%:75,61,1,0 -Example1_ref 8271 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:134,130,0,0 0/0:.:138:138:0:0%:76,62,0,0 -Example1_ref 8272 . A AC . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1.1605E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:136,134,0,0 0/0:.:140:138:2:1.43%:75,63,2,0 -Example1_ref 8273 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:139,133,0,0 0/0:.:136:136:0:0%:73,63,0,0 -Example1_ref 8274 . T A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=6.6015E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:137,132,0,1 0/0:.:139:139:0:0%:76,63,0,0 -Example1_ref 8275 . T A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=3.3416E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:139,128,0,0 0/0:.:135:133:1:0.75%:73,60,0,1 -Example1_ref 8276 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:137,132,0,0 0/0:.:135:135:0:0%:73,62,0,0 -Example1_ref 8277 . C T . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=6.642E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:138,130,0,1 0/0:.:136:136:0:0%:76,60,0,0 -Example1_ref 8278 . T C . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=3.3753E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:135,128,0,0 0/0:.:134:133:1:0.75%:75,58,1,0 -Example1_ref 8279 . C A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=3.4005E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:131,131,0,0 0/0:.:136:134:1:0.74%:75,59,0,1 -Example1_ref 8280 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:135,133,0,0 0/0:.:135:135:0:0%:73,62,0,0 -Example1_ref 8281 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:134,133,0,0 0/0:.:128:128:0:0%:70,58,0,0 -Example1_ref 8282 . C . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:130,132,0,0 0/0:.:131:131:0:0%:71,60,0,0 -Example1_ref 8283 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:132,132,0,0 0/0:.:130:130:0:0%:71,59,0,0 -Example1_ref 8284 . G . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:127,133,0,0 0/0:.:129:129:0:0%:70,59,0,0 -Example1_ref 8285 . C . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:129,131,0,0 0/0:.:128:128:0:0%:70,58,0,0 -Example1_ref 8286 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:128,131,0,0 0/0:.:130:130:0:0%:71,59,0,0 -Example1_ref 8287 . A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:126,135,0,0 0/0:.:130:130:0:0%:72,58,0,0 -Example1_ref 8288 . C . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:128,130,0,0 0/0:.:128:128:0:0%:70,58,0,0 -Example1_ref 8289 . C T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=6.7008E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:126,135,1,0 0/0:.:129:129:0:0%:71,58,0,0 -Example1_ref 8290 . G . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:128,134,0,0 0/0:.:126:126:0:0%:70,56,0,0 -Example1_ref 8291 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:123,134,0,0 0/0:.:125:125:0:0%:69,56,0,0 -Example1_ref 8292 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:123,136,0,0 0/0:.:128:128:0:0%:67,61,0,0 -Example1_ref 8293 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:122,132,0,0 0/0:.:128:128:0:0%:67,61,0,0 -Example1_ref 8294 . G . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:126,132,0,0 0/0:.:125:125:0:0%:65,60,0,0 -Example1_ref 8295 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:117,130,0,0 0/0:.:121:121:0:0%:63,58,0,0 -Example1_ref 8296 . G . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:123:123:0:0%:64,59,0,0 -Example1_ref 8297 . T . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:128,130,0,0 0/0:.:127:127:0:0%:67,60,0,0 -Example1_ref 8298 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:128,131,0,0 0/0:.:128:128:0:0%:66,62,0,0 -Example1_ref 8299 . A T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=6.6497E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:125,136,0,1 0/0:.:132:132:0:0%:66,66,0,0 -Example1_ref 8300 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:123,137,0,0 0/0:.:133:133:0:0%:67,66,0,0 -Example1_ref 8301 . C . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:125,136,0,0 0/0:.:133:133:0:0%:68,65,0,0 -Example1_ref 8302 . G . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:123,135,0,0 0/0:.:131:131:0:0%:64,67,0,0 -Example1_ref 8303 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:124,134,0,0 0/0:.:132:132:0:0%:66,66,0,0 -Example1_ref 8304 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:114,135,0,0 0/0:.:129:129:0:0%:64,65,0,0 -Example1_ref 8305 . C . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:121,132,0,0 0/0:.:130:130:0:0%:65,65,0,0 -Example1_ref 8306 . T . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:130:130:0:0%:65,65,0,0 -Example1_ref 8307 . G A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=3.3508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:118,136,0,0 0/0:.:128:127:1:0.78%:62,65,0,1 -Example1_ref 8308 . G A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=6.6165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:1:0.38%:120,143,0,1 0/0:.:135:135:0:0%:63,72,0,0 -Example1_ref 8309 . C . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:123,144,0,0 0/0:.:136:135:0:0%:65,70,0,0 -Example1_ref 8310 . T C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=5.6826E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:121,141,0,1 0/0:.:137:136:1:0.73%:65,71,1,0 -Example1_ref 8311 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:124,146,0,0 0/0:.:137:137:0:0%:64,73,0,0 -Example1_ref 8312 . T A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=6.6582E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:120,142,1,0 0/0:.:132:132:0:0%:64,68,0,0 -Example1_ref 8313 . C . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:120,140,0,0 0/0:.:133:133:0:0%:65,68,0,0 -Example1_ref 8314 . C T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=3.3417E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:122,143,0,0 0/0:.:133:132:1:0.75%:62,70,0,1 -Example1_ref 8315 . G A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=3.3586E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:120,143,0,0 0/0:.:134:132:1:0.75%:60,72,0,1 -Example1_ref 8316 . A G . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=3.3582E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:120,147,0,0 0/0:.:135:134:1:0.74%:61,73,1,0 -Example1_ref 8317 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:118,146,0,0 0/0:.:134:134:0:0%:62,72,0,0 -Example1_ref 8318 . A G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=6.6584E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:122,146,1,0 0/0:.:135:135:0:0%:62,73,0,0 -Example1_ref 8319 . C A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=6.6584E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:123,143,0,1 0/0:.:134:134:0:0%:61,73,0,0 -Example1_ref 8320 . A G . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=6.6585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:1:0.37%:122,148,1,0 0/0:.:136:136:0:0%:63,73,0,0 -Example1_ref 8321 . A T . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=3.3086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:123,148,0,0 0/0:.:134:133:1:0.75%:60,73,1,0 -Example1_ref 8322 . A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:120,147,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 8323 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:119,150,0,0 0/0:.:139:139:0:0%:63,76,0,0 -Example1_ref 8324 . C T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=3.414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:121,151,0,0 0/0:.:141:140:1:0.71%:63,77,1,0 -Example1_ref 8325 . A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:124,150,0,0 0/0:.:137:137:0:0%:61,76,0,0 -Example1_ref 8326 . C A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=6.6176E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:123,146,0,1 0/0:.:138:138:0:0%:64,74,0,0 -Example1_ref 8327 . T A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=3.3252E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:123,150,0,0 0/0:.:136:135:1:0.74%:61,74,1,0 -Example1_ref 8328 . C A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=3.3171E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:124,150,0,0 0/0:.:136:135:1:0.74%:62,73,0,1 -Example1_ref 8329 . T A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=3.4586E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:113,148,0,0 0/0:.:138:137:1:0.72%:60,77,0,1 -Example1_ref 8330 . C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:120,150,0,0 0/0:.:142:142:0:0%:63,79,0,0 -Example1_ref 8331 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:121,149,0,0 0/0:.:144:144:0:0%:63,81,0,0 -Example1_ref 8332 . G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:117,150,0,0 0/0:.:141:141:0:0%:63,78,0,0 -Example1_ref 8333 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:118,150,0,0 0/0:.:140:140:0:0%:61,79,0,0 -Example1_ref 8334 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:118,148,0,0 0/0:.:140:140:0:0%:60,80,0,0 -Example1_ref 8335 . G A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=6.5152E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:257:1:0.39%:119,138,0,1 0/0:.:138:138:0:0%:60,78,0,0 -Example1_ref 8336 . G A . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=4.2784E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:250:2:0.79%:108,142,1,1 0/0:.:133:133:0:0%:57,76,0,0 -Example1_ref 8337 . G . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:264:0:0%:118,146,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 8338 . T . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:126,146,0,0 0/0:.:143:143:0:0%:64,79,0,0 -Example1_ref 8339 . ATAC A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=6.5942E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:272:1:0.37%:125,147,0,1 0/0:.:141:141:0:0%:63,78,0,0 -Example1_ref 8340 . T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:270:0:0%:124,146,0,0 0/0:.:142:142:0:0%:64,78,0,0 -Example1_ref 8341 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:0:0%:121,145,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 8342 . C . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:0:0%:120,143,0,0 0/0:.:138:138:0:0%:62,76,0,0 -Example1_ref 8343 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:119,139,0,0 0/0:.:140:140:0:0%:63,77,0,0 -Example1_ref 8344 . A T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=6.5347E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:1:0.38%:120,143,0,1 0/0:.:140:140:0:0%:64,76,0,0 -Example1_ref 8345 . C . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:0:0%:118,143,0,0 0/0:.:141:141:0:0%:63,78,0,0 -Example1_ref 8346 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:116,137,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 8347 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:114,137,0,0 0/0:.:133:133:0:0%:57,76,0,0 -Example1_ref 8348 . C . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:115,134,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 8349 . A C . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=6.5285E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:116,135,1,0 0/0:.:134:134:0:0%:60,74,0,0 -Example1_ref 8350 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:114,134,0,0 0/0:.:134:134:0:0%:59,75,0,0 -Example1_ref 8351 . G . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:108,125,0,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 8352 . C T . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=4.0939E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:233:2:0.85%:111,122,2,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 8353 . T . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:114,124,0,0 0/0:.:131:131:0:0%:56,75,0,0 -Example1_ref 8354 . G A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=6.3944E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:105,121,0,1 0/0:.:128:128:0:0%:55,73,0,0 -Example1_ref 8355 . C A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=6.4932E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:111,125,0,1 0/0:.:128:128:0:0%:55,73,0,0 -Example1_ref 8356 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:110,125,0,0 0/0:.:132:132:0:0%:57,75,0,0 -Example1_ref 8357 . T G . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=6.3788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:1:0.44%:106,122,1,0 0/0:.:130:130:0:0%:57,73,0,0 -Example1_ref 8358 . TAC T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=6.3305E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:104,121,1,0 0/0:.:131:131:0:0%:59,72,0,0 -Example1_ref 8359 . A ACCTGT . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=3.6011E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:0:0%:107,124,0,0 0/0:.:130:129:1:0.77%:57,72,1,0 -Example1_ref 8360 . C A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=6.4286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:104,120,1,0 0/0:.:126:125:0:0%:55,70,0,0 -Example1_ref 8361 . A ACCTGT . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=5.7871E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:227:1:0.44%:105,122,1,0 0/0:.:123:122:1:0.81%:53,69,1,0 -Example1_ref 8362 . C . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:0:0%:105,116,0,0 0/0:.:119:119:0:0%:52,67,0,0 -Example1_ref 8363 . A ACCTGT . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=3.4234E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:0:0%:104,115,0,0 0/0:.:114:113:1:0.88%:49,64,1,0 -Example1_ref 8364 . C CTCTGTCTCT . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=3.4286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:113,117,0,0 0/0:.:120:119:1:0.83%:56,63,1,0 -Example1_ref 8365 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:110,113,0,0 0/0:.:119:119:0:0%:54,65,0,0 -Example1_ref 8366 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:111,114,0,0 0/0:.:120:119:0:0%:56,63,0,0 -Example1_ref 8367 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:105,115,0,0 0/0:.:116:116:0:0%:53,63,0,0 -Example1_ref 8368 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:0:0%:99,111,0,0 0/0:.:112:112:0:0%:50,62,0,0 -Example1_ref 8369 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:98,115,0,0 0/0:.:111:111:0:0%:49,62,0,0 -Example1_ref 8370 . C . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:90,115,0,0 0/0:.:112:112:0:0%:49,63,0,0 -Example1_ref 8371 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:91,101,0,0 0/0:.:108:108:0:0%:49,59,0,0 -Example1_ref 8372 . A ACTGTC . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=6.4765E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:87,105,1,0 0/0:.:105:105:0:0%:47,58,0,0 -Example1_ref 8373 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:86,89,0,0 0/0:.:98:98:0:0%:46,52,0,0 -Example1_ref 8374 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:0:0%:79,87,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 8375 . G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:76,84,0,0 0/0:.:95:95:0:0%:44,51,0,0 -Example1_ref 8376 . A G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=6.3985E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:81,85,0,1 0/0:.:94:94:0:0%:44,50,0,0 -Example1_ref 8377 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:78,88,0,0 0/0:.:96:96:0:0%:44,52,0,0 -Example1_ref 8378 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:82,85,0,0 0/0:.:96:96:0:0%:45,51,0,0 -Example1_ref 8379 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:78,84,0,0 0/0:.:91:91:0:0%:44,47,0,0 -Example1_ref 8380 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:79,84,0,0 0/0:.:95:95:0:0%:45,50,0,0 -Example1_ref 8381 . G . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:80,85,0,0 0/0:.:94:94:0:0%:44,50,0,0 -Example1_ref 8382 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:80,85,0,0 0/0:.:92:92:0:0%:44,48,0,0 -Example1_ref 8383 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:78,82,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 8384 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:80,82,0,0 0/0:.:90:90:0:0%:43,47,0,0 -Example1_ref 8385 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:79,85,0,0 0/0:.:93:93:0:0%:44,49,0,0 -Example1_ref 8386 . C . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:74,82,0,0 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 8387 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:77,83,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 8388 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:79,83,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 8389 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:78,84,0,0 0/0:.:93:93:0:0%:46,47,0,0 -Example1_ref 8390 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:77,82,0,0 0/0:.:94:94:0:0%:46,48,0,0 -Example1_ref 8391 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:74,80,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 8392 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:73,78,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 8393 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:78,79,0,0 0/0:.:95:95:0:0%:49,46,0,0 -Example1_ref 8394 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:74,79,0,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 8395 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:76,77,0,0 0/0:.:91:91:0:0%:44,47,0,0 -Example1_ref 8396 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:76,77,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 8397 . A T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=6.2449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:75,77,1,0 0/0:.:92:92:0:0%:48,44,0,0 -Example1_ref 8398 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:76,78,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 8399 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:77,75,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 8400 . A ACTGTCTCTT . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=3.7344E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:75,76,0,0 0/0:.:90:89:1:1.11%:45,44,1,0 -Example1_ref 8401 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:76,74,0,0 0/0:.:87:87:0:0%:45,42,0,0 -Example1_ref 8402 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:73,75,0,0 0/0:.:85:85:0:0%:43,42,0,0 -Example1_ref 8403 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:0:0%:72,71,0,0 0/0:.:82:82:0:0%:43,39,0,0 -Example1_ref 8404 . C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:67,71,0,0 0/0:.:87:86:0:0%:44,42,0,0 -Example1_ref 8405 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:73,72,0,0 0/0:.:84:84:0:0%:44,40,0,0 -Example1_ref 8406 . TAA T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=6.3393E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:69,72,1,0 0/0:.:82:82:0:0%:44,38,0,0 -Example1_ref 8407 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:69,73,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 8408 . A T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=6.3393E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:67,74,1,0 0/0:.:82:82:0:0%:42,40,0,0 -Example1_ref 8409 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:68,71,0,0 0/0:.:84:84:0:0%:43,41,0,0 -Example1_ref 8410 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:67,72,0,0 0/0:.:79:79:0:0%:39,40,0,0 -Example1_ref 8411 . G A . PASS DP=217;SOMATIC;SS=2;SSC=186;GPV=1E0;SPV=2.0148E-19 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:64,72,0,0 0/1:.:81:44:37:45.68%:23,21,18,19 -Example1_ref 8412 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:66,69,0,0 0/0:.:77:77:0:0%:38,39,0,0 -Example1_ref 8413 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:64,70,0,0 0/0:.:77:77:0:0%:39,38,0,0 -Example1_ref 8414 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:67,66,0,0 0/0:.:80:80:0:0%:40,40,0,0 -Example1_ref 8415 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:66,70,0,0 0/0:.:82:82:0:0%:42,40,0,0 -Example1_ref 8416 . A G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=6.2264E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:63,68,1,0 0/0:.:80:80:0:0%:40,40,0,0 -Example1_ref 8417 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:66,69,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 8418 . C . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:62,70,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 8419 . A AG . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=6.2326E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:62,71,0,1 0/0:.:84:83:1:1.19%:40,43,0,1 -Example1_ref 8420 . C T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.6646E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:58,68,1,0 0/0:.:81:77:4:4.94%:35,42,3,1 -Example1_ref 8421 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:58,68,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 8422 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:59,65,0,0 0/0:.:80:80:0:0%:37,43,0,0 -Example1_ref 8423 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:55,64,0,0 0/0:.:79:79:0:0%:37,42,0,0 -Example1_ref 8424 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:56,64,0,0 0/0:.:80:80:0:0%:37,43,0,0 -Example1_ref 8425 . C T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=6.0606E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:53,66,0,1 0/0:.:78:78:0:0%:34,44,0,0 -Example1_ref 8426 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:51,67,0,0 0/0:.:80:80:0:0%:36,44,0,0 -Example1_ref 8427 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:53,69,0,0 0/0:.:81:81:0:0%:36,45,0,0 -Example1_ref 8428 . C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:52,67,0,0 0/0:.:77:77:0:0%:34,43,0,0 -Example1_ref 8429 . C A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=5.9799E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:52,66,1,0 0/0:.:80:80:0:0%:36,44,0,0 -Example1_ref 8430 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:54,66,0,0 0/0:.:77:77:0:0%:35,42,0,0 -Example1_ref 8431 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:52,66,0,0 0/0:.:80:80:0:0%:37,43,0,0 -Example1_ref 8432 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:51,67,0,0 0/0:.:80:80:0:0%:37,43,0,0 -Example1_ref 8433 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:49,65,0,0 0/0:.:76:76:0:0%:33,43,0,0 -Example1_ref 8434 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:53,66,0,0 0/0:.:77:77:0:0%:35,42,0,0 -Example1_ref 8435 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:74:74:0:0%:33,41,0,0 -Example1_ref 8436 . G T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=3.9779E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:49,60,0,0 0/0:.:72:71:1:1.39%:30,41,1,0 -Example1_ref 8437 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:74:74:0:0%:33,41,0,0 -Example1_ref 8438 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:50,61,0,0 0/0:.:72:72:0:0%:34,38,0,0 -Example1_ref 8439 . C . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:70:70:0:0%:33,37,0,0 -Example1_ref 8440 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:51,62,0,0 0/0:.:75:75:0:0%:34,41,0,0 -Example1_ref 8441 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 8442 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:75:75:0:0%:34,41,0,0 -Example1_ref 8443 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:77:76:0:0%:33,43,0,0 -Example1_ref 8444 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 8445 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:76:76:0:0%:34,42,0,0 -Example1_ref 8446 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:75:75:0:0%:33,42,0,0 -Example1_ref 8447 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:48,58,0,0 0/0:.:72:72:0:0%:29,43,0,0 -Example1_ref 8448 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=6.1932E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:50,58,1,0 0/0:.:67:67:0:0%:26,41,0,0 -Example1_ref 8449 . A ACTGTC . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=4.0761E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:75:74:1:1.33%:30,44,1,0 -Example1_ref 8450 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:71:71:0:0%:29,42,0,0 -Example1_ref 8451 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:73:73:0:0%:30,43,0,0 -Example1_ref 8452 . C . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:52,58,0,0 0/0:.:74:74:0:0%:31,43,0,0 -Example1_ref 8453 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:76:76:0:0%:32,44,0,0 -Example1_ref 8454 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:77:77:0:0%:32,45,0,0 -Example1_ref 8455 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:51,62,0,0 0/0:.:76:76:0:0%:32,44,0,0 -Example1_ref 8456 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:49,62,0,0 0/0:.:77:77:0:0%:32,45,0,0 -Example1_ref 8457 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:47,59,0,0 0/0:.:77:77:0:0%:32,45,0,0 -Example1_ref 8458 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:47,60,0,0 0/0:.:75:75:0:0%:32,43,0,0 -Example1_ref 8459 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=5.9091E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:44,59,1,0 0/0:.:72:72:0:0%:28,44,0,0 -Example1_ref 8460 . C A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=6.5187E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:48,58,0,1 0/0:.:74:73:1:1.35%:30,43,1,0 -Example1_ref 8461 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:49,57,0,0 0/0:.:74:74:0:0%:32,42,0,0 -Example1_ref 8462 . G T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=4.1667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:46,59,0,0 0/0:.:75:74:1:1.33%:30,44,1,0 -Example1_ref 8463 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:44,58,0,0 0/0:.:74:74:0:0%:30,44,0,0 -Example1_ref 8464 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:77:77:0:0%:31,46,0,0 -Example1_ref 8465 . G T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=5.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:44,59,1,0 0/0:.:76:76:0:0%:31,45,0,0 -Example1_ref 8466 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:75:75:0:0%:31,44,0,0 -Example1_ref 8467 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:48,58,0,0 0/0:.:76:76:0:0%:30,46,0,0 -Example1_ref 8468 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:77:77:0:0%:31,46,0,0 -Example1_ref 8469 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:47,59,0,0 0/0:.:76:76:0:0%:31,45,0,0 -Example1_ref 8470 . T C . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=5.8919E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:49,59,1,0 0/0:.:76:76:0:0%:31,45,0,0 -Example1_ref 8471 . C . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:49,59,0,0 0/0:.:75:75:0:0%:30,45,0,0 -Example1_ref 8472 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:48,59,0,0 0/0:.:77:77:0:0%:31,46,0,0 -Example1_ref 8473 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:78:78:0:0%:32,46,0,0 -Example1_ref 8474 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:78:78:0:0%:32,46,0,0 -Example1_ref 8475 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:79:79:0:0%:33,46,0,0 -Example1_ref 8476 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:79:79:0:0%:33,46,0,0 -Example1_ref 8477 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:49,54,0,0 0/0:.:78:78:0:0%:33,45,0,0 -Example1_ref 8478 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:47,54,0,0 0/0:.:80:80:0:0%:34,46,0,0 -Example1_ref 8479 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:49,53,0,0 0/0:.:82:82:0:0%:36,46,0,0 -Example1_ref 8480 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:52,52,0,0 0/0:.:83:83:0:0%:37,46,0,0 -Example1_ref 8481 . C . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:49,55,0,0 0/0:.:81:81:0:0%:36,45,0,0 -Example1_ref 8482 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:82:82:0:0%:38,44,0,0 -Example1_ref 8483 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:82:82:0:0%:38,44,0,0 -Example1_ref 8484 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 8485 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:80:80:0:0%:36,44,0,0 -Example1_ref 8486 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:54,55,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 8487 . A AC . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=5.7513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:53,57,1,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 8488 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:53,55,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 8489 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:58,48,0,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 8490 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:60,49,0,0 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 8491 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:57,48,0,0 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 8492 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:59,48,0,0 0/0:.:84:84:0:0%:48,36,0,0 -Example1_ref 8493 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:58,45,0,0 0/0:.:85:85:0:0%:48,37,0,0 -Example1_ref 8494 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:58,46,0,0 0/0:.:87:87:0:0%:50,37,0,0 -Example1_ref 8495 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:57,47,0,0 0/0:.:85:85:0:0%:48,37,0,0 -Example1_ref 8496 . CTT C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=4.555E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:60,44,0,0 0/0:.:87:86:1:1.15%:50,36,0,1 -Example1_ref 8497 . T TCTG . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=7.0579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:60,45,0,1 0/0:.:90:88:1:1.12%:50,38,1,0 -Example1_ref 8498 . T G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=5.4237E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:1:1.04%:60,35,0,1 0/0:.:82:81:0:0%:48,33,0,0 -Example1_ref 8499 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:63,36,0,0 0/0:.:85:85:0:0%:51,34,0,0 -Example1_ref 8500 . T G . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=4.5355E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:63,37,0,0 0/0:.:83:82:1:1.2%:49,33,0,1 -Example1_ref 8501 . C . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:64,36,0,0 0/0:.:88:88:0:0%:56,32,0,0 -Example1_ref 8502 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:65,39,0,0 0/0:.:90:90:0:0%:56,34,0,0 -Example1_ref 8503 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:66,40,0,0 0/0:.:93:93:0:0%:57,36,0,0 -Example1_ref 8504 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:68,39,0,0 0/0:.:95:95:0:0%:58,37,0,0 -Example1_ref 8505 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:67,37,0,0 0/0:.:94:94:0:0%:58,36,0,0 -Example1_ref 8506 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:68,38,0,0 0/0:.:93:93:0:0%:58,35,0,0 -Example1_ref 8507 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:69,38,0,0 0/0:.:94:94:0:0%:59,35,0,0 -Example1_ref 8508 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:67,39,0,0 0/0:.:92:92:0:0%:56,36,0,0 -Example1_ref 8509 . C A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=5.2736E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:105:1:0.94%:67,38,0,1 0/0:.:95:95:0:0%:59,36,0,0 -Example1_ref 8510 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:68,37,0,0 0/0:.:94:94:0:0%:58,36,0,0 -Example1_ref 8511 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:71,37,0,0 0/0:.:97:97:0:0%:59,38,0,0 -Example1_ref 8512 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:68,37,0,0 0/0:.:99:99:0:0%:62,37,0,0 -Example1_ref 8513 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:71,33,0,0 0/0:.:99:99:0:0%:61,38,0,0 -Example1_ref 8514 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:101:101:0:0%:64,37,0,0 -Example1_ref 8515 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:73,35,0,0 0/0:.:101:101:0:0%:64,37,0,0 -Example1_ref 8516 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:101:101:0:0%:63,38,0,0 -Example1_ref 8517 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:100:100:0:0%:65,35,0,0 -Example1_ref 8518 . G GAACTGTCTCTA . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=4.802E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:70,35,0,0 0/0:.:97:96:1:1.03%:62,34,1,0 -Example1_ref 8519 . A ATC . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=5.1923E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:69,38,1,0 0/0:.:100:100:0:0%:62,38,0,0 -Example1_ref 8520 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:71,38,0,0 0/0:.:99:99:0:0%:63,36,0,0 -Example1_ref 8521 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:71,36,0,0 0/0:.:100:100:0:0%:64,36,0,0 -Example1_ref 8522 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:73,36,0,0 0/0:.:98:98:0:0%:63,35,0,0 -Example1_ref 8523 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:75,33,0,0 0/0:.:100:100:0:0%:64,36,0,0 -Example1_ref 8524 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:74,36,0,0 0/0:.:102:102:0:0%:65,37,0,0 -Example1_ref 8525 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:76,35,0,0 0/0:.:104:104:0:0%:66,38,0,0 -Example1_ref 8526 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:73,35,0,0 0/0:.:102:102:0:0%:63,39,0,0 -Example1_ref 8527 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:72,34,0,0 0/0:.:103:103:0:0%:64,39,0,0 -Example1_ref 8528 . C T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=5.0481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:104:1:0.95%:72,32,0,1 0/0:.:103:103:0:0%:65,38,0,0 -Example1_ref 8529 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:72,35,0,0 0/0:.:103:103:0:0%:61,42,0,0 -Example1_ref 8530 . G . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:75,36,0,0 0/0:.:102:102:0:0%:61,41,0,0 -Example1_ref 8531 . C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:76,33,0,0 0/0:.:100:100:0:0%:63,37,0,0 -Example1_ref 8532 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:77,35,0,0 0/0:.:105:105:0:0%:63,42,0,0 -Example1_ref 8533 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:77,34,0,0 0/0:.:105:105:0:0%:62,43,0,0 -Example1_ref 8534 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:77,34,0,0 0/0:.:106:106:0:0%:63,43,0,0 -Example1_ref 8535 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:76,33,0,0 0/0:.:107:107:0:0%:63,44,0,0 -Example1_ref 8536 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:106:106:0:0%:62,44,0,0 -Example1_ref 8537 . G GCTGTCTCTTATAC . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=5.1389E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:75,35,1,0 0/0:.:105:105:0:0%:61,44,0,0 -Example1_ref 8538 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:73,37,0,0 0/0:.:102:102:0:0%:58,44,0,0 -Example1_ref 8539 . C . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:77,36,0,0 0/0:.:101:101:0:0%:60,41,0,0 -Example1_ref 8540 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:107:107:0:0%:62,45,0,0 -Example1_ref 8541 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:77,34,0,0 0/0:.:105:105:0:0%:61,44,0,0 -Example1_ref 8542 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:104:104:0:0%:62,42,0,0 -Example1_ref 8543 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:78,36,0,0 0/0:.:103:103:0:0%:58,45,0,0 -Example1_ref 8544 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:77,35,0,0 0/0:.:102:102:0:0%:58,44,0,0 -Example1_ref 8545 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:76,36,0,0 0/0:.:104:104:0:0%:61,43,0,0 -Example1_ref 8546 . C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:80,35,0,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 8547 . A G . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=4.6047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:80,36,0,0 0/0:.:99:98:1:1.01%:56,42,0,1 -Example1_ref 8548 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:78,35,0,0 0/0:.:100:100:0:0%:58,42,0,0 -Example1_ref 8549 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:78,35,0,0 0/0:.:99:99:0:0%:55,44,0,0 -Example1_ref 8550 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:78,37,0,0 0/0:.:100:100:0:0%:56,44,0,0 -Example1_ref 8551 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:79,37,0,0 0/0:.:99:99:0:0%:55,44,0,0 -Example1_ref 8552 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:78,39,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 8553 . G A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=5.1675E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:72,35,0,1 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 8554 . G T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=5.4187E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:69,40,1,0 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 8555 . A AC . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=5.2427E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:69,38,0,1 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 8556 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:71,40,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 8557 . T G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=5.2657E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:69,39,0,1 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 8558 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:75,39,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 8559 . T G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=4.5291E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:82,40,0,0 0/0:.:101:100:1:0.99%:56,44,0,1 -Example1_ref 8560 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:79,43,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 8561 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:77,43,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 8562 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 8563 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:103:103:0:0%:54,49,0,0 -Example1_ref 8564 . A G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=4.5701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:76,44,0,0 0/0:.:101:100:1:0.99%:52,48,0,1 -Example1_ref 8565 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:80,45,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 8566 . C A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=4.5217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:81,45,0,0 0/0:.:104:103:1:0.96%:53,50,1,0 -Example1_ref 8567 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:82,41,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 8568 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:83,42,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 8569 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:103:103:0:0%:54,49,0,0 -Example1_ref 8570 . G . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:83,43,0,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 8571 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:97:97:0:0%:49,48,0,0 -Example1_ref 8572 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 8573 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:84,43,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 8574 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:103:103:0:0%:54,49,0,0 -Example1_ref 8575 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:87,40,0,0 0/0:.:102:102:0:0%:53,49,0,0 -Example1_ref 8576 . A G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=4.6154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:84,42,0,0 0/0:.:108:107:1:0.93%:56,51,0,1 -Example1_ref 8577 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:87,41,0,0 0/0:.:107:107:0:0%:56,51,0,0 -Example1_ref 8578 . G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:83,44,0,0 0/0:.:106:106:0:0%:55,51,0,0 -Example1_ref 8579 . C T . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=4.4681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:105:104:1:0.95%:52,52,1,0 -Example1_ref 8580 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:84,44,0,0 0/0:.:106:106:0:0%:54,52,0,0 -Example1_ref 8581 . T C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=5.6356E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:88,44,1,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 8582 . G . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:84,44,0,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 8583 . C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:87,42,0,0 0/0:.:102:102:0:0%:51,51,0,0 -Example1_ref 8584 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:89,44,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 8585 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:88,42,0,0 0/0:.:104:104:0:0%:51,53,0,0 -Example1_ref 8586 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:103:103:0:0%:52,51,0,0 -Example1_ref 8587 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:88,46,0,0 0/0:.:103:103:0:0%:50,53,0,0 -Example1_ref 8588 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:92,46,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 8589 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:91,45,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 8590 . C . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:91,45,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 8591 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:90,46,0,0 0/0:.:106:106:0:0%:54,52,0,0 -Example1_ref 8592 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:91,45,0,0 0/0:.:104:104:0:0%:54,50,0,0 -Example1_ref 8593 . G . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:89,42,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 8594 . G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:85,44,0,0 0/0:.:104:104:0:0%:52,52,0,0 -Example1_ref 8595 . A T . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=5.654E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:88,45,1,0 0/0:.:103:103:0:0%:52,51,0,0 -Example1_ref 8596 . C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:88,46,0,0 0/0:.:105:105:0:0%:54,51,0,0 -Example1_ref 8597 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:90,47,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 8598 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:87,46,0,0 0/0:.:105:105:0:0%:54,51,0,0 -Example1_ref 8599 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:88,46,0,0 0/0:.:104:104:0:0%:53,51,0,0 -Example1_ref 8600 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:87,46,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 8601 . A ACAG . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=5.6356E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:87,45,0,1 0/0:.:103:103:0:0%:54,49,0,0 -Example1_ref 8602 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:90,48,0,0 0/0:.:105:105:0:0%:55,50,0,0 -Example1_ref 8603 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:88,47,0,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 8604 . C CTGTCTCTTA . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=4.3443E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:92,46,0,0 0/0:.:106:105:1:0.94%:54,51,1,0 -Example1_ref 8605 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:90,47,0,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 8606 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:93,45,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 8607 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:93,46,0,0 0/0:.:105:105:0:0%:55,50,0,0 -Example1_ref 8608 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:91,46,0,0 0/0:.:103:103:0:0%:54,49,0,0 -Example1_ref 8609 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:93,47,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 8610 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:91,49,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 8611 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:93,49,0,0 0/0:.:104:104:0:0%:55,49,0,0 -Example1_ref 8612 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:90,47,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 8613 . G . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:86,51,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 8614 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:91,49,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 8615 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:105:105:0:0%:55,50,0,0 -Example1_ref 8616 . C . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:92,52,0,0 0/0:.:105:105:0:0%:55,50,0,0 -Example1_ref 8617 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 8618 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:98,52,0,0 0/0:.:102:102:0:0%:53,49,0,0 -Example1_ref 8619 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:100,53,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 8620 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:103,54,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 8621 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:102,56,0,0 0/0:.:109:109:0:0%:59,50,0,0 -Example1_ref 8622 . C . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:103,56,0,0 0/0:.:106:106:0:0%:58,48,0,0 -Example1_ref 8623 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:103,57,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 8624 . G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:99,57,0,0 0/0:.:107:107:0:0%:56,51,0,0 -Example1_ref 8625 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:100,57,0,0 0/0:.:111:111:0:0%:60,51,0,0 -Example1_ref 8626 . C CCTGTCTCTT . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=4.1418E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:102,55,0,0 0/0:.:111:110:1:0.9%:59,51,1,0 -Example1_ref 8627 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:101,58,0,0 0/0:.:111:111:0:0%:61,50,0,0 -Example1_ref 8628 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:101,59,0,0 0/0:.:108:108:0:0%:58,50,0,0 -Example1_ref 8629 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:107,58,0,0 0/0:.:111:111:0:0%:62,49,0,0 -Example1_ref 8630 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:106,58,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 8631 . T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:109,57,0,0 0/0:.:109:109:0:0%:61,48,0,0 -Example1_ref 8632 . C . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:107,56,0,0 0/0:.:110:110:0:0%:62,48,0,0 -Example1_ref 8633 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:109,59,0,0 0/0:.:108:108:0:0%:62,46,0,0 -Example1_ref 8634 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:111,59,0,0 0/0:.:111:111:0:0%:65,46,0,0 -Example1_ref 8635 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:110,56,0,0 0/0:.:108:108:0:0%:65,43,0,0 -Example1_ref 8636 . C . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:111,53,0,0 0/0:.:109:109:0:0%:62,47,0,0 -Example1_ref 8637 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:114,56,0,0 0/0:.:110:110:0:0%:64,46,0,0 -Example1_ref 8638 . T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:110,55,0,0 0/0:.:110:110:0:0%:64,46,0,0 -Example1_ref 8639 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:109,55,0,0 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 8640 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:108,56,0,0 0/0:.:110:110:0:0%:64,46,0,0 -Example1_ref 8641 . G . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:102,60,0,0 0/0:.:111:111:0:0%:65,46,0,0 -Example1_ref 8642 . T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:0:0%:109,61,0,0 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 8643 . G C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=4.0511E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:105,58,0,0 0/0:.:111:110:1:0.9%:64,46,0,1 -Example1_ref 8644 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:110,61,0,0 0/0:.:113:113:0:0%:66,47,0,0 -Example1_ref 8645 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:109,60,0,0 0/0:.:111:111:0:0%:66,45,0,0 -Example1_ref 8646 . A C . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=3.9223E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:109,63,0,0 0/0:.:111:110:1:0.9%:62,48,1,0 -Example1_ref 8647 . C A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=6.1255E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:110,55,0,1 0/0:.:105:105:0:0%:66,39,0,0 -Example1_ref 8648 . C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:109,61,0,0 0/0:.:109:109:0:0%:62,47,0,0 -Example1_ref 8649 . T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:112,63,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 8650 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:111,64,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 8651 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:110,63,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 8652 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:110,63,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 8653 . C . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:115,63,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 8654 . T A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=3.9583E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:112,62,0,0 0/0:.:114:113:1:0.88%:66,47,0,1 -Example1_ref 8655 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:112,62,0,0 0/0:.:115:115:0:0%:67,48,0,0 -Example1_ref 8656 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:112,56,0,0 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 8657 . C A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=6.0417E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:173:1:0.57%:111,62,0,1 0/0:.:114:114:0:0%:67,47,0,0 -Example1_ref 8658 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:111,63,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 8659 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 8660 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:115:115:0:0%:64,51,0,0 -Example1_ref 8661 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:111,62,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 8662 . C . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:113,65,0,0 0/0:.:113:113:0:0%:63,50,0,0 -Example1_ref 8663 . G . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:116:116:0:0%:65,51,0,0 -Example1_ref 8664 . T C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=3.9446E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:110,65,0,0 0/0:.:114:113:1:0.88%:63,50,1,0 -Example1_ref 8665 . T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:108,64,0,0 0/0:.:111:111:0:0%:63,48,0,0 -Example1_ref 8666 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:108,66,0,0 0/0:.:110:110:0:0%:60,50,0,0 -Example1_ref 8667 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:108,66,0,0 0/0:.:112:112:0:0%:62,50,0,0 -Example1_ref 8668 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:0:0%:110,67,0,0 0/0:.:116:116:0:0%:65,51,0,0 -Example1_ref 8669 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:106,66,0,0 0/0:.:108:108:0:0%:59,49,0,0 -Example1_ref 8670 . G T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=3.7023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:171:2:1.16%:102,69,2,0 0/0:.:111:111:0:0%:60,51,0,0 -Example1_ref 8671 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:105,68,0,0 0/0:.:112:112:0:0%:61,51,0,0 -Example1_ref 8672 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:108,67,0,0 0/0:.:110:110:0:0%:57,53,0,0 -Example1_ref 8673 . A T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=3.9437E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:105,67,0,0 0/0:.:112:111:1:0.89%:59,52,0,1 -Example1_ref 8674 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:107:107:0:0%:55,52,0,0 -Example1_ref 8675 . A ATCTGTCT . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=6.1947E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:107,68,1,0 0/0:.:109:108:1:0.92%:55,53,1,0 -Example1_ref 8676 . T G . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=3.8351E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:104,68,0,0 0/0:.:107:106:1:0.93%:54,52,0,1 -Example1_ref 8677 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:103,67,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 8678 . G GA . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=3.6502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:100,67,0,0 0/0:.:96:95:1:1.04%:47,48,0,1 -Example1_ref 8679 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:97:97:0:0%:48,49,0,0 -Example1_ref 8680 . A AG . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=3.6923E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:97,67,0,0 0/0:.:96:95:1:1.04%:47,48,0,1 -Example1_ref 8681 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:100,66,0,0 0/0:.:98:98:0:0%:49,49,0,0 -Example1_ref 8682 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:101,69,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 8683 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 8684 . T A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=3.6462E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:107,69,0,0 0/0:.:101:100:1:0.99%:51,49,0,1 -Example1_ref 8685 . T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:105,67,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 8686 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:106,69,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 8687 . C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:106,70,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 8688 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:105,70,0,0 0/0:.:101:101:0:0%:51,50,0,0 -Example1_ref 8689 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:102,70,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 8690 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:96,69,0,0 0/0:.:98:98:0:0%:48,50,0,0 -Example1_ref 8691 . C . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:103,68,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 8692 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:97:97:0:0%:47,50,0,0 -Example1_ref 8693 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:111,65,0,0 0/0:.:97:97:0:0%:47,50,0,0 -Example1_ref 8694 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:109,63,0,0 0/0:.:96:96:0:0%:46,50,0,0 -Example1_ref 8695 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:111,65,0,0 0/0:.:94:94:0:0%:45,49,0,0 -Example1_ref 8696 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:106,66,0,0 0/0:.:95:95:0:0%:45,50,0,0 -Example1_ref 8697 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:109,65,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 8698 . GAGT G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=6.5019E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:1:0.58%:106,64,1,0 0/0:.:92:92:0:0%:44,48,0,0 -Example1_ref 8699 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:105,64,0,0 0/0:.:94:94:0:0%:44,50,0,0 -Example1_ref 8700 . G A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=5.6876E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:102,62,1,0 0/0:.:87:85:1:1.16%:40,45,0,1 -Example1_ref 8701 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:101,63,0,0 0/0:.:87:87:0:0%:42,45,0,0 -Example1_ref 8702 . C A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=3.3745E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:99,62,0,0 0/0:.:82:81:1:1.22%:39,42,1,0 -Example1_ref 8703 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 8704 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:104,65,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 8705 . C . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:101,61,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 8706 . C A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=3.4677E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:99,63,0,0 0/0:.:86:85:1:1.16%:43,42,0,1 -Example1_ref 8707 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:85:85:0:0%:43,42,0,0 -Example1_ref 8708 . C . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 8709 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:100,63,0,0 0/0:.:81:81:0:0%:41,40,0,0 -Example1_ref 8710 . A AC . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=6.5992E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:100,62,0,1 0/0:.:84:84:0:0%:44,40,0,0 -Example1_ref 8711 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:100,58,0,0 0/0:.:76:76:0:0%:41,35,0,0 -Example1_ref 8712 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:100,59,0,0 0/0:.:84:84:0:0%:43,41,0,0 -Example1_ref 8713 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:96,62,0,0 0/0:.:82:82:0:0%:43,39,0,0 -Example1_ref 8714 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:96,61,0,0 0/0:.:84:84:0:0%:43,41,0,0 -Example1_ref 8715 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:97,65,0,0 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 8716 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:95,62,0,0 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 8717 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:96,64,0,0 0/0:.:85:85:0:0%:43,42,0,0 -Example1_ref 8718 . A ACTGTCTCT . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=6.5182E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:97,63,1,0 0/0:.:86:86:0:0%:44,42,0,0 -Example1_ref 8719 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:0:0%:94,63,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 8720 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:84:84:0:0%:46,38,0,0 -Example1_ref 8721 . T A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=3.4711E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:95,63,0,0 0/0:.:84:83:1:1.19%:45,38,1,0 -Example1_ref 8722 . G . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:96,67,0,0 0/0:.:80:80:0:0%:44,36,0,0 -Example1_ref 8723 . G T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=3.3054E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:79:78:1:1.27%:44,34,1,0 -Example1_ref 8724 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:98,67,0,0 0/0:.:81:81:0:0%:46,35,0,0 -Example1_ref 8725 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:81:81:0:0%:46,35,0,0 -Example1_ref 8726 . G T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=6.7227E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:93,66,1,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 8727 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:79:79:0:0%:44,35,0,0 -Example1_ref 8728 . C . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:95,66,0,0 0/0:.:80:80:0:0%:46,34,0,0 -Example1_ref 8729 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:79:79:0:0%:44,35,0,0 -Example1_ref 8730 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:99,71,0,0 0/0:.:83:82:0:0%:47,35,0,0 -Example1_ref 8731 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:77:77:0:0%:48,29,0,0 -Example1_ref 8732 . T . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:99,69,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 8733 . C . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:98,65,0,0 0/0:.:82:82:0:0%:47,35,0,0 -Example1_ref 8734 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:99,72,0,0 0/0:.:85:85:0:0%:49,36,0,0 -Example1_ref 8735 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:101,73,0,0 0/0:.:86:86:0:0%:50,36,0,0 -Example1_ref 8736 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:99,72,0,0 0/0:.:87:87:0:0%:51,36,0,0 -Example1_ref 8737 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:97,73,0,0 0/0:.:85:85:0:0%:50,35,0,0 -Example1_ref 8738 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:84:84:0:0%:50,34,0,0 -Example1_ref 8739 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:96,73,0,0 0/0:.:85:85:0:0%:51,34,0,0 -Example1_ref 8740 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:100,72,0,0 0/0:.:86:86:0:0%:50,36,0,0 -Example1_ref 8741 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:95,72,0,0 0/0:.:82:82:0:0%:48,34,0,0 -Example1_ref 8742 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:98,73,0,0 0/0:.:83:83:0:0%:49,34,0,0 -Example1_ref 8743 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:95,72,0,0 0/0:.:81:81:0:0%:48,33,0,0 -Example1_ref 8744 . A G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=6.7451E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:100,71,0,1 0/0:.:83:83:0:0%:49,34,0,0 -Example1_ref 8745 . T TCA . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=6.72E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:98,69,1,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 8746 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:99,71,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 8747 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:101,75,0,0 0/0:.:85:85:0:0%:50,35,0,0 -Example1_ref 8748 . C CTCTGTCTCT . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=6.7331E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:94,74,1,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 8749 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:96,74,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 8750 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:80:80:0:0%:48,32,0,0 -Example1_ref 8751 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:93,73,0,0 0/0:.:78:78:0:0%:47,31,0,0 -Example1_ref 8752 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:83:83:0:0%:49,34,0,0 -Example1_ref 8753 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:84:84:0:0%:50,34,0,0 -Example1_ref 8754 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:95,71,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 8755 . G . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:84:84:0:0%:51,33,0,0 -Example1_ref 8756 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:93,72,0,0 0/0:.:83:83:0:0%:50,33,0,0 -Example1_ref 8757 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:94,72,0,0 0/0:.:80:80:0:0%:48,32,0,0 -Example1_ref 8758 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:83:83:0:0%:50,33,0,0 -Example1_ref 8759 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:94,73,0,0 0/0:.:83:83:0:0%:49,34,0,0 -Example1_ref 8760 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:84:84:0:0%:52,32,0,0 -Example1_ref 8761 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:85:85:0:0%:51,34,0,0 -Example1_ref 8762 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:95,73,0,0 0/0:.:86:86:0:0%:52,34,0,0 -Example1_ref 8763 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:91,74,0,0 0/0:.:86:86:0:0%:52,34,0,0 -Example1_ref 8764 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:95,74,0,0 0/0:.:86:86:0:0%:51,35,0,0 -Example1_ref 8765 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:85:85:0:0%:51,34,0,0 -Example1_ref 8766 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:96,73,0,0 0/0:.:82:82:0:0%:49,33,0,0 -Example1_ref 8767 . C T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=3.3984E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:93,76,0,0 0/0:.:87:86:1:1.15%:49,37,1,0 -Example1_ref 8768 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 8769 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:91,80,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 8770 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:93,80,0,0 0/0:.:89:89:0:0%:50,39,0,0 -Example1_ref 8771 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:93,78,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 8772 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:94,76,0,0 0/0:.:89:88:0:0%:48,40,0,0 -Example1_ref 8773 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:88,77,0,0 0/0:.:89:89:0:0%:50,39,0,0 -Example1_ref 8774 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:91,78,0,0 0/0:.:87:87:0:0%:51,36,0,0 -Example1_ref 8775 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:88:88:0:0%:50,38,0,0 -Example1_ref 8776 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:89:89:0:0%:50,39,0,0 -Example1_ref 8777 . G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:90,79,0,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 8778 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:90,81,0,0 0/0:.:86:86:0:0%:48,38,0,0 -Example1_ref 8779 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:92,82,0,0 0/0:.:84:84:0:0%:48,36,0,0 -Example1_ref 8780 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:91,81,0,0 0/0:.:87:87:0:0%:48,39,0,0 -Example1_ref 8781 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:94,79,0,0 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 8782 . A G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=5.6989E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:93,78,0,1 0/0:.:90:89:1:1.11%:50,39,0,1 -Example1_ref 8783 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:96,82,0,0 0/0:.:88:88:0:0%:48,40,0,0 -Example1_ref 8784 . G . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:89,83,0,0 0/0:.:87:87:0:0%:47,40,0,0 -Example1_ref 8785 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:90:90:0:0%:50,40,0,0 -Example1_ref 8786 . C . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:96,80,0,0 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 8787 . AACGAT A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=6.6031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:95,77,0,1 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 8788 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:95,77,0,0 0/0:.:91:91:0:0%:50,41,0,0 -Example1_ref 8789 . C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:94,78,0,0 0/0:.:89:89:0:0%:48,41,0,0 -Example1_ref 8790 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:93,79,0,0 0/0:.:84:84:0:0%:46,38,0,0 -Example1_ref 8791 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:94,76,0,0 0/0:.:85:85:0:0%:46,39,0,0 -Example1_ref 8792 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:91,74,0,0 0/0:.:77:77:0:0%:41,36,0,0 -Example1_ref 8793 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:95,75,0,0 0/0:.:82:82:0:0%:45,37,0,0 -Example1_ref 8794 . C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:93,81,0,0 0/0:.:87:87:0:0%:47,40,0,0 -Example1_ref 8795 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:97,80,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 8796 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:96,81,0,0 0/0:.:84:84:0:0%:45,39,0,0 -Example1_ref 8797 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:95,81,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 8798 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:88:88:0:0%:46,42,0,0 -Example1_ref 8799 . G GCTGTCTCTT . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:90,81,1,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 8800 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:0:0%:90,82,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 8801 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:90,82,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 8802 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:92,82,0,0 0/0:.:87:87:0:0%:46,41,0,0 -Example1_ref 8803 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:91,78,0,0 0/0:.:88:88:0:0%:46,42,0,0 -Example1_ref 8804 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:91,80,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 8805 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:89,82,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 8806 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:90,82,0,0 0/0:.:87:87:0:0%:45,42,0,0 -Example1_ref 8807 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:90,84,0,0 0/0:.:89:89:0:0%:45,44,0,0 -Example1_ref 8808 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:88,82,0,0 0/0:.:91:91:0:0%:46,45,0,0 -Example1_ref 8809 . AT A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=6.5251E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:84,84,1,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 8810 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:0:0%:84,78,0,0 0/0:.:86:86:0:0%:43,43,0,0 -Example1_ref 8811 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:84,78,0,0 0/0:.:87:87:0:0%:45,42,0,0 -Example1_ref 8812 . A AATCC . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=6.5462E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:85,77,1,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 8813 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 8814 . T A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=6.6939E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:85,78,0,1 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 8815 . A ACTGTCTC . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=6.6135E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:85,80,1,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 8816 . T TC . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=6.7083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:160:1:0.62%:83,77,1,0 0/0:.:79:79:0:0%:40,39,0,0 -Example1_ref 8817 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:0:0%:83,77,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 8818 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:81,80,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 8819 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:80,81,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 8820 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:81,79,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 8821 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:80,79,0,0 0/0:.:79:79:0:0%:38,41,0,0 -Example1_ref 8822 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:77,79,0,0 0/0:.:75:75:0:0%:36,39,0,0 -Example1_ref 8823 . A T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=3.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:79,77,0,0 0/0:.:78:77:1:1.28%:36,41,1,0 -Example1_ref 8824 . G T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=3.1441E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:79,78,0,0 0/0:.:72:71:1:1.39%:32,39,1,0 -Example1_ref 8825 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:76,79,0,0 0/0:.:77:77:0:0%:35,42,0,0 -Example1_ref 8826 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:79,78,0,0 0/0:.:76:76:0:0%:35,41,0,0 -Example1_ref 8827 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:76,78,0,0 0/0:.:75:75:0:0%:34,41,0,0 -Example1_ref 8828 . G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:77,79,0,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 8829 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:78,73,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8830 . G . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:74,76,0,0 0/0:.:70:70:0:0%:30,40,0,0 -Example1_ref 8831 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:79,73,0,0 0/0:.:73:73:0:0%:33,40,0,0 -Example1_ref 8832 . G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:76,73,0,0 0/0:.:74:74:0:0%:34,40,0,0 -Example1_ref 8833 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:79,68,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 8834 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:76,70,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 8835 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:80,71,0,0 0/0:.:75:75:0:0%:34,41,0,0 -Example1_ref 8836 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:82,68,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 8837 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:75,67,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8838 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:78,69,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 8839 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8840 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:79,69,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 8841 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:75,70,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 8842 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:79,70,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8843 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 8844 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:74:74:0:0%:34,40,0,0 -Example1_ref 8845 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:76,70,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8846 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:80,69,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 8847 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:78,73,0,0 0/0:.:76:76:0:0%:35,41,0,0 -Example1_ref 8848 . C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:79,73,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 8849 . A G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=6.6814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:1:0.66%:78,72,1,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 8850 . C . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:79,69,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 8851 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:75,73,0,0 0/0:.:74:74:0:0%:35,39,0,0 -Example1_ref 8852 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:81,71,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 8853 . T G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=6.8161E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:79,72,0,1 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 8854 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:79,70,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 8855 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:77,73,0,0 0/0:.:74:74:0:0%:35,39,0,0 -Example1_ref 8856 . T . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:80,74,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 8857 . C A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=4.577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:147:2:1.34%:75,72,0,2 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 8858 . A G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=6.8182E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:149:1:0.67%:77,72,0,1 0/0:.:70:70:0:0%:33,37,0,0 -Example1_ref 8859 . G GACTGTCTCTT . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=6.8571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:143:1:0.69%:72,71,1,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 8860 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:0:0%:76,72,0,0 0/0:.:70:70:0:0%:33,37,0,0 -Example1_ref 8861 . T G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=6.8807E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:78,71,0,1 0/0:.:68:68:0:0%:34,34,0,0 -Example1_ref 8862 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:80,72,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 8863 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:76,69,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 8864 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:76,69,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 8865 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:76,69,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 8866 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:77,71,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 8867 . G A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=3.2558E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:74,71,0,0 0/0:.:70:69:1:1.43%:34,35,0,1 -Example1_ref 8868 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:73,71,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 8869 . A T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=6.7619E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:71,70,1,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 8870 . A AC . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=6.729E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:74,69,1,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 8871 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:77,68,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 8872 . G A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=6.7308E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:72,67,0,1 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 8873 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:75,68,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 8874 . C CTCTTAT . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=6.9756E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:72,70,1,0 0/0:.:62:62:0:0%:31,31,0,0 -Example1_ref 8875 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:71,70,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 8876 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:71,70,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 8877 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:72,70,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 8878 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:70,69,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 8879 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:72,69,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 8880 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:71,69,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 8881 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:61,67,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 8882 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:62,71,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 8883 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:59,70,0,0 0/0:.:60:60:0:0%:29,31,0,0 -Example1_ref 8884 . G . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:60,68,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 8885 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 8886 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:60,70,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 8887 . C A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=6.875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,0,1 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 8888 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:60,72,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 8889 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:60,72,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 8890 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 8891 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:59,68,0,0 0/0:.:61:61:0:0%:30,31,0,0 -Example1_ref 8892 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:60,70,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 8893 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:63,71,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 8894 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:62,70,0,0 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 8895 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:63,72,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 8896 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:63,71,0,0 0/0:.:61:61:0:0%:28,33,0,0 -Example1_ref 8897 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 8898 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:62:62:0:0%:29,33,0,0 -Example1_ref 8899 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:64,75,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 8900 . C A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=6.9474E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,0,1 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 8901 . C . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:61,70,0,0 0/0:.:53:53:0:0%:21,32,0,0 -Example1_ref 8902 . C . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:57,70,0,0 0/0:.:56:56:0:0%:25,31,0,0 -Example1_ref 8903 . G T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=7.1351E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,1,0 0/0:.:53:53:0:0%:25,28,0,0 -Example1_ref 8904 . G GTCTCT . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=7.1271E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:55,73,1,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 8905 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:61,72,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 8906 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:64,73,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 8907 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:64,72,0,0 0/0:.:53:53:0:0%:24,29,0,0 -Example1_ref 8908 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:62,73,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 8909 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:62,74,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 8910 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 8911 . C A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=7.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:62,72,0,1 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 8912 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:62,71,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 8913 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:59,71,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 8914 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:62,71,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 8915 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 8916 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 8917 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:56:56:0:0%:25,31,0,0 -Example1_ref 8918 . G GC . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=2.9534E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:57:56:1:1.75%:25,31,1,0 -Example1_ref 8919 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:60,68,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 8920 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:54,67,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 8921 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:55,69,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 8922 . C A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=4.9281E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:121:2:1.63%:58,63,0,2 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 8923 . C . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:55,70,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 8924 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:52,70,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 8925 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 8926 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:57,68,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 8927 . C A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=7.0811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:60,70,0,1 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 8928 . T G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=7.1271E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:60,68,0,1 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 8929 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:60,70,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 8930 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:57,67,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 8931 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:56,67,0,0 0/0:.:51:51:0:0%:21,30,0,0 -Example1_ref 8932 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:56,70,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 8933 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:58,68,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 8934 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:59,66,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 8935 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:58,67,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 8936 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:55,65,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 8937 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:57,66,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 8938 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:56,65,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 8939 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:54,62,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 8940 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:56,63,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 8941 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:58,62,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 8942 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:58,61,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 8943 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:56,61,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 8944 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:58,61,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 8945 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:55,61,0,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 8946 . G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:57,61,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 8947 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:58,64,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 8948 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:61,64,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 8949 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:63,63,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 8950 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:64,62,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 8951 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:64,61,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 8952 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:62,62,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 8953 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:64,60,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 8954 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:63,62,0,0 0/0:.:55:55:0:0%:24,31,0,0 -Example1_ref 8955 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 8956 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:64,58,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 8957 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 8958 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 8959 . G A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=7.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:63,56,0,1 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 8960 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 8961 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:64,59,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 8962 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:62,59,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 8963 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:64,60,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 8964 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:64,60,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 8965 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 8966 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:63,60,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 8967 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:62,61,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 8968 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:62,58,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 8969 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:60,59,0,0 0/0:.:48:48:0:0%:22,26,0,0 -Example1_ref 8970 . G T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=2.7976E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:61,60,0,0 0/0:.:47:46:1:2.13%:22,24,1,0 -Example1_ref 8971 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:59,62,0,0 0/0:.:46:46:0:0%:21,25,0,0 -Example1_ref 8972 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:62,60,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 8973 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:61,58,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 8974 . G . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 8975 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:60,60,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 8976 . G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 8977 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:56,58,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 8978 . G . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 8979 . A . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 8980 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 8981 . C . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:55,58,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 8982 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 8983 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 8984 . T TG . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=7.0701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:53,57,1,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 8985 . G T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=7.013E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:52,55,1,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 8986 . G T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=6.9753E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:53,59,1,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 8987 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:56,59,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 8988 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:46:46:0:0%:25,21,0,0 -Example1_ref 8989 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:45:45:0:0%:25,20,0,0 -Example1_ref 8990 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 8991 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:54,60,0,0 0/0:.:49:49:0:0%:24,25,0,0 -Example1_ref 8992 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:55,57,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 8993 . G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 8994 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 8995 . G T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=6.9481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:52,54,0,1 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 8996 . C A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=6.9872E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:54,54,0,1 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 8997 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:55,57,0,0 0/0:.:44:44:0:0%:24,20,0,0 -Example1_ref 8998 . A T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=6.962E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:54,55,0,1 0/0:.:48:48:0:0%:26,22,0,0 -Example1_ref 8999 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:46:46:0:0%:25,21,0,0 -Example1_ref 9000 . C A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=3.0519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:55,52,0,0 0/0:.:48:46:1:2.13%:26,20,0,1 -Example1_ref 9001 . G . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:53,56,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 9002 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 9003 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 9004 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:51,55,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 9005 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:52,55,0,0 0/0:.:48:48:0:0%:26,22,0,0 -Example1_ref 9006 . T . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:47:47:0:0%:26,21,0,0 -Example1_ref 9007 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 9008 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:51,54,0,0 0/0:.:45:45:0:0%:24,21,0,0 -Example1_ref 9009 . C A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=6.9863E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:1:0.98%:52,49,0,1 0/0:.:44:44:0:0%:25,19,0,0 -Example1_ref 9010 . C A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=2.8873E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:46,55,0,0 0/0:.:41:40:1:2.44%:20,20,1,0 -Example1_ref 9011 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 9012 . C CA . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=3.1169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:51,55,0,0 0/0:.:48:47:1:2.08%:23,24,1,0 -Example1_ref 9013 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 9014 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 9015 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:50,55,0,0 0/0:.:49:49:0:0%:24,25,0,0 -Example1_ref 9016 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:49,53,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 9017 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:49:49:0:0%:24,25,0,0 -Example1_ref 9018 . ATG A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=6.9677E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:50,57,1,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 9019 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:0:0%:51,58,0,0 0/0:.:49:49:0:0%:24,25,0,0 -Example1_ref 9020 . G . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:0:0%:50,58,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 9021 . A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:51,58,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 9022 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:52,58,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 9023 . G . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 9024 . G . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 9025 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:47,57,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 9026 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:50,56,0,0 0/0:.:46:46:0:0%:22,24,0,0 -Example1_ref 9027 . G . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 9028 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:51,52,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 9029 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 9030 . A G . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=2.875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:56,58,0,0 0/0:.:46:45:1:2.17%:21,24,1,0 -Example1_ref 9031 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 9032 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 9033 . A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 9034 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 9035 . G . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 9036 . A ATCCTG . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=2.8662E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:45:44:1:2.22%:22,22,1,0 -Example1_ref 9037 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:53,54,0,0 0/0:.:44:44:0:0%:21,23,0,0 -Example1_ref 9038 . C . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:40:40:0:0%:21,19,0,0 -Example1_ref 9039 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:55,56,0,0 0/0:.:41:41:0:0%:21,20,0,0 -Example1_ref 9040 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:53,56,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 9041 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:53,57,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9042 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:51,55,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9043 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9044 . G . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:52,55,0,0 0/0:.:44:44:0:0%:21,23,0,0 -Example1_ref 9045 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:52,55,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9046 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9047 . G . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:47,54,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 9048 . AAATT A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=2.7891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:41:40:1:2.44%:17,23,1,0 -Example1_ref 9049 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:51,56,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9050 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:52,57,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9051 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:55,58,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 9052 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9053 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:50,59,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9054 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9055 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 9056 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9057 . A ACTGTCTCT . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=7.2368E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:51,58,1,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9058 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9059 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9060 . T . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:52,58,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9061 . A G . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=7.0548E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:49,53,1,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9062 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:49,57,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9063 . C . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 9064 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:49,56,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9065 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:48,57,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9066 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:48,56,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9067 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9068 . G . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9069 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9070 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:52,53,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9071 . C . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:49,57,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 9072 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9073 . C . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 9074 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:50,57,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9075 . C . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:52,56,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 9076 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9077 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9078 . C . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:52,53,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9079 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:56,52,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 9080 . T . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:54,55,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 9081 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 9082 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:54,54,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 9083 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:52,54,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9084 . A . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:49,54,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 9085 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:46,54,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 9086 . T . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:50,50,0,0 0/0:.:36:36:0:0%:15,21,0,0 -Example1_ref 9087 . C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:47,47,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 9088 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:48,48,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9089 . G . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:49,48,0,0 0/0:.:36:36:0:0%:13,23,0,0 -Example1_ref 9090 . A . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:52,48,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9091 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:51,49,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 9092 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 9093 . A . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:49,48,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 9094 . A . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:51,49,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9095 . T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:50,48,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9096 . G T . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=7.1533E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:49,48,1,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9097 . G . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:47,49,0,0 0/0:.:37:37:0:0%:14,23,0,0 -Example1_ref 9098 . T . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:52,48,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9099 . A . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:50,49,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 9100 . T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:99:0:0%:51,48,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9101 . A . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:50,48,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 9102 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:49,47,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9103 . T . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:49,49,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9104 . C . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:48,50,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 9105 . C . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 9106 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 9107 . T . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:51,45,0,0 0/0:.:39:38:0:0%:17,21,0,0 -Example1_ref 9108 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:36:36:0:0%:17,19,0,0 -Example1_ref 9109 . C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:48,45,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 9110 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:48,45,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 9111 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 9112 . G . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:48,46,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 9113 . A C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=3.0303E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:48,44,0,0 0/0:.:40:39:1:2.5%:17,22,1,0 -Example1_ref 9114 . C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:47,44,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 9115 . A C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=3.0769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:40:39:1:2.5%:16,23,1,0 -Example1_ref 9116 . TG T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=6.9466E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:1:1.1%:46,44,1,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 9117 . G . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9118 . G T . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=6.9291E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:87:1:1.14%:44,43,1,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9119 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:47,43,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 9120 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:47,44,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9121 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:47,45,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 9122 . AC A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=7.0229E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:1:1.09%:46,45,1,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9123 . C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:45,43,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 9124 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:42,43,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9125 . A . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:44,47,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 9126 . T . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:45,45,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 9127 . C . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:43,46,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 9128 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:42,47,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 9129 . A . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:44,48,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 9130 . G T . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=7.218E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:1:1.04%:46,49,1,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 9131 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:47,48,0,0 0/0:.:35:35:0:0%:16,19,0,0 -Example1_ref 9132 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:47,48,0,0 0/0:.:36:36:0:0%:16,20,0,0 -Example1_ref 9133 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:47,48,0,0 0/0:.:35:35:0:0%:16,19,0,0 -Example1_ref 9134 . G . PASS DP=136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:49,49,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 9135 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:49,48,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 9136 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:46,46,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 9137 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:46,48,0,0 0/0:.:37:37:0:0%:17,20,0,0 -Example1_ref 9138 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:45,48,0,0 0/0:.:36:36:0:0%:18,18,0,0 -Example1_ref 9139 . G . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:33:33:0:0%:16,17,0,0 -Example1_ref 9140 . A . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:42,46,0,0 0/0:.:33:33:0:0%:17,16,0,0 -Example1_ref 9141 . G . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:42,46,0,0 0/0:.:31:31:0:0%:15,16,0,0 -Example1_ref 9142 . G . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:41,46,0,0 0/0:.:31:31:0:0%:15,16,0,0 -Example1_ref 9143 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:43,43,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 9144 . G T . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=2.4324E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:42,42,0,0 0/0:.:27:26:1:3.7%:14,12,1,0 -Example1_ref 9145 . G . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:43,42,0,0 0/0:.:28:28:0:0%:17,11,0,0 -Example1_ref 9146 . C . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:43,43,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 9147 . T . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 9148 . A . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 9149 . C A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=2.2807E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:26:25:1:3.85%:15,10,0,1 -Example1_ref 9150 . A . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:44,44,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 9151 . A . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:44,43,0,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 9152 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:43,48,0,0 0/0:.:27:27:0:0%:15,12,0,0 -Example1_ref 9153 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:44,48,0,0 0/0:.:28:28:0:0%:16,12,0,0 -Example1_ref 9154 . A . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:28:28:0:0%:16,12,0,0 -Example1_ref 9155 . G . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:40,44,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 9156 . C . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 9157 . C . PASS DP=110;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:41,43,0,0 0/0:.:26:26:0:0%:16,10,0,0 -Example1_ref 9158 . C . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:41,44,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 9159 . G . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 9160 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 9161 . A T . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=2.4561E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:42,44,0,0 0/0:.:28:27:1:3.57%:14,13,1,0 -Example1_ref 9162 . A . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 9163 . T . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 9164 . G . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:41,44,0,0 0/0:.:30:30:0:0%:17,13,0,0 -Example1_ref 9165 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:42,45,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 9166 . G . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:41,45,0,0 0/0:.:28:28:0:0%:16,12,0,0 -Example1_ref 9167 . G . PASS DP=112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:39,44,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 9168 . T . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:43,43,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 9169 . C . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:43,38,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 9170 . A . PASS DP=115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:43,44,0,0 0/0:.:28:28:0:0%:15,13,0,0 -Example1_ref 9171 . C . PASS DP=114;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:47,38,0,0 0/0:.:29:29:0:0%:16,13,0,0 -Example1_ref 9172 . C . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:47,44,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 9173 . T . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:47,43,0,0 0/0:.:29:29:0:0%:15,14,0,0 -Example1_ref 9174 . T C . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:89:1:1.11%:47,42,0,1 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 9175 . T . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:30:30:0:0%:16,14,0,0 -Example1_ref 9176 . A . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:46,44,0,0 0/0:.:28:28:0:0%:14,14,0,0 -Example1_ref 9177 . A . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:45,44,0,0 0/0:.:28:28:0:0%:14,14,0,0 -Example1_ref 9178 . T A . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=7.6471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:1:1.1%:47,43,0,1 0/0:.:28:28:0:0%:14,14,0,0 -Example1_ref 9179 . A ACTGTCTC . PASS DP=117;SS=0;SSC=0;GPV=1E0;SPV=7.6068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:88:1:1.12%:46,42,1,0 0/0:.:28:28:0:0%:14,14,0,0 -Example1_ref 9180 . T . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:45,40,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 9181 . G . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:82:0:0%:44,38,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 9182 . G . PASS DP=109;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:85:85:0:0%:45,40,0,0 0/0:.:24:24:0:0%:14,10,0,0 -Example1_ref 9183 . G T . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=2.3585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:81:81:0:0%:43,38,0,0 0/0:.:25:24:1:4%:13,11,1,0 -Example1_ref 9184 . G T . PASS DP=107;SS=0;SSC=0;GPV=1E0;SPV=7.6636E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:82:81:1:1.22%:41,40,1,0 0/0:.:25:25:0:0%:14,11,0,0 -Example1_ref 9185 . A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:23:23:0:0%:12,11,0,0 -Example1_ref 9186 . A . PASS DP=106;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:83:83:0:0%:44,39,0,0 0/0:.:23:23:0:0%:12,11,0,0 -Example1_ref 9187 . A . PASS DP=111;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:87:87:0:0%:46,41,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 9188 . G . PASS DP=113;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:48,41,0,0 0/0:.:24:24:0:0%:13,11,0,0 -Example1_ref 9189 . A . PASS DP=116;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:48,42,0,0 0/0:.:26:25:0:0%:14,11,0,0 -Example1_ref 9190 . T . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 9191 . T . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:26:26:0:0%:15,11,0,0 -Example1_ref 9192 . A . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:51,43,0,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 9193 . T . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:28:28:0:0%:17,11,0,0 -Example1_ref 9194 . A . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:51,43,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 9195 . A . PASS DP=120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:27:27:0:0%:16,11,0,0 -Example1_ref 9196 . T . PASS DP=119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:27:27:0:0%:17,10,0,0 -Example1_ref 9197 . C . PASS DP=121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:50,43,0,0 0/0:.:28:28:0:0%:18,10,0,0 -Example1_ref 9198 . T . PASS DP=118;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:26:26:0:0%:18,8,0,0 -Example1_ref 9199 . G . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:54,40,0,0 0/0:.:28:28:0:0%:20,8,0,0 -Example1_ref 9200 . T . PASS DP=122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:27:27:0:0%:20,7,0,0 -Example1_ref 9201 . T . PASS DP=125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:29:29:0:0%:20,9,0,0 -Example1_ref 9202 . A . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:30:30:0:0%:20,10,0,0 -Example1_ref 9203 . G . PASS DP=123;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:28:28:0:0%:19,9,0,0 -Example1_ref 9204 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:30:30:0:0%:20,10,0,0 -Example1_ref 9205 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:29:29:0:0%:19,10,0,0 -Example1_ref 9206 . GAC G . PASS DP=123;SS=0;SSC=0;GPV=1E0;SPV=7.7236E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:94:1:1.05%:51,43,1,0 0/0:.:28:28:0:0%:19,9,0,0 -Example1_ref 9207 . A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:52,44,0,0 0/0:.:30:30:0:0%:20,10,0,0 -Example1_ref 9208 . C A . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=7.8571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:1:1.01%:56,42,0,1 0/0:.:27:27:0:0%:19,8,0,0 -Example1_ref 9209 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:52,42,0,0 0/0:.:30:30:0:0%:20,10,0,0 -Example1_ref 9210 . A . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:53,44,0,0 0/0:.:30:30:0:0%:20,10,0,0 -Example1_ref 9211 . G . PASS DP=126;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:29:29:0:0%:19,10,0,0 -Example1_ref 9212 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:56,45,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 9213 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:0:0%:56,44,0,0 0/0:.:32:32:0:0%:21,11,0,0 -Example1_ref 9214 . G . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:0:0%:52,45,0,0 0/0:.:32:32:0:0%:21,11,0,0 -Example1_ref 9215 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:0:0%:53,45,0,0 0/0:.:32:32:0:0%:21,11,0,0 -Example1_ref 9216 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:54,47,0,0 0/0:.:31:31:0:0%:20,11,0,0 -Example1_ref 9217 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:30:30:0:0%:21,9,0,0 -Example1_ref 9218 . C . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:56,43,0,0 0/0:.:28:28:0:0%:20,8,0,0 -Example1_ref 9219 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:30:30:0:0%:19,11,0,0 -Example1_ref 9220 . C . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:54,47,0,0 0/0:.:31:31:0:0%:21,10,0,0 -Example1_ref 9221 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:31:31:0:0%:21,10,0,0 -Example1_ref 9222 . T . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:0:0%:54,46,0,0 0/0:.:32:32:0:0%:20,12,0,0 -Example1_ref 9223 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:53,47,0,0 0/0:.:32:32:0:0%:20,12,0,0 -Example1_ref 9224 . T . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:54,47,0,0 0/0:.:33:33:0:0%:21,12,0,0 -Example1_ref 9225 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:52,47,0,0 0/0:.:32:32:0:0%:20,12,0,0 -Example1_ref 9226 . G A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:1:1.01%:52,46,0,1 0/0:.:33:33:0:0%:21,12,0,0 -Example1_ref 9227 . A G . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=2.4806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:51,46,0,0 0/0:.:32:31:1:3.12%:19,12,1,0 -Example1_ref 9228 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:33:33:0:0%:21,12,0,0 -Example1_ref 9229 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:33:33:0:0%:21,12,0,0 -Example1_ref 9230 . C . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:54,45,0,0 0/0:.:32:32:0:0%:21,11,0,0 -Example1_ref 9231 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:56,45,0,0 0/0:.:32:32:0:0%:21,11,0,0 -Example1_ref 9232 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:31:31:0:0%:21,10,0,0 -Example1_ref 9233 . C . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:30:30:0:0%:21,9,0,0 -Example1_ref 9234 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:29:29:0:0%:19,10,0,0 -Example1_ref 9235 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:33:33:0:0%:21,12,0,0 -Example1_ref 9236 . G . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:32:32:0:0%:21,11,0,0 -Example1_ref 9237 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:58,45,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9238 . A C . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=7.4638E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:57,45,1,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9239 . T . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:57,44,0,0 0/0:.:32:32:0:0%:20,12,0,0 -Example1_ref 9240 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:32:32:0:0%:19,13,0,0 -Example1_ref 9241 . A . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:55,41,0,0 0/0:.:33:33:0:0%:20,13,0,0 -Example1_ref 9242 . G . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:33:33:0:0%:20,13,0,0 -Example1_ref 9243 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:56,41,0,0 0/0:.:35:35:0:0%:20,15,0,0 -Example1_ref 9244 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:57,41,0,0 0/0:.:32:32:0:0%:19,13,0,0 -Example1_ref 9245 . T . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:56,40,0,0 0/0:.:35:35:0:0%:20,15,0,0 -Example1_ref 9246 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:56,38,0,0 0/0:.:35:35:0:0%:20,15,0,0 -Example1_ref 9247 . G . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:55,41,0,0 0/0:.:33:33:0:0%:19,14,0,0 -Example1_ref 9248 . A . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:53,41,0,0 0/0:.:36:36:0:0%:21,15,0,0 -Example1_ref 9249 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9250 . A . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:34:34:0:0%:20,14,0,0 -Example1_ref 9251 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 9252 . T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:55,40,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 9253 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9254 . G . PASS DP=128;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:33:33:0:0%:21,12,0,0 -Example1_ref 9255 . A . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9256 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9257 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9258 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:34:34:0:0%:20,14,0,0 -Example1_ref 9259 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:56,41,0,0 0/0:.:34:34:0:0%:20,14,0,0 -Example1_ref 9260 . C . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9261 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9262 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9263 . A . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9264 . A . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:57,42,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 9265 . C . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:66,44,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9266 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:68,43,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9267 . A . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9268 . T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:65,42,0,0 0/0:.:33:33:0:0%:20,13,0,0 -Example1_ref 9269 . A G . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=7.6056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:1:0.93%:64,43,0,1 0/0:.:34:34:0:0%:20,14,0,0 -Example1_ref 9270 . A . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:66,44,0,0 0/0:.:35:35:0:0%:21,14,0,0 -Example1_ref 9271 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 9272 . G . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:64,44,0,0 0/0:.:32:32:0:0%:21,11,0,0 -Example1_ref 9273 . G . PASS DP=137;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:62,45,0,0 0/0:.:30:30:0:0%:18,12,0,0 -Example1_ref 9274 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:66,46,0,0 0/0:.:30:30:0:0%:18,12,0,0 -Example1_ref 9275 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:32:32:0:0%:19,13,0,0 -Example1_ref 9276 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:67,46,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 9277 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:68,47,0,0 0/0:.:34:34:0:0%:21,13,0,0 -Example1_ref 9278 . C . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:65,46,0,0 0/0:.:35:35:0:0%:23,12,0,0 -Example1_ref 9279 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:66,49,0,0 0/0:.:37:37:0:0%:23,14,0,0 -Example1_ref 9280 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:39:39:0:0%:24,15,0,0 -Example1_ref 9281 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:67,48,0,0 0/0:.:39:39:0:0%:24,15,0,0 -Example1_ref 9282 . T TTCTGTCTCTTA . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=7.5163E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:66,48,1,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 9283 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:66,47,0,0 0/0:.:39:39:0:0%:24,15,0,0 -Example1_ref 9284 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:66,47,0,0 0/0:.:38:38:0:0%:23,15,0,0 -Example1_ref 9285 . C . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:69,46,0,0 0/0:.:36:36:0:0%:22,14,0,0 -Example1_ref 9286 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:70,46,0,0 0/0:.:36:36:0:0%:23,13,0,0 -Example1_ref 9287 . C . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:68,47,0,0 0/0:.:38:38:0:0%:22,16,0,0 -Example1_ref 9288 . C . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:67,47,0,0 0/0:.:39:39:0:0%:22,17,0,0 -Example1_ref 9289 . T . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:69,47,0,0 0/0:.:37:37:0:0%:21,16,0,0 -Example1_ref 9290 . G . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:70,48,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 9291 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:69,48,0,0 0/0:.:36:36:0:0%:20,16,0,0 -Example1_ref 9292 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:70,49,0,0 0/0:.:36:36:0:0%:19,17,0,0 -Example1_ref 9293 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:70,50,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 9294 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:37:37:0:0%:20,17,0,0 -Example1_ref 9295 . A ACT . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=7.6582E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:70,50,1,0 0/0:.:37:37:0:0%:20,17,0,0 -Example1_ref 9296 . G . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:80,50,0,0 0/0:.:36:36:0:0%:19,17,0,0 -Example1_ref 9297 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:80,51,0,0 0/0:.:36:36:0:0%:19,17,0,0 -Example1_ref 9298 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:0:0%:80,52,0,0 0/0:.:36:36:0:0%:18,18,0,0 -Example1_ref 9299 . T G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=2.0833E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:0:0%:80,53,0,0 0/0:.:35:34:1:2.86%:19,15,0,1 -Example1_ref 9300 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:0:0%:79,52,0,0 0/0:.:35:35:0:0%:19,16,0,0 -Example1_ref 9301 . G A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=7.8916E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:77,53,1,0 0/0:.:36:35:0:0%:19,16,0,0 -Example1_ref 9302 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:33:33:0:0%:16,17,0,0 -Example1_ref 9303 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:82,54,0,0 0/0:.:36:36:0:0%:19,17,0,0 -Example1_ref 9304 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:84,54,0,0 0/0:.:37:37:0:0%:19,18,0,0 -Example1_ref 9305 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:82,52,0,0 0/0:.:35:35:0:0%:19,16,0,0 -Example1_ref 9306 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 9307 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:36:36:0:0%:21,15,0,0 -Example1_ref 9308 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 9309 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:38:38:0:0%:21,17,0,0 -Example1_ref 9310 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:85,49,0,0 0/0:.:37:37:0:0%:19,18,0,0 -Example1_ref 9311 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:85,53,0,0 0/0:.:38:38:0:0%:19,19,0,0 -Example1_ref 9312 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:85,54,0,0 0/0:.:36:36:0:0%:18,18,0,0 -Example1_ref 9313 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:85,56,0,0 0/0:.:37:37:0:0%:18,19,0,0 -Example1_ref 9314 . G . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:83,56,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 9315 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:85,52,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 9316 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:84,55,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 9317 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:85,56,0,0 0/0:.:38:38:0:0%:19,19,0,0 -Example1_ref 9318 . T A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=7.9006E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:87,55,0,1 0/0:.:38:38:0:0%:19,19,0,0 -Example1_ref 9319 . C . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:84,55,0,0 0/0:.:37:37:0:0%:19,18,0,0 -Example1_ref 9320 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:81,54,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 9321 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:83,53,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 9322 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:84,53,0,0 0/0:.:37:37:0:0%:17,20,0,0 -Example1_ref 9323 . G T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=7.7326E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:78,54,1,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 9324 . G T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=7.7515E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:76,54,1,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 9325 . C A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=2.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:79,53,0,0 0/0:.:36:35:1:2.78%:17,18,0,1 -Example1_ref 9326 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:81,53,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 9327 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:80,54,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 9328 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:79,55,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 9329 . T TAAGAGACA . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=7.9191E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:136:1:0.73%:80,56,0,1 0/0:.:36:36:0:0%:16,20,0,0 -Example1_ref 9330 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:81,60,0,0 0/0:.:37:37:0:0%:17,20,0,0 -Example1_ref 9331 . G T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=7.8378E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:84,60,1,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 9332 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:84,60,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 9333 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:86,60,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 9334 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 9335 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9336 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:87,60,0,0 0/0:.:42:42:0:0%:21,21,0,0 -Example1_ref 9337 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:87,61,0,0 0/0:.:41:41:0:0%:21,20,0,0 -Example1_ref 9338 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:89,61,0,0 0/0:.:40:40:0:0%:21,19,0,0 -Example1_ref 9339 . G . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:86,61,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 9340 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:89,59,0,0 0/0:.:40:40:0:0%:21,19,0,0 -Example1_ref 9341 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:87,58,0,0 0/0:.:40:40:0:0%:20,20,0,0 -Example1_ref 9342 . C . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:88,56,0,0 0/0:.:41:41:0:0%:21,20,0,0 -Example1_ref 9343 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:88,62,0,0 0/0:.:42:42:0:0%:21,21,0,0 -Example1_ref 9344 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:88,61,0,0 0/0:.:41:41:0:0%:21,20,0,0 -Example1_ref 9345 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:83,61,0,0 0/0:.:40:40:0:0%:20,20,0,0 -Example1_ref 9346 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:91,60,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9347 . G . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9348 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:90,58,0,0 0/0:.:43:43:0:0%:23,20,0,0 -Example1_ref 9349 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:43:43:0:0%:23,20,0,0 -Example1_ref 9350 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9351 . A T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=7.7665E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:152:1:0.65%:90,62,1,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 9352 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9353 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:94,62,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 9354 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:92,62,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9355 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:92,60,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 9356 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:92,60,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 9357 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:92,61,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9358 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:93,60,0,0 0/0:.:41:41:0:0%:22,19,0,0 -Example1_ref 9359 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:150:0:0%:91,59,0,0 0/0:.:41:41:0:0%:21,20,0,0 -Example1_ref 9360 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:89,62,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 9361 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:88,63,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9362 . A T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=3.9686E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:86,63,1,0 0/0:.:43:42:1:2.33%:21,21,1,0 -Example1_ref 9363 . A C . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=7.772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:86,63,1,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9364 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:92,63,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 9365 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:94,64,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 9366 . T TGGAA . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=2.2167E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:94,64,0,0 0/0:.:45:44:1:2.22%:22,22,1,0 -Example1_ref 9367 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:0:0%:91,64,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 9368 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:92,64,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 9369 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:92,64,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 9370 . A G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=2.1891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:92,65,0,0 0/0:.:44:43:1:2.27%:20,23,1,0 -Example1_ref 9371 . T G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.7723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:94,62,0,1 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 9372 . C T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=2.2167E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:97,61,0,0 0/0:.:45:44:1:2.22%:23,21,1,0 -Example1_ref 9373 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:98,63,0,0 0/0:.:45:45:0:0%:24,21,0,0 -Example1_ref 9374 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:100,64,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 9375 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:100,64,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 9376 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:99,64,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 9377 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:100,64,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 9378 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:98,64,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 9379 . T A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=2.2111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:44:43:1:2.27%:22,21,0,1 -Example1_ref 9380 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:94,63,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 9381 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:92,63,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 9382 . GA G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=7.85E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:94,62,1,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9383 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9384 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:93,63,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9385 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:98,62,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9386 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:103,63,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 9387 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:102,64,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9388 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:101,62,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9389 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:101,63,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 9390 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:99,64,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 9391 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:101,63,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 9392 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:103,63,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9393 . AT A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=8.0095E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:104,64,1,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 9394 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:104,63,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 9395 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:105,63,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9396 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:0:0%:105,57,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 9397 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:0:0%:105,59,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 9398 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:105,60,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9399 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:0:0%:100,59,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 9400 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:100,60,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 9401 . G A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1.8782E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:98,62,0,0 0/0:.:37:36:1:2.7%:18,18,0,1 -Example1_ref 9402 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:96,60,0,0 0/0:.:39:39:0:0%:19,20,0,0 -Example1_ref 9403 . G . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:100,60,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 9404 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:103,64,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 9405 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:106,64,0,0 0/0:.:38:38:0:0%:18,20,0,0 -Example1_ref 9406 . G A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=8.0488E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:104,60,0,1 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 9407 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:103,60,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 9408 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:105,64,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 9409 . A AG . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=7.8873E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:1:0.6%:103,64,0,1 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 9410 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:115,66,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 9411 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:113,67,0,0 0/0:.:51:51:0:0%:27,24,0,0 -Example1_ref 9412 . T G . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=3.8767E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:115,68,1,0 0/0:.:51:50:1:1.96%:28,22,0,1 -Example1_ref 9413 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:112,66,0,0 0/0:.:53:53:0:0%:27,26,0,0 -Example1_ref 9414 . A C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=2.265E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:114,67,0,0 0/0:.:53:52:1:1.89%:27,25,0,1 -Example1_ref 9415 . AT A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=2.2881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:114,68,0,0 0/0:.:54:53:1:1.85%:28,25,0,1 -Example1_ref 9416 . T TTGC . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=7.8059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:115,69,1,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 9417 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:116,72,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 9418 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:0:0%:118,72,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 9419 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:117,70,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 9420 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:117,72,0,0 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 9421 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:115,70,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 9422 . C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:114,70,0,0 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 9423 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:114,66,0,0 0/0:.:54:54:0:0%:26,28,0,0 -Example1_ref 9424 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:113,71,0,0 0/0:.:53:53:0:0%:25,28,0,0 -Example1_ref 9425 . AT A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=7.7593E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:114,72,1,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 9426 . T C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.7083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:113,71,1,0 0/0:.:55:55:0:0%:27,28,0,0 -Example1_ref 9427 . T C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=7.8298E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:183:1:0.54%:112,71,1,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 9428 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:114,71,0,0 0/0:.:52:52:0:0%:26,26,0,0 -Example1_ref 9429 . TG T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=7.7824E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:117,68,0,1 0/0:.:53:53:0:0%:28,25,0,0 -Example1_ref 9430 . G A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=2.2318E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:115,66,0,0 0/0:.:52:51:1:1.92%:26,25,1,0 -Example1_ref 9431 . G . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:115,69,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 9432 . G T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=3.8976E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:110,68,1,0 0/0:.:50:49:1:2%:24,25,1,0 -Example1_ref 9433 . G T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.9412E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:119,69,1,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 9434 . G T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=7.8423E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:188:1:0.53%:116,72,1,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 9435 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:118,72,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 9436 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:119,74,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 9437 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:118,74,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 9438 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:121,74,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 9439 . G T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.9508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:120,73,1,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 9440 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:124,74,0,0 0/0:.:51:51:0:0%:26,25,0,0 -Example1_ref 9441 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:125,74,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 9442 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:124,73,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 9443 . T C . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=7.9592E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:121,73,1,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 9444 . T C . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=7.9116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:124,72,0,1 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 9445 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:124,73,0,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 9446 . G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:118,74,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 9447 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:125,76,0,0 0/0:.:52:52:0:0%:28,24,0,0 -Example1_ref 9448 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:131,75,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 9449 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:133,76,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 9450 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:136,75,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 9451 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:133,75,0,0 0/0:.:53:53:0:0%:28,25,0,0 -Example1_ref 9452 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:133,75,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 9453 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:134,78,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 9454 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:133,83,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 9455 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:214:0:0%:128,86,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 9456 . C . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:124,88,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 9457 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:124,88,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 9458 . T C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=7.8339E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:216:1:0.46%:130,86,1,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 9459 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:132,88,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 9460 . A ACTGTCTC . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=2.1831E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:134,88,0,0 0/0:.:62:61:1:1.61%:32,29,1,0 -Example1_ref 9461 . T C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.8671E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:136,88,1,0 0/0:.:61:61:0:0%:32,29,0,0 -Example1_ref 9462 . T C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.8671E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:136,88,0,1 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 9463 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:133,89,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 9464 . G . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:129,87,0,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 9465 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:133,90,0,0 0/0:.:62:62:0:0%:31,31,0,0 -Example1_ref 9466 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:131,88,0,0 0/0:.:61:61:0:0%:30,31,0,0 -Example1_ref 9467 . C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:132,90,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 9468 . C CTG . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=7.9197E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:128,88,1,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 9469 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:137,88,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 9470 . C A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=7.972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:139,88,0,1 0/0:.:58:58:0:0%:29,29,0,0 -Example1_ref 9471 . T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:138,87,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 9472 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:132,90,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 9473 . G T . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.9577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:136,89,1,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 9474 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:141,88,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 9475 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:139,91,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 9476 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:138,91,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 9477 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:138,93,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 9478 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:140,93,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 9479 . T TAAGAGACAG . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=6.4055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:231:2:0.86%:142,89,0,2 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 9480 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:144,87,0,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 9481 . C CTGTCT . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=8.0071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:135,89,1,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 9482 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:0:0%:144,86,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 9483 . T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:0:0%:143,87,0,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 9484 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:0:0%:142,86,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 9485 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:0:0%:146,88,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 9486 . T TCTG . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.8397E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:137,87,1,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 9487 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:136,87,0,0 0/0:.:63:63:0:0%:37,26,0,0 -Example1_ref 9488 . C . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:134,86,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 9489 . A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:136,87,0,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 9490 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:135,87,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 9491 . ACT A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=2.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:133,87,0,0 0/0:.:60:59:1:1.67%:35,24,1,0 -Example1_ref 9492 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:138,85,0,0 0/0:.:64:64:0:0%:38,26,0,0 -Example1_ref 9493 . T A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=7.7113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:218:1:0.46%:137,81,1,0 0/0:.:65:65:0:0%:38,27,0,0 -Example1_ref 9494 . C . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:134,85,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 9495 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:135,84,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 9496 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:134,87,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 9497 . G . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:130,87,0,0 0/0:.:65:65:0:0%:37,28,0,0 -Example1_ref 9498 . A G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=2.1754E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:133,90,0,0 0/0:.:62:61:1:1.61%:33,28,1,0 -Example1_ref 9499 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:135,87,0,0 0/0:.:60:60:0:0%:35,25,0,0 -Example1_ref 9500 . C . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:131,85,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 9501 . C A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=2.2022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:129,87,0,0 0/0:.:61:60:1:1.64%:35,25,0,1 -Example1_ref 9502 . T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:133,88,0,0 0/0:.:62:62:0:0%:38,24,0,0 -Example1_ref 9503 . G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:136,85,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9504 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:138,86,0,0 0/0:.:64:64:0:0%:40,24,0,0 -Example1_ref 9505 . C T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=7.7739E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:136,83,0,1 0/0:.:63:63:0:0%:39,24,0,0 -Example1_ref 9506 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:136,85,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9507 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:130,86,0,0 0/0:.:64:64:0:0%:38,26,0,0 -Example1_ref 9508 . A T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=7.7032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:132,85,1,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9509 . C . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:135,86,0,0 0/0:.:68:68:0:0%:41,27,0,0 -Example1_ref 9510 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:137,89,0,0 0/0:.:71:71:0:0%:41,30,0,0 -Example1_ref 9511 . A . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:138,91,0,0 0/0:.:71:71:0:0%:41,30,0,0 -Example1_ref 9512 . C . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:142,92,0,0 0/0:.:72:72:0:0%:41,31,0,0 -Example1_ref 9513 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:138,93,0,0 0/0:.:70:70:0:0%:41,29,0,0 -Example1_ref 9514 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:141,92,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 9515 . A . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:136,92,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 9516 . G T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=2.4161E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:137,89,0,0 0/0:.:72:71:1:1.39%:40,31,0,1 -Example1_ref 9517 . G T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=7.6712E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:136,87,1,0 0/0:.:68:68:0:0%:38,30,0,0 -Example1_ref 9518 . G A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=7.5839E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:136,89,0,1 0/0:.:72:72:0:0%:41,31,0,0 -Example1_ref 9519 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:138,91,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 9520 . T . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:142,89,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 9521 . G . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:139,86,0,0 0/0:.:68:68:0:0%:40,28,0,0 -Example1_ref 9522 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:141,85,0,0 0/0:.:70:70:0:0%:41,29,0,0 -Example1_ref 9523 . T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:138,87,0,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 9524 . T TCTGTC . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=2.3457E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:157,91,0,0 0/0:.:76:75:1:1.32%:43,32,1,0 -Example1_ref 9525 . T C . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=2.3313E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:158,92,0,0 0/0:.:77:75:1:1.32%:42,33,1,0 -Example1_ref 9526 . C A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=4.123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:166,93,1,0 0/0:.:79:78:1:1.27%:45,33,1,0 -Example1_ref 9527 . T C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.6012E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:166,96,1,0 0/0:.:83:83:0:0%:47,36,0,0 -Example1_ref 9528 . T . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:0:0%:166,96,0,0 0/0:.:83:83:0:0%:47,36,0,0 -Example1_ref 9529 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:164,97,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 9530 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:168,97,0,0 0/0:.:83:83:0:0%:47,36,0,0 -Example1_ref 9531 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:168,102,0,0 0/0:.:84:84:0:0%:47,37,0,0 -Example1_ref 9532 . T C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=7.5706E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:267:1:0.37%:169,98,1,0 0/0:.:86:86:0:0%:50,36,0,0 -Example1_ref 9533 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:169,93,0,0 0/0:.:86:86:0:0%:51,35,0,0 -Example1_ref 9534 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:168,94,0,0 0/0:.:83:83:0:0%:48,35,0,0 -Example1_ref 9535 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:169,97,0,0 0/0:.:86:86:0:0%:50,36,0,0 -Example1_ref 9536 . G . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:166,97,0,0 0/0:.:90:90:0:0%:53,37,0,0 -Example1_ref 9537 . T C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:1:0.37%:171,98,1,0 0/0:.:90:90:0:0%:54,36,0,0 -Example1_ref 9538 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:169,97,0,0 0/0:.:88:88:0:0%:53,35,0,0 -Example1_ref 9539 . T C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=2.4862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:173,99,0,0 0/0:.:90:89:1:1.11%:54,35,0,1 -Example1_ref 9540 . T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:172,101,0,0 0/0:.:90:90:0:0%:55,35,0,0 -Example1_ref 9541 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:177,101,0,0 0/0:.:91:91:0:0%:53,38,0,0 -Example1_ref 9542 . T G . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=2.4932E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:176,98,0,0 0/0:.:91:90:1:1.1%:54,36,1,0 -Example1_ref 9543 . C . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:174,97,0,0 0/0:.:92:92:0:0%:54,38,0,0 -Example1_ref 9544 . T . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:176,100,0,0 0/0:.:93:93:0:0%:55,38,0,0 -Example1_ref 9545 . G . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:177,99,0,0 0/0:.:90:90:0:0%:54,36,0,0 -Example1_ref 9546 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:172,100,0,0 0/0:.:88:88:0:0%:53,35,0,0 -Example1_ref 9547 . G T . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=7.5616E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:176,99,1,0 0/0:.:89:89:0:0%:52,37,0,0 -Example1_ref 9548 . ATG A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=7.5758E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:171,103,0,1 0/0:.:88:88:0:0%:50,38,0,0 -Example1_ref 9549 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:0:0%:175,104,0,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 9550 . G . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:0:0%:179,114,0,0 0/0:.:91:91:0:0%:53,38,0,0 -Example1_ref 9551 . G T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=4.2429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:178,114,1,0 0/0:.:93:92:1:1.08%:52,40,1,0 -Example1_ref 9552 . A ACAG . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=7.5888E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:177,121,0,1 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 9553 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:174,121,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 9554 . T . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:177,126,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 9555 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:181,126,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 9556 . G A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=7.6263E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:177,124,0,1 0/0:.:94:94:0:0%:51,43,0,0 -Example1_ref 9557 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:178,128,0,0 0/0:.:96:96:0:0%:52,44,0,0 -Example1_ref 9558 . T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:181,131,0,0 0/0:.:97:97:0:0%:53,44,0,0 -Example1_ref 9559 . ATTT A . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=7.6399E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:181,132,0,1 0/0:.:97:97:0:0%:53,44,0,0 -Example1_ref 9560 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:178,128,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 9561 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:182,129,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 9562 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:0:0%:177,132,0,0 0/0:.:94:94:0:0%:52,42,0,0 -Example1_ref 9563 . G T . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=7.6692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:173,132,1,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 9564 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:176,132,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 9565 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:172,135,0,0 0/0:.:95:95:0:0%:52,43,0,0 -Example1_ref 9566 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:173,132,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 9567 . C A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=7.6167E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:176,133,0,1 0/0:.:97:97:0:0%:54,43,0,0 -Example1_ref 9568 . T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:174,135,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 9569 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:175,135,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 9570 . G . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:170,134,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 9571 . A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:168,133,0,0 0/0:.:98:98:0:0%:53,45,0,0 -Example1_ref 9572 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:165,132,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 9573 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:164,130,0,0 0/0:.:98:98:0:0%:54,44,0,0 -Example1_ref 9574 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:167,128,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 9575 . T . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:167,124,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 9576 . C . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:165,122,0,0 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 9577 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:163,130,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 9578 . A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:160,131,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 9579 . T . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:162,131,0,0 0/0:.:99:99:0:0%:54,45,0,0 -Example1_ref 9580 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:165,129,0,0 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 9581 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:165,130,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 9582 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:161,128,0,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 9583 . G . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:158,127,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 9584 . G . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:155,134,0,0 0/0:.:101:101:0:0%:52,49,0,0 -Example1_ref 9585 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:155,137,0,0 0/0:.:102:102:0:0%:50,52,0,0 -Example1_ref 9586 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:158,141,0,0 0/0:.:108:108:0:0%:53,55,0,0 -Example1_ref 9587 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:159,136,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 9588 . T . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:157,139,0,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 9589 . T . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:160,141,0,0 0/0:.:106:106:0:0%:53,53,0,0 -Example1_ref 9590 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:158,142,0,0 0/0:.:108:108:0:0%:54,54,0,0 -Example1_ref 9591 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:157,143,0,0 0/0:.:106:106:0:0%:54,52,0,0 -Example1_ref 9592 . G T . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=7.4177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:155,137,1,0 0/0:.:102:102:0:0%:53,49,0,0 -Example1_ref 9593 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:153,140,0,0 0/0:.:101:101:0:0%:50,51,0,0 -Example1_ref 9594 . G GC . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=5.9994E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:293:2:0.68%:154,139,2,0 0/0:.:105:104:1:0.95%:52,52,1,0 -Example1_ref 9595 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:160,143,0,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 9596 . G A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=7.4201E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:159,142,0,1 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 9597 . T TATAAGAGACAG . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=2.6024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:159,148,0,0 0/0:.:108:107:1:0.93%:55,52,0,1 -Example1_ref 9598 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:163,148,0,0 0/0:.:105:105:0:0%:52,53,0,0 -Example1_ref 9599 . G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:154,146,0,0 0/0:.:100:99:0:0%:48,51,0,0 -Example1_ref 9600 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:151,149,0,0 0/0:.:103:103:0:0%:48,55,0,0 -Example1_ref 9601 . T . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:156,149,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 9602 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:156,148,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 9603 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:156,152,0,0 0/0:.:100:100:0:0%:47,53,0,0 -Example1_ref 9604 . C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:156,148,0,0 0/0:.:100:100:0:0%:48,52,0,0 -Example1_ref 9605 . A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:157,149,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 9606 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:156,149,0,0 0/0:.:101:101:0:0%:47,54,0,0 -Example1_ref 9607 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:156,145,0,0 0/0:.:103:103:0:0%:48,55,0,0 -Example1_ref 9608 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:154,148,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 9609 . A G . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=2.5926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:153,147,0,0 0/0:.:105:104:1:0.95%:49,55,0,1 -Example1_ref 9610 . T . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:155,148,0,0 0/0:.:104:104:0:0%:49,55,0,0 -Example1_ref 9611 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:153,151,0,0 0/0:.:105:105:0:0%:49,56,0,0 -Example1_ref 9612 . A G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=7.525E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:152,148,0,1 0/0:.:99:99:0:0%:45,54,0,0 -Example1_ref 9613 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:154,148,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 9614 . A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:150,149,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 9615 . T . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:151,150,0,0 0/0:.:102:101:0:0%:48,53,0,0 -Example1_ref 9616 . C . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:152,151,0,0 0/0:.:103:103:0:0%:48,55,0,0 -Example1_ref 9617 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:152,155,0,0 0/0:.:104:104:0:0%:49,55,0,0 -Example1_ref 9618 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:153,156,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 9619 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:102:102:0:0%:47,55,0,0 -Example1_ref 9620 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:148,153,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 9621 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:150,156,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 9622 . T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:150,157,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 9623 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:144,154,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 9624 . T TCTG . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=7.4177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:145,147,1,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 9625 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:144,150,0,0 0/0:.:100:100:0:0%:48,52,0,0 -Example1_ref 9626 . T . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:144,149,0,0 0/0:.:100:100:0:0%:48,52,0,0 -Example1_ref 9627 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:144,152,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 9628 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:145,150,0,0 0/0:.:103:103:0:0%:48,55,0,0 -Example1_ref 9629 . G T . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=7.4564E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:143,155,1,0 0/0:.:102:102:0:0%:46,56,0,0 -Example1_ref 9630 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:0:0%:143,161,0,0 0/0:.:108:108:0:0%:46,62,0,0 -Example1_ref 9631 . T A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=2.5845E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:0:0%:145,162,0,0 0/0:.:107:106:1:0.93%:47,59,0,1 -Example1_ref 9632 . A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:144,162,0,0 0/0:.:108:108:0:0%:47,61,0,0 -Example1_ref 9633 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:141,163,0,0 0/0:.:106:106:0:0%:47,59,0,0 -Example1_ref 9634 . A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:145,161,0,0 0/0:.:108:108:0:0%:49,59,0,0 -Example1_ref 9635 . T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:148,158,0,0 0/0:.:106:106:0:0%:48,58,0,0 -Example1_ref 9636 . C . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:144,161,0,0 0/0:.:106:106:0:0%:48,58,0,0 -Example1_ref 9637 . T . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:147,163,0,0 0/0:.:107:107:0:0%:48,59,0,0 -Example1_ref 9638 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:151,167,0,0 0/0:.:107:107:0:0%:47,60,0,0 -Example1_ref 9639 . C . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:148,161,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 9640 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:149,166,0,0 0/0:.:107:107:0:0%:47,60,0,0 -Example1_ref 9641 . A . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:144,166,0,0 0/0:.:105:105:0:0%:47,58,0,0 -Example1_ref 9642 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:146,167,0,0 0/0:.:107:107:0:0%:48,59,0,0 -Example1_ref 9643 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:147,152,0,0 0/0:.:107:107:0:0%:48,59,0,0 -Example1_ref 9644 . G . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:142,153,0,0 0/0:.:106:106:0:0%:47,59,0,0 -Example1_ref 9645 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:140,151,0,0 0/0:.:105:105:0:0%:46,59,0,0 -Example1_ref 9646 . T TGTGTATAAGAGACA . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=2.6263E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:142,150,0,0 0/0:.:104:103:1:0.96%:45,58,0,1 -Example1_ref 9647 . G A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.3077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:134,150,0,1 0/0:.:105:105:0:0%:45,60,0,0 -Example1_ref 9648 . A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:135,150,0,0 0/0:.:106:105:0:0%:45,60,0,0 -Example1_ref 9649 . A G . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=7.3402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:135,151,0,1 0/0:.:104:104:0:0%:44,60,0,0 -Example1_ref 9650 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:132,151,0,0 0/0:.:105:105:0:0%:44,61,0,0 -Example1_ref 9651 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:134,149,0,0 0/0:.:105:105:0:0%:46,59,0,0 -Example1_ref 9652 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:132,151,0,0 0/0:.:104:104:0:0%:45,59,0,0 -Example1_ref 9653 . G . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:131,150,0,0 0/0:.:102:102:0:0%:45,57,0,0 -Example1_ref 9654 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:132,146,0,0 0/0:.:102:102:0:0%:44,58,0,0 -Example1_ref 9655 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:133,146,0,0 0/0:.:105:104:0:0%:46,58,0,0 -Example1_ref 9656 . G T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=7.2632E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:131,144,0,1 0/0:.:104:104:0:0%:45,59,0,0 -Example1_ref 9657 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:129,141,0,0 0/0:.:100:100:0:0%:43,57,0,0 -Example1_ref 9658 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:125,140,0,0 0/0:.:103:103:0:0%:44,59,0,0 -Example1_ref 9659 . A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:120,142,0,0 0/0:.:101:101:0:0%:43,58,0,0 -Example1_ref 9660 . T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:123,139,0,0 0/0:.:101:101:0:0%:44,57,0,0 -Example1_ref 9661 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:120,140,0,0 0/0:.:102:102:0:0%:44,58,0,0 -Example1_ref 9662 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:121,138,0,0 0/0:.:101:101:0:0%:45,56,0,0 -Example1_ref 9663 . T . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:122,138,0,0 0/0:.:101:101:0:0%:43,58,0,0 -Example1_ref 9664 . C . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:118,138,0,0 0/0:.:98:98:0:0%:42,56,0,0 -Example1_ref 9665 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:119,141,0,0 0/0:.:98:98:0:0%:43,55,0,0 -Example1_ref 9666 . CT C . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=6.2181E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:255:2:0.78%:117,138,1,1 0/0:.:98:97:1:1.02%:44,53,0,1 -Example1_ref 9667 . T . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:119,136,0,0 0/0:.:100:100:0:0%:44,56,0,0 -Example1_ref 9668 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:118,139,0,0 0/0:.:101:101:0:0%:44,57,0,0 -Example1_ref 9669 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:115,137,0,0 0/0:.:100:100:0:0%:43,57,0,0 -Example1_ref 9670 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:111,140,0,0 0/0:.:101:101:0:0%:44,57,0,0 -Example1_ref 9671 . T G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.2191E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:113,143,0,1 0/0:.:99:99:0:0%:43,56,0,0 -Example1_ref 9672 . T C . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=7.1671E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:111,141,0,1 0/0:.:100:100:0:0%:44,56,0,0 -Example1_ref 9673 . T A . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=7.2269E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:113,144,0,1 0/0:.:99:99:0:0%:44,55,0,0 -Example1_ref 9674 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:112,147,0,0 0/0:.:101:101:0:0%:41,60,0,0 -Example1_ref 9675 . G . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:110,147,0,0 0/0:.:96:96:0:0%:37,59,0,0 -Example1_ref 9676 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:109,144,0,0 0/0:.:97:97:0:0%:37,60,0,0 -Example1_ref 9677 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:108,146,0,0 0/0:.:102:102:0:0%:39,63,0,0 -Example1_ref 9678 . C . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:114,140,0,0 0/0:.:94:94:0:0%:36,58,0,0 -Example1_ref 9679 . C T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=4.892E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:105,140,0,1 0/0:.:98:97:1:1.02%:34,63,1,0 -Example1_ref 9680 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:112,137,0,0 0/0:.:95:95:0:0%:39,56,0,0 -Example1_ref 9681 . T . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:113,145,0,0 0/0:.:97:97:0:0%:38,59,0,0 -Example1_ref 9682 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:110,145,0,0 0/0:.:97:97:0:0%:37,60,0,0 -Example1_ref 9683 . G T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=5.3862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:255:2:0.78%:108,147,2,0 0/0:.:93:93:0:0%:33,60,0,0 -Example1_ref 9684 . G T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=6.149E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:242:2:0.82%:101,141,2,0 0/0:.:91:90:1:1.1%:29,61,1,0 -Example1_ref 9685 . G T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.2059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:98,146,1,0 0/0:.:95:95:0:0%:33,62,0,0 -Example1_ref 9686 . C . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:111,144,0,0 0/0:.:98:98:0:0%:36,62,0,0 -Example1_ref 9687 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:114,144,0,0 0/0:.:98:98:0:0%:37,61,0,0 -Example1_ref 9688 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:111,142,0,0 0/0:.:97:97:0:0%:37,60,0,0 -Example1_ref 9689 . C A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=4.8386E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:109,138,0,1 0/0:.:97:96:1:1.03%:37,59,0,1 -Example1_ref 9690 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:112,137,0,0 0/0:.:95:95:0:0%:37,58,0,0 -Example1_ref 9691 . T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:112,138,0,0 0/0:.:93:93:0:0%:36,57,0,0 -Example1_ref 9692 . C . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:114,137,0,0 0/0:.:96:96:0:0%:37,59,0,0 -Example1_ref 9693 . C . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:113,140,0,0 0/0:.:94:94:0:0%:35,59,0,0 -Example1_ref 9694 . A T . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=7.2676E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:113,144,1,0 0/0:.:97:97:0:0%:35,62,0,0 -Example1_ref 9695 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:117,141,0,0 0/0:.:96:96:0:0%:35,61,0,0 -Example1_ref 9696 . TAG T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=2.7374E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:116,144,0,0 0/0:.:98:97:1:1.02%:35,62,0,1 -Example1_ref 9697 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:113,140,0,0 0/0:.:96:96:0:0%:34,62,0,0 -Example1_ref 9698 . G T . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=7.2861E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:103,143,1,0 0/0:.:92:92:0:0%:30,62,0,0 -Example1_ref 9699 . A T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=7.4684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:102,133,1,0 0/0:.:80:80:0:0%:29,51,0,0 -Example1_ref 9700 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:107,129,0,0 0/0:.:74:74:0:0%:27,47,0,0 -Example1_ref 9701 . G T . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=7.4267E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:100,127,1,0 0/0:.:79:79:0:0%:28,51,0,0 -Example1_ref 9702 . C . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:104,127,0,0 0/0:.:79:78:0:0%:29,49,0,0 -Example1_ref 9703 . T TGTCTCTTATAC . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.4839E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:105,126,1,0 0/0:.:78:78:0:0%:27,51,0,0 -Example1_ref 9704 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:105,128,0,0 0/0:.:79:79:0:0%:28,51,0,0 -Example1_ref 9705 . G T . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=7.4598E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:104,127,0,1 0/0:.:79:79:0:0%:28,51,0,0 -Example1_ref 9706 . T . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:105,125,0,0 0/0:.:79:79:0:0%:29,50,0,0 -Example1_ref 9707 . A ATCTG . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.4038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:102,128,1,0 0/0:.:81:81:0:0%:29,52,0,0 -Example1_ref 9708 . T TC . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.3701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:103,123,1,0 0/0:.:81:81:0:0%:29,52,0,0 -Example1_ref 9709 . T . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:101,122,0,0 0/0:.:77:77:0:0%:29,48,0,0 -Example1_ref 9710 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:101,124,0,0 0/0:.:73:73:0:0%:25,48,0,0 -Example1_ref 9711 . C T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=2.585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:98,120,0,0 0/0:.:76:75:1:1.32%:27,48,0,1 -Example1_ref 9712 . A . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:101,123,0,0 0/0:.:75:75:0:0%:26,49,0,0 -Example1_ref 9713 . G A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=7.3868E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:90,121,1,0 0/0:.:75:75:0:0%:26,49,0,0 -Example1_ref 9714 . C A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=7.3308E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:79,115,0,1 0/0:.:71:71:0:0%:24,47,0,0 -Example1_ref 9715 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:81,120,0,0 0/0:.:73:73:0:0%:24,49,0,0 -Example1_ref 9716 . G . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:77,120,0,0 0/0:.:71:71:0:0%:23,48,0,0 -Example1_ref 9717 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:71:71:0:0%:22,49,0,0 -Example1_ref 9718 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:79,119,0,0 0/0:.:71:71:0:0%:22,49,0,0 -Example1_ref 9719 . A G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=2.7037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:76,121,0,0 0/0:.:73:72:1:1.37%:24,48,0,1 -Example1_ref 9720 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:77,121,0,0 0/0:.:69:69:0:0%:22,47,0,0 -Example1_ref 9721 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:78,119,0,0 0/0:.:68:68:0:0%:21,47,0,0 -Example1_ref 9722 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:198:0:0%:76,122,0,0 0/0:.:65:65:0:0%:20,45,0,0 -Example1_ref 9723 . T . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:78,121,0,0 0/0:.:70:70:0:0%:23,47,0,0 -Example1_ref 9724 . T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:79,123,0,0 0/0:.:69:69:0:0%:22,47,0,0 -Example1_ref 9725 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:78,124,0,0 0/0:.:69:69:0:0%:22,47,0,0 -Example1_ref 9726 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:73,123,0,0 0/0:.:64:64:0:0%:17,47,0,0 -Example1_ref 9727 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:71,124,0,0 0/0:.:66:66:0:0%:17,49,0,0 -Example1_ref 9728 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:75,125,0,0 0/0:.:68:68:0:0%:19,49,0,0 -Example1_ref 9729 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:72,125,0,0 0/0:.:68:68:0:0%:19,49,0,0 -Example1_ref 9730 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:75,124,0,0 0/0:.:69:69:0:0%:21,48,0,0 -Example1_ref 9731 . T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:68,124,0,0 0/0:.:69:69:0:0%:22,47,0,0 -Example1_ref 9732 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:68,124,0,0 0/0:.:69:69:0:0%:21,48,0,0 -Example1_ref 9733 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:70,124,0,0 0/0:.:68:68:0:0%:20,48,0,0 -Example1_ref 9734 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:69,124,0,0 0/0:.:69:68:0:0%:20,48,0,0 -Example1_ref 9735 . T A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=7.3282E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:191:1:0.52%:69,122,0,1 0/0:.:70:70:0:0%:21,49,0,0 -Example1_ref 9736 . GT G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=5.4041E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:190:2:1.04%:66,124,2,0 0/0:.:69:69:0:0%:20,49,0,0 -Example1_ref 9737 . T . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:187:0:0%:68,119,0,0 0/0:.:69:69:0:0%:21,48,0,0 -Example1_ref 9738 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:70,118,0,0 0/0:.:70:70:0:0%:21,49,0,0 -Example1_ref 9739 . T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:67,110,0,0 0/0:.:68:68:0:0%:21,47,0,0 -Example1_ref 9740 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:68,107,0,0 0/0:.:67:67:0:0%:20,47,0,0 -Example1_ref 9741 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:66,107,0,0 0/0:.:66:66:0:0%:21,45,0,0 -Example1_ref 9742 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:63,101,0,0 0/0:.:64:64:0:0%:21,43,0,0 -Example1_ref 9743 . G GC . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.2889E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:61,102,1,0 0/0:.:61:61:0:0%:18,43,0,0 -Example1_ref 9744 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:64,94,0,0 0/0:.:64:64:0:0%:20,44,0,0 -Example1_ref 9745 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:62,94,0,0 0/0:.:62:62:0:0%:19,43,0,0 -Example1_ref 9746 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:65:65:0:0%:21,44,0,0 -Example1_ref 9747 . A C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=6.9811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:64,83,0,1 0/0:.:64:64:0:0%:21,43,0,0 -Example1_ref 9748 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:62,86,0,0 0/0:.:64:64:0:0%:21,43,0,0 -Example1_ref 9749 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:63,85,0,0 0/0:.:62:62:0:0%:21,41,0,0 -Example1_ref 9750 . A T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=6.9953E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:63,85,1,0 0/0:.:64:64:0:0%:21,43,0,0 -Example1_ref 9751 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:61,88,0,0 0/0:.:65:65:0:0%:21,44,0,0 -Example1_ref 9752 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:66,87,0,0 0/0:.:64:64:0:0%:21,43,0,0 -Example1_ref 9753 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:66,86,0,0 0/0:.:64:64:0:0%:21,43,0,0 -Example1_ref 9754 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:63,88,0,0 0/0:.:65:65:0:0%:21,44,0,0 -Example1_ref 9755 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:63,88,0,0 0/0:.:65:65:0:0%:21,44,0,0 -Example1_ref 9756 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:62,89,0,0 0/0:.:62:62:0:0%:20,42,0,0 -Example1_ref 9757 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:64,89,0,0 0/0:.:60:60:0:0%:17,43,0,0 -Example1_ref 9758 . T C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=2.8302E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:63,89,0,0 0/0:.:60:59:1:1.67%:17,42,1,0 -Example1_ref 9759 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:62,89,0,0 0/0:.:61:61:0:0%:18,43,0,0 -Example1_ref 9760 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:61,88,0,0 0/0:.:60:60:0:0%:18,42,0,0 -Example1_ref 9761 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:60,88,0,0 0/0:.:58:58:0:0%:16,42,0,0 -Example1_ref 9762 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:59,90,0,0 0/0:.:59:59:0:0%:16,43,0,0 -Example1_ref 9763 . C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:59:59:0:0%:18,41,0,0 -Example1_ref 9764 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:61,88,0,0 0/0:.:61:61:0:0%:18,43,0,0 -Example1_ref 9765 . C A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=2.77E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:63,91,0,0 0/0:.:59:58:1:1.69%:18,40,0,1 -Example1_ref 9766 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:64,87,0,0 0/0:.:58:58:0:0%:18,40,0,0 -Example1_ref 9767 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:67,90,0,0 0/0:.:59:59:0:0%:18,41,0,0 -Example1_ref 9768 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:65,85,0,0 0/0:.:59:59:0:0%:19,40,0,0 -Example1_ref 9769 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:68,90,0,0 0/0:.:60:60:0:0%:19,41,0,0 -Example1_ref 9770 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:69,91,0,0 0/0:.:59:59:0:0%:19,40,0,0 -Example1_ref 9771 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:67,89,0,0 0/0:.:60:60:0:0%:19,41,0,0 -Example1_ref 9772 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:68,89,0,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 9773 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:67,88,0,0 0/0:.:57:57:0:0%:18,39,0,0 -Example1_ref 9774 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:67,80,0,0 0/0:.:45:45:0:0%:16,29,0,0 -Example1_ref 9775 . A AC . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=7.513E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:66,78,1,0 0/0:.:48:48:0:0%:17,31,0,0 -Example1_ref 9776 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:66,73,0,0 0/0:.:46:46:0:0%:18,28,0,0 -Example1_ref 9777 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:63,73,0,0 0/0:.:46:46:0:0%:17,29,0,0 -Example1_ref 9778 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:65,69,0,0 0/0:.:46:46:0:0%:18,28,0,0 -Example1_ref 9779 . C CTCT . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=7.2832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:59,66,1,0 0/0:.:47:47:0:0%:18,29,0,0 -Example1_ref 9780 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:64,66,0,0 0/0:.:46:46:0:0%:17,29,0,0 -Example1_ref 9781 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:66,66,0,0 0/0:.:46:46:0:0%:18,28,0,0 -Example1_ref 9782 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:45:45:0:0%:16,29,0,0 -Example1_ref 9783 . C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:64,66,0,0 0/0:.:45:45:0:0%:16,29,0,0 -Example1_ref 9784 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:63,67,0,0 0/0:.:46:46:0:0%:17,29,0,0 -Example1_ref 9785 . AT A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=7.4011E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:1:0.76%:63,67,1,0 0/0:.:46:46:0:0%:17,29,0,0 -Example1_ref 9786 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:44:44:0:0%:17,27,0,0 -Example1_ref 9787 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:63,66,0,0 0/0:.:44:44:0:0%:17,27,0,0 -Example1_ref 9788 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:59,65,0,0 0/0:.:45:45:0:0%:17,28,0,0 -Example1_ref 9789 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:59,63,0,0 0/0:.:44:44:0:0%:16,28,0,0 -Example1_ref 9790 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:61,65,0,0 0/0:.:45:45:0:0%:17,28,0,0 -Example1_ref 9791 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:59,61,0,0 0/0:.:45:45:0:0%:16,29,0,0 -Example1_ref 9792 . G A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=7.2353E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:61,61,1,0 0/0:.:47:47:0:0%:18,29,0,0 -Example1_ref 9793 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:47:47:0:0%:18,29,0,0 -Example1_ref 9794 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:44:44:0:0%:17,27,0,0 -Example1_ref 9795 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:62,62,0,0 0/0:.:45:45:0:0%:18,27,0,0 -Example1_ref 9796 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 9797 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:63,64,0,0 0/0:.:43:43:0:0%:17,26,0,0 -Example1_ref 9798 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:60,63,0,0 0/0:.:42:42:0:0%:17,25,0,0 -Example1_ref 9799 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:41:41:0:0%:16,25,0,0 -Example1_ref 9800 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:60,64,0,0 0/0:.:43:43:0:0%:17,26,0,0 -Example1_ref 9801 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:42:42:0:0%:17,25,0,0 -Example1_ref 9802 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:64,62,0,0 0/0:.:42:42:0:0%:17,25,0,0 -Example1_ref 9803 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:66,62,0,0 0/0:.:42:42:0:0%:16,26,0,0 -Example1_ref 9804 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:65,64,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 9805 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:66,64,0,0 0/0:.:42:42:0:0%:16,26,0,0 -Example1_ref 9806 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:65,62,0,0 0/0:.:40:40:0:0%:16,24,0,0 -Example1_ref 9807 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:65,66,0,0 0/0:.:39:39:0:0%:16,23,0,0 -Example1_ref 9808 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:64,66,0,0 0/0:.:40:40:0:0%:15,25,0,0 -Example1_ref 9809 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:64,64,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 9810 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:73,64,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 9811 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:72,62,0,0 0/0:.:49:49:0:0%:22,27,0,0 -Example1_ref 9812 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 9813 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:76,63,0,0 0/0:.:53:53:0:0%:26,27,0,0 -Example1_ref 9814 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:75,63,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 9815 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:0:0%:77,63,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 9816 . G . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:77,65,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 9817 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:76,66,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 9818 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:71,69,0,0 0/0:.:52:51:0:0%:24,27,0,0 -Example1_ref 9819 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:75,55,0,0 0/0:.:45:45:0:0%:24,21,0,0 -Example1_ref 9820 . G . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:73,55,0,0 0/0:.:44:44:0:0%:26,18,0,0 -Example1_ref 9821 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:76,58,0,0 0/0:.:44:44:0:0%:25,19,0,0 -Example1_ref 9822 . GGC G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=7.4269E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:73,53,0,1 0/0:.:44:44:0:0%:24,20,0,0 -Example1_ref 9823 . G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:0:0%:71,54,0,0 0/0:.:43:43:0:0%:25,18,0,0 -Example1_ref 9824 . C . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:71,57,0,0 0/0:.:45:45:0:0%:25,20,0,0 -Example1_ref 9825 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:77,58,0,0 0/0:.:46:46:0:0%:26,20,0,0 -Example1_ref 9826 . T G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:77,57,0,1 0/0:.:45:45:0:0%:25,20,0,0 -Example1_ref 9827 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:45:45:0:0%:26,19,0,0 -Example1_ref 9828 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=2.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:71,57,0,0 0/0:.:48:47:1:2.08%:26,21,1,0 -Example1_ref 9829 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 9830 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=7.3295E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:73,55,0,1 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 9831 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:72,59,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 9832 . A AC . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=7.2678E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:73,59,1,0 0/0:.:50:50:0:0%:27,23,0,0 -Example1_ref 9833 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:73,60,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 9834 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:74,60,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 9835 . GT G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=2.6519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:71,62,0,0 0/0:.:48:47:1:2.08%:26,21,0,1 -Example1_ref 9836 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:48:47:0:0%:26,21,0,0 -Example1_ref 9837 . G . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:74,63,0,0 0/0:.:46:46:0:0%:27,19,0,0 -Example1_ref 9838 . G A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=7.4176E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:134:1:0.74%:73,61,0,1 0/0:.:47:47:0:0%:27,20,0,0 -Example1_ref 9839 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:74,63,0,0 0/0:.:45:45:0:0%:27,18,0,0 -Example1_ref 9840 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:45:45:0:0%:27,18,0,0 -Example1_ref 9841 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:72,62,0,0 0/0:.:47:47:0:0%:27,20,0,0 -Example1_ref 9842 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:77,62,0,0 0/0:.:47:47:0:0%:27,20,0,0 -Example1_ref 9843 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:77,64,0,0 0/0:.:46:46:0:0%:27,19,0,0 -Example1_ref 9844 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:76,65,0,0 0/0:.:47:47:0:0%:27,20,0,0 -Example1_ref 9845 . G . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:76,65,0,0 0/0:.:46:46:0:0%:27,19,0,0 -Example1_ref 9846 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:0:0%:78,64,0,0 0/0:.:46:46:0:0%:27,19,0,0 -Example1_ref 9847 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:81,66,0,0 0/0:.:47:47:0:0%:28,19,0,0 -Example1_ref 9848 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:79,67,0,0 0/0:.:49:49:0:0%:29,20,0,0 -Example1_ref 9849 . C T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=2.551E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:80,66,0,0 0/0:.:50:49:1:2%:30,19,0,1 -Example1_ref 9850 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:82,67,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 9851 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:89,65,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 9852 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:90,65,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 9853 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:92,66,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 9854 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:49:49:0:0%:31,18,0,0 -Example1_ref 9855 . C . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:90,66,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 9856 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:91,62,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 9857 . G . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:90,62,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 9858 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:94,66,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 9859 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:95,64,0,0 0/0:.:52:52:0:0%:33,19,0,0 -Example1_ref 9860 . C . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:94,63,0,0 0/0:.:50:50:0:0%:31,19,0,0 -Example1_ref 9861 . A T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=2.5714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:95,61,0,0 0/0:.:54:53:1:1.85%:33,20,0,1 -Example1_ref 9862 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:95,62,0,0 0/0:.:52:52:0:0%:33,19,0,0 -Example1_ref 9863 . G GCA . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=7.4057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:94,62,0,1 0/0:.:55:55:0:0%:34,21,0,0 -Example1_ref 9864 . C . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:94,60,0,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 9865 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:92,62,0,0 0/0:.:55:55:0:0%:34,21,0,0 -Example1_ref 9866 . C A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=2.5962E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:94,60,0,0 0/0:.:54:53:1:1.85%:35,18,0,1 -Example1_ref 9867 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:94,64,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 9868 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:93,65,0,0 0/0:.:53:53:0:0%:34,19,0,0 -Example1_ref 9869 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:58:58:0:0%:35,23,0,0 -Example1_ref 9870 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:93,66,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 9871 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:96,66,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 9872 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:97,67,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 9873 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:56:56:0:0%:34,22,0,0 -Example1_ref 9874 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:97,66,0,0 0/0:.:57:57:0:0%:35,22,0,0 -Example1_ref 9875 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:59:59:0:0%:36,23,0,0 -Example1_ref 9876 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:99,66,0,0 0/0:.:59:59:0:0%:36,23,0,0 -Example1_ref 9877 . CA C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=7.4545E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:163:1:0.61%:98,65,1,0 0/0:.:56:56:0:0%:34,22,0,0 -Example1_ref 9878 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:100,72,0,0 0/0:.:59:59:0:0%:33,26,0,0 -Example1_ref 9879 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:98,72,0,0 0/0:.:61:61:0:0%:36,25,0,0 -Example1_ref 9880 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:96,72,0,0 0/0:.:60:60:0:0%:34,26,0,0 -Example1_ref 9881 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:95,70,0,0 0/0:.:60:60:0:0%:33,27,0,0 -Example1_ref 9882 . A AGCTC . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=7.2768E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:92,70,1,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 9883 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:93,74,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 9884 . G . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:91,73,0,0 0/0:.:61:61:0:0%:34,27,0,0 -Example1_ref 9885 . C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:90,75,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 9886 . T C . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=5.339E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:164:2:1.2%:92,72,1,1 0/0:.:61:61:0:0%:36,25,0,0 -Example1_ref 9887 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:92,76,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 9888 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:92,77,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 9889 . C . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:61:61:0:0%:36,25,0,0 -Example1_ref 9890 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:59:59:0:0%:34,25,0,0 -Example1_ref 9891 . G T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=2.7193E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:89,77,0,0 0/0:.:62:61:1:1.61%:34,27,1,0 -Example1_ref 9892 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:91,78,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 9893 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:93,76,0,0 0/0:.:62:62:0:0%:37,25,0,0 -Example1_ref 9894 . C A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.3478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:92,76,1,0 0/0:.:61:61:0:0%:36,25,0,0 -Example1_ref 9895 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:0:0%:92,77,0,0 0/0:.:63:63:0:0%:36,27,0,0 -Example1_ref 9896 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:91,86,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 9897 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:92,87,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 9898 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:93,85,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 9899 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:93,86,0,0 0/0:.:61:60:0:0%:34,26,0,0 -Example1_ref 9900 . C . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:0:0%:95,83,0,0 0/0:.:62:62:0:0%:35,27,0,0 -Example1_ref 9901 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:94,84,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 9902 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:93,84,0,0 0/0:.:64:64:0:0%:35,29,0,0 -Example1_ref 9903 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:95,84,0,0 0/0:.:63:63:0:0%:36,27,0,0 -Example1_ref 9904 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:94,88,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 9905 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:96,88,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 9906 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:97,89,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 9907 . A G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=7.44E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:96,89,1,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 9908 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:0:0%:94,88,0,0 0/0:.:64:64:0:0%:37,27,0,0 -Example1_ref 9909 . C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:0:0%:99,85,0,0 0/0:.:63:63:0:0%:34,29,0,0 -Example1_ref 9910 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:101,84,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 9911 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:98,87,0,0 0/0:.:66:66:0:0%:38,28,0,0 -Example1_ref 9912 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:99,87,0,0 0/0:.:66:66:0:0%:37,29,0,0 -Example1_ref 9913 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:98,87,0,0 0/0:.:64:64:0:0%:36,28,0,0 -Example1_ref 9914 . G . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:98,86,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 9915 . A . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:99,85,0,0 0/0:.:66:65:0:0%:36,29,0,0 -Example1_ref 9916 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:97,84,0,0 0/0:.:63:63:0:0%:36,27,0,0 -Example1_ref 9917 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:96,83,0,0 0/0:.:63:63:0:0%:37,26,0,0 -Example1_ref 9918 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:96,84,0,0 0/0:.:61:61:0:0%:35,26,0,0 -Example1_ref 9919 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:98,82,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 9920 . G . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:97,82,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 9921 . C . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:100,83,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 9922 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:99,83,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 9923 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:98,83,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 9924 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:101,85,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 9925 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:98,84,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 9926 . G A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=7.5417E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:180:1:0.55%:96,84,1,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 9927 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:94,85,0,0 0/0:.:61:61:0:0%:37,24,0,0 -Example1_ref 9928 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:97,87,0,0 0/0:.:60:60:0:0%:37,23,0,0 -Example1_ref 9929 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:100,88,0,0 0/0:.:61:61:0:0%:37,24,0,0 -Example1_ref 9930 . AT A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=7.5304E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:98,87,1,0 0/0:.:61:61:0:0%:37,24,0,0 -Example1_ref 9931 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:101,86,0,0 0/0:.:60:60:0:0%:38,22,0,0 -Example1_ref 9932 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:106,87,0,0 0/0:.:62:62:0:0%:38,24,0,0 -Example1_ref 9933 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:107,88,0,0 0/0:.:63:63:0:0%:38,25,0,0 -Example1_ref 9934 . C . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:105,84,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 9935 . C . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:101,87,0,0 0/0:.:61:61:0:0%:36,25,0,0 -Example1_ref 9936 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:105,95,0,0 0/0:.:62:62:0:0%:36,26,0,0 -Example1_ref 9937 . G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:102,96,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9938 . A AGACAG . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=7.5676E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:99,96,0,1 0/0:.:63:63:0:0%:37,26,0,0 -Example1_ref 9939 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:108,90,0,0 0/0:.:63:63:0:0%:37,26,0,0 -Example1_ref 9940 . C T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=7.6604E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:106,96,1,0 0/0:.:62:62:0:0%:38,24,0,0 -Example1_ref 9941 . T . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:107,92,0,0 0/0:.:64:64:0:0%:39,25,0,0 -Example1_ref 9942 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:108,93,0,0 0/0:.:63:63:0:0%:38,25,0,0 -Example1_ref 9943 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:105,96,0,0 0/0:.:64:64:0:0%:39,25,0,0 -Example1_ref 9944 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:109,96,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9945 . T TAAGAGAC . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=7.6208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:110,94,0,1 0/0:.:64:64:0:0%:39,25,0,0 -Example1_ref 9946 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:109,93,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9947 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:107,92,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9948 . G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:106,90,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 9949 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:109,92,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9950 . A ACTGTC . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=7.5746E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:202:1:0.49%:108,94,1,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 9951 . T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:111,94,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 9952 . A C . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=7.603E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:108,94,1,0 0/0:.:64:64:0:0%:38,26,0,0 -Example1_ref 9953 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:110,94,0,0 0/0:.:67:67:0:0%:41,26,0,0 -Example1_ref 9954 . A G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=2.4723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:109,95,0,0 0/0:.:67:66:1:1.49%:40,26,1,0 -Example1_ref 9955 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:104,95,0,0 0/0:.:65:65:0:0%:40,25,0,0 -Example1_ref 9956 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:108,93,0,0 0/0:.:63:63:0:0%:40,23,0,0 -Example1_ref 9957 . T . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:64:64:0:0%:38,26,0,0 -Example1_ref 9958 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:107,94,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 9959 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 9960 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:106,94,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 9961 . T A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=2.4335E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:106,93,0,0 0/0:.:64:63:1:1.56%:39,24,0,1 -Example1_ref 9962 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:106,94,0,0 0/0:.:65:65:0:0%:40,25,0,0 -Example1_ref 9963 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:104,94,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 9964 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:105,94,0,0 0/0:.:68:68:0:0%:41,27,0,0 -Example1_ref 9965 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:105,93,0,0 0/0:.:66:66:0:0%:41,25,0,0 -Example1_ref 9966 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:103,90,0,0 0/0:.:67:67:0:0%:41,26,0,0 -Example1_ref 9967 . C T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=2.4809E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:103,94,0,0 0/0:.:65:64:1:1.54%:37,27,1,0 -Example1_ref 9968 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:104,95,0,0 0/0:.:68:68:0:0%:41,27,0,0 -Example1_ref 9969 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:103,94,0,0 0/0:.:69:69:0:0%:42,27,0,0 -Example1_ref 9970 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:105,102,0,0 0/0:.:71:71:0:0%:42,29,0,0 -Example1_ref 9971 . G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:98,102,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 9972 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 9973 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:102,100,0,0 0/0:.:72:72:0:0%:43,29,0,0 -Example1_ref 9974 . C A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=7.4265E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:104,97,0,1 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 9975 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:71:70:0:0%:39,31,0,0 -Example1_ref 9976 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:102,102,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 9977 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:106,99,0,0 0/0:.:73:73:0:0%:43,30,0,0 -Example1_ref 9978 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:106,104,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 9979 . G . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:106,104,0,0 0/0:.:74:74:0:0%:44,30,0,0 -Example1_ref 9980 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:106,107,0,0 0/0:.:77:77:0:0%:45,32,0,0 -Example1_ref 9981 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:108,108,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 9982 . A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:108,107,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 9983 . G A . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=7.3611E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:104,107,0,1 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 9984 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:105,108,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 9985 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:108,107,0,0 0/0:.:75:75:0:0%:41,34,0,0 -Example1_ref 9986 . G T . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=7.4552E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:103,104,0,1 0/0:.:71:71:0:0%:40,31,0,0 -Example1_ref 9987 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:105,105,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 9988 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:103,100,0,0 0/0:.:75:75:0:0%:41,34,0,0 -Example1_ref 9989 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:78:78:0:0%:43,35,0,0 -Example1_ref 9990 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:101,104,0,0 0/0:.:77:77:0:0%:42,35,0,0 -Example1_ref 9991 . T G . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=2.7273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:104,104,0,0 0/0:.:78:77:1:1.28%:44,33,0,1 -Example1_ref 9992 . T C . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=7.2242E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:101,101,1,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 9993 . T . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:100,103,0,0 0/0:.:78:78:0:0%:45,33,0,0 -Example1_ref 9994 . G T . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=2.7562E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:102,103,0,0 0/0:.:78:77:1:1.28%:43,34,1,0 -Example1_ref 9995 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:101,103,0,0 0/0:.:80:80:0:0%:46,34,0,0 -Example1_ref 9996 . C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:101,102,0,0 0/0:.:75:75:0:0%:42,33,0,0 -Example1_ref 9997 . A . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:102,98,0,0 0/0:.:78:78:0:0%:45,33,0,0 -Example1_ref 9998 . A ACTG . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=7.276E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:202:1:0.49%:103,99,1,0 0/0:.:76:76:0:0%:44,32,0,0 -Example1_ref 9999 . T . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:100,96,0,0 0/0:.:73:73:0:0%:41,32,0,0 -Example1_ref 10000 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:92,98,0,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 10001 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:95,99,0,0 0/0:.:70:70:0:0%:38,32,0,0 -Example1_ref 10002 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:96,100,0,0 0/0:.:70:70:0:0%:37,33,0,0 -Example1_ref 10003 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:96,101,0,0 0/0:.:69:69:0:0%:36,33,0,0 -Example1_ref 10004 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:96,101,0,0 0/0:.:69:69:0:0%:36,33,0,0 -Example1_ref 10005 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:95,101,0,0 0/0:.:70:70:0:0%:37,33,0,0 -Example1_ref 10006 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:91,101,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 10007 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:89,97,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 10008 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:90,97,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 10009 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 10010 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:99,100,0,0 0/0:.:66:66:0:0%:35,31,0,0 -Example1_ref 10011 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:97,99,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 10012 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:98,99,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 10013 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:96,100,0,0 0/0:.:70:70:0:0%:38,32,0,0 -Example1_ref 10014 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:197:0:0%:97,100,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 10015 . A . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:92,101,0,0 0/0:.:69:69:0:0%:37,32,0,0 -Example1_ref 10016 . G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:99,100,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 10017 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:97,102,0,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 10018 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:100,100,0,0 0/0:.:68:68:0:0%:37,31,0,0 -Example1_ref 10019 . T . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:96,98,0,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 10020 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:94,96,0,0 0/0:.:63:63:0:0%:35,28,0,0 -Example1_ref 10021 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:94,98,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 10022 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:92,97,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 10023 . C A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=7.4031E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:190:1:0.52%:91,99,1,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 10024 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:94,90,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 10025 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:93,94,0,0 0/0:.:64:64:0:0%:33,31,0,0 -Example1_ref 10026 . CA C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=7.4E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:89,95,1,0 0/0:.:65:65:0:0%:36,29,0,0 -Example1_ref 10027 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:91,95,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 10028 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:63:63:0:0%:33,30,0,0 -Example1_ref 10029 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:92,95,0,0 0/0:.:65:65:0:0%:35,30,0,0 -Example1_ref 10030 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:91,96,0,0 0/0:.:66:66:0:0%:36,30,0,0 -Example1_ref 10031 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:93,96,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 10032 . A . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:92,94,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 10033 . A . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:91,97,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 10034 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:93,97,0,0 0/0:.:68:68:0:0%:36,32,0,0 -Example1_ref 10035 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:90,95,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 10036 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:91,93,0,0 0/0:.:67:67:0:0%:36,31,0,0 -Example1_ref 10037 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:88,96,0,0 0/0:.:64:64:0:0%:34,30,0,0 -Example1_ref 10038 . A . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:85,97,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 10039 . C . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:92,96,0,0 0/0:.:64:64:0:0%:33,31,0,0 -Example1_ref 10040 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:91,95,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 10041 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:83,95,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 10042 . G . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:76,93,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 10043 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:77,95,0,0 0/0:.:58:58:0:0%:27,31,0,0 -Example1_ref 10044 . A . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:76,97,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 10045 . C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:81,95,0,0 0/0:.:63:63:0:0%:31,32,0,0 -Example1_ref 10046 . A . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:63:63:0:0%:32,31,0,0 -Example1_ref 10047 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:79,97,0,0 0/0:.:62:62:0:0%:31,31,0,0 -Example1_ref 10048 . C . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:79,98,0,0 0/0:.:61:61:0:0%:30,31,0,0 -Example1_ref 10049 . G . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:83,96,0,0 0/0:.:62:62:0:0%:30,32,0,0 -Example1_ref 10050 . T C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=7.4477E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:83,94,0,1 0/0:.:61:61:0:0%:30,31,0,0 -Example1_ref 10051 . T . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:83,96,0,0 0/0:.:60:60:0:0%:29,31,0,0 -Example1_ref 10052 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:82,97,0,0 0/0:.:59:59:0:0%:29,30,0,0 -Example1_ref 10053 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:82,98,0,0 0/0:.:59:59:0:0%:28,31,0,0 -Example1_ref 10054 . T TC . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=7.4895E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:82,96,1,0 0/0:.:60:60:0:0%:29,31,0,0 -Example1_ref 10055 . C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:79,97,0,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 10056 . C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:79,96,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 10057 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:54:54:0:0%:27,27,0,0 -Example1_ref 10058 . G A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.5556E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:169:1:0.59%:78,91,0,1 0/0:.:55:55:0:0%:28,27,0,0 -Example1_ref 10059 . C A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=7.6106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:171:1:0.58%:79,92,0,1 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 10060 . A C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=7.4459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:77,94,1,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 10061 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:78,95,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 10062 . C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:79,94,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 10063 . T A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=5.5174E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:166:2:1.19%:77,89,2,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 10064 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:78,90,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 10065 . A G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.5225E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:77,89,0,1 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10066 . T G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:77,88,0,1 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10067 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:76,84,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 10068 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:77,87,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 10069 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:77,87,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10070 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:76,87,0,0 0/0:.:55:54:0:0%:30,24,0,0 -Example1_ref 10071 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:74,82,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10072 . G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:81,85,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 10073 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:82,84,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 10074 . A G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=7.4324E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:164:1:0.61%:80,84,1,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 10075 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:81,82,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 10076 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:82,82,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 10077 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:90,85,0,0 0/0:.:55:55:0:0%:33,22,0,0 -Example1_ref 10078 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:90,85,0,0 0/0:.:56:56:0:0%:34,22,0,0 -Example1_ref 10079 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:89,85,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 10080 . C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:91,81,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10081 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10082 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:91,85,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10083 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:90,86,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10084 . T TAAGAGACA . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=7.7193E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:91,84,0,1 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10085 . G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:89,87,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 10086 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:91,77,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10087 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:94,77,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10088 . T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:93,76,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10089 . C . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:92,75,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 10090 . C . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:91,76,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 10091 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:91,76,0,0 0/0:.:50:50:0:0%:31,19,0,0 -Example1_ref 10092 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:92,76,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 10093 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:92,76,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 10094 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:91,76,0,0 0/0:.:47:47:0:0%:29,18,0,0 -Example1_ref 10095 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:90,77,0,0 0/0:.:50:50:0:0%:31,19,0,0 -Example1_ref 10096 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:90,76,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 10097 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:88,76,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 10098 . C A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=7.6303E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:87,73,0,1 0/0:.:50:50:0:0%:31,19,0,0 -Example1_ref 10099 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10100 . C . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:86,77,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 10101 . G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 10102 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:85,76,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 10103 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:81,77,0,0 0/0:.:48:48:0:0%:28,20,0,0 -Example1_ref 10104 . G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:83,77,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10105 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 10106 . T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:87,82,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10107 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10108 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:83,82,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10109 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:84,82,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10110 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:86,84,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10111 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:85,83,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10112 . G C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=7.5799E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:81,84,1,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10113 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:85,80,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 10114 . A G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=7.5115E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:162:1:0.61%:83,79,1,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10115 . G T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=7.5113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:1:0.6%:84,81,1,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10116 . T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:86,80,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10117 . A ACTGTCT . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=7.6623E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:93,83,1,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10118 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:92,80,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10119 . T G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=2.3894E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:92,80,0,0 0/0:.:54:53:1:1.85%:32,21,0,1 -Example1_ref 10120 . T C . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=7.5546E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:172:1:0.58%:93,79,0,1 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 10121 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:92,80,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10122 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:90,79,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10123 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:87,80,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10124 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:87,77,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 10125 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:85,79,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10126 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:88,71,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10127 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10128 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:87,69,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10129 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 10130 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:84,69,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 10131 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:82,70,0,0 0/0:.:55:55:0:0%:33,22,0,0 -Example1_ref 10132 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:84,72,0,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 10133 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:59:59:0:0%:33,26,0,0 -Example1_ref 10134 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:59:59:0:0%:33,26,0,0 -Example1_ref 10135 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:85,77,0,0 0/0:.:59:59:0:0%:33,26,0,0 -Example1_ref 10136 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:84,74,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10137 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:84,77,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 10138 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:81,74,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10139 . G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:83,73,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10140 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:84,73,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10141 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:83,72,0,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 10142 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:82,73,0,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 10143 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:77,70,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 10144 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10145 . C A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.4038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:84,69,1,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10146 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10147 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10148 . C CT . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=2.5352E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:88,71,0,0 0/0:.:54:53:1:1.85%:30,23,1,0 -Example1_ref 10149 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:87,68,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 10150 . G A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=7.4762E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:87,69,0,1 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10151 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 10152 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10153 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:90,70,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10154 . T C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.4884E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:160:1:0.62%:89,71,1,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 10155 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:88,72,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10156 . G . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:95,67,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 10157 . G . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:89,70,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 10158 . A ACTGTCTC . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=7.4766E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:89,70,1,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 10159 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:91,69,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10160 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:93,64,0,0 0/0:.:51:51:0:0%:29,22,0,0 -Example1_ref 10161 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:96,65,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10162 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:97,65,0,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 10163 . G . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:95,66,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10164 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:97,64,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10165 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:95,63,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10166 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10167 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:94,71,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10168 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:96,71,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 10169 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:97,69,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10170 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:95,67,0,0 0/0:.:49:49:0:0%:30,19,0,0 -Example1_ref 10171 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:97,68,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 10172 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:96,66,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 10173 . G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:90,67,0,0 0/0:.:46:46:0:0%:29,17,0,0 -Example1_ref 10174 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:92,67,0,0 0/0:.:46:46:0:0%:29,17,0,0 -Example1_ref 10175 . G A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=2.3188E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:48:47:1:2.08%:29,18,0,1 -Example1_ref 10176 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:90,68,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 10177 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:93,67,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 10178 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:48:48:0:0%:29,19,0,0 -Example1_ref 10179 . G . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:97,68,0,0 0/0:.:49:49:0:0%:30,19,0,0 -Example1_ref 10180 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:92,66,0,0 0/0:.:49:49:0:0%:29,20,0,0 -Example1_ref 10181 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:49:49:0:0%:30,19,0,0 -Example1_ref 10182 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:96,68,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10183 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:97,70,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10184 . G . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:94,68,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 10185 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:92,72,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 10186 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:96,71,0,0 0/0:.:48:48:0:0%:30,18,0,0 -Example1_ref 10187 . G . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:92,71,0,0 0/0:.:50:49:0:0%:29,20,0,0 -Example1_ref 10188 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:90,69,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10189 . T A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=4.126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:93,64,1,0 0/0:.:48:47:1:2.08%:29,18,0,1 -Example1_ref 10190 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:93,61,0,0 0/0:.:47:47:0:0%:29,18,0,0 -Example1_ref 10191 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:92,69,0,0 0/0:.:49:49:0:0%:30,19,0,0 -Example1_ref 10192 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:94,69,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10193 . GA G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=7.7404E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:160:1:0.62%:92,68,1,0 0/0:.:47:47:0:0%:29,18,0,0 -Example1_ref 10194 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:89,71,0,0 0/0:.:51:51:0:0%:29,22,0,0 -Example1_ref 10195 . A AT . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=7.5576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:92,71,1,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10196 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:93,70,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 10197 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:91,68,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10198 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:90,67,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10199 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:87,68,0,0 0/0:.:51:51:0:0%:29,22,0,0 -Example1_ref 10200 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:85,68,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 10201 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:88,66,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 10202 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:87,67,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10203 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:88,65,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 10204 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:93,66,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 10205 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:0:0%:92,62,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 10206 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:85,64,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 10207 . TTA T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=7.3023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:156:1:0.64%:88,68,0,1 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 10208 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:87,71,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 10209 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 10210 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:87,73,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 10211 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:88,70,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 10212 . G . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:0:0%:89,72,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 10213 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:89,68,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 10214 . C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:87,67,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 10215 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:89,69,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 10216 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:87,69,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 10217 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:85,69,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 10218 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 10219 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:87,70,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 10220 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:86,69,0,0 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 10221 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:88,69,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10222 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:85,70,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 10223 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 10224 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:86,70,0,0 0/0:.:60:60:0:0%:32,28,0,0 -Example1_ref 10225 . G . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:84,67,0,0 0/0:.:57:57:0:0%:30,27,0,0 -Example1_ref 10226 . G T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=7.1921E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:75,70,1,0 0/0:.:58:57:0:0%:30,27,0,0 -Example1_ref 10227 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:84,78,0,0 0/0:.:62:61:0:0%:31,30,0,0 -Example1_ref 10228 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:87,79,0,0 0/0:.:64:63:0:0%:33,30,0,0 -Example1_ref 10229 . AT A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=7.2532E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:86,82,0,1 0/0:.:65:64:0:0%:33,31,0,0 -Example1_ref 10230 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:0:0%:85,78,0,0 0/0:.:64:64:0:0%:32,32,0,0 -Example1_ref 10231 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 10232 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:88,85,0,0 0/0:.:65:65:0:0%:33,32,0,0 -Example1_ref 10233 . A G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.2269E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:171:1:0.58%:88,83,0,1 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 10234 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:92,85,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 10235 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:93,84,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 10236 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:94,81,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 10237 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:0:0%:94,90,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 10238 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:88,89,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10239 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:94,90,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 10240 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:94,91,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10241 . G T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=7.251E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:93,88,1,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 10242 . G GTCTGTCTCT . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=7.251E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:181:1:0.55%:90,91,1,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 10243 . T TC . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=4.8653E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:90,89,1,0 0/0:.:71:70:1:1.41%:32,38,1,0 -Example1_ref 10244 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:91,86,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10245 . G . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:92,87,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 10246 . A T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.2764E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:178:1:0.56%:90,88,1,0 0/0:.:67:67:0:0%:29,38,0,0 -Example1_ref 10247 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:92,83,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10248 . T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:93,84,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 10249 . C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:92,84,0,0 0/0:.:63:63:0:0%:29,34,0,0 -Example1_ref 10250 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:94,83,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 10251 . T TA . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:92,83,1,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 10252 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:0:0%:89,85,0,0 0/0:.:65:65:0:0%:27,38,0,0 -Example1_ref 10253 . G T . PASS DP=241;SS=0;SSC=0;GPV=1E0;SPV=7.2614E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:90,84,1,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 10254 . C . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:87,84,0,0 0/0:.:65:65:0:0%:28,37,0,0 -Example1_ref 10255 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:92,86,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 10256 . A G . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.2951E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:177:1:0.56%:89,88,1,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 10257 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:88,92,0,0 0/0:.:67:67:0:0%:27,40,0,0 -Example1_ref 10258 . A T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=2.7572E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:85,91,0,0 0/0:.:67:66:1:1.49%:27,39,1,0 -Example1_ref 10259 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:89,94,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 10260 . T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:92,94,0,0 0/0:.:70:70:0:0%:28,42,0,0 -Example1_ref 10261 . G A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=7.2016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:80,94,1,0 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 10262 . A . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:79,94,0,0 0/0:.:69:69:0:0%:27,42,0,0 -Example1_ref 10263 . C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:82,92,0,0 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 10264 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:83,94,0,0 0/0:.:68:68:0:0%:26,42,0,0 -Example1_ref 10265 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:84,91,0,0 0/0:.:65:65:0:0%:26,39,0,0 -Example1_ref 10266 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:82,93,0,0 0/0:.:68:68:0:0%:26,42,0,0 -Example1_ref 10267 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:75,91,0,0 0/0:.:66:66:0:0%:25,41,0,0 -Example1_ref 10268 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:76,93,0,0 0/0:.:67:67:0:0%:25,42,0,0 -Example1_ref 10269 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:76,98,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 10270 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:73,96,0,0 0/0:.:67:67:0:0%:25,42,0,0 -Example1_ref 10271 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:73,95,0,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 10272 . T . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:76,98,0,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 10273 . G T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=7.1674E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:69,97,1,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 10274 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:72,95,0,0 0/0:.:66:66:0:0%:25,41,0,0 -Example1_ref 10275 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:71,95,0,0 0/0:.:64:64:0:0%:25,39,0,0 -Example1_ref 10276 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:74,90,0,0 0/0:.:69:69:0:0%:25,44,0,0 -Example1_ref 10277 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:70,94,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 10278 . C . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:72,94,0,0 0/0:.:65:65:0:0%:25,40,0,0 -Example1_ref 10279 . T . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:72,94,0,0 0/0:.:61:61:0:0%:23,38,0,0 -Example1_ref 10280 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:76,95,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 10281 . C CCTGTCTCTTAT . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=4.8708E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:73,88,1,0 0/0:.:64:63:1:1.56%:22,41,1,0 -Example1_ref 10282 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:73,96,0,0 0/0:.:66:66:0:0%:22,44,0,0 -Example1_ref 10283 . C A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=7.2532E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:74,94,1,0 0/0:.:64:64:0:0%:22,42,0,0 -Example1_ref 10284 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:74,95,0,0 0/0:.:65:65:0:0%:22,43,0,0 -Example1_ref 10285 . G A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.1983E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:72,94,1,0 0/0:.:65:65:0:0%:23,42,0,0 -Example1_ref 10286 . G . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:69,94,0,0 0/0:.:65:65:0:0%:22,43,0,0 -Example1_ref 10287 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:74,95,0,0 0/0:.:64:64:0:0%:22,42,0,0 -Example1_ref 10288 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:75,92,0,0 0/0:.:63:63:0:0%:20,43,0,0 -Example1_ref 10289 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:75,91,0,0 0/0:.:65:65:0:0%:23,42,0,0 -Example1_ref 10290 . T . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:74,93,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 10291 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:75,96,0,0 0/0:.:67:67:0:0%:24,43,0,0 -Example1_ref 10292 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:76,93,0,0 0/0:.:67:67:0:0%:24,43,0,0 -Example1_ref 10293 . C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:73,96,0,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 10294 . G . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:63:63:0:0%:22,41,0,0 -Example1_ref 10295 . G T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=7.13E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:66,92,1,0 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 10296 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:70,92,0,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 10297 . G T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=5.1388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:158:2:1.25%:66,92,2,0 0/0:.:63:63:0:0%:22,41,0,0 -Example1_ref 10298 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:72,93,0,0 0/0:.:65:65:0:0%:23,42,0,0 -Example1_ref 10299 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:75,88,0,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 10300 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:165:0:0%:74,91,0,0 0/0:.:68:68:0:0%:25,43,0,0 -Example1_ref 10301 . C . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:76,89,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 10302 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:75,90,0,0 0/0:.:63:63:0:0%:23,40,0,0 -Example1_ref 10303 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:74,92,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 10304 . C . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:73,89,0,0 0/0:.:64:64:0:0%:22,42,0,0 -Example1_ref 10305 . T A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=2.7556E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:73,90,0,0 0/0:.:62:61:1:1.61%:23,38,0,1 -Example1_ref 10306 . T A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=7.2247E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:73,90,1,0 0/0:.:63:63:0:0%:20,43,0,0 -Example1_ref 10307 . G . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:62,92,0,0 0/0:.:65:65:0:0%:22,43,0,0 -Example1_ref 10308 . C . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:64,93,0,0 0/0:.:66:66:0:0%:23,43,0,0 -Example1_ref 10309 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:64:64:0:0%:21,43,0,0 -Example1_ref 10310 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:60,96,0,0 0/0:.:63:63:0:0%:21,42,0,0 -Example1_ref 10311 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:64,96,0,0 0/0:.:61:61:0:0%:20,41,0,0 -Example1_ref 10312 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:64,93,0,0 0/0:.:61:61:0:0%:22,39,0,0 -Example1_ref 10313 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 10314 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:65,96,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 10315 . T . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:65,96,0,0 0/0:.:66:66:0:0%:25,41,0,0 -Example1_ref 10316 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:65,97,0,0 0/0:.:65:65:0:0%:24,41,0,0 -Example1_ref 10317 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:64,94,0,0 0/0:.:61:61:0:0%:21,40,0,0 -Example1_ref 10318 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:67,97,0,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 10319 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:62,96,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 10320 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:59,96,0,0 0/0:.:62:62:0:0%:21,41,0,0 -Example1_ref 10321 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 10322 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:61:60:0:0%:21,39,0,0 -Example1_ref 10323 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:62,83,0,0 0/0:.:60:60:0:0%:22,38,0,0 -Example1_ref 10324 . A C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=2.8365E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:64,85,0,0 0/0:.:59:58:1:1.69%:20,38,1,0 -Example1_ref 10325 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:63,80,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 10326 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:58:58:0:0%:21,37,0,0 -Example1_ref 10327 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:61,82,0,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 10328 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:63,85,0,0 0/0:.:59:59:0:0%:22,37,0,0 -Example1_ref 10329 . T C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:64,84,0,1 0/0:.:57:57:0:0%:21,36,0,0 -Example1_ref 10330 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:59:59:0:0%:22,37,0,0 -Example1_ref 10331 . C A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=2.8141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:59,84,0,0 0/0:.:56:55:1:1.79%:20,35,1,0 -Example1_ref 10332 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:63,87,0,0 0/0:.:60:60:0:0%:22,38,0,0 -Example1_ref 10333 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:60:60:0:0%:22,38,0,0 -Example1_ref 10334 . G . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:59:59:0:0%:22,37,0,0 -Example1_ref 10335 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:60,86,0,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 10336 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:59:59:0:0%:21,38,0,0 -Example1_ref 10337 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:59,86,0,0 0/0:.:59:59:0:0%:21,38,0,0 -Example1_ref 10338 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:60,86,0,0 0/0:.:57:57:0:0%:19,38,0,0 -Example1_ref 10339 . T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:57:57:0:0%:21,36,0,0 -Example1_ref 10340 . G A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=8.773E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:54,85,0,0 0/0:.:59:57:2:3.39%:21,36,0,2 -Example1_ref 10341 . G T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=2.8866E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:54,84,0,0 0/0:.:56:55:1:1.79%:19,36,1,0 -Example1_ref 10342 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:48,83,0,0 0/0:.:58:58:0:0%:20,38,0,0 -Example1_ref 10343 . A ACTGTC . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=6.4874E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:138:2:1.43%:53,85,2,0 0/0:.:58:57:1:1.72%:19,38,1,0 -Example1_ref 10344 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:55,83,0,0 0/0:.:53:53:0:0%:16,37,0,0 -Example1_ref 10345 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:55,82,0,0 0/0:.:55:55:0:0%:19,36,0,0 -Example1_ref 10346 . G GCTT . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=7.1204E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:52,83,1,0 0/0:.:55:55:0:0%:18,37,0,0 -Example1_ref 10347 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:53,84,0,0 0/0:.:58:58:0:0%:21,37,0,0 -Example1_ref 10348 . G . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:52,84,0,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 10349 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:53,83,0,0 0/0:.:58:58:0:0%:21,37,0,0 -Example1_ref 10350 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:52,82,0,0 0/0:.:57:57:0:0%:20,37,0,0 -Example1_ref 10351 . G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:45,81,0,0 0/0:.:53:53:0:0%:17,36,0,0 -Example1_ref 10352 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:49,79,0,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 10353 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:47,82,0,0 0/0:.:52:52:0:0%:16,36,0,0 -Example1_ref 10354 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:0:0%:47,80,0,0 0/0:.:53:53:0:0%:19,34,0,0 -Example1_ref 10355 . G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:130:0:0%:48,82,0,0 0/0:.:53:53:0:0%:19,34,0,0 -Example1_ref 10356 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:47,72,0,0 0/0:.:55:55:0:0%:21,34,0,0 -Example1_ref 10357 . G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:123:0:0%:50,73,0,0 0/0:.:55:55:0:0%:20,35,0,0 -Example1_ref 10358 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:52,75,0,0 0/0:.:56:56:0:0%:21,35,0,0 -Example1_ref 10359 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:51,71,0,0 0/0:.:55:55:0:0%:22,33,0,0 -Example1_ref 10360 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:50,73,0,0 0/0:.:54:54:0:0%:19,35,0,0 -Example1_ref 10361 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:52,72,0,0 0/0:.:54:54:0:0%:20,34,0,0 -Example1_ref 10362 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:58:58:0:0%:22,36,0,0 -Example1_ref 10363 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:52,77,0,0 0/0:.:58:58:0:0%:22,36,0,0 -Example1_ref 10364 . T TCTG . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=6.9613E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:50,75,1,0 0/0:.:55:55:0:0%:20,35,0,0 -Example1_ref 10365 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:51,75,0,0 0/0:.:58:58:0:0%:22,36,0,0 -Example1_ref 10366 . A T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=6.8394E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:54,77,1,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 10367 . C . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:54,75,0,0 0/0:.:64:62:0:0%:26,36,0,0 -Example1_ref 10368 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:63:61:0:0%:25,36,0,0 -Example1_ref 10369 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:63:61:0:0%:23,38,0,0 -Example1_ref 10370 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:53,76,0,0 0/0:.:63:63:0:0%:25,38,0,0 -Example1_ref 10371 . A T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=6.7196E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:54,72,0,1 0/0:.:62:62:0:0%:24,38,0,0 -Example1_ref 10372 . G GAGAC . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=3.0313E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:52,76,0,0 0/0:.:59:56:3:5.08%:23,33,0,3 -Example1_ref 10373 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:53,76,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10374 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:55,77,0,0 0/0:.:58:58:0:0%:23,35,0,0 -Example1_ref 10375 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:57,73,0,0 0/0:.:60:60:0:0%:24,36,0,0 -Example1_ref 10376 . T . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:57,70,0,0 0/0:.:60:60:0:0%:23,37,0,0 -Example1_ref 10377 . T A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=6.8254E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:57,71,0,1 0/0:.:60:60:0:0%:22,38,0,0 -Example1_ref 10378 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:56,73,0,0 0/0:.:63:63:0:0%:24,39,0,0 -Example1_ref 10379 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:56,73,0,0 0/0:.:63:63:0:0%:24,39,0,0 -Example1_ref 10380 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:55,75,0,0 0/0:.:62:62:0:0%:24,38,0,0 -Example1_ref 10381 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:54,71,0,0 0/0:.:60:60:0:0%:21,39,0,0 -Example1_ref 10382 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:54,74,0,0 0/0:.:62:62:0:0%:22,40,0,0 -Example1_ref 10383 . C . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 10384 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:56,71,0,0 0/0:.:61:61:0:0%:23,38,0,0 -Example1_ref 10385 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:61:61:0:0%:22,39,0,0 -Example1_ref 10386 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:57,69,0,0 0/0:.:60:60:0:0%:22,38,0,0 -Example1_ref 10387 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:60,72,0,0 0/0:.:63:63:0:0%:24,39,0,0 -Example1_ref 10388 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:61:61:0:0%:24,37,0,0 -Example1_ref 10389 . C A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=6.7539E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:61,67,0,1 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 10390 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:62,71,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 10391 . A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:63,71,0,0 0/0:.:64:64:0:0%:25,39,0,0 -Example1_ref 10392 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:63,68,0,0 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 10393 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:61,71,0,0 0/0:.:63:63:0:0%:25,38,0,0 -Example1_ref 10394 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:56,65,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10395 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:57,66,0,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 10396 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:58,65,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10397 . G T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=3.2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:54,65,0,0 0/0:.:56:55:1:1.79%:23,32,1,0 -Example1_ref 10398 . G T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=3.0899E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:58,65,0,0 0/0:.:55:54:1:1.82%:23,31,1,0 -Example1_ref 10399 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:59,63,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 10400 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:55,63,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 10401 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:60,60,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 10402 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:58,60,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 10403 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:56,59,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10404 . C . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 10405 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:58,62,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10406 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:58,58,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 10407 . G A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=3.2184E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:58,60,0,0 0/0:.:56:55:1:1.79%:24,31,0,1 -Example1_ref 10408 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:68,60,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 10409 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:67,62,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10410 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 10411 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:75,59,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 10412 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:75,63,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 10413 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:73,62,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 10414 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:75,60,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 10415 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:74,62,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 10416 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:74,61,0,0 0/0:.:64:64:0:0%:29,35,0,0 -Example1_ref 10417 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:74,51,0,0 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 10418 . G GC . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=6.9061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:73,51,1,0 0/0:.:56:56:0:0%:28,28,0,0 -Example1_ref 10419 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:74,47,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 10420 . G GTCTCT . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=6.7956E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:122:1:0.81%:76,46,1,0 0/0:.:58:58:0:0%:29,29,0,0 -Example1_ref 10421 . T C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=6.7742E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:76,49,1,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 10422 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:77,49,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 10423 . C . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:75,43,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 10424 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:75,49,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 10425 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 10426 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:72,48,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 10427 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 10428 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:71,43,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 10429 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:72,42,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 10430 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:50:50:0:0%:29,21,0,0 -Example1_ref 10431 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:71,43,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 10432 . T . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 10433 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:72,40,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 10434 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:72,39,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 10435 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:70,40,0,0 0/0:.:55:55:0:0%:29,26,0,0 -Example1_ref 10436 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 10437 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:68,42,0,0 0/0:.:57:57:0:0%:30,27,0,0 -Example1_ref 10438 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 10439 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:70,45,0,0 0/0:.:54:54:0:0%:28,26,0,0 -Example1_ref 10440 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10441 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 10442 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:72,46,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10443 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:73,48,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 10444 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:72,50,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 10445 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:73,50,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 10446 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:72,49,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 10447 . T C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=3.2558E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:71,45,0,0 0/0:.:56:55:1:1.79%:31,24,1,0 -Example1_ref 10448 . G T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=3.2749E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:70,45,0,0 0/0:.:56:55:1:1.79%:31,24,1,0 -Example1_ref 10449 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:69,44,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10450 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:72,41,0,0 0/0:.:51:51:0:0%:31,20,0,0 -Example1_ref 10451 . C . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:72,43,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10452 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:71,41,0,0 0/0:.:51:51:0:0%:30,21,0,0 -Example1_ref 10453 . T . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:72,44,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10454 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:0:0%:71,43,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 10455 . A . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:71,43,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 10456 . A . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:69,43,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 10457 . A ACCTGTCT . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=6.7647E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:114:1:0.87%:71,43,1,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 10458 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:74,43,0,0 0/0:.:54:54:0:0%:30,24,0,0 -Example1_ref 10459 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:75,39,0,0 0/0:.:50:50:0:0%:30,20,0,0 -Example1_ref 10460 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:75,39,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 10461 . A T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=6.7879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:111:1:0.89%:73,38,1,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10462 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:77,38,0,0 0/0:.:49:49:0:0%:29,20,0,0 -Example1_ref 10463 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:76,40,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 10464 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:76,40,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10465 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:76,40,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10466 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:77,41,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 10467 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:76,42,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 10468 . A . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:76,39,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 10469 . A G . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=3.0994E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:77,41,0,0 0/0:.:53:52:1:1.89%:30,22,0,1 -Example1_ref 10470 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:78,42,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10471 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:77,41,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 10472 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:76,41,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10473 . G . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:75,40,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10474 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:77,40,0,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10475 . A T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=6.9186E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:118:1:0.84%:77,41,1,0 0/0:.:53:53:0:0%:30,23,0,0 -Example1_ref 10476 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:83,42,0,0 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 10477 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:84,42,0,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 10478 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:85,40,0,0 0/0:.:55:55:0:0%:33,22,0,0 -Example1_ref 10479 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:86,41,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 10480 . T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:88,39,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 10481 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:93,39,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 10482 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:91,39,0,0 0/0:.:59:59:0:0%:34,25,0,0 -Example1_ref 10483 . T A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=6.9474E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:92,39,1,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 10484 . T A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=7E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:92,40,1,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 10485 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 10486 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:94,43,0,0 0/0:.:57:57:0:0%:34,23,0,0 -Example1_ref 10487 . T G . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=2.9319E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:56:55:1:1.79%:33,22,1,0 -Example1_ref 10488 . C CCCTGT . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=2.766E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:94,42,0,0 0/0:.:52:51:1:1.92%:31,20,1,0 -Example1_ref 10489 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 10490 . T G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=7.1958E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:93,42,1,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 10491 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:93,42,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 10492 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:93,43,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 10493 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 10494 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:96,45,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10495 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:98,43,0,0 0/0:.:53:53:0:0%:32,21,0,0 -Example1_ref 10496 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:98,44,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 10497 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:98,45,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 10498 . G T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=2.7083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:52:51:1:1.92%:28,23,1,0 -Example1_ref 10499 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:94,45,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 10500 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:98,44,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 10501 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:98,45,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 10502 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:97,43,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10503 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:94,44,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 10504 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:94,45,0,0 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 10505 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:95,48,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 10506 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:96,48,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 10507 . G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:93,49,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 10508 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:94,49,0,0 0/0:.:56:56:0:0%:29,27,0,0 -Example1_ref 10509 . A . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:96,48,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10510 . A . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:94,50,0,0 0/0:.:58:58:0:0%:31,27,0,0 -Example1_ref 10511 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:95,47,0,0 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 10512 . T G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=7.0647E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:92,49,0,1 0/0:.:59:59:0:0%:30,29,0,0 -Example1_ref 10513 . T C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.1359E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:96,50,0,1 0/0:.:59:59:0:0%:31,28,0,0 -Example1_ref 10514 . G T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.1287E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:91,52,1,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 10515 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:96,52,0,0 0/0:.:60:60:0:0%:31,29,0,0 -Example1_ref 10516 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 10517 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:96,51,0,0 0/0:.:61:61:0:0%:31,30,0,0 -Example1_ref 10518 . T C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=5.0153E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:96,50,0,1 0/0:.:61:60:1:1.64%:30,30,1,0 -Example1_ref 10519 . C . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:94,50,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 10520 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:95,52,0,0 0/0:.:60:60:0:0%:30,30,0,0 -Example1_ref 10521 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:94,57,0,0 0/0:.:62:62:0:0%:31,31,0,0 -Example1_ref 10522 . G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:96,56,0,0 0/0:.:59:59:0:0%:29,30,0,0 -Example1_ref 10523 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:97,56,0,0 0/0:.:62:62:0:0%:33,29,0,0 -Example1_ref 10524 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:93,62,0,0 0/0:.:64:64:0:0%:31,33,0,0 -Example1_ref 10525 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:95,68,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 10526 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:167:0:0%:96,71,0,0 0/0:.:68:67:0:0%:33,34,0,0 -Example1_ref 10527 . C . PASS DP=237;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:170:0:0%:95,75,0,0 0/0:.:66:65:0:0%:32,33,0,0 -Example1_ref 10528 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:95,78,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 10529 . G . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:91,79,0,0 0/0:.:65:65:0:0%:30,35,0,0 -Example1_ref 10530 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:101,80,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 10531 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:102,79,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 10532 . A G . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=7.2157E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:102,81,1,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 10533 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:103,76,0,0 0/0:.:67:67:0:0%:34,33,0,0 -Example1_ref 10534 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:103,82,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10535 . T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:100,82,0,0 0/0:.:72:72:0:0%:34,38,0,0 -Example1_ref 10536 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:102,83,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 10537 . CAATG C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=2.8685E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:101,78,0,0 0/0:.:72:71:1:1.39%:33,38,1,0 -Example1_ref 10538 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:100,81,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 10539 . A . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:99,84,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 10540 . T . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:102,84,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 10541 . G . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:102,83,0,0 0/0:.:73:73:0:0%:33,40,0,0 -Example1_ref 10542 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:102,85,0,0 0/0:.:71:71:0:0%:31,40,0,0 -Example1_ref 10543 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:104,83,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 10544 . G . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:108,83,0,0 0/0:.:76:76:0:0%:34,42,0,0 -Example1_ref 10545 . G T . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=2.7881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:104,90,0,0 0/0:.:75:74:1:1.33%:32,42,1,0 -Example1_ref 10546 . AT A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=7.2143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:201:1:0.5%:113,88,0,1 0/0:.:78:78:0:0%:36,42,0,0 -Example1_ref 10547 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:0:0%:111,89,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 10548 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:111,91,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 10549 . T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:112,91,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 10550 . G . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:110,90,0,0 0/0:.:78:78:0:0%:35,43,0,0 -Example1_ref 10551 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:107,89,0,0 0/0:.:75:75:0:0%:36,39,0,0 -Example1_ref 10552 . GA G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=2.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:106,89,0,0 0/0:.:75:74:1:1.33%:34,40,1,0 -Example1_ref 10553 . A . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:111,89,0,0 0/0:.:74:73:0:0%:35,38,0,0 -Example1_ref 10554 . C . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:110,88,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 10555 . T . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:113,90,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 10556 . G A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=2.6022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:109,90,0,0 0/0:.:70:69:1:1.43%:32,37,1,0 -Example1_ref 10557 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:109,89,0,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 10558 . G A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=2.5769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:103,90,0,0 0/0:.:67:66:1:1.49%:31,35,0,1 -Example1_ref 10559 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:110,87,0,0 0/0:.:68:68:0:0%:32,36,0,0 -Example1_ref 10560 . G T . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=7.5096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:195:1:0.51%:107,88,1,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 10561 . C . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:106,90,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 10562 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:110,91,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 10563 . G . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:110,91,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 10564 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:111,92,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 10565 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:112,89,0,0 0/0:.:66:66:0:0%:29,37,0,0 -Example1_ref 10566 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:111,92,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 10567 . C CTGTCT . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=2.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:112,92,0,0 0/0:.:68:67:1:1.47%:29,38,1,0 -Example1_ref 10568 . C . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:108,91,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 10569 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:112,92,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 10570 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:110,97,0,0 0/0:.:73:73:0:0%:33,40,0,0 -Example1_ref 10571 . A . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:110,99,0,0 0/0:.:72:72:0:0%:31,41,0,0 -Example1_ref 10572 . C . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:110,95,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 10573 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:108,96,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 10574 . A . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:106,101,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 10575 . C . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:102,101,0,0 0/0:.:72:72:0:0%:33,39,0,0 -Example1_ref 10576 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:99,100,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 10577 . G GCTGTCTCTTATACAC . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=7.3764E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:193:1:0.52%:94,99,1,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 10578 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 10579 . T . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:98,100,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10580 . C . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:96,94,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 10581 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:97,100,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 10582 . C CA . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=2.128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:190:5:2.56%:96,94,3,2 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 10583 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:97,99,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 10584 . A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:95,100,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 10585 . A . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:90,101,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 10586 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:94,99,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10587 . A G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=7.3664E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:1:0.52%:94,98,0,1 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 10588 . A . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:93,100,0,0 0/0:.:70:70:0:0%:31,39,0,0 -Example1_ref 10589 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:94,100,0,0 0/0:.:70:70:0:0%:33,37,0,0 -Example1_ref 10590 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:96,103,0,0 0/0:.:73:73:0:0%:33,40,0,0 -Example1_ref 10591 . C . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:94,101,0,0 0/0:.:71:71:0:0%:31,40,0,0 -Example1_ref 10592 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 10593 . G . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:95,103,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 10594 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:96,97,0,0 0/0:.:67:67:0:0%:31,36,0,0 -Example1_ref 10595 . C . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:94,98,0,0 0/0:.:61:61:0:0%:29,32,0,0 -Example1_ref 10596 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:96,102,0,0 0/0:.:67:67:0:0%:30,37,0,0 -Example1_ref 10597 . T . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:98,104,0,0 0/0:.:66:66:0:0%:30,36,0,0 -Example1_ref 10598 . A . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:96,104,0,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 10599 . A . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:94,103,0,0 0/0:.:69:69:0:0%:31,38,0,0 -Example1_ref 10600 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:88,101,0,0 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 10601 . T C . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=7.5294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:89,102,0,1 0/0:.:63:63:0:0%:26,37,0,0 -Example1_ref 10602 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:87,96,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10603 . G T . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=7.5918E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:84,101,1,0 0/0:.:59:59:0:0%:26,33,0,0 -Example1_ref 10604 . A G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=7.6016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:89,97,0,1 0/0:.:59:59:0:0%:26,33,0,0 -Example1_ref 10605 . G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:81,99,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 10606 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:90,98,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10607 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:87,98,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 10608 . A . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:87,101,0,0 0/0:.:60:60:0:0%:26,34,0,0 -Example1_ref 10609 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:88,101,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 10610 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:84,100,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10611 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:87,101,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 10612 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:86,103,0,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 10613 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:184:0:0%:85,99,0,0 0/0:.:56:56:0:0%:24,32,0,0 -Example1_ref 10614 . C T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=7.623E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:85,100,0,1 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 10615 . A . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:86,100,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10616 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:85,101,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 10617 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 10618 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:84,101,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 10619 . G A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:179:1:0.56%:77,102,0,1 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 10620 . C . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:83,102,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 10621 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:83,103,0,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 10622 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:84,101,0,0 0/0:.:58:58:0:0%:28,30,0,0 -Example1_ref 10623 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:60:60:0:0%:28,32,0,0 -Example1_ref 10624 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:86,105,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 10625 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:84,103,0,0 0/0:.:56:56:0:0%:25,31,0,0 -Example1_ref 10626 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:87,102,0,0 0/0:.:59:59:0:0%:27,32,0,0 -Example1_ref 10627 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:81,105,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 10628 . G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:82,101,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10629 . G . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:78,102,0,0 0/0:.:59:59:0:0%:26,33,0,0 -Example1_ref 10630 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:78,99,0,0 0/0:.:55:55:0:0%:24,31,0,0 -Example1_ref 10631 . GAAA G . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=7.625E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:182:1:0.55%:80,102,1,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10632 . A G . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=7.6271E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:179:1:0.56%:78,101,0,1 0/0:.:57:56:0:0%:23,33,0,0 -Example1_ref 10633 . A G . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=5.7004E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:168:2:1.18%:77,91,1,1 0/0:.:56:55:0:0%:25,30,0,0 -Example1_ref 10634 . A . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:81,97,0,0 0/0:.:56:56:0:0%:24,32,0,0 -Example1_ref 10635 . C . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:81,94,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 10636 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:81,95,0,0 0/0:.:56:56:0:0%:24,32,0,0 -Example1_ref 10637 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:80,96,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 10638 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:79,96,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10639 . C . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:80,96,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 10640 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:79,98,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 10641 . A C . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=7.5319E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:78,98,1,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 10642 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:79,92,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 10643 . CA C . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=7.5214E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:81,94,1,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 10644 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:80,96,0,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 10645 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:78,94,0,0 0/0:.:60:60:0:0%:25,35,0,0 -Example1_ref 10646 . A C . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=7.5431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:78,96,1,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 10647 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:78,94,0,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 10648 . A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:77,96,0,0 0/0:.:58:58:0:0%:23,35,0,0 -Example1_ref 10649 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:79,92,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 10650 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:77,93,0,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 10651 . T . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:80,92,0,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 10652 . G T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=2.6126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:74,90,0,0 0/0:.:58:57:1:1.72%:24,33,0,1 -Example1_ref 10653 . G . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:71,92,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10654 . A T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=7.4123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:71,97,1,0 0/0:.:59:59:0:0%:24,35,0,0 -Example1_ref 10655 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:77,91,0,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 10656 . T A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=2.6106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:77,90,0,0 0/0:.:59:58:1:1.69%:24,34,0,1 -Example1_ref 10657 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:77,90,0,0 0/0:.:58:58:0:0%:22,36,0,0 -Example1_ref 10658 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:76,91,0,0 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 10659 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:71,95,0,0 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 10660 . T . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:75,92,0,0 0/0:.:60:60:0:0%:24,36,0,0 -Example1_ref 10661 . A AAGAGAC . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=7.3894E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:166:1:0.6%:73,93,0,1 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 10662 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:73,91,0,0 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 10663 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:60:60:0:0%:25,35,0,0 -Example1_ref 10664 . T A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.3478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:168:1:0.59%:75,93,0,1 0/0:.:61:61:0:0%:25,36,0,0 -Example1_ref 10665 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:73,93,0,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 10666 . G A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=2.6977E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:63,94,0,0 0/0:.:58:57:1:1.72%:22,35,0,1 -Example1_ref 10667 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:67,92,0,0 0/0:.:56:56:0:0%:21,35,0,0 -Example1_ref 10668 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:0:0%:67,92,0,0 0/0:.:57:57:0:0%:21,36,0,0 -Example1_ref 10669 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:66,93,0,0 0/0:.:56:56:0:0%:21,35,0,0 -Example1_ref 10670 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:63,95,0,0 0/0:.:56:56:0:0%:20,36,0,0 -Example1_ref 10671 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:59,94,0,0 0/0:.:57:57:0:0%:21,36,0,0 -Example1_ref 10672 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:61,91,0,0 0/0:.:56:56:0:0%:21,35,0,0 -Example1_ref 10673 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:61,92,0,0 0/0:.:57:57:0:0%:21,36,0,0 -Example1_ref 10674 . G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:60,93,0,0 0/0:.:58:58:0:0%:20,38,0,0 -Example1_ref 10675 . G T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=7.346E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:154:1:0.65%:61,93,1,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 10676 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:63,93,0,0 0/0:.:57:57:0:0%:20,37,0,0 -Example1_ref 10677 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:63,91,0,0 0/0:.:55:55:0:0%:19,36,0,0 -Example1_ref 10678 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:63,93,0,0 0/0:.:55:55:0:0%:19,36,0,0 -Example1_ref 10679 . C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:63,91,0,0 0/0:.:55:55:0:0%:20,35,0,0 -Example1_ref 10680 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:55:55:0:0%:18,37,0,0 -Example1_ref 10681 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:55:55:0:0%:20,35,0,0 -Example1_ref 10682 . C A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.3786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:63,88,0,1 0/0:.:54:54:0:0%:19,35,0,0 -Example1_ref 10683 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:63,86,0,0 0/0:.:55:55:0:0%:19,36,0,0 -Example1_ref 10684 . T A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=7.2683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:63,85,0,1 0/0:.:56:56:0:0%:20,36,0,0 -Example1_ref 10685 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:61,90,0,0 0/0:.:53:53:0:0%:20,33,0,0 -Example1_ref 10686 . G T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=2.5728E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:60,93,0,0 0/0:.:53:52:1:1.89%:18,34,1,0 -Example1_ref 10687 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:0:0%:62,91,0,0 0/0:.:54:54:0:0%:19,35,0,0 -Example1_ref 10688 . C . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:56:56:0:0%:21,35,0,0 -Example1_ref 10689 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:62,91,0,0 0/0:.:55:55:0:0%:21,34,0,0 -Example1_ref 10690 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:62,91,0,0 0/0:.:56:56:0:0%:21,35,0,0 -Example1_ref 10691 . G T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.3786E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:151:1:0.66%:60,91,1,0 0/0:.:54:54:0:0%:19,35,0,0 -Example1_ref 10692 . A T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=2.7885E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:60,90,0,0 0/0:.:58:57:1:1.72%:20,37,1,0 -Example1_ref 10693 . A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:62,89,0,0 0/0:.:57:57:0:0%:20,37,0,0 -Example1_ref 10694 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:59,90,0,0 0/0:.:55:55:0:0%:20,35,0,0 -Example1_ref 10695 . G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:55:55:0:0%:19,36,0,0 -Example1_ref 10696 . A G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=7.2549E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:61,86,0,1 0/0:.:56:56:0:0%:20,36,0,0 -Example1_ref 10697 . A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:62,87,0,0 0/0:.:55:55:0:0%:19,36,0,0 -Example1_ref 10698 . G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:64,86,0,0 0/0:.:53:53:0:0%:18,35,0,0 -Example1_ref 10699 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:65,83,0,0 0/0:.:56:56:0:0%:19,37,0,0 -Example1_ref 10700 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:65,88,0,0 0/0:.:57:57:0:0%:20,37,0,0 -Example1_ref 10701 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:66,83,0,0 0/0:.:53:53:0:0%:19,34,0,0 -Example1_ref 10702 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:68,84,0,0 0/0:.:53:53:0:0%:19,34,0,0 -Example1_ref 10703 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:68,85,0,0 0/0:.:54:54:0:0%:21,33,0,0 -Example1_ref 10704 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:67,83,0,0 0/0:.:53:53:0:0%:20,33,0,0 -Example1_ref 10705 . C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:76,78,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 10706 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:76,83,0,0 0/0:.:55:55:0:0%:21,34,0,0 -Example1_ref 10707 . A G . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=2.6066E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:76,80,0,0 0/0:.:55:54:1:1.82%:21,33,1,0 -Example1_ref 10708 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:77,80,0,0 0/0:.:56:56:0:0%:23,33,0,0 -Example1_ref 10709 . G A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=2.5118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:75,83,0,0 0/0:.:53:52:1:1.89%:19,33,1,0 -Example1_ref 10710 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:77,83,0,0 0/0:.:55:55:0:0%:22,33,0,0 -Example1_ref 10711 . AGG A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=5.8222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:153:2:1.29%:76,77,2,0 0/0:.:52:51:1:1.92%:20,31,1,0 -Example1_ref 10712 . G GGT . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=2.6596E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:72,66,0,0 0/0:.:50:49:1:2%:19,30,1,0 -Example1_ref 10713 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:69,66,0,0 0/0:.:51:51:0:0%:19,32,0,0 -Example1_ref 10714 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:69,48,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 10715 . G T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=4.6033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:113:1:0.88%:64,49,1,0 0/0:.:41:40:1:2.44%:15,25,1,0 -Example1_ref 10716 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:0:0%:64,45,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 10717 . T . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:74,45,0,0 0/0:.:46:46:0:0%:21,25,0,0 -Example1_ref 10718 . C . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:74,46,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 10719 . CT C . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=2.5949E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:70,47,0,0 0/0:.:42:40:1:2.44%:16,24,1,0 -Example1_ref 10720 . T TCTAATGATATA . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=7.362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:69,50,1,0 0/0:.:44:43:0:0%:18,25,0,0 -Example1_ref 10721 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:67,50,0,0 0/0:.:43:42:0:0%:17,25,0,0 -Example1_ref 10722 . A . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:66,52,0,0 0/0:.:43:42:0:0%:17,25,0,0 -Example1_ref 10723 . C T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=7.2956E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:64,51,1,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 10724 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 10725 . G . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 10726 . TC T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=2.6316E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:40:39:1:2.5%:18,21,1,0 -Example1_ref 10727 . C . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:65,47,0,0 0/0:.:37:37:0:0%:16,21,0,0 -Example1_ref 10728 . C . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:65,48,0,0 0/0:.:35:35:0:0%:16,19,0,0 -Example1_ref 10729 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:66,46,0,0 0/0:.:37:37:0:0%:17,20,0,0 -Example1_ref 10730 . C . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:65,46,0,0 0/0:.:37:37:0:0%:16,21,0,0 -Example1_ref 10731 . C . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:37:37:0:0%:17,20,0,0 -Example1_ref 10732 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 10733 . T . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:65,45,0,0 0/0:.:38:38:0:0%:17,21,0,0 -Example1_ref 10734 . C . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:63,48,0,0 0/0:.:36:36:0:0%:16,20,0,0 -Example1_ref 10735 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:36:36:0:0%:15,21,0,0 -Example1_ref 10736 . G . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:63,48,0,0 0/0:.:36:36:0:0%:15,21,0,0 -Example1_ref 10737 . A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:62,46,0,0 0/0:.:34:34:0:0%:14,20,0,0 -Example1_ref 10738 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:62,49,0,0 0/0:.:35:35:0:0%:14,21,0,0 -Example1_ref 10739 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:61,48,0,0 0/0:.:35:35:0:0%:14,21,0,0 -Example1_ref 10740 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:61,47,0,0 0/0:.:36:36:0:0%:15,21,0,0 -Example1_ref 10741 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:62,47,0,0 0/0:.:37:37:0:0%:15,22,0,0 -Example1_ref 10742 . G . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:63,46,0,0 0/0:.:38:38:0:0%:16,22,0,0 -Example1_ref 10743 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 10744 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:64,48,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 10745 . C . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 10746 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:64,49,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 10747 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:65,50,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 10748 . A . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 10749 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:67,51,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 10750 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:117:0:0%:67,50,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 10751 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:68,50,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10752 . C . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:66,50,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 10753 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:66,51,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 10754 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:67,49,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10755 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:66,51,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 10756 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:0:0%:66,49,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 10757 . G A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=2.6923E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:42:41:1:2.38%:17,24,1,0 -Example1_ref 10758 . A . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:66,48,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10759 . G . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:65,50,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10760 . G T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=2.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:61,43,0,0 0/0:.:40:39:1:2.5%:17,22,1,0 -Example1_ref 10761 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10762 . T A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=7.3154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:108:1:0.92%:64,44,1,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10763 . C . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:65,43,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10764 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:67,45,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10765 . C T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=2.5478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:40:39:1:2.5%:17,22,1,0 -Example1_ref 10766 . C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:71,44,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10767 . C . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10768 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10769 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10770 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 10771 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10772 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:72,46,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10773 . C . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:73,44,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 10774 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:72,45,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10775 . G . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:75,45,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 10776 . G . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:75,45,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 10777 . A . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:74,45,0,0 0/0:.:38:38:0:0%:15,23,0,0 -Example1_ref 10778 . T . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:74,46,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 10779 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:74,44,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 10780 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:73,47,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 10781 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10782 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:74,49,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10783 . C CCT . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:72,47,1,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 10784 . G . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 10785 . T . PASS DP=164;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:74,47,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 10786 . T . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:74,47,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 10787 . C . PASS DP=161;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:73,45,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 10788 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 10789 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:75,46,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 10790 . A . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:75,47,0,0 0/0:.:45:45:0:0%:20,25,0,0 -Example1_ref 10791 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:0:0%:77,50,0,0 0/0:.:48:48:0:0%:23,25,0,0 -Example1_ref 10792 . C A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=4.7678E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:76,49,0,1 0/0:.:48:47:1:2.08%:24,23,0,1 -Example1_ref 10793 . C . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:75,48,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 10794 . C . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:76,49,0,0 0/0:.:45:45:0:0%:24,21,0,0 -Example1_ref 10795 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:74,50,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 10796 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:71,54,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 10797 . G T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=2.9121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:74,55,0,0 0/0:.:53:52:1:1.89%:23,29,1,0 -Example1_ref 10798 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:72,54,0,0 0/0:.:51:51:0:0%:24,27,0,0 -Example1_ref 10799 . G GA . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=7.1508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:127:1:0.78%:74,53,0,1 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 10800 . G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:75,51,0,0 0/0:.:53:53:0:0%:25,28,0,0 -Example1_ref 10801 . G . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:73,49,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 10802 . G . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:0:0%:71,51,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 10803 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:75,50,0,0 0/0:.:55:55:0:0%:26,29,0,0 -Example1_ref 10804 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 10805 . A ATCTGTC . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=6.9355E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:74,54,1,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 10806 . T A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=6.9022E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:72,54,1,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 10807 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 10808 . G . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:74,55,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 10809 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:75,55,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 10810 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:76,55,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 10811 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 10812 . G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:74,53,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 10813 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:74,54,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 10814 . T G . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=2.905E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:72,55,0,0 0/0:.:52:51:1:1.92%:23,28,0,1 -Example1_ref 10815 . T . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:72,55,0,0 0/0:.:51:51:0:0%:21,30,0,0 -Example1_ref 10816 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:73,54,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 10817 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:74,56,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 10818 . G . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:76,56,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 10819 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 10820 . C . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:75,54,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 10821 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 10822 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:74,57,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 10823 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 10824 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 10825 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:72,57,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 10826 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:77,57,0,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 10827 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:75,57,0,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 10828 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:73,57,0,0 0/0:.:55:55:0:0%:21,34,0,0 -Example1_ref 10829 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:77,56,0,0 0/0:.:57:57:0:0%:23,34,0,0 -Example1_ref 10830 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:72,56,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 10831 . G T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=3.0645E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:73,56,0,0 0/0:.:57:56:1:1.75%:22,34,0,1 -Example1_ref 10832 . A . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:76,57,0,0 0/0:.:58:58:0:0%:23,35,0,0 -Example1_ref 10833 . C . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:76,54,0,0 0/0:.:55:55:0:0%:22,33,0,0 -Example1_ref 10834 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:77,55,0,0 0/0:.:57:57:0:0%:22,35,0,0 -Example1_ref 10835 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:85,57,0,0 0/0:.:63:63:0:0%:30,33,0,0 -Example1_ref 10836 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:83,59,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 10837 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:85,61,0,0 0/0:.:64:64:0:0%:30,34,0,0 -Example1_ref 10838 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:87,63,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 10839 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:88,63,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 10840 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:91,65,0,0 0/0:.:67:67:0:0%:32,35,0,0 -Example1_ref 10841 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:90,64,0,0 0/0:.:66:66:0:0%:32,34,0,0 -Example1_ref 10842 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:89,65,0,0 0/0:.:65:65:0:0%:32,33,0,0 -Example1_ref 10843 . CA C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=7.1111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:94,65,1,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 10844 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:0:0%:92,65,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 10845 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:95,63,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 10846 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:95,66,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 10847 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:92,68,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 10848 . G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:98,69,0,0 0/0:.:66:66:0:0%:31,35,0,0 -Example1_ref 10849 . T . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:99,65,0,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 10850 . G . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:168:168:0:0%:105,63,0,0 0/0:.:65:65:0:0%:31,34,0,0 -Example1_ref 10851 . C . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:104,63,0,0 0/0:.:66:66:0:0%:33,33,0,0 -Example1_ref 10852 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:108,65,0,0 0/0:.:66:66:0:0%:34,32,0,0 -Example1_ref 10853 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:106,69,0,0 0/0:.:69:69:0:0%:33,36,0,0 -Example1_ref 10854 . T C . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=7.2314E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:107,67,1,0 0/0:.:67:67:0:0%:33,34,0,0 -Example1_ref 10855 . A G . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=7.1371E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:176:1:0.56%:108,68,0,1 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 10856 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:106,68,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 10857 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:110,70,0,0 0/0:.:69:69:0:0%:34,35,0,0 -Example1_ref 10858 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:106,68,0,0 0/0:.:68:68:0:0%:31,37,0,0 -Example1_ref 10859 . C . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:108,68,0,0 0/0:.:68:68:0:0%:33,35,0,0 -Example1_ref 10860 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:106,69,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 10861 . A . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:108,69,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 10862 . G . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:106,70,0,0 0/0:.:74:74:0:0%:36,38,0,0 -Example1_ref 10863 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:106,67,0,0 0/0:.:70:70:0:0%:34,36,0,0 -Example1_ref 10864 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:106,67,0,0 0/0:.:71:71:0:0%:35,36,0,0 -Example1_ref 10865 . G T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=7.2428E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:175:1:0.57%:106,69,1,0 0/0:.:67:67:0:0%:35,32,0,0 -Example1_ref 10866 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:172:172:0:0%:105,67,0,0 0/0:.:71:71:0:0%:36,35,0,0 -Example1_ref 10867 . T . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:108,69,0,0 0/0:.:70:70:0:0%:36,34,0,0 -Example1_ref 10868 . G . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:110,70,0,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 10869 . T . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:109,69,0,0 0/0:.:74:74:0:0%:38,36,0,0 -Example1_ref 10870 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:110,69,0,0 0/0:.:74:74:0:0%:38,36,0,0 -Example1_ref 10871 . A . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:109,70,0,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 10872 . G T . PASS DP=254;SS=0;SSC=0;GPV=1E0;SPV=7.0751E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:178:1:0.56%:108,70,1,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 10873 . G . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:106,68,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 10874 . A . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:107,72,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 10875 . T . PASS DP=249;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:107,69,0,0 0/0:.:73:73:0:0%:38,35,0,0 -Example1_ref 10876 . A C . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=7.0565E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:174:1:0.57%:105,69,1,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 10877 . G . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:112,70,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 10878 . G T . PASS DP=256;SS=0;SSC=0;GPV=1E0;SPV=7.1094E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:181:1:0.55%:111,70,1,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 10879 . T . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:118,69,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 10880 . G . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:114,73,0,0 0/0:.:78:78:0:0%:39,39,0,0 -Example1_ref 10881 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:116,73,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 10882 . G . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:115,73,0,0 0/0:.:73:73:0:0%:37,36,0,0 -Example1_ref 10883 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:119,74,0,0 0/0:.:76:76:0:0%:39,37,0,0 -Example1_ref 10884 . G . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:116,74,0,0 0/0:.:72:72:0:0%:39,33,0,0 -Example1_ref 10885 . G . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:113,73,0,0 0/0:.:73:73:0:0%:38,35,0,0 -Example1_ref 10886 . G GC . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=7.1536E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:190:1:0.52%:113,77,1,0 0/0:.:76:76:0:0%:39,37,0,0 -Example1_ref 10887 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:121,74,0,0 0/0:.:77:77:0:0%:40,37,0,0 -Example1_ref 10888 . G . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:114,75,0,0 0/0:.:78:78:0:0%:40,38,0,0 -Example1_ref 10889 . A G . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=7.0149E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:187:1:0.53%:112,75,1,0 0/0:.:80:80:0:0%:42,38,0,0 -Example1_ref 10890 . C . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:123,71,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 10891 . T . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:121,73,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 10892 . G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:120,74,0,0 0/0:.:77:77:0:0%:40,37,0,0 -Example1_ref 10893 . C A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=7.0566E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:119,67,0,1 0/0:.:78:78:0:0%:42,36,0,0 -Example1_ref 10894 . A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:118,76,0,0 0/0:.:77:77:0:0%:41,36,0,0 -Example1_ref 10895 . A . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:188:188:0:0%:111,77,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 10896 . T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:111,78,0,0 0/0:.:78:78:0:0%:41,37,0,0 -Example1_ref 10897 . G . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:112,82,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 10898 . G . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:192:0:0%:111,81,0,0 0/0:.:85:85:0:0%:39,46,0,0 -Example1_ref 10899 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:113,81,0,0 0/0:.:84:84:0:0%:39,45,0,0 -Example1_ref 10900 . T . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:112,81,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 10901 . C A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=2.971E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:111,83,0,0 0/0:.:82:81:1:1.22%:38,43,0,1 -Example1_ref 10902 . A . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:112,85,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 10903 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:109,85,0,0 0/0:.:82:82:0:0%:38,44,0,0 -Example1_ref 10904 . G . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:112,86,0,0 0/0:.:83:83:0:0%:38,45,0,0 -Example1_ref 10905 . G . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:110,85,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 10906 . A . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:112,86,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 10907 . G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:103,83,0,0 0/0:.:85:85:0:0%:38,47,0,0 -Example1_ref 10908 . AC A . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=6.9314E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:192:191:1:0.52%:106,85,0,1 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 10909 . CAATCA C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=3.0935E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:192:0:0%:111,81,0,0 0/0:.:86:85:1:1.16%:39,46,0,1 -Example1_ref 10910 . A G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=6.9123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:196:1:0.51%:111,85,0,1 0/0:.:88:88:0:0%:40,48,0,0 -Example1_ref 10911 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:113,87,0,0 0/0:.:84:84:0:0%:39,45,0,0 -Example1_ref 10912 . T A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=6.5597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:198:2:1%:111,87,0,2 0/0:.:85:84:1:1.18%:39,45,1,0 -Example1_ref 10913 . C . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:198:198:0:0%:107,91,0,0 0/0:.:89:89:0:0%:39,50,0,0 -Example1_ref 10914 . A AG . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=5.2364E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:200:1:0.5%:105,95,0,1 0/0:.:90:89:1:1.11%:40,49,0,1 -Example1_ref 10915 . A G . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=3.0233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:113,97,0,0 0/0:.:91:90:1:1.1%:39,51,1,0 -Example1_ref 10916 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:111,100,0,0 0/0:.:95:95:0:0%:42,53,0,0 -Example1_ref 10917 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 10918 . C A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=3.0519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:110,104,0,0 0/0:.:94:93:1:1.06%:42,51,0,1 -Example1_ref 10919 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:95:95:0:0%:40,55,0,0 -Example1_ref 10920 . T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:112,105,0,0 0/0:.:96:96:0:0%:41,55,0,0 -Example1_ref 10921 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:96:96:0:0%:41,55,0,0 -Example1_ref 10922 . G T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=6.9206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:217:1:0.46%:112,105,1,0 0/0:.:97:97:0:0%:41,56,0,0 -Example1_ref 10923 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:98:98:0:0%:42,56,0,0 -Example1_ref 10924 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:115,107,0,0 0/0:.:96:96:0:0%:41,55,0,0 -Example1_ref 10925 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:113,108,0,0 0/0:.:99:99:0:0%:42,57,0,0 -Example1_ref 10926 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:112,108,0,0 0/0:.:100:100:0:0%:42,58,0,0 -Example1_ref 10927 . A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:112,108,0,0 0/0:.:99:99:0:0%:43,56,0,0 -Example1_ref 10928 . A . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:113,109,0,0 0/0:.:101:101:0:0%:43,58,0,0 -Example1_ref 10929 . C A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=5.2071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:116,104,0,1 0/0:.:98:97:1:1.02%:44,53,0,1 -Example1_ref 10930 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:115,108,0,0 0/0:.:101:101:0:0%:44,57,0,0 -Example1_ref 10931 . A G . PASS DP=319;SS=3;SSC=99;GPV=1E0;SPV=1.2456E-10 GT:GQ:DP:RD:AD:FREQ:DP4 0/1:.:218:157:60:27.65%:80,77,28,32 0/0:.:101:100:1:0.99%:43,57,1,0 -Example1_ref 10932 . C . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:111,101,0,0 0/0:.:97:97:0:0%:45,52,0,0 -Example1_ref 10933 . A . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:111,109,0,0 0/0:.:100:100:0:0%:45,55,0,0 -Example1_ref 10934 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:110,111,0,0 0/0:.:100:100:0:0%:43,57,0,0 -Example1_ref 10935 . G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:106,111,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 10936 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:108,107,0,0 0/0:.:98:98:0:0%:42,56,0,0 -Example1_ref 10937 . G . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:111,107,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 10938 . T A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=3.141E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:111,103,0,0 0/0:.:98:97:1:1.02%:43,54,0,1 -Example1_ref 10939 . A T . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=6.8889E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:111,105,0,1 0/0:.:98:98:0:0%:43,55,0,0 -Example1_ref 10940 . C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:109,100,0,0 0/0:.:92:92:0:0%:42,50,0,0 -Example1_ref 10941 . C A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=6.8874E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:1:0.48%:106,101,0,1 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 10942 . C A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=5.2107E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:104,100,1,0 0/0:.:91:90:1:1.1%:40,50,0,1 -Example1_ref 10943 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:107,104,0,0 0/0:.:98:98:0:0%:43,55,0,0 -Example1_ref 10944 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:108,104,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 10945 . C . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:111,103,0,0 0/0:.:93:93:0:0%:40,53,0,0 -Example1_ref 10946 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:113,106,0,0 0/0:.:93:93:0:0%:40,53,0,0 -Example1_ref 10947 . A . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 10948 . T . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 10949 . T C . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=4.7723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:213:2:0.93%:110,103,1,1 0/0:.:96:96:0:0%:41,55,0,0 -Example1_ref 10950 . A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:110,105,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 10951 . T . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:113,101,0,0 0/0:.:93:93:0:0%:43,50,0,0 -Example1_ref 10952 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:111,101,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 10953 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:111,102,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 10954 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:107,97,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 10955 . T C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=6.9205E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:106,102,0,1 0/0:.:93:93:0:0%:42,51,0,0 -Example1_ref 10956 . A G . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=6.8852E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:107,102,0,1 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 10957 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:107,101,0,0 0/0:.:92:92:0:0%:41,51,0,0 -Example1_ref 10958 . A . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:107,103,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 10959 . GA G . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=6.9055E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:108,103,0,1 0/0:.:95:95:0:0%:42,53,0,0 -Example1_ref 10960 . A T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=6.9103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:207:1:0.48%:105,102,1,0 0/0:.:93:93:0:0%:40,53,0,0 -Example1_ref 10961 . G A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=3.0421E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:111,104,0,0 0/0:.:94:93:1:1.06%:41,52,0,1 -Example1_ref 10962 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:109,102,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 10963 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:107,104,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 10964 . A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:109,105,0,0 0/0:.:94:94:0:0%:42,52,0,0 -Example1_ref 10965 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:110,104,0,0 0/0:.:96:96:0:0%:42,54,0,0 -Example1_ref 10966 . G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:108,105,0,0 0/0:.:95:95:0:0%:41,54,0,0 -Example1_ref 10967 . A ACTGTC . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=6.8852E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:103,106,1,0 0/0:.:95:95:0:0%:41,54,0,0 -Example1_ref 10968 . A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:108,99,0,0 0/0:.:94:94:0:0%:41,53,0,0 -Example1_ref 10969 . G . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:109,101,0,0 0/0:.:93:93:0:0%:40,53,0,0 -Example1_ref 10970 . G . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:109,101,0,0 0/0:.:92:92:0:0%:39,53,0,0 -Example1_ref 10971 . A . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:106,96,0,0 0/0:.:92:92:0:0%:39,53,0,0 -Example1_ref 10972 . G . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:108,95,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 10973 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:108,100,0,0 0/0:.:95:95:0:0%:42,53,0,0 -Example1_ref 10974 . T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:112,100,0,0 0/0:.:91:91:0:0%:40,51,0,0 -Example1_ref 10975 . A G . PASS DP=304;SS=0;SSC=0;GPV=1E0;SPV=6.9079E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:110,99,0,1 0/0:.:94:94:0:0%:41,53,0,0 -Example1_ref 10976 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:117,100,0,0 0/0:.:93:93:0:0%:39,54,0,0 -Example1_ref 10977 . T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:113,99,0,0 0/0:.:94:94:0:0%:40,54,0,0 -Example1_ref 10978 . T . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 10979 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:116,103,0,0 0/0:.:93:93:0:0%:41,52,0,0 -Example1_ref 10980 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:116,108,0,0 0/0:.:94:94:0:0%:41,53,0,0 -Example1_ref 10981 . TA T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=7.0833E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:114,106,0,1 0/0:.:91:91:0:0%:40,51,0,0 -Example1_ref 10982 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:113,105,0,0 0/0:.:91:91:0:0%:38,53,0,0 -Example1_ref 10983 . A T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=5.0978E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:113,106,1,0 0/0:.:94:93:1:1.06%:39,54,1,0 -Example1_ref 10984 . A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:117,102,0,0 0/0:.:90:90:0:0%:38,52,0,0 -Example1_ref 10985 . G . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:115,105,0,0 0/0:.:89:89:0:0%:39,50,0,0 -Example1_ref 10986 . A T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=4.9993E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:110,102,1,0 0/0:.:88:87:1:1.14%:38,49,1,0 -Example1_ref 10987 . T C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.1854E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:112,104,1,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 10988 . G . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:115,105,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 10989 . T C . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=7.1854E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:113,103,1,0 0/0:.:85:85:0:0%:38,47,0,0 -Example1_ref 10990 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:114,102,0,0 0/0:.:84:84:0:0%:38,46,0,0 -Example1_ref 10991 . G GC . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=7.1096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:111,102,1,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 10992 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:116,102,0,0 0/0:.:84:84:0:0%:36,48,0,0 -Example1_ref 10993 . G A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=2.8188E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:112,102,0,0 0/0:.:84:83:1:1.19%:35,48,1,0 -Example1_ref 10994 . A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:115,99,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 10995 . G . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:118,101,0,0 0/0:.:86:86:0:0%:38,48,0,0 -Example1_ref 10996 . A AT . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=4.4765E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:212:3:1.4%:112,100,2,1 0/0:.:87:85:2:2.3%:37,48,1,1 -Example1_ref 10997 . T . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:114,95,0,0 0/0:.:84:84:0:0%:37,47,0,0 -Example1_ref 10998 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:110,97,0,0 0/0:.:83:83:0:0%:37,46,0,0 -Example1_ref 10999 . T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:112,94,0,0 0/0:.:85:85:0:0%:37,48,0,0 -Example1_ref 11000 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:110,98,0,0 0/0:.:82:82:0:0%:37,45,0,0 -Example1_ref 11001 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:114,96,0,0 0/0:.:82:82:0:0%:36,46,0,0 -Example1_ref 11002 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:114,96,0,0 0/0:.:84:84:0:0%:37,47,0,0 -Example1_ref 11003 . G . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:117,99,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 11004 . A . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:115,97,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 11005 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:119,92,0,0 0/0:.:85:85:0:0%:38,47,0,0 -Example1_ref 11006 . T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:117,95,0,0 0/0:.:83:83:0:0%:37,46,0,0 -Example1_ref 11007 . C . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:133,97,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 11008 . A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:133,98,0,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 11009 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:132,94,0,0 0/0:.:92:92:0:0%:47,45,0,0 -Example1_ref 11010 . T . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:134,97,0,0 0/0:.:94:94:0:0%:47,47,0,0 -Example1_ref 11011 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:134,102,0,0 0/0:.:92:92:0:0%:45,47,0,0 -Example1_ref 11012 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:132,103,0,0 0/0:.:93:93:0:0%:45,48,0,0 -Example1_ref 11013 . G . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:135,103,0,0 0/0:.:96:96:0:0%:49,47,0,0 -Example1_ref 11014 . A T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=7.1212E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:234:1:0.43%:132,102,1,0 0/0:.:95:95:0:0%:48,47,0,0 -Example1_ref 11015 . G GCTGTCTCTT . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=2.8399E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:0:0%:135,102,0,0 0/0:.:94:93:1:1.06%:45,48,1,0 -Example1_ref 11016 . A T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=2.8349E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:135,95,0,0 0/0:.:91:90:1:1.1%:46,44,1,0 -Example1_ref 11017 . G A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=7.234E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:140,97,0,1 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 11018 . G T . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=7.1692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:1:0.43%:136,96,0,1 0/0:.:92:92:0:0%:48,44,0,0 -Example1_ref 11019 . T . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:144,98,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 11020 . G . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:142,99,0,0 0/0:.:92:92:0:0%:48,44,0,0 -Example1_ref 11021 . AT A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=7.2973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:1:0.41%:141,101,1,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 11022 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:0:0%:142,98,0,0 0/0:.:89:89:0:0%:46,43,0,0 -Example1_ref 11023 . G T . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:240:1:0.41%:141,99,0,1 0/0:.:91:91:0:0%:49,42,0,0 -Example1_ref 11024 . G . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:141,98,0,0 0/0:.:90:90:0:0%:48,42,0,0 -Example1_ref 11025 . A T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=2.6646E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:134,100,0,0 0/0:.:85:84:1:1.18%:42,42,1,0 -Example1_ref 11026 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:136,98,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 11027 . G . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:150,93,0,0 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 11028 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:154,94,0,0 0/0:.:91:91:0:0%:47,44,0,0 -Example1_ref 11029 . T . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:242:0:0%:152,90,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 11030 . C A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.2941E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:151,96,0,1 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 11031 . T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:152,98,0,0 0/0:.:93:93:0:0%:49,44,0,0 -Example1_ref 11032 . A C . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=4.654E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:149,98,1,0 0/0:.:91:90:1:1.1%:47,43,1,0 -Example1_ref 11033 . G T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=2.6706E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:149,98,0,0 0/0:.:90:89:1:1.11%:47,42,1,0 -Example1_ref 11034 . G . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:148,100,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 11035 . T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:152,99,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 11036 . C CTCTTAT . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=2.7434E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:148,98,0,0 0/0:.:93:92:1:1.08%:48,44,1,0 -Example1_ref 11037 . A G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=7.3512E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:1:0.4%:148,98,0,1 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 11038 . T . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:142,100,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 11039 . G . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:139,100,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 11040 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:140,102,0,0 0/0:.:90:90:0:0%:47,43,0,0 -Example1_ref 11041 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:141,103,0,0 0/0:.:93:93:0:0%:49,44,0,0 -Example1_ref 11042 . C . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:140,99,0,0 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 11043 . T . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:139,101,0,0 0/0:.:91:91:0:0%:48,43,0,0 -Example1_ref 11044 . T C . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=1.0766E-7 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:139,98,0,0 0/0:.:90:78:12:13.33%:41,37,5,7 -Example1_ref 11045 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:139,99,0,0 0/0:.:91:91:0:0%:46,45,0,0 -Example1_ref 11046 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:138,97,0,0 0/0:.:94:94:0:0%:49,45,0,0 -Example1_ref 11047 . A ATCTTTCTC . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=2.9179E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:136,97,0,0 0/0:.:96:95:1:1.04%:49,46,1,0 -Example1_ref 11048 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:136,100,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 11049 . T C . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=7.1687E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:237:1:0.42%:136,101,0,1 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 11050 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:137,102,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 11051 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:138,101,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 11052 . A G . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=7.2036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:132,104,1,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 11053 . T . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:137,104,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 11054 . G . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:138,107,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 11055 . A T . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=7.3352E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:142,113,0,1 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 11056 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:139,114,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 11057 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:0:0%:141,115,0,0 0/0:.:92:92:0:0%:46,46,0,0 -Example1_ref 11058 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:145,111,0,0 0/0:.:90:90:0:0%:45,45,0,0 -Example1_ref 11059 . G . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:149,117,0,0 0/0:.:95:95:0:0%:48,47,0,0 -Example1_ref 11060 . A . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:160,119,0,0 0/0:.:97:97:0:0%:51,46,0,0 -Example1_ref 11061 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:160,117,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 11062 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:159,123,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 11063 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:162,124,0,0 0/0:.:96:96:0:0%:48,48,0,0 -Example1_ref 11064 . T C . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=7.4278E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:282:1:0.35%:162,120,1,0 0/0:.:98:98:0:0%:50,48,0,0 -Example1_ref 11065 . A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:161,135,0,0 0/0:.:101:101:0:0%:50,51,0,0 -Example1_ref 11066 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:162,138,0,0 0/0:.:100:100:0:0%:49,51,0,0 -Example1_ref 11067 . GTAGCA G . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=7.6981E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:285:4:1.38%:156,129,0,4 0/0:.:98:97:1:1.02%:48,49,0,1 -Example1_ref 11068 . T . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:289:0:0%:157,132,0,0 0/0:.:96:96:0:0%:48,48,0,0 -Example1_ref 11069 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:157,127,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 11070 . GCA G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=4.1962E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:278:3:1.07%:155,123,0,3 0/0:.:95:94:0:0%:49,45,0,0 -Example1_ref 11071 . C . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:154,121,0,0 0/0:.:96:95:0:0%:50,45,0,0 -Example1_ref 11072 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:155,128,0,0 0/0:.:97:96:0:0%:50,46,0,0 -Example1_ref 11073 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:154,128,0,0 0/0:.:97:96:0:0%:49,47,0,0 -Example1_ref 11074 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:155,127,0,0 0/0:.:96:96:0:0%:49,47,0,0 -Example1_ref 11075 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:155,128,0,0 0/0:.:100:100:0:0%:52,48,0,0 -Example1_ref 11076 . T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:289:0:0%:162,127,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 11077 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:0:0%:178,131,0,0 0/0:.:104:104:0:0%:56,48,0,0 -Example1_ref 11078 . T . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:183,128,0,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 11079 . T G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5669E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:310:1:0.32%:184,126,0,1 0/0:.:100:100:0:0%:55,45,0,0 -Example1_ref 11080 . C A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.4757E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:183,124,0,1 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 11081 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:187,129,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 11082 . T G . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=7.5059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:187,128,0,1 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 11083 . A ATCTGTCTCT . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=2.4882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:187,130,0,0 0/0:.:105:104:1:0.95%:56,48,1,0 -Example1_ref 11084 . T G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.5243E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:183,126,0,1 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 11085 . A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:0:0%:180,128,0,0 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 11086 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:186,125,0,0 0/0:.:100:100:0:0%:52,48,0,0 -Example1_ref 11087 . A . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:184,117,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 11088 . G . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:181,115,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 11089 . C . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:183,113,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 11090 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:186,116,0,0 0/0:.:96:96:0:0%:54,42,0,0 -Example1_ref 11091 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:187,116,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 11092 . A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:186,116,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 11093 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:191,116,0,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 11094 . G . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:200,121,0,0 0/0:.:100:100:0:0%:56,44,0,0 -Example1_ref 11095 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:200,122,0,0 0/0:.:96:96:0:0%:53,43,0,0 -Example1_ref 11096 . A G . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=7.6674E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:209,122,0,1 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 11097 . T . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:213,123,0,0 0/0:.:105:105:0:0%:62,43,0,0 -Example1_ref 11098 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:221,124,0,0 0/0:.:109:109:0:0%:65,44,0,0 -Example1_ref 11099 . T A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=7.6754E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:223,126,1,0 0/0:.:106:106:0:0%:63,43,0,0 -Example1_ref 11100 . A . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:225,129,0,0 0/0:.:107:107:0:0%:65,42,0,0 -Example1_ref 11101 . T . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:224,128,0,0 0/0:.:103:103:0:0%:64,39,0,0 -Example1_ref 11102 . TA T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.7009E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:220,124,0,1 0/0:.:103:103:0:0%:66,37,0,0 -Example1_ref 11103 . A G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=2.3146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:221,121,0,0 0/0:.:103:102:1:0.97%:65,37,1,0 -Example1_ref 11104 . T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:225,124,0,0 0/0:.:100:100:0:0%:63,37,0,0 -Example1_ref 11105 . G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:217,125,0,0 0/0:.:104:104:0:0%:67,37,0,0 -Example1_ref 11106 . A G . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=7.6546E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:219,139,0,1 0/0:.:110:110:0:0%:66,44,0,0 -Example1_ref 11107 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:220,135,0,0 0/0:.:113:113:0:0%:67,46,0,0 -Example1_ref 11108 . G . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:220,134,0,0 0/0:.:106:106:0:0%:65,41,0,0 -Example1_ref 11109 . G T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=2.3529E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:217,134,0,0 0/0:.:108:107:1:0.93%:64,43,0,1 -Example1_ref 11110 . G T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=5.776E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:350:2:0.57%:214,136,1,1 0/0:.:111:111:0:0%:65,46,0,0 -Example1_ref 11111 . A . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:225,141,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 11112 . G . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:220,137,0,0 0/0:.:115:114:0:0%:65,49,0,0 -Example1_ref 11113 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:222,139,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 11114 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:220,141,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 11115 . T G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.6042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:364:1:0.27%:227,137,0,1 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 11116 . T G . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=7.5891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:361:1:0.28%:225,136,0,1 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 11117 . C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:223,140,0,0 0/0:.:113:113:0:0%:62,51,0,0 -Example1_ref 11118 . T G . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=7.5155E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:362:1:0.28%:226,136,0,1 0/0:.:120:120:0:0%:64,56,0,0 -Example1_ref 11119 . T G . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=7.5157E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:229,130,0,1 0/0:.:119:119:0:0%:65,54,0,0 -Example1_ref 11120 . C A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=7.5368E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:226,131,1,0 0/0:.:117:117:0:0%:64,53,0,0 -Example1_ref 11121 . C A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.542E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:222,136,0,1 0/0:.:117:117:0:0%:64,53,0,0 -Example1_ref 11122 . T G . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=7.5359E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:366:1:0.27%:229,137,0,1 0/0:.:120:120:0:0%:64,56,0,0 -Example1_ref 11123 . C A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=7.541E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:367:1:0.27%:229,138,0,1 0/0:.:120:120:0:0%:64,56,0,0 -Example1_ref 11124 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:226,142,0,0 0/0:.:122:122:0:0%:65,57,0,0 -Example1_ref 11125 . A . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:226,145,0,0 0/0:.:120:120:0:0%:63,57,0,0 -Example1_ref 11126 . G A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.5826E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:366:1:0.27%:228,138,0,1 0/0:.:117:117:0:0%:60,57,0,0 -Example1_ref 11127 . C A . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=7.577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:368:1:0.27%:231,137,0,1 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 11128 . T G . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=7.6375E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:1:0.27%:234,140,0,1 0/0:.:116:116:0:0%:63,53,0,0 -Example1_ref 11129 . C A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=7.52E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:375:1:0.27%:235,140,0,1 0/0:.:124:124:0:0%:68,56,0,0 -Example1_ref 11130 . T G . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=7.5538E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:236,149,0,1 0/0:.:125:125:0:0%:68,57,0,0 -Example1_ref 11131 . G C . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=7.5148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:380:1:0.26%:230,150,0,1 0/0:.:126:126:0:0%:67,59,0,0 -Example1_ref 11132 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:382:0:0%:233,149,0,0 0/0:.:126:126:0:0%:68,58,0,0 -Example1_ref 11133 . A . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:235,150,0,0 0/0:.:126:126:0:0%:68,58,0,0 -Example1_ref 11134 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:232,147,0,0 0/0:.:125:125:0:0%:67,58,0,0 -Example1_ref 11135 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:230,149,0,0 0/0:.:125:125:0:0%:67,58,0,0 -Example1_ref 11136 . C A . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=4.2817E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:381:1:0.26%:231,150,0,1 0/0:.:123:122:1:0.81%:68,54,0,1 -Example1_ref 11137 . A . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:384:0:0%:233,151,0,0 0/0:.:128:128:0:0%:69,59,0,0 -Example1_ref 11138 . T G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=7.5348E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:378:1:0.26%:232,146,0,1 0/0:.:124:124:0:0%:67,57,0,0 -Example1_ref 11139 . T C . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=7.5195E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:384:1:0.26%:231,153,0,1 0/0:.:127:127:0:0%:68,59,0,0 -Example1_ref 11140 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:408:0:0%:254,154,0,0 0/0:.:141:141:0:0%:80,61,0,0 -Example1_ref 11141 . T . PASS DP=559;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:255,159,0,0 0/0:.:145:145:0:0%:81,64,0,0 -Example1_ref 11142 . C . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:419:0:0%:256,163,0,0 0/0:.:148:148:0:0%:82,66,0,0 -Example1_ref 11143 . T . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:257,163,0,0 0/0:.:147:147:0:0%:82,65,0,0 -Example1_ref 11144 . A ATTACT . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=7.3712E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:1:0.24%:251,163,1,0 0/0:.:148:148:0:0%:82,66,0,0 -Example1_ref 11145 . G A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=2.6825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:401:0:0%:240,161,0,0 0/0:.:147:146:1:0.68%:80,66,1,0 -Example1_ref 11146 . A . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:247,161,0,0 0/0:.:147:147:0:0%:82,65,0,0 -Example1_ref 11147 . T . PASS DP=565;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:253,164,0,0 0/0:.:148:148:0:0%:85,63,0,0 -Example1_ref 11148 . G . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:247,167,0,0 0/0:.:150:150:0:0%:85,65,0,0 -Example1_ref 11149 . T . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:252,160,0,0 0/0:.:148:148:0:0%:84,64,0,0 -Example1_ref 11150 . G T . PASS DP=559;SS=0;SSC=0;GPV=1E0;SPV=5.4023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:409:2:0.49%:248,161,1,1 0/0:.:148:148:0:0%:84,64,0,0 -Example1_ref 11151 . T . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:255,163,0,0 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 11152 . C . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:253,163,0,0 0/0:.:148:148:0:0%:85,63,0,0 -Example1_ref 11153 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:256,174,0,0 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 11154 . T . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:257,171,0,0 0/0:.:148:148:0:0%:84,64,0,0 -Example1_ref 11155 . C . PASS DP=583;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:255,175,0,0 0/0:.:153:153:0:0%:86,67,0,0 -Example1_ref 11156 . T A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.4194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:436:1:0.23%:257,179,0,1 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 11157 . G . PASS DP=583;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:255,176,0,0 0/0:.:152:152:0:0%:84,68,0,0 -Example1_ref 11158 . G A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.8625E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:424:4:0.93%:247,177,4,0 0/0:.:154:153:1:0.65%:85,68,0,1 -Example1_ref 11159 . T . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:258,172,0,0 0/0:.:154:154:0:0%:86,68,0,0 -Example1_ref 11160 . C T . PASS DP=587;SS=0;SSC=0;GPV=1E0;SPV=7.4106E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:256,178,0,1 0/0:.:152:152:0:0%:85,67,0,0 -Example1_ref 11161 . A . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:257,182,0,0 0/0:.:154:154:0:0%:87,67,0,0 -Example1_ref 11162 . G A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=2.5685E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:254,180,0,0 0/0:.:150:149:1:0.67%:83,66,1,0 -Example1_ref 11163 . A C . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=7.435E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:249,179,1,0 0/0:.:148:148:0:0%:82,66,0,0 -Example1_ref 11164 . A . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:247,184,0,0 0/0:.:149:149:0:0%:82,67,0,0 -Example1_ref 11165 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:252,184,0,0 0/0:.:152:152:0:0%:83,69,0,0 -Example1_ref 11166 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:252,183,0,0 0/0:.:153:153:0:0%:86,67,0,0 -Example1_ref 11167 . A C . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=7.3729E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:251,183,1,0 0/0:.:155:155:0:0%:86,69,0,0 -Example1_ref 11168 . G . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:262,183,0,0 0/0:.:156:156:0:0%:87,69,0,0 -Example1_ref 11169 . T C . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=7.4384E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:452:1:0.22%:266,186,1,0 0/0:.:156:156:0:0%:86,70,0,0 -Example1_ref 11170 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:263,185,0,0 0/0:.:158:158:0:0%:87,71,0,0 -Example1_ref 11171 . A T . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=7.4007E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:446:1:0.22%:262,184,0,1 0/0:.:157:157:0:0%:86,71,0,0 -Example1_ref 11172 . T A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=2.5616E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:269,184,0,0 0/0:.:156:155:1:0.64%:85,70,1,0 -Example1_ref 11173 . A . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:271,183,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 11174 . GA G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.4098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:451:1:0.22%:265,186,0,1 0/0:.:158:158:0:0%:89,69,0,0 -Example1_ref 11175 . A . PASS DP=607;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:0:0%:268,182,0,0 0/0:.:156:156:0:0%:88,68,0,0 -Example1_ref 11176 . T . PASS DP=608;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:270,183,0,0 0/0:.:155:155:0:0%:89,66,0,0 -Example1_ref 11177 . G . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:269,182,0,0 0/0:.:153:153:0:0%:87,66,0,0 -Example1_ref 11178 . A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:267,185,0,0 0/0:.:157:157:0:0%:89,68,0,0 -Example1_ref 11179 . A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:270,182,0,0 0/0:.:157:157:0:0%:88,69,0,0 -Example1_ref 11180 . A T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.451E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:455:1:0.22%:270,185,1,0 0/0:.:156:156:0:0%:88,68,0,0 -Example1_ref 11181 . C . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:268,183,0,0 0/0:.:160:160:0:0%:91,69,0,0 -Example1_ref 11182 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:271,185,0,0 0/0:.:160:160:0:0%:90,70,0,0 -Example1_ref 11183 . A T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=7.402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:452:1:0.22%:267,185,1,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 11184 . G T . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=2.6273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:261,188,0,0 0/0:.:160:159:1:0.62%:88,71,1,0 -Example1_ref 11185 . A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:264,187,0,0 0/0:.:158:158:0:0%:88,70,0,0 -Example1_ref 11186 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:262,186,0,0 0/0:.:158:158:0:0%:91,67,0,0 -Example1_ref 11187 . C . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:259,193,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 11188 . A T . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=7.3941E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:453:1:0.22%:267,186,1,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 11189 . G . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:263,186,0,0 0/0:.:156:156:0:0%:87,69,0,0 -Example1_ref 11190 . C T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.3934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:1:0.22%:264,186,1,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 11191 . A C . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.3878E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:460:1:0.22%:267,193,1,0 0/0:.:163:163:0:0%:92,71,0,0 -Example1_ref 11192 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:266,194,0,0 0/0:.:160:160:0:0%:90,70,0,0 -Example1_ref 11193 . C A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=7.4062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:453:1:0.22%:262,191,1,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 11194 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:264,193,0,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 11195 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:264,195,0,0 0/0:.:163:163:0:0%:92,71,0,0 -Example1_ref 11196 . C . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:260,194,0,0 0/0:.:158:158:0:0%:86,72,0,0 -Example1_ref 11197 . A G . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=4.508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:254,192,0,1 0/0:.:156:155:1:0.64%:83,72,0,1 -Example1_ref 11198 . A G . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=7.429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:250,194,0,1 0/0:.:154:154:0:0%:82,72,0,0 -Example1_ref 11199 . A . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:446:0:0%:251,195,0,0 0/0:.:155:155:0:0%:83,72,0,0 -Example1_ref 11200 . C G . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=7.4204E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:246,196,0,1 0/0:.:154:154:0:0%:81,73,0,0 -Example1_ref 11201 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:250,200,0,0 0/0:.:156:156:0:0%:81,75,0,0 -Example1_ref 11202 . T C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=7.392E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:248,196,0,1 0/0:.:157:157:0:0%:80,77,0,0 -Example1_ref 11203 . G . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:243,197,0,0 0/0:.:154:154:0:0%:80,74,0,0 -Example1_ref 11204 . G T . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=7.3854E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:238,196,1,0 0/0:.:154:154:0:0%:77,77,0,0 -Example1_ref 11205 . C . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:239,198,0,0 0/0:.:156:156:0:0%:80,76,0,0 -Example1_ref 11206 . A . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:243,205,0,0 0/0:.:157:157:0:0%:79,78,0,0 -Example1_ref 11207 . AC A . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=7.379E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:441:1:0.23%:239,202,1,0 0/0:.:157:157:0:0%:80,77,0,0 -Example1_ref 11208 . C . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:0:0%:235,204,0,0 0/0:.:157:157:0:0%:81,76,0,0 -Example1_ref 11209 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:239,203,0,0 0/0:.:158:157:0:0%:80,77,0,0 -Example1_ref 11210 . T A . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=2.597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:238,201,0,0 0/0:.:154:153:1:0.65%:79,74,0,1 -Example1_ref 11211 . C G . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.3411E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:438:1:0.23%:232,206,1,0 0/0:.:159:159:0:0%:80,79,0,0 -Example1_ref 11212 . A C . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=2.6238E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:238,209,0,0 0/0:.:159:158:1:0.63%:80,78,0,1 -Example1_ref 11213 . T TG . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=7.4376E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:237,209,1,0 0/0:.:154:154:0:0%:79,75,0,0 -Example1_ref 11214 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:237,207,0,0 0/0:.:154:154:0:0%:79,75,0,0 -Example1_ref 11215 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:237,213,0,0 0/0:.:156:156:0:0%:78,78,0,0 -Example1_ref 11216 . G . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:226,210,0,0 0/0:.:156:156:0:0%:78,78,0,0 -Example1_ref 11217 . C . PASS DP=587;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:222,216,0,0 0/0:.:149:149:0:0%:73,76,0,0 -Example1_ref 11218 . A . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:220,214,0,0 0/0:.:151:151:0:0%:73,78,0,0 -Example1_ref 11219 . A G . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=7.4306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:427:1:0.23%:216,211,1,0 0/0:.:148:148:0:0%:70,78,0,0 -Example1_ref 11220 . A T . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=7.4042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:1:0.24%:214,210,1,0 0/0:.:149:149:0:0%:71,78,0,0 -Example1_ref 11221 . A . PASS DP=579;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:216,213,0,0 0/0:.:150:150:0:0%:73,77,0,0 -Example1_ref 11222 . G A . PASS DP=571;SS=0;SSC=0;GPV=1E0;SPV=7.4035E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:421:1:0.24%:212,209,0,1 0/0:.:148:148:0:0%:72,76,0,0 -Example1_ref 11223 . C A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=7.4291E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:209,209,1,0 0/0:.:145:145:0:0%:71,74,0,0 -Example1_ref 11224 . A G . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=7.3989E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:420:1:0.24%:216,204,0,1 0/0:.:148:148:0:0%:74,74,0,0 -Example1_ref 11225 . A . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:212,209,0,0 0/0:.:148:148:0:0%:75,73,0,0 -Example1_ref 11226 . T G . PASS DP=573;SS=0;SSC=0;GPV=1E0;SPV=2.6224E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:0:0%:217,205,0,0 0/0:.:150:149:1:0.67%:75,74,0,1 -Example1_ref 11227 . T . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:0:0%:210,209,0,0 0/0:.:147:147:0:0%:74,73,0,0 -Example1_ref 11228 . G A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=7.4107E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:1:0.24%:203,211,1,0 0/0:.:145:145:0:0%:71,74,0,0 -Example1_ref 11229 . A T . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=7.3814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:1:0.24%:209,210,1,0 0/0:.:149:149:0:0%:72,77,0,0 -Example1_ref 11230 . G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:206,212,0,0 0/0:.:148:148:0:0%:72,76,0,0 -Example1_ref 11231 . A . PASS DP=570;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:209,212,0,0 0/0:.:149:149:0:0%:71,78,0,0 -Example1_ref 11232 . A C . PASS DP=575;SS=0;SSC=0;GPV=1E0;SPV=5.4085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:421:2:0.47%:210,211,1,1 0/0:.:152:152:0:0%:73,79,0,0 -Example1_ref 11233 . T A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.3883E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:429:1:0.23%:216,213,0,1 0/0:.:152:152:0:0%:74,78,0,0 -Example1_ref 11234 . G . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:214,210,0,0 0/0:.:150:150:0:0%:73,77,0,0 -Example1_ref 11235 . G C . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.3205E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:417:1:0.24%:204,213,1,0 0/0:.:153:153:0:0%:74,79,0,0 -Example1_ref 11236 . T . PASS DP=581;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:215,214,0,0 0/0:.:152:152:0:0%:75,77,0,0 -Example1_ref 11237 . T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:220,212,0,0 0/0:.:150:150:0:0%:76,74,0,0 -Example1_ref 11238 . A . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:218,214,0,0 0/0:.:154:154:0:0%:76,78,0,0 -Example1_ref 11239 . T C . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=2.5597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:220,216,0,0 0/0:.:150:149:1:0.67%:76,73,0,1 -Example1_ref 11240 . T A . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.3838E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:428:1:0.23%:215,213,1,0 0/0:.:152:152:0:0%:77,75,0,0 -Example1_ref 11241 . C . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:212,215,0,0 0/0:.:151:151:0:0%:74,77,0,0 -Example1_ref 11242 . A . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:217,216,0,0 0/0:.:152:152:0:0%:75,77,0,0 -Example1_ref 11243 . C A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=4.4828E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:1:0.24%:216,208,0,1 0/0:.:147:146:1:0.68%:74,72,0,1 -Example1_ref 11244 . C A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=4.5029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:421:1:0.24%:211,210,1,0 0/0:.:148:146:1:0.68%:72,74,0,1 -Example1_ref 11245 . T A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.386E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:420:1:0.24%:212,208,1,0 0/0:.:150:149:0:0%:74,75,0,0 -Example1_ref 11246 . G . PASS DP=575;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:421:0:0%:214,207,0,0 0/0:.:154:154:0:0%:79,75,0,0 -Example1_ref 11247 . T . PASS DP=587;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:221,209,0,0 0/0:.:157:157:0:0%:79,78,0,0 -Example1_ref 11248 . T . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:213,204,0,0 0/0:.:155:155:0:0%:79,76,0,0 -Example1_ref 11249 . C . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:205,205,0,0 0/0:.:154:154:0:0%:78,76,0,0 -Example1_ref 11250 . T C . PASS DP=557;SS=0;SSC=0;GPV=1E0;SPV=4.7428E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:403:1:0.25%:200,203,0,1 0/0:.:153:152:1:0.65%:76,76,0,1 -Example1_ref 11251 . A . PASS DP=565;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:201,209,0,0 0/0:.:155:155:0:0%:77,78,0,0 -Example1_ref 11252 . G . PASS DP=557;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:199,205,0,0 0/0:.:153:153:0:0%:75,78,0,0 -Example1_ref 11253 . G GACTGTCTCTT . PASS DP=551;SS=0;SSC=0;GPV=1E0;SPV=3.8388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:397:3:0.75%:190,207,3,0 0/0:.:150:150:0:0%:72,78,0,0 -Example1_ref 11254 . A ACTGTCTCT . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=4.7361E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:396:1:0.25%:190,206,1,0 0/0:.:150:149:1:0.67%:72,77,1,0 -Example1_ref 11255 . T . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:388:0:0%:201,187,0,0 0/0:.:145:144:0:0%:73,71,0,0 -Example1_ref 11256 . A . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:200,187,0,0 0/0:.:148:148:0:0%:77,71,0,0 -Example1_ref 11257 . C T . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=2.7342E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:380:0:0%:197,183,0,0 0/0:.:143:142:1:0.7%:73,69,1,0 -Example1_ref 11258 . G A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=5.2447E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:374:2:0.53%:193,181,1,1 0/0:.:143:143:0:0%:71,72,0,0 -Example1_ref 11259 . C A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=2.722E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:196,181,0,0 0/0:.:141:140:1:0.71%:73,67,0,1 -Example1_ref 11260 . A AC . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=7.2147E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:372:1:0.27%:190,182,1,0 0/0:.:144:144:0:0%:73,71,0,0 -Example1_ref 11261 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:190,180,0,0 0/0:.:140:140:0:0%:70,70,0,0 -Example1_ref 11262 . G A . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=7.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:367:1:0.27%:189,178,0,1 0/0:.:138:138:0:0%:70,68,0,0 -Example1_ref 11263 . C . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:364:0:0%:190,174,0,0 0/0:.:136:136:0:0%:70,66,0,0 -Example1_ref 11264 . T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:184,183,0,0 0/0:.:138:138:0:0%:70,68,0,0 -Example1_ref 11265 . C . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:185,175,0,0 0/0:.:137:137:0:0%:71,66,0,0 -Example1_ref 11266 . A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:364:0:0%:183,181,0,0 0/0:.:139:139:0:0%:70,69,0,0 -Example1_ref 11267 . A C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.2617E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:357:1:0.28%:175,182,1,0 0/0:.:135:135:0:0%:65,70,0,0 -Example1_ref 11268 . T . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:176,179,0,0 0/0:.:138:138:0:0%:69,69,0,0 -Example1_ref 11269 . T C . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=7.2008E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:174,180,1,0 0/0:.:138:138:0:0%:68,70,0,0 -Example1_ref 11270 . T . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:167,179,0,0 0/0:.:137:136:0:0%:65,71,0,0 -Example1_ref 11271 . T . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:167,179,0,0 0/0:.:137:137:0:0%:66,71,0,0 -Example1_ref 11272 . T . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:165,180,0,0 0/0:.:136:136:0:0%:65,71,0,0 -Example1_ref 11273 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:168,181,0,0 0/0:.:137:137:0:0%:66,71,0,0 -Example1_ref 11274 . A . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:167,186,0,0 0/0:.:136:136:0:0%:65,71,0,0 -Example1_ref 11275 . G GCTGTCTCT . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.1875E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:159,185,1,0 0/0:.:135:135:0:0%:63,72,0,0 -Example1_ref 11276 . A . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:161,184,0,0 0/0:.:132:132:0:0%:64,68,0,0 -Example1_ref 11277 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:163,183,0,0 0/0:.:134:134:0:0%:66,68,0,0 -Example1_ref 11278 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:169,182,0,0 0/0:.:135:135:0:0%:67,68,0,0 -Example1_ref 11279 . A . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:167,184,0,0 0/0:.:136:136:0:0%:67,69,0,0 -Example1_ref 11280 . T . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:172,181,0,0 0/0:.:137:137:0:0%:68,69,0,0 -Example1_ref 11281 . T TCTA . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=7.2708E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:168,180,0,1 0/0:.:131:131:0:0%:64,67,0,0 -Example1_ref 11282 . C . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:163,180,0,0 0/0:.:132:132:0:0%:64,68,0,0 -Example1_ref 11283 . A AG . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=5.2016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:340:2:0.58%:155,185,0,2 0/0:.:132:132:0:0%:64,68,0,0 -Example1_ref 11284 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:154,187,0,0 0/0:.:134:134:0:0%:65,69,0,0 -Example1_ref 11285 . CAA C . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=4.8718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:335:1:0.3%:149,186,1,0 0/0:.:133:132:1:0.75%:62,70,1,0 -Example1_ref 11286 . A . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:0:0%:143,182,0,0 0/0:.:133:133:0:0%:65,68,0,0 -Example1_ref 11287 . A C . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=2.9697E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:160,188,0,0 0/0:.:147:146:1:0.68%:76,70,1,0 -Example1_ref 11288 . CTA C . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=7.0316E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:333:1:0.3%:147,186,0,1 0/0:.:141:141:0:0%:71,70,0,0 -Example1_ref 11289 . T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:149,181,0,0 0/0:.:140:139:0:0%:71,68,0,0 -Example1_ref 11290 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:150,182,0,0 0/0:.:143:143:0:0%:73,70,0,0 -Example1_ref 11291 . T . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:153,181,0,0 0/0:.:141:141:0:0%:73,68,0,0 -Example1_ref 11292 . A . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:160,186,0,0 0/0:.:143:143:0:0%:75,68,0,0 -Example1_ref 11293 . T . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:160,180,0,0 0/0:.:141:141:0:0%:74,67,0,0 -Example1_ref 11294 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:156,177,0,0 0/0:.:142:142:0:0%:75,67,0,0 -Example1_ref 11295 . T TC . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=7.0576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:330:1:0.3%:159,171,1,0 0/0:.:138:138:0:0%:74,64,0,0 -Example1_ref 11296 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:0:0%:158,165,0,0 0/0:.:132:132:0:0%:74,58,0,0 -Example1_ref 11297 . G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:151,166,0,0 0/0:.:127:127:0:0%:70,57,0,0 -Example1_ref 11298 . C . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:155,161,0,0 0/0:.:130:129:0:0%:73,56,0,0 -Example1_ref 11299 . C A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=4.999E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:305:2:0.65%:152,153,0,2 0/0:.:127:127:0:0%:68,59,0,0 -Example1_ref 11300 . C . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:155,163,0,0 0/0:.:129:129:0:0%:73,56,0,0 -Example1_ref 11301 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:157,158,0,0 0/0:.:125:125:0:0%:72,53,0,0 -Example1_ref 11302 . T . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:154,160,0,0 0/0:.:125:125:0:0%:70,55,0,0 -Example1_ref 11303 . G . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:151,156,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 11304 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:150,153,0,0 0/0:.:123:123:0:0%:71,52,0,0 -Example1_ref 11305 . G T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=7.1462E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:147,160,1,0 0/0:.:123:123:0:0%:69,54,0,0 -Example1_ref 11306 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:149,160,0,0 0/0:.:125:125:0:0%:70,55,0,0 -Example1_ref 11307 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:159,159,0,0 0/0:.:124:124:0:0%:75,49,0,0 -Example1_ref 11308 . G T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=2.7955E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:155,162,0,0 0/0:.:123:122:1:0.81%:72,50,1,0 -Example1_ref 11309 . A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:152,162,0,0 0/0:.:121:121:0:0%:72,49,0,0 -Example1_ref 11310 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:156,164,0,0 0/0:.:120:120:0:0%:71,49,0,0 -Example1_ref 11311 . T . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:159,161,0,0 0/0:.:121:121:0:0%:71,50,0,0 -Example1_ref 11312 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:154,163,0,0 0/0:.:119:119:0:0%:70,49,0,0 -Example1_ref 11313 . T A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=2.7064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:159,159,0,0 0/0:.:118:117:1:0.85%:70,47,0,1 -Example1_ref 11314 . C T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=2.8111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:156,156,0,0 0/0:.:122:121:1:0.82%:72,49,0,1 -Example1_ref 11315 . A . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:156,156,0,0 0/0:.:121:121:0:0%:71,50,0,0 -Example1_ref 11316 . A . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:149,162,0,0 0/0:.:120:120:0:0%:70,50,0,0 -Example1_ref 11317 . T . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:155,155,0,0 0/0:.:123:123:0:0%:73,50,0,0 -Example1_ref 11318 . C . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:150,158,0,0 0/0:.:118:118:0:0%:69,49,0,0 -Example1_ref 11319 . C CCTGTCTCTT . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=7.2662E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:146,156,1,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 11320 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:150,155,0,0 0/0:.:117:117:0:0%:68,49,0,0 -Example1_ref 11321 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:152,158,0,0 0/0:.:116:116:0:0%:67,49,0,0 -Example1_ref 11322 . C . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:164,159,0,0 0/0:.:122:122:0:0%:74,48,0,0 -Example1_ref 11323 . T G . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=7.2336E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:318:1:0.31%:162,156,0,1 0/0:.:122:122:0:0%:75,47,0,0 -Example1_ref 11324 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:162,158,0,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 11325 . T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:163,160,0,0 0/0:.:126:126:0:0%:74,52,0,0 -Example1_ref 11326 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:162,161,0,0 0/0:.:123:123:0:0%:73,50,0,0 -Example1_ref 11327 . A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:167,162,0,0 0/0:.:124:124:0:0%:72,52,0,0 -Example1_ref 11328 . C CCTGTCTCTTAT . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.2506E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:326:1:0.31%:165,161,1,0 0/0:.:124:124:0:0%:73,51,0,0 -Example1_ref 11329 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:159,155,0,0 0/0:.:120:120:0:0%:70,50,0,0 -Example1_ref 11330 . C A . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.1814E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:144,148,0,1 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 11331 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:142,142,0,0 0/0:.:111:111:0:0%:64,47,0,0 -Example1_ref 11332 . G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:143,143,0,0 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 11333 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:145,143,0,0 0/0:.:114:114:0:0%:68,46,0,0 -Example1_ref 11334 . A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:145,145,0,0 0/0:.:115:115:0:0%:68,47,0,0 -Example1_ref 11335 . T G . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=7.2111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:286:1:0.35%:149,137,0,1 0/0:.:111:111:0:0%:66,45,0,0 -Example1_ref 11336 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:144,143,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 11337 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:149,141,0,0 0/0:.:114:114:0:0%:67,47,0,0 -Example1_ref 11338 . C T . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=3.7433E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:287:3:1.03%:147,140,2,1 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 11339 . A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:142,146,0,0 0/0:.:109:109:0:0%:63,46,0,0 -Example1_ref 11340 . A G . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=5.3508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:290:2:0.68%:142,148,2,0 0/0:.:107:107:0:0%:63,44,0,0 -Example1_ref 11341 . A . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:141,141,0,0 0/0:.:103:103:0:0%:63,40,0,0 -Example1_ref 11342 . G C . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=4.6547E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:142,143,1,0 0/0:.:105:104:1:0.95%:65,39,0,1 -Example1_ref 11343 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:140,138,0,0 0/0:.:106:106:0:0%:66,40,0,0 -Example1_ref 11344 . T C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=7.3402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:286:1:0.35%:145,141,1,0 0/0:.:104:104:0:0%:65,39,0,0 -Example1_ref 11345 . C . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:146,137,0,0 0/0:.:104:104:0:0%:66,38,0,0 -Example1_ref 11346 . A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:147,144,0,0 0/0:.:108:108:0:0%:66,42,0,0 -Example1_ref 11347 . A . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:146,146,0,0 0/0:.:108:108:0:0%:66,42,0,0 -Example1_ref 11348 . T . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:151,142,0,0 0/0:.:108:108:0:0%:66,42,0,0 -Example1_ref 11349 . A . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:146,141,0,0 0/0:.:105:105:0:0%:63,42,0,0 -Example1_ref 11350 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:151,140,0,0 0/0:.:107:107:0:0%:66,41,0,0 -Example1_ref 11351 . T . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:148,142,0,0 0/0:.:107:107:0:0%:66,41,0,0 -Example1_ref 11352 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:153,138,0,0 0/0:.:105:105:0:0%:67,38,0,0 -Example1_ref 11353 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:151,145,0,0 0/0:.:108:108:0:0%:67,41,0,0 -Example1_ref 11354 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:150,141,0,0 0/0:.:107:107:0:0%:66,41,0,0 -Example1_ref 11355 . G . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:147,141,0,0 0/0:.:101:101:0:0%:60,41,0,0 -Example1_ref 11356 . G T . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=7.4016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:1:0.35%:141,140,1,0 0/0:.:99:99:0:0%:59,40,0,0 -Example1_ref 11357 . A . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:142,142,0,0 0/0:.:105:105:0:0%:64,41,0,0 -Example1_ref 11358 . A . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:135,142,0,0 0/0:.:104:104:0:0%:63,41,0,0 -Example1_ref 11359 . T . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:142,136,0,0 0/0:.:105:105:0:0%:65,40,0,0 -Example1_ref 11360 . C . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:140,135,0,0 0/0:.:100:100:0:0%:62,38,0,0 -Example1_ref 11361 . C . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:139,138,0,0 0/0:.:104:104:0:0%:63,41,0,0 -Example1_ref 11362 . A . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:138,140,0,0 0/0:.:105:105:0:0%:65,40,0,0 -Example1_ref 11363 . A . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:133,143,0,0 0/0:.:105:105:0:0%:64,41,0,0 -Example1_ref 11364 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:135,144,0,0 0/0:.:100:100:0:0%:60,40,0,0 -Example1_ref 11365 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:136,142,0,0 0/0:.:106:106:0:0%:64,42,0,0 -Example1_ref 11366 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:136,142,0,0 0/0:.:108:108:0:0%:66,42,0,0 -Example1_ref 11367 . G T . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=7.3087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:134,142,0,1 0/0:.:102:102:0:0%:60,42,0,0 -Example1_ref 11368 . G T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=2.8363E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:278:2:0.71%:134,144,2,0 0/0:.:100:98:2:2%:57,41,2,0 -Example1_ref 11369 . A ATC . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=4.7705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:1:0.36%:133,146,1,0 0/0:.:107:106:1:0.93%:64,42,1,0 -Example1_ref 11370 . T TAAGAGACA . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=7.2821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:139,144,0,1 0/0:.:106:106:0:0%:65,41,0,0 -Example1_ref 11371 . G . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:139,142,0,0 0/0:.:102:102:0:0%:60,42,0,0 -Example1_ref 11372 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:143,141,0,0 0/0:.:106:106:0:0%:66,40,0,0 -Example1_ref 11373 . A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:143,142,0,0 0/0:.:106:106:0:0%:64,42,0,0 -Example1_ref 11374 . G . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:145,141,0,0 0/0:.:105:105:0:0%:63,42,0,0 -Example1_ref 11375 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:146,144,0,0 0/0:.:108:108:0:0%:66,42,0,0 -Example1_ref 11376 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:145,143,0,0 0/0:.:107:107:0:0%:66,41,0,0 -Example1_ref 11377 . T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:147,141,0,0 0/0:.:106:106:0:0%:64,42,0,0 -Example1_ref 11378 . G . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:143,140,0,0 0/0:.:104:104:0:0%:62,42,0,0 -Example1_ref 11379 . C . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:145,140,0,0 0/0:.:105:105:0:0%:64,41,0,0 -Example1_ref 11380 . T TCTG . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=2.7318E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:148,142,0,0 0/0:.:109:108:1:0.92%:65,43,1,0 -Example1_ref 11381 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:152,137,0,0 0/0:.:107:107:0:0%:66,41,0,0 -Example1_ref 11382 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:155,136,0,0 0/0:.:109:109:0:0%:67,42,0,0 -Example1_ref 11383 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:156,137,0,0 0/0:.:109:109:0:0%:68,41,0,0 -Example1_ref 11384 . T G . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=7.3449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:159,136,0,1 0/0:.:107:107:0:0%:66,41,0,0 -Example1_ref 11385 . T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:158,141,0,0 0/0:.:109:109:0:0%:68,41,0,0 -Example1_ref 11386 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:159,140,0,0 0/0:.:107:107:0:0%:66,41,0,0 -Example1_ref 11387 . A . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:154,141,0,0 0/0:.:109:109:0:0%:68,41,0,0 -Example1_ref 11388 . T G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.3284E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:159,139,0,1 0/0:.:109:109:0:0%:68,41,0,0 -Example1_ref 11389 . A . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:158,137,0,0 0/0:.:110:110:0:0%:69,41,0,0 -Example1_ref 11390 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:157,137,0,0 0/0:.:106:106:0:0%:66,40,0,0 -Example1_ref 11391 . C T . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=7.3766E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:156,127,1,0 0/0:.:101:101:0:0%:66,35,0,0 -Example1_ref 11392 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:162,130,0,0 0/0:.:106:106:0:0%:70,36,0,0 -Example1_ref 11393 . G . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:159,128,0,0 0/0:.:105:105:0:0%:69,36,0,0 -Example1_ref 11394 . C . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:159,128,0,0 0/0:.:102:102:0:0%:67,35,0,0 -Example1_ref 11395 . TA T . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=7.3902E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:1:0.35%:158,127,0,1 0/0:.:101:101:0:0%:67,34,0,0 -Example1_ref 11396 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:155,128,0,0 0/0:.:103:103:0:0%:67,36,0,0 -Example1_ref 11397 . G . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:168,130,0,0 0/0:.:105:105:0:0%:69,36,0,0 -Example1_ref 11398 . T . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:166,132,0,0 0/0:.:107:107:0:0%:70,37,0,0 -Example1_ref 11399 . G T . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=2.6566E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:166,127,0,0 0/0:.:106:105:1:0.94%:68,37,1,0 -Example1_ref 11400 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:169,135,0,0 0/0:.:106:106:0:0%:70,36,0,0 -Example1_ref 11401 . TG T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=7.3881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:164,132,1,0 0/0:.:105:105:0:0%:68,37,0,0 -Example1_ref 11402 . G T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=7.3657E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:160,127,0,1 0/0:.:103:103:0:0%:66,37,0,0 -Example1_ref 11403 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:163,132,0,0 0/0:.:101:101:0:0%:65,36,0,0 -Example1_ref 11404 . G T . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=5.9403E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:290:2:0.68%:161,129,2,0 0/0:.:102:101:1:0.98%:64,37,1,0 -Example1_ref 11405 . G C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=5.9692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:2:0.68%:166,127,0,2 0/0:.:105:103:1:0.96%:66,37,1,0 -Example1_ref 11406 . G T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=2.7823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:162,132,1,1 0/0:.:104:102:2:1.92%:66,36,1,1 -Example1_ref 11407 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:165,132,0,0 0/0:.:105:105:0:0%:69,36,0,0 -Example1_ref 11408 . T . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:169,135,0,0 0/0:.:107:107:0:0%:70,37,0,0 -Example1_ref 11409 . T TAAGAGACAG . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1.7361E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:169,134,0,1 0/0:.:110:108:2:1.82%:71,37,0,2 -Example1_ref 11410 . C A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=7.3571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:176,132,0,1 0/0:.:111:111:0:0%:72,39,0,0 -Example1_ref 11411 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:175,136,0,0 0/0:.:114:114:0:0%:74,40,0,0 -Example1_ref 11412 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:176,139,0,0 0/0:.:112:112:0:0%:72,40,0,0 -Example1_ref 11413 . C T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=7.4126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:317:1:0.31%:181,136,1,0 0/0:.:111:111:0:0%:72,39,0,0 -Example1_ref 11414 . T . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:184,139,0,0 0/0:.:116:116:0:0%:73,43,0,0 -Example1_ref 11415 . A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:182,139,0,0 0/0:.:116:116:0:0%:73,43,0,0 -Example1_ref 11416 . C . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:186,134,0,0 0/0:.:115:115:0:0%:72,43,0,0 -Example1_ref 11417 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:182,136,0,0 0/0:.:114:114:0:0%:72,42,0,0 -Example1_ref 11418 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:183,136,0,0 0/0:.:115:115:0:0%:72,43,0,0 -Example1_ref 11419 . G T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.3223E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:180,128,0,1 0/0:.:113:113:0:0%:73,40,0,0 -Example1_ref 11420 . G T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=2.5952E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:177,134,0,0 0/0:.:109:108:1:0.92%:68,40,1,0 -Example1_ref 11421 . C . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:182,129,0,0 0/0:.:113:113:0:0%:74,39,0,0 -Example1_ref 11422 . CA C . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=7.3697E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:185,125,1,0 0/0:.:111:111:0:0%:72,39,0,0 -Example1_ref 11423 . A T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=7.3721E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:316:1:0.32%:184,132,0,1 0/0:.:113:113:0:0%:73,40,0,0 -Example1_ref 11424 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:183,132,0,0 0/0:.:117:117:0:0%:76,41,0,0 -Example1_ref 11425 . G . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:183,133,0,0 0/0:.:111:111:0:0%:71,40,0,0 -Example1_ref 11426 . T A . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=4.6222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:313:1:0.32%:183,130,1,0 0/0:.:114:113:1:0.88%:74,39,0,1 -Example1_ref 11427 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:178,127,0,0 0/0:.:111:111:0:0%:73,38,0,0 -Example1_ref 11428 . A T . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=2.7059E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:181,129,0,0 0/0:.:115:114:1:0.87%:74,40,1,0 -Example1_ref 11429 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:181,128,0,0 0/0:.:112:112:0:0%:73,39,0,0 -Example1_ref 11430 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:182,130,0,0 0/0:.:114:114:0:0%:73,41,0,0 -Example1_ref 11431 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:178,137,0,0 0/0:.:114:114:0:0%:69,45,0,0 -Example1_ref 11432 . T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:182,139,0,0 0/0:.:119:119:0:0%:75,44,0,0 -Example1_ref 11433 . GT G . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=7.2523E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:321:1:0.31%:183,138,0,1 0/0:.:122:122:0:0%:78,44,0,0 -Example1_ref 11434 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:185,134,0,0 0/0:.:119:119:0:0%:77,42,0,0 -Example1_ref 11435 . T . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:185,125,0,0 0/0:.:123:123:0:0%:78,45,0,0 -Example1_ref 11436 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:177,137,0,0 0/0:.:120:120:0:0%:76,44,0,0 -Example1_ref 11437 . T . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:177,140,0,0 0/0:.:120:120:0:0%:76,44,0,0 -Example1_ref 11438 . G . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:180,143,0,0 0/0:.:120:120:0:0%:75,45,0,0 -Example1_ref 11439 . T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:183,143,0,0 0/0:.:123:123:0:0%:78,45,0,0 -Example1_ref 11440 . A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:180,142,0,0 0/0:.:123:123:0:0%:78,45,0,0 -Example1_ref 11441 . A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:179,143,0,0 0/0:.:121:121:0:0%:76,45,0,0 -Example1_ref 11442 . G T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=7.3256E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:1:0.32%:176,138,0,1 0/0:.:115:115:0:0%:70,45,0,0 -Example1_ref 11443 . G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:177,138,0,0 0/0:.:119:119:0:0%:74,45,0,0 -Example1_ref 11444 . A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:178,142,0,0 0/0:.:118:118:0:0%:73,45,0,0 -Example1_ref 11445 . A G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=2.6682E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:188,139,0,0 0/0:.:119:118:1:0.84%:74,44,0,1 -Example1_ref 11446 . C . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:189,141,0,0 0/0:.:121:121:0:0%:77,44,0,0 -Example1_ref 11447 . A . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:187,144,0,0 0/0:.:120:120:0:0%:76,44,0,0 -Example1_ref 11448 . T . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:190,141,0,0 0/0:.:122:122:0:0%:78,44,0,0 -Example1_ref 11449 . T G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.3128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:189,142,0,1 0/0:.:122:122:0:0%:78,44,0,0 -Example1_ref 11450 . G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:183,143,0,0 0/0:.:120:120:0:0%:76,44,0,0 -Example1_ref 11451 . GT G . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=7.3614E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:186,145,0,1 0/0:.:119:119:0:0%:74,45,0,0 -Example1_ref 11452 . T . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:0:0%:188,141,0,0 0/0:.:121:121:0:0%:76,45,0,0 -Example1_ref 11453 . G A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=2.6862E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:183,141,0,0 0/0:.:119:118:1:0.84%:74,44,1,0 -Example1_ref 11454 . A . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:184,141,0,0 0/0:.:124:124:0:0%:80,44,0,0 -Example1_ref 11455 . T . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:187,135,0,0 0/0:.:125:125:0:0%:82,43,0,0 -Example1_ref 11456 . C A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=5.1655E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:2:0.62%:189,134,0,2 0/0:.:127:127:0:0%:81,46,0,0 -Example1_ref 11457 . C . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:180,142,0,0 0/0:.:127:127:0:0%:81,46,0,0 -Example1_ref 11458 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:178,143,0,0 0/0:.:127:127:0:0%:82,45,0,0 -Example1_ref 11459 . T . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:180,140,0,0 0/0:.:127:127:0:0%:83,44,0,0 -Example1_ref 11460 . C . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:182,137,0,0 0/0:.:126:126:0:0%:82,44,0,0 -Example1_ref 11461 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:185,142,0,0 0/0:.:127:127:0:0%:82,45,0,0 -Example1_ref 11462 . G A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=7.2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:182,141,0,1 0/0:.:126:126:0:0%:81,45,0,0 -Example1_ref 11463 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:185,144,0,0 0/0:.:127:127:0:0%:83,44,0,0 -Example1_ref 11464 . T C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=7.1652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:181,139,0,1 0/0:.:127:127:0:0%:83,44,0,0 -Example1_ref 11465 . G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:182,143,0,0 0/0:.:123:123:0:0%:81,42,0,0 -Example1_ref 11466 . C A . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=5.1583E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:312:2:0.64%:175,137,2,0 0/0:.:123:123:0:0%:79,44,0,0 -Example1_ref 11467 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:179,145,0,0 0/0:.:124:124:0:0%:80,44,0,0 -Example1_ref 11468 . G . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:180,143,0,0 0/0:.:126:126:0:0%:81,45,0,0 -Example1_ref 11469 . C A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=7.1681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:181,142,0,1 0/0:.:128:128:0:0%:82,46,0,0 -Example1_ref 11470 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:178,146,0,0 0/0:.:130:130:0:0%:82,48,0,0 -Example1_ref 11471 . T . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:181,140,0,0 0/0:.:130:129:0:0%:81,48,0,0 -Example1_ref 11472 . T . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:177,143,0,0 0/0:.:125:125:0:0%:77,48,0,0 -Example1_ref 11473 . A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:179,148,0,0 0/0:.:126:126:0:0%:78,48,0,0 -Example1_ref 11474 . G . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:181,143,0,0 0/0:.:125:125:0:0%:79,46,0,0 -Example1_ref 11475 . C . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:177,145,0,0 0/0:.:121:121:0:0%:76,45,0,0 -Example1_ref 11476 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:177,148,0,0 0/0:.:123:123:0:0%:76,47,0,0 -Example1_ref 11477 . G . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:164,142,0,0 0/0:.:118:118:0:0%:71,47,0,0 -Example1_ref 11478 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:168,144,0,0 0/0:.:120:120:0:0%:72,48,0,0 -Example1_ref 11479 . T . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:168,146,0,0 0/0:.:119:119:0:0%:71,48,0,0 -Example1_ref 11480 . A C . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=7.2158E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:310:1:0.32%:164,146,1,0 0/0:.:120:120:0:0%:72,48,0,0 -Example1_ref 11481 . T G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=2.8306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:164,145,0,0 0/0:.:122:121:1:0.82%:73,48,0,1 -Example1_ref 11482 . T . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:159,144,0,0 0/0:.:120:120:0:0%:72,48,0,0 -Example1_ref 11483 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:160,147,0,0 0/0:.:118:118:0:0%:71,47,0,0 -Example1_ref 11484 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:157,147,0,0 0/0:.:116:116:0:0%:70,46,0,0 -Example1_ref 11485 . A . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:157,144,0,0 0/0:.:119:119:0:0%:73,46,0,0 -Example1_ref 11486 . A C . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=7.234E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:158,147,1,0 0/0:.:117:117:0:0%:72,45,0,0 -Example1_ref 11487 . G . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:161,144,0,0 0/0:.:118:117:0:0%:72,45,0,0 -Example1_ref 11488 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:299:0:0%:158,141,0,0 0/0:.:116:115:0:0%:68,47,0,0 -Example1_ref 11489 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:161,142,0,0 0/0:.:118:117:0:0%:70,47,0,0 -Example1_ref 11490 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:159,144,0,0 0/0:.:114:114:0:0%:67,47,0,0 -Example1_ref 11491 . T . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:0:0%:160,145,0,0 0/0:.:118:118:0:0%:70,48,0,0 -Example1_ref 11492 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:158,149,0,0 0/0:.:119:119:0:0%:71,48,0,0 -Example1_ref 11493 . T . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:160,147,0,0 0/0:.:118:118:0:0%:68,50,0,0 -Example1_ref 11494 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:154,151,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 11495 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:154,148,0,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 11496 . A AGCATCCAATTT . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=7.2906E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:147,148,1,0 0/0:.:110:110:0:0%:63,47,0,0 -Example1_ref 11497 . G . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:152,146,0,0 0/0:.:109:109:0:0%:65,44,0,0 -Example1_ref 11498 . G . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:142,141,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 11499 . C T . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=7.2549E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:148,147,0,1 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 11500 . G . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:139,145,0,0 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 11501 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:144,150,0,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 11502 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:141,149,0,0 0/0:.:111:111:0:0%:64,47,0,0 -Example1_ref 11503 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:141,149,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 11504 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:147,148,0,0 0/0:.:111:111:0:0%:64,47,0,0 -Example1_ref 11505 . T TGG . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=7.2208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:143,147,1,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 11506 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:145,151,0,0 0/0:.:113:113:0:0%:66,47,0,0 -Example1_ref 11507 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:148,146,0,0 0/0:.:112:112:0:0%:65,47,0,0 -Example1_ref 11508 . T G . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=7.2573E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:148,150,1,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 11509 . G . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:148,145,0,0 0/0:.:113:113:0:0%:65,48,0,0 -Example1_ref 11510 . G . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:149,145,0,0 0/0:.:111:111:0:0%:64,47,0,0 -Example1_ref 11511 . A T . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=2.7791E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:153,151,0,0 0/0:.:117:116:1:0.85%:66,50,1,0 -Example1_ref 11512 . C . PASS DP=392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:144,145,0,0 0/0:.:103:103:0:0%:61,42,0,0 -Example1_ref 11513 . C . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:144,151,0,0 0/0:.:106:106:0:0%:58,48,0,0 -Example1_ref 11514 . G T . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=7.3067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:143,149,1,0 0/0:.:108:108:0:0%:60,48,0,0 -Example1_ref 11515 . A C . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=7.2616E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:144,152,1,0 0/0:.:112:112:0:0%:62,50,0,0 -Example1_ref 11516 . A . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:140,150,0,0 0/0:.:112:112:0:0%:61,51,0,0 -Example1_ref 11517 . G . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:143,150,0,0 0/0:.:111:111:0:0%:61,50,0,0 -Example1_ref 11518 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:147,152,0,0 0/0:.:113:113:0:0%:64,49,0,0 -Example1_ref 11519 . G . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:148,148,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 11520 . T TTCCTGTC . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=2.823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:151,149,0,0 0/0:.:118:117:1:0.85%:66,51,1,0 -Example1_ref 11521 . T . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:151,148,0,0 0/0:.:118:118:0:0%:69,49,0,0 -Example1_ref 11522 . C . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:146,147,0,0 0/0:.:114:114:0:0%:66,48,0,0 -Example1_ref 11523 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:149,152,0,0 0/0:.:119:119:0:0%:64,55,0,0 -Example1_ref 11524 . T A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=2.7765E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:164,156,0,0 0/0:.:124:122:1:0.81%:69,53,0,1 -Example1_ref 11525 . T G . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=5.2259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:322:2:0.62%:165,157,1,1 0/0:.:124:124:0:0%:70,54,0,0 -Example1_ref 11526 . A . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:163,155,0,0 0/0:.:121:121:0:0%:68,53,0,0 -Example1_ref 11527 . T . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:161,153,0,0 0/0:.:119:119:0:0%:67,52,0,0 -Example1_ref 11528 . A . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:161,151,0,0 0/0:.:119:119:0:0%:69,50,0,0 -Example1_ref 11529 . G . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:160,149,0,0 0/0:.:119:119:0:0%:68,51,0,0 -Example1_ref 11530 . G T . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1.883E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:159,149,1,0 0/0:.:119:117:2:1.68%:65,52,2,0 -Example1_ref 11531 . A T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=7.1795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:158,149,1,0 0/0:.:121:121:0:0%:69,52,0,0 -Example1_ref 11532 . T TCTG . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=4.7963E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:158,147,1,0 0/0:.:118:117:1:0.85%:67,50,1,0 -Example1_ref 11533 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:160,140,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 11534 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:161,142,0,0 0/0:.:119:119:0:0%:68,51,0,0 -Example1_ref 11535 . T . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:159,143,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 11536 . G . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:152,141,0,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 11537 . A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:157,140,0,0 0/0:.:116:116:0:0%:66,50,0,0 -Example1_ref 11538 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:155,141,0,0 0/0:.:116:116:0:0%:65,51,0,0 -Example1_ref 11539 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:157,139,0,0 0/0:.:116:116:0:0%:66,50,0,0 -Example1_ref 11540 . CA C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=4.8539E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:299:1:0.33%:159,140,0,1 0/0:.:118:117:1:0.85%:67,50,0,1 -Example1_ref 11541 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:159,145,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 11542 . A G . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=2.7446E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:158,146,0,0 0/0:.:115:114:1:0.87%:65,49,0,1 -Example1_ref 11543 . G GAC . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=7.2356E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:300:1:0.33%:156,144,0,1 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 11544 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:159,144,0,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 11545 . A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:163,145,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 11546 . C A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=7.2813E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:161,146,0,1 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 11547 . C . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:155,147,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 11548 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:160,149,0,0 0/0:.:115:115:0:0%:64,51,0,0 -Example1_ref 11549 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:156,146,0,0 0/0:.:116:116:0:0%:65,51,0,0 -Example1_ref 11550 . G . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:150,147,0,0 0/0:.:115:115:0:0%:64,51,0,0 -Example1_ref 11551 . T . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:158,148,0,0 0/0:.:115:115:0:0%:64,51,0,0 -Example1_ref 11552 . G C . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=7.2616E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:149,147,1,0 0/0:.:112:112:0:0%:62,50,0,0 -Example1_ref 11553 . A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:155,143,0,0 0/0:.:114:114:0:0%:63,51,0,0 -Example1_ref 11554 . G . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:153,143,0,0 0/0:.:114:114:0:0%:63,51,0,0 -Example1_ref 11555 . T A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=4.706E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:162,142,0,1 0/0:.:114:113:1:0.88%:63,50,1,0 -Example1_ref 11556 . C A . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=4.738E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:156,142,1,0 0/0:.:114:112:1:0.88%:63,49,0,1 -Example1_ref 11557 . ATC A . PASS DP=413;SS=0;SSC=0;GPV=1E0;SPV=7.2573E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:298:1:0.33%:159,139,0,1 0/0:.:113:113:0:0%:63,50,0,0 -Example1_ref 11558 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:160,138,0,0 0/0:.:114:114:0:0%:64,50,0,0 -Example1_ref 11559 . C A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1.8323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:159,137,0,1 0/0:.:113:110:2:1.79%:61,49,1,1 -Example1_ref 11560 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:157,141,0,0 0/0:.:112:112:0:0%:62,50,0,0 -Example1_ref 11561 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:162,140,0,0 0/0:.:118:118:0:0%:68,50,0,0 -Example1_ref 11562 . T . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:0:0%:156,139,0,0 0/0:.:117:117:0:0%:66,51,0,0 -Example1_ref 11563 . T C . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:155,142,1,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 11564 . T . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:154,143,0,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 11565 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:157,146,0,0 0/0:.:117:117:0:0%:67,50,0,0 -Example1_ref 11566 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:151,147,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 11567 . G A . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=7.2439E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:149,147,1,0 0/0:.:113:113:0:0%:62,51,0,0 -Example1_ref 11568 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:152,147,0,0 0/0:.:118:118:0:0%:67,51,0,0 -Example1_ref 11569 . C . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:152,142,0,0 0/0:.:111:110:0:0%:61,49,0,0 -Example1_ref 11570 . T . PASS DP=402;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:153,141,0,0 0/0:.:108:108:0:0%:62,46,0,0 -Example1_ref 11571 . G A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=2.7436E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:147,136,0,0 0/0:.:107:106:1:0.93%:59,47,1,0 -Example1_ref 11572 . G T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1.8271E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:140,138,1,0 0/0:.:105:103:2:1.9%:59,44,2,0 -Example1_ref 11573 . G T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.2487E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:273:1:0.36%:131,142,1,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 11574 . C . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:149,141,0,0 0/0:.:110:110:0:0%:63,47,0,0 -Example1_ref 11575 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:153,142,0,0 0/0:.:111:111:0:0%:63,48,0,0 -Example1_ref 11576 . T . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:152,145,0,0 0/0:.:108:108:0:0%:63,45,0,0 -Example1_ref 11577 . C A . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=7.2637E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:291:1:0.34%:150,141,0,1 0/0:.:110:110:0:0%:63,47,0,0 -Example1_ref 11578 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:150,148,0,0 0/0:.:111:111:0:0%:64,47,0,0 -Example1_ref 11579 . G . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:146,147,0,0 0/0:.:106:106:0:0%:59,47,0,0 -Example1_ref 11580 . AC A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=7.2414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:1:0.34%:145,148,1,0 0/0:.:112:112:0:0%:64,48,0,0 -Example1_ref 11581 . C T . PASS DP=403;SS=0;SSC=0;GPV=1E0;SPV=7.2208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:1:0.34%:149,141,0,1 0/0:.:112:112:0:0%:66,46,0,0 -Example1_ref 11582 . C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:148,145,0,0 0/0:.:111:111:0:0%:63,48,0,0 -Example1_ref 11583 . C . PASS DP=408;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:149,145,0,0 0/0:.:114:114:0:0%:65,49,0,0 -Example1_ref 11584 . A C . PASS DP=414;SS=0;SSC=0;GPV=1E0;SPV=7.2222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:298:1:0.33%:151,147,1,0 0/0:.:115:115:0:0%:66,49,0,0 -Example1_ref 11585 . T C . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=2.8218E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:150,140,0,0 0/0:.:114:113:1:0.88%:66,47,1,0 -Example1_ref 11586 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:147,146,0,0 0/0:.:116:116:0:0%:67,49,0,0 -Example1_ref 11587 . T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:144,144,0,0 0/0:.:112:112:0:0%:63,49,0,0 -Example1_ref 11588 . T . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:143,144,0,0 0/0:.:110:110:0:0%:63,47,0,0 -Example1_ref 11589 . C CCTGTCTCTT . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=4.7424E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:142,145,1,0 0/0:.:109:108:1:0.92%:62,46,1,0 -Example1_ref 11590 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:141,137,0,0 0/0:.:104:104:0:0%:63,41,0,0 -Example1_ref 11591 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:141,137,0,0 0/0:.:104:104:0:0%:63,41,0,0 -Example1_ref 11592 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:135,137,0,0 0/0:.:104:104:0:0%:63,41,0,0 -Example1_ref 11593 . C A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=2.6984E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:144,132,0,0 0/0:.:102:101:1:0.98%:63,38,0,1 -Example1_ref 11594 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:141,134,0,0 0/0:.:104:104:0:0%:63,41,0,0 -Example1_ref 11595 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:145,134,0,0 0/0:.:105:105:0:0%:64,41,0,0 -Example1_ref 11596 . T . PASS DP=396;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:150,139,0,0 0/0:.:107:107:0:0%:63,44,0,0 -Example1_ref 11597 . T C . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=7.3265E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:145,139,0,1 0/0:.:104:104:0:0%:61,43,0,0 -Example1_ref 11598 . T C . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=2.6718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:147,141,0,0 0/0:.:105:104:1:0.95%:62,42,1,0 -Example1_ref 11599 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:146,141,0,0 0/0:.:107:107:0:0%:63,44,0,0 -Example1_ref 11600 . C A . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=7.2634E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:1:0.35%:144,139,0,1 0/0:.:107:107:0:0%:64,43,0,0 -Example1_ref 11601 . C . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:142,139,0,0 0/0:.:104:104:0:0%:61,43,0,0 -Example1_ref 11602 . AC A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=2.7692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:140,142,0,0 0/0:.:108:107:1:0.93%:63,44,1,0 -Example1_ref 11603 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:135,142,0,0 0/0:.:107:106:0:0%:61,45,0,0 -Example1_ref 11604 . A C . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=2.6933E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:134,140,0,0 0/0:.:101:100:1:0.99%:59,41,1,0 -Example1_ref 11605 . A AT . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=7.2944E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:274:1:0.36%:134,140,0,1 0/0:.:102:102:0:0%:60,42,0,0 -Example1_ref 11606 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:137,135,0,0 0/0:.:100:100:0:0%:61,39,0,0 -Example1_ref 11607 . C . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:134,139,0,0 0/0:.:102:102:0:0%:61,41,0,0 -Example1_ref 11608 . T . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:134,140,0,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 11609 . C . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:276:0:0%:134,142,0,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 11610 . A AG . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=7.2823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:276:275:1:0.36%:134,141,0,1 0/0:.:103:103:0:0%:59,44,0,0 -Example1_ref 11611 . G . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:135,139,0,0 0/0:.:103:103:0:0%:60,43,0,0 -Example1_ref 11612 . A . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:137,140,0,0 0/0:.:105:105:0:0%:61,44,0,0 -Example1_ref 11613 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:141,142,0,0 0/0:.:104:104:0:0%:60,44,0,0 -Example1_ref 11614 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:140,140,0,0 0/0:.:104:104:0:0%:61,43,0,0 -Example1_ref 11615 . A . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:140,139,0,0 0/0:.:102:102:0:0%:59,43,0,0 -Example1_ref 11616 . T G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=2.6823E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:142,139,0,0 0/0:.:103:102:1:0.97%:59,43,1,0 -Example1_ref 11617 . A . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:142,143,0,0 0/0:.:103:103:0:0%:60,43,0,0 -Example1_ref 11618 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:143,143,0,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 11619 . CT C . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=7.4005E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:278:1:0.36%:138,140,1,0 0/0:.:98:98:0:0%:57,41,0,0 -Example1_ref 11620 . T . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:269:0:0%:140,129,0,0 0/0:.:95:95:0:0%:59,36,0,0 -Example1_ref 11621 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:139,130,0,0 0/0:.:95:95:0:0%:58,37,0,0 -Example1_ref 11622 . C . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:140,123,0,0 0/0:.:94:94:0:0%:57,37,0,0 -Example1_ref 11623 . C . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:139,123,0,0 0/0:.:89:89:0:0%:55,34,0,0 -Example1_ref 11624 . A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:137,125,0,0 0/0:.:93:93:0:0%:57,36,0,0 -Example1_ref 11625 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:139,120,0,0 0/0:.:93:93:0:0%:58,35,0,0 -Example1_ref 11626 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:140,120,0,0 0/0:.:94:94:0:0%:58,36,0,0 -Example1_ref 11627 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:139,119,0,0 0/0:.:92:92:0:0%:58,34,0,0 -Example1_ref 11628 . T TA . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=5.3947E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:2:0.78%:133,120,2,0 0/0:.:92:92:0:0%:56,36,0,0 -Example1_ref 11629 . A . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:137,124,0,0 0/0:.:90:90:0:0%:54,36,0,0 -Example1_ref 11630 . A ACTGT . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=2.5989E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:138,124,0,0 0/0:.:92:91:1:1.09%:54,37,1,0 -Example1_ref 11631 . A . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:141,123,0,0 0/0:.:89:89:0:0%:53,36,0,0 -Example1_ref 11632 . A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:142,123,0,0 0/0:.:93:92:0:0%:54,38,0,0 -Example1_ref 11633 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:132,124,0,0 0/0:.:92:91:0:0%:53,38,0,0 -Example1_ref 11634 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:0:0%:136,125,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 11635 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:136,125,0,0 0/0:.:93:93:0:0%:54,39,0,0 -Example1_ref 11636 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:133,126,0,0 0/0:.:93:93:0:0%:54,39,0,0 -Example1_ref 11637 . T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:135,125,0,0 0/0:.:92:92:0:0%:53,39,0,0 -Example1_ref 11638 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:134,125,0,0 0/0:.:91:91:0:0%:52,39,0,0 -Example1_ref 11639 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:136,126,0,0 0/0:.:94:94:0:0%:53,41,0,0 -Example1_ref 11640 . C G . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=2.6554E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:0:0%:135,125,0,0 0/0:.:94:93:1:1.06%:53,40,0,1 -Example1_ref 11641 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:134,121,0,0 0/0:.:91:91:0:0%:52,39,0,0 -Example1_ref 11642 . G GA . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=2.6426E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:125,120,0,0 0/0:.:88:87:1:1.14%:50,37,0,1 -Example1_ref 11643 . C . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:131,122,0,0 0/0:.:88:88:0:0%:49,39,0,0 -Example1_ref 11644 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:131,123,0,0 0/0:.:88:88:0:0%:48,40,0,0 -Example1_ref 11645 . A G . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=2.5656E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:131,124,0,0 0/0:.:88:87:1:1.14%:49,38,0,1 -Example1_ref 11646 . G A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=4.4798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:130,121,1,0 0/0:.:87:86:1:1.15%:46,40,1,0 -Example1_ref 11647 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:132,119,0,0 0/0:.:89:89:0:0%:49,40,0,0 -Example1_ref 11648 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:132,122,0,0 0/0:.:86:86:0:0%:46,40,0,0 -Example1_ref 11649 . A ATG . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=7.3684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:132,119,0,1 0/0:.:90:90:0:0%:49,41,0,0 -Example1_ref 11650 . T . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:131,119,0,0 0/0:.:89:89:0:0%:50,39,0,0 -Example1_ref 11651 . G T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=7.3547E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:129,123,1,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 11652 . T . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:133,123,0,0 0/0:.:91:91:0:0%:52,39,0,0 -Example1_ref 11653 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:132,123,0,0 0/0:.:94:94:0:0%:53,41,0,0 -Example1_ref 11654 . T . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:0:0%:136,119,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 11655 . T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:141,120,0,0 0/0:.:96:96:0:0%:56,40,0,0 -Example1_ref 11656 . A T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.3184E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:1:0.38%:140,121,1,0 0/0:.:96:96:0:0%:55,41,0,0 -Example1_ref 11657 . C CCTGTCTCTTAT . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=2.6934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:135,120,0,0 0/0:.:94:93:1:1.06%:52,41,1,0 -Example1_ref 11658 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:139,116,0,0 0/0:.:91:91:0:0%:52,39,0,0 -Example1_ref 11659 . A T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=7.3178E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:134,116,1,0 0/0:.:92:92:0:0%:52,40,0,0 -Example1_ref 11660 . G . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:126,117,0,0 0/0:.:90:90:0:0%:52,38,0,0 -Example1_ref 11661 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:134,120,0,0 0/0:.:93:93:0:0%:53,40,0,0 -Example1_ref 11662 . C A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.2997E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:245:1:0.41%:131,114,0,1 0/0:.:91:91:0:0%:53,38,0,0 -Example1_ref 11663 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:133,114,0,0 0/0:.:91:91:0:0%:53,38,0,0 -Example1_ref 11664 . C A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.2941E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:137,110,1,0 0/0:.:92:92:0:0%:55,37,0,0 -Example1_ref 11665 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:140,116,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11666 . C A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=7.3469E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:140,111,0,1 0/0:.:91:91:0:0%:54,37,0,0 -Example1_ref 11667 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:137,116,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 11668 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:136,114,0,0 0/0:.:91:91:0:0%:52,39,0,0 -Example1_ref 11669 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:138,113,0,0 0/0:.:89:89:0:0%:50,39,0,0 -Example1_ref 11670 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:141,114,0,0 0/0:.:89:89:0:0%:51,38,0,0 -Example1_ref 11671 . C . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:140,110,0,0 0/0:.:88:88:0:0%:52,36,0,0 -Example1_ref 11672 . C . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:143,110,0,0 0/0:.:89:89:0:0%:52,37,0,0 -Example1_ref 11673 . C . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:144,109,0,0 0/0:.:87:87:0:0%:51,36,0,0 -Example1_ref 11674 . A . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:148,117,0,0 0/0:.:92:92:0:0%:53,39,0,0 -Example1_ref 11675 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:145,116,0,0 0/0:.:87:87:0:0%:52,35,0,0 -Example1_ref 11676 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:147,120,0,0 0/0:.:97:97:0:0%:55,42,0,0 -Example1_ref 11677 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:143,121,0,0 0/0:.:96:96:0:0%:55,41,0,0 -Example1_ref 11678 . T C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.3464E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:142,120,1,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 11679 . T . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:144,117,0,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 11680 . A G . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=7.3259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:145,117,1,0 0/0:.:96:96:0:0%:55,41,0,0 -Example1_ref 11681 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:135,111,0,0 0/0:.:92:92:0:0%:55,37,0,0 -Example1_ref 11682 . C . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:137,115,0,0 0/0:.:91:91:0:0%:54,37,0,0 -Example1_ref 11683 . TGG T . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=7.3219E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:140,116,1,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 11684 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:137,114,0,0 0/0:.:95:94:0:0%:56,38,0,0 -Example1_ref 11685 . G . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:136,113,0,0 0/0:.:92:92:0:0%:54,38,0,0 -Example1_ref 11686 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:133,115,0,0 0/0:.:93:93:0:0%:54,39,0,0 -Example1_ref 11687 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:137,114,0,0 0/0:.:93:93:0:0%:54,39,0,0 -Example1_ref 11688 . T TAAGAGACAG . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.3235E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:135,113,0,1 0/0:.:91:91:0:0%:54,37,0,0 -Example1_ref 11689 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:137,116,0,0 0/0:.:93:93:0:0%:55,38,0,0 -Example1_ref 11690 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:139,111,0,0 0/0:.:92:92:0:0%:56,36,0,0 -Example1_ref 11691 . T A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=7.3199E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:139,114,1,0 0/0:.:94:93:0:0%:55,38,0,0 -Example1_ref 11692 . C A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=7.2832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:138,113,1,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 11693 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:139,116,0,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 11694 . C CA . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=7.341E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:141,112,0,1 0/0:.:92:92:0:0%:55,37,0,0 -Example1_ref 11695 . A . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:139,116,0,0 0/0:.:95:95:0:0%:56,39,0,0 -Example1_ref 11696 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:0:0%:140,115,0,0 0/0:.:96:96:0:0%:57,39,0,0 -Example1_ref 11697 . A ACTGTCTCT . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=7.2571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:253:1:0.39%:138,115,1,0 0/0:.:96:96:0:0%:57,39,0,0 -Example1_ref 11698 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:134,117,0,0 0/0:.:91:91:0:0%:56,35,0,0 -Example1_ref 11699 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:136,118,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 11700 . C A . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=7.3353E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:132,112,0,1 0/0:.:89:89:0:0%:53,36,0,0 -Example1_ref 11701 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:131,117,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 11702 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:133,117,0,0 0/0:.:98:98:0:0%:56,42,0,0 -Example1_ref 11703 . T . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:132,110,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 11704 . G . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:135,116,0,0 0/0:.:94:94:0:0%:52,42,0,0 -Example1_ref 11705 . A ATCTG . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=7.1633E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:137,112,1,0 0/0:.:99:99:0:0%:57,42,0,0 -Example1_ref 11706 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:135,114,0,0 0/0:.:101:101:0:0%:58,43,0,0 -Example1_ref 11707 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:132,114,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 11708 . G . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:125,115,0,0 0/0:.:95:95:0:0%:55,40,0,0 -Example1_ref 11709 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:127,113,0,0 0/0:.:98:98:0:0%:55,43,0,0 -Example1_ref 11710 . A T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=7.071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:1:0.42%:124,114,1,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 11711 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:123,114,0,0 0/0:.:99:99:0:0%:56,43,0,0 -Example1_ref 11712 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:122,105,0,0 0/0:.:97:97:0:0%:56,41,0,0 -Example1_ref 11713 . G C . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=7.0253E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:121,100,1,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11714 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:119,101,0,0 0/0:.:92:92:0:0%:52,40,0,0 -Example1_ref 11715 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:117,102,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11716 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:123,103,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11717 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:120,100,0,0 0/0:.:90:90:0:0%:51,39,0,0 -Example1_ref 11718 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11719 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:121,103,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11720 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:114,101,0,0 0/0:.:91:91:0:0%:52,39,0,0 -Example1_ref 11721 . A G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=7.0588E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:113,102,1,0 0/0:.:90:90:0:0%:52,38,0,0 -Example1_ref 11722 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:120,100,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11723 . T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:120,101,0,0 0/0:.:92:92:0:0%:55,37,0,0 -Example1_ref 11724 . T . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:120,103,0,0 0/0:.:92:92:0:0%:53,39,0,0 -Example1_ref 11725 . A C . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=7.0846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:120,105,1,0 0/0:.:93:93:0:0%:54,39,0,0 -Example1_ref 11726 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:117,103,0,0 0/0:.:92:92:0:0%:54,38,0,0 -Example1_ref 11727 . C G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=7.0645E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:117,101,1,0 0/0:.:91:91:0:0%:54,37,0,0 -Example1_ref 11728 . C A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=6.9536E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:209:1:0.48%:110,99,0,1 0/0:.:92:92:0:0%:53,39,0,0 -Example1_ref 11729 . G T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=7.0627E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:112,101,1,0 0/0:.:89:89:0:0%:50,39,0,0 -Example1_ref 11730 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:117,103,0,0 0/0:.:94:94:0:0%:54,40,0,0 -Example1_ref 11731 . A . PASS DP=307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:113,103,0,0 0/0:.:91:91:0:0%:51,40,0,0 -Example1_ref 11732 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:117,101,0,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 11733 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:116,101,0,0 0/0:.:88:88:0:0%:51,37,0,0 -Example1_ref 11734 . C A . PASS DP=309;SS=0;SSC=0;GPV=1E0;SPV=7.0227E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:116,100,0,1 0/0:.:92:92:0:0%:52,40,0,0 -Example1_ref 11735 . T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:115,103,0,0 0/0:.:95:95:0:0%:54,41,0,0 -Example1_ref 11736 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:116,104,0,0 0/0:.:94:94:0:0%:55,39,0,0 -Example1_ref 11737 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:109,104,0,0 0/0:.:93:93:0:0%:51,42,0,0 -Example1_ref 11738 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:113,106,0,0 0/0:.:95:95:0:0%:53,42,0,0 -Example1_ref 11739 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:114,108,0,0 0/0:.:94:94:0:0%:51,43,0,0 -Example1_ref 11740 . G T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=6.9677E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:107,108,0,1 0/0:.:94:94:0:0%:52,42,0,0 -Example1_ref 11741 . G T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=4.9202E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:217:2:0.91%:102,115,2,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 11742 . A AG . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:227:1:0.44%:111,116,0,1 0/0:.:96:96:0:0%:52,44,0,0 -Example1_ref 11743 . C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:108,116,0,0 0/0:.:96:95:0:0%:52,43,0,0 -Example1_ref 11744 . A AG . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=4.9633E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:225:2:0.88%:111,114,0,2 0/0:.:95:95:0:0%:52,43,0,0 -Example1_ref 11745 . G . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:107,114,0,0 0/0:.:96:96:0:0%:53,43,0,0 -Example1_ref 11746 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:103,115,0,0 0/0:.:92:92:0:0%:49,43,0,0 -Example1_ref 11747 . A . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:101,117,0,0 0/0:.:93:93:0:0%:50,43,0,0 -Example1_ref 11748 . A . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:102,117,0,0 0/0:.:95:95:0:0%:51,44,0,0 -Example1_ref 11749 . G . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:106,115,0,0 0/0:.:97:97:0:0%:53,44,0,0 -Example1_ref 11750 . G . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:107,115,0,0 0/0:.:98:98:0:0%:52,46,0,0 -Example1_ref 11751 . TA T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=7.0062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:226:1:0.44%:107,119,1,0 0/0:.:97:97:0:0%:49,48,0,0 -Example1_ref 11752 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:106,120,0,0 0/0:.:95:95:0:0%:48,47,0,0 -Example1_ref 11753 . A . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:104,116,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 11754 . T . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:95:95:0:0%:49,46,0,0 -Example1_ref 11755 . T . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:105,110,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 11756 . C T . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=3.0065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:105,109,0,0 0/0:.:92:91:1:1.09%:49,42,0,1 -Example1_ref 11757 . T C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=3.0195E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:106,109,0,0 0/0:.:93:92:1:1.08%:48,44,1,0 -Example1_ref 11758 . C A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=5.133E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:1:0.45%:112,109,0,1 0/0:.:96:95:1:1.04%:52,43,0,1 -Example1_ref 11759 . C A . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=6.9707E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:213:1:0.47%:104,109,0,1 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 11760 . C A . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=6.9524E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:107,111,0,1 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 11761 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:107,113,0,0 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 11762 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:104,113,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 11763 . G T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=3.0696E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:108,111,0,0 0/0:.:97:96:1:1.03%:50,46,1,0 -Example1_ref 11764 . G . PASS DP=306;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:99,111,0,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 11765 . G GTC . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=5.1867E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:217:1:0.46%:103,114,1,0 0/0:.:96:95:1:1.04%:48,47,1,0 -Example1_ref 11766 . T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:106,114,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 11767 . T . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:105,114,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 11768 . G T . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=3.1132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:105,114,0,0 0/0:.:99:98:1:1.01%:50,48,1,0 -Example1_ref 11769 . C . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:105,111,0,0 0/0:.:97:97:0:0%:50,47,0,0 -Example1_ref 11770 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:108,116,0,0 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 11771 . C A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=6.8652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:1:0.46%:104,114,0,1 0/0:.:100:100:0:0%:50,50,0,0 -Example1_ref 11772 . A C . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=6.9062E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:103,117,1,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 11773 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:108,115,0,0 0/0:.:96:96:0:0%:48,48,0,0 -Example1_ref 11774 . G A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=6.9811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:103,118,1,0 0/0:.:96:96:0:0%:50,46,0,0 -Example1_ref 11775 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:106,115,0,0 0/0:.:95:95:0:0%:49,46,0,0 -Example1_ref 11776 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:104,116,0,0 0/0:.:99:99:0:0%:51,48,0,0 -Example1_ref 11777 . A C . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=6.8847E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:220:1:0.45%:106,114,1,0 0/0:.:100:100:0:0%:53,47,0,0 -Example1_ref 11778 . T TGTC . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=6.8536E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:108,111,1,0 0/0:.:101:101:0:0%:55,46,0,0 -Example1_ref 11779 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:110,113,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 11780 . C . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:113,112,0,0 0/0:.:104:104:0:0%:57,47,0,0 -Example1_ref 11781 . T . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:111,115,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 11782 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:111,115,0,0 0/0:.:106:106:0:0%:59,47,0,0 -Example1_ref 11783 . G . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:112,112,0,0 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 11784 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:222:0:0%:108,114,0,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 11785 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:106,113,0,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 11786 . A C . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=6.7089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:103,108,1,0 0/0:.:104:104:0:0%:58,46,0,0 -Example1_ref 11787 . A T . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=6.7302E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:104,107,1,0 0/0:.:103:103:0:0%:57,46,0,0 -Example1_ref 11788 . T G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=6.7732E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:106,105,1,0 0/0:.:101:101:0:0%:57,44,0,0 -Example1_ref 11789 . T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:106,110,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 11790 . C CCTG . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=3.3754E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:103,107,0,0 0/0:.:107:106:1:0.93%:57,49,1,0 -Example1_ref 11791 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:105,109,0,0 0/0:.:110:110:0:0%:59,51,0,0 -Example1_ref 11792 . C . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:0:0%:105,111,0,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 11793 . T TTATA . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=6.6771E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:103,109,1,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 11794 . C CTTAT . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=3.3437E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:104,109,0,0 0/0:.:107:106:1:0.93%:57,49,1,0 -Example1_ref 11795 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:105,116,0,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 11796 . C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:103,113,0,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 11797 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:101,115,0,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 11798 . G C . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:103,112,1,0 0/0:.:108:108:0:0%:57,51,0,0 -Example1_ref 11799 . G T . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=3.3231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:102,115,0,0 0/0:.:108:107:1:0.93%:57,50,1,0 -Example1_ref 11800 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:102,114,0,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 11801 . A . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:103,116,0,0 0/0:.:112:111:0:0%:58,53,0,0 -Example1_ref 11802 . T A . PASS DP=327;SS=0;SSC=0;GPV=1E0;SPV=6.6564E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:216:1:0.46%:101,115,0,1 0/0:.:110:109:0:0%:56,53,0,0 -Example1_ref 11803 . C . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:103,119,0,0 0/0:.:113:113:0:0%:58,55,0,0 -Example1_ref 11804 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:101,124,0,0 0/0:.:114:114:0:0%:56,58,0,0 -Example1_ref 11805 . G A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=3.5191E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:100,121,0,0 0/0:.:121:119:1:0.83%:60,59,1,0 -Example1_ref 11806 . A AC . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=3.4795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:100,123,0,0 0/0:.:120:118:1:0.84%:58,60,0,1 -Example1_ref 11807 . A . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:97,124,0,0 0/0:.:115:115:0:0%:54,61,0,0 -Example1_ref 11808 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:94,124,0,0 0/0:.:120:120:0:0%:58,62,0,0 -Example1_ref 11809 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:103,125,0,0 0/0:.:120:119:0:0%:57,62,0,0 -Example1_ref 11810 . G . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:105,124,0,0 0/0:.:125:125:0:0%:60,65,0,0 -Example1_ref 11811 . C T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=3.4483E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:105,123,0,0 0/0:.:120:119:1:0.83%:56,63,1,0 -Example1_ref 11812 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:102,125,0,0 0/0:.:123:123:0:0%:59,64,0,0 -Example1_ref 11813 . A . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:106,128,0,0 0/0:.:123:123:0:0%:58,65,0,0 -Example1_ref 11814 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:108,127,0,0 0/0:.:123:123:0:0%:58,65,0,0 -Example1_ref 11815 . A . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:121:121:0:0%:56,65,0,0 -Example1_ref 11816 . G . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:101,125,0,0 0/0:.:120:120:0:0%:57,63,0,0 -Example1_ref 11817 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:103,121,0,0 0/0:.:120:120:0:0%:56,64,0,0 -Example1_ref 11818 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:106,125,0,0 0/0:.:119:119:0:0%:56,63,0,0 -Example1_ref 11819 . G . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:105,126,0,0 0/0:.:120:120:0:0%:57,63,0,0 -Example1_ref 11820 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:103,124,0,0 0/0:.:117:117:0:0%:54,63,0,0 -Example1_ref 11821 . A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:97,128,0,0 0/0:.:116:116:0:0%:53,63,0,0 -Example1_ref 11822 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:101,128,0,0 0/0:.:118:118:0:0%:54,64,0,0 -Example1_ref 11823 . T . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:104,125,0,0 0/0:.:118:118:0:0%:54,64,0,0 -Example1_ref 11824 . G . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:105,126,0,0 0/0:.:119:119:0:0%:56,63,0,0 -Example1_ref 11825 . T . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:103,123,0,0 0/0:.:119:119:0:0%:56,63,0,0 -Example1_ref 11826 . T . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:103,124,0,0 0/0:.:118:118:0:0%:56,62,0,0 -Example1_ref 11827 . A C . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=3.4985E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:103,120,0,0 0/0:.:120:119:1:0.83%:56,63,1,0 -Example1_ref 11828 . G . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:104,123,0,0 0/0:.:118:118:0:0%:55,63,0,0 -Example1_ref 11829 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:105,124,0,0 0/0:.:117:117:0:0%:55,62,0,0 -Example1_ref 11830 . T . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:105,122,0,0 0/0:.:118:118:0:0%:57,61,0,0 -Example1_ref 11831 . A . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:104,121,0,0 0/0:.:119:119:0:0%:57,62,0,0 -Example1_ref 11832 . C . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:104,122,0,0 0/0:.:117:117:0:0%:56,61,0,0 -Example1_ref 11833 . G . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:100,121,0,0 0/0:.:116:116:0:0%:55,61,0,0 -Example1_ref 11834 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:101,123,0,0 0/0:.:115:115:0:0%:54,61,0,0 -Example1_ref 11835 . C . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:104,121,0,0 0/0:.:112:112:0:0%:55,57,0,0 -Example1_ref 11836 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:101,121,0,0 0/0:.:115:115:0:0%:54,61,0,0 -Example1_ref 11837 . A T . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1.1652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:100,119,0,0 0/0:.:114:112:2:1.75%:51,61,2,0 -Example1_ref 11838 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:101,119,0,0 0/0:.:113:113:0:0%:53,60,0,0 -Example1_ref 11839 . A . PASS DP=328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:98,121,0,0 0/0:.:109:109:0:0%:51,58,0,0 -Example1_ref 11840 . T . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:99,118,0,0 0/0:.:114:114:0:0%:54,60,0,0 -Example1_ref 11841 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:99,118,0,0 0/0:.:113:113:0:0%:52,61,0,0 -Example1_ref 11842 . T . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:95,116,0,0 0/0:.:106:106:0:0%:51,55,0,0 -Example1_ref 11843 . C A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=3.3846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:95,120,0,0 0/0:.:110:109:1:0.91%:50,59,0,1 -Example1_ref 11844 . T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:89,121,0,0 0/0:.:111:111:0:0%:49,62,0,0 -Example1_ref 11845 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:111:111:0:0%:49,62,0,0 -Example1_ref 11846 . A . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:89,122,0,0 0/0:.:110:110:0:0%:48,62,0,0 -Example1_ref 11847 . T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:92,122,0,0 0/0:.:109:109:0:0%:49,60,0,0 -Example1_ref 11848 . T A . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=6.6346E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:88,118,0,1 0/0:.:105:105:0:0%:47,58,0,0 -Example1_ref 11849 . C . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:85,123,0,0 0/0:.:109:109:0:0%:48,61,0,0 -Example1_ref 11850 . G . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:88,121,0,0 0/0:.:106:106:0:0%:47,59,0,0 -Example1_ref 11851 . G . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:79,120,0,0 0/0:.:106:106:0:0%:48,58,0,0 -Example1_ref 11852 . G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:82,121,0,0 0/0:.:107:107:0:0%:47,60,0,0 -Example1_ref 11853 . T . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:90,122,0,0 0/0:.:107:107:0:0%:48,59,0,0 -Example1_ref 11854 . TG T . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=6.6773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:208:1:0.48%:87,121,0,1 0/0:.:104:104:0:0%:46,58,0,0 -Example1_ref 11855 . G . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:90,117,0,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 11856 . G A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=5.6487E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:1:0.49%:86,117,1,0 0/0:.:106:104:1:0.95%:46,58,1,0 -Example1_ref 11857 . C . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:90,124,0,0 0/0:.:109:109:0:0%:48,61,0,0 -Example1_ref 11858 . A ACTG . PASS DP=334;SS=0;SSC=0;GPV=1E0;SPV=6.6168E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:93,127,1,0 0/0:.:113:113:0:0%:49,64,0,0 -Example1_ref 11859 . T G . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=6.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:94,125,0,1 0/0:.:110:110:0:0%:46,64,0,0 -Example1_ref 11860 . A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:106,125,0,0 0/0:.:108:108:0:0%:45,63,0,0 -Example1_ref 11861 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:102,122,0,0 0/0:.:106:105:0:0%:43,62,0,0 -Example1_ref 11862 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:105,125,0,0 0/0:.:112:112:0:0%:46,66,0,0 -Example1_ref 11863 . T . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:105,127,0,0 0/0:.:107:107:0:0%:43,64,0,0 -Example1_ref 11864 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:221:0:0%:102,119,0,0 0/0:.:102:102:0:0%:41,61,0,0 -Example1_ref 11865 . G A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=6.8693E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:225:1:0.44%:99,126,1,0 0/0:.:103:103:0:0%:39,64,0,0 -Example1_ref 11866 . A ACAG . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=6.904E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:222:1:0.45%:99,123,0,1 0/0:.:100:100:0:0%:38,62,0,0 -Example1_ref 11867 . G . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:98,122,0,0 0/0:.:101:101:0:0%:40,61,0,0 -Example1_ref 11868 . G . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:102,123,0,0 0/0:.:101:101:0:0%:41,60,0,0 -Example1_ref 11869 . A . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:96,116,0,0 0/0:.:98:98:0:0%:38,60,0,0 -Example1_ref 11870 . G . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:104,114,0,0 0/0:.:99:97:0:0%:40,57,0,0 -Example1_ref 11871 . G . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:106,118,0,0 0/0:.:101:101:0:0%:39,62,0,0 -Example1_ref 11872 . A . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:105,116,0,0 0/0:.:103:103:0:0%:40,63,0,0 -Example1_ref 11873 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:110,116,0,0 0/0:.:98:98:0:0%:40,58,0,0 -Example1_ref 11874 . T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:110,113,0,0 0/0:.:103:103:0:0%:40,63,0,0 -Example1_ref 11875 . G . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:119,116,0,0 0/0:.:101:101:0:0%:40,61,0,0 -Example1_ref 11876 . A . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:123,118,0,0 0/0:.:108:108:0:0%:45,63,0,0 -Example1_ref 11877 . C . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:126,116,0,0 0/0:.:110:110:0:0%:46,64,0,0 -Example1_ref 11878 . A . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:125,119,0,0 0/0:.:109:109:0:0%:46,63,0,0 -Example1_ref 11879 . T . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:121,115,0,0 0/0:.:104:104:0:0%:45,59,0,0 -Example1_ref 11880 . A . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:121,116,0,0 0/0:.:111:111:0:0%:46,65,0,0 -Example1_ref 11881 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:125,117,0,0 0/0:.:108:108:0:0%:46,62,0,0 -Example1_ref 11882 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:125,115,0,0 0/0:.:107:107:0:0%:45,62,0,0 -Example1_ref 11883 . G A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=6.9412E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:235:1:0.42%:121,114,0,1 0/0:.:104:104:0:0%:43,61,0,0 -Example1_ref 11884 . T . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:123,113,0,0 0/0:.:105:105:0:0%:43,62,0,0 -Example1_ref 11885 . T . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:121,116,0,0 0/0:.:104:104:0:0%:42,62,0,0 -Example1_ref 11886 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:104:104:0:0%:42,62,0,0 -Example1_ref 11887 . A . PASS DP=347;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:125,117,0,0 0/0:.:105:105:0:0%:43,62,0,0 -Example1_ref 11888 . T A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=2.9825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:125,115,0,0 0/0:.:102:101:1:0.98%:43,58,0,1 -Example1_ref 11889 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:100:100:0:0%:41,59,0,0 -Example1_ref 11890 . G GCTGTCTCTTAT . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=7.0206E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:237:1:0.42%:121,116,1,0 0/0:.:101:101:0:0%:41,60,0,0 -Example1_ref 11891 . A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:232:0:0%:120,112,0,0 0/0:.:102:102:0:0%:42,60,0,0 -Example1_ref 11892 . G . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:122,109,0,0 0/0:.:100:100:0:0%:43,57,0,0 -Example1_ref 11893 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:114,111,0,0 0/0:.:97:97:0:0%:39,58,0,0 -Example1_ref 11894 . A . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:119,114,0,0 0/0:.:105:105:0:0%:42,63,0,0 -Example1_ref 11895 . A . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:119,112,0,0 0/0:.:102:102:0:0%:41,61,0,0 -Example1_ref 11896 . A . PASS DP=340;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:121,115,0,0 0/0:.:104:104:0:0%:42,62,0,0 -Example1_ref 11897 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:122,116,0,0 0/0:.:105:105:0:0%:42,63,0,0 -Example1_ref 11898 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:122,114,0,0 0/0:.:102:102:0:0%:41,61,0,0 -Example1_ref 11899 . C . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:123,116,0,0 0/0:.:106:106:0:0%:44,62,0,0 -Example1_ref 11900 . A . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:124,119,0,0 0/0:.:111:111:0:0%:44,67,0,0 -Example1_ref 11901 . G . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:124,118,0,0 0/0:.:111:111:0:0%:44,67,0,0 -Example1_ref 11902 . T . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:125,118,0,0 0/0:.:110:110:0:0%:43,67,0,0 -Example1_ref 11903 . A C . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=6.9468E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:127,120,0,1 0/0:.:109:109:0:0%:43,66,0,0 -Example1_ref 11904 . A . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:126,121,0,0 0/0:.:110:110:0:0%:42,68,0,0 -Example1_ref 11905 . T . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:131,120,0,0 0/0:.:108:108:0:0%:42,66,0,0 -Example1_ref 11906 . TATG T . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=6.9529E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:129,121,1,0 0/0:.:110:110:0:0%:42,68,0,0 -Example1_ref 11907 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:131,122,0,0 0/0:.:109:109:0:0%:41,68,0,0 -Example1_ref 11908 . T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:130,115,0,0 0/0:.:111:111:0:0%:43,68,0,0 -Example1_ref 11909 . G A . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=6.882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:244:1:0.41%:125,119,0,1 0/0:.:111:111:0:0%:43,68,0,0 -Example1_ref 11910 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:140,120,0,0 0/0:.:114:114:0:0%:47,67,0,0 -Example1_ref 11911 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:140,118,0,0 0/0:.:112:112:0:0%:46,66,0,0 -Example1_ref 11912 . C . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:139,120,0,0 0/0:.:110:110:0:0%:47,63,0,0 -Example1_ref 11913 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:139,121,0,0 0/0:.:116:116:0:0%:47,69,0,0 -Example1_ref 11914 . A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:140,121,0,0 0/0:.:116:116:0:0%:47,69,0,0 -Example1_ref 11915 . GC G . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=6.9355E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:257:1:0.39%:138,119,0,1 0/0:.:114:114:0:0%:49,65,0,0 -Example1_ref 11916 . C A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=6.9149E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:259:1:0.38%:142,117,0,1 0/0:.:116:116:0:0%:49,67,0,0 -Example1_ref 11917 . A T . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=6.9744E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:271:1:0.37%:143,128,0,1 0/0:.:118:118:0:0%:47,71,0,0 -Example1_ref 11918 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:145,123,0,0 0/0:.:112:112:0:0%:50,62,0,0 -Example1_ref 11919 . A AG . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=5.1989E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:144,124,0,1 0/0:.:119:118:1:0.84%:49,69,0,1 -Example1_ref 11920 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:152,129,0,0 0/0:.:126:126:0:0%:55,71,0,0 -Example1_ref 11921 . T . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:154,129,0,0 0/0:.:123:123:0:0%:56,67,0,0 -Example1_ref 11922 . A C . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=6.9882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:161,135,1,0 0/0:.:128:128:0:0%:56,72,0,0 -Example1_ref 11923 . T A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=4.8817E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:293:2:0.68%:162,131,0,2 0/0:.:127:127:0:0%:56,71,0,0 -Example1_ref 11924 . G GAGAC . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=6.9905E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:161,133,0,1 0/0:.:127:127:0:0%:56,71,0,0 -Example1_ref 11925 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:163,137,0,0 0/0:.:126:126:0:0%:56,70,0,0 -Example1_ref 11926 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:159,139,0,0 0/0:.:126:126:0:0%:56,70,0,0 -Example1_ref 11927 . A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:167,148,0,0 0/0:.:130:130:0:0%:57,73,0,0 -Example1_ref 11928 . C CCTG . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=2.8929E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:166,146,0,0 0/0:.:127:126:1:0.79%:55,71,1,0 -Example1_ref 11929 . AC A . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.032E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:164,143,0,1 0/0:.:130:130:0:0%:56,74,0,0 -Example1_ref 11930 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:165,142,0,0 0/0:.:127:126:0:0%:56,70,0,0 -Example1_ref 11931 . TA T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=7.0548E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:1:0.32%:168,140,1,0 0/0:.:129:129:0:0%:57,72,0,0 -Example1_ref 11932 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:172,148,0,0 0/0:.:130:130:0:0%:55,75,0,0 -Example1_ref 11933 . A . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:170,147,0,0 0/0:.:132:132:0:0%:56,76,0,0 -Example1_ref 11934 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:176,147,0,0 0/0:.:131:131:0:0%:55,76,0,0 -Example1_ref 11935 . T . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:175,148,0,0 0/0:.:134:133:0:0%:57,76,0,0 -Example1_ref 11936 . A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:176,147,0,0 0/0:.:130:130:0:0%:53,77,0,0 -Example1_ref 11937 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:172,151,0,0 0/0:.:131:131:0:0%:55,76,0,0 -Example1_ref 11938 . G T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.1586E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:324:1:0.31%:170,154,1,0 0/0:.:129:129:0:0%:54,75,0,0 -Example1_ref 11939 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:173,157,0,0 0/0:.:132:132:0:0%:55,77,0,0 -Example1_ref 11940 . C . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:179,149,0,0 0/0:.:132:132:0:0%:55,77,0,0 -Example1_ref 11941 . T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:179,149,0,0 0/0:.:124:124:0:0%:54,70,0,0 -Example1_ref 11942 . T A . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=7.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:176,151,1,0 0/0:.:123:123:0:0%:54,69,0,0 -Example1_ref 11943 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:173,154,0,0 0/0:.:131:131:0:0%:55,76,0,0 -Example1_ref 11944 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:175,155,0,0 0/0:.:128:128:0:0%:54,74,0,0 -Example1_ref 11945 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:174,153,0,0 0/0:.:131:131:0:0%:54,77,0,0 -Example1_ref 11946 . G . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:175,153,0,0 0/0:.:127:127:0:0%:53,74,0,0 -Example1_ref 11947 . A . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:177,157,0,0 0/0:.:137:137:0:0%:56,81,0,0 -Example1_ref 11948 . C . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:172,156,0,0 0/0:.:128:128:0:0%:53,75,0,0 -Example1_ref 11949 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:171,155,0,0 0/0:.:131:131:0:0%:50,81,0,0 -Example1_ref 11950 . A G . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=7.1648E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:173,152,0,1 0/0:.:129:129:0:0%:51,78,0,0 -Example1_ref 11951 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:169,154,0,0 0/0:.:131:131:0:0%:51,80,0,0 -Example1_ref 11952 . T G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=2.8194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:172,154,0,0 0/0:.:128:127:1:0.78%:52,75,1,0 -Example1_ref 11953 . T A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=5.0931E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:2:0.61%:170,155,2,0 0/0:.:131:131:0:0%:51,80,0,0 -Example1_ref 11954 . G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:175,157,0,0 0/0:.:132:132:0:0%:51,81,0,0 -Example1_ref 11955 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:177,157,0,0 0/0:.:134:134:0:0%:54,80,0,0 -Example1_ref 11956 . A . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:0:0%:170,157,0,0 0/0:.:135:135:0:0%:54,81,0,0 -Example1_ref 11957 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:170,153,0,0 0/0:.:133:133:0:0%:52,81,0,0 -Example1_ref 11958 . G A . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=7.0769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:321:1:0.31%:170,151,0,1 0/0:.:133:133:0:0%:55,78,0,0 -Example1_ref 11959 . C A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=2.8289E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:175,152,0,0 0/0:.:129:128:1:0.78%:51,77,0,1 -Example1_ref 11960 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:174,155,0,0 0/0:.:129:129:0:0%:51,78,0,0 -Example1_ref 11961 . A . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:174,155,0,0 0/0:.:134:134:0:0%:54,80,0,0 -Example1_ref 11962 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:176,157,0,0 0/0:.:131:131:0:0%:53,78,0,0 -Example1_ref 11963 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:173,164,0,0 0/0:.:133:133:0:0%:52,81,0,0 -Example1_ref 11964 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:173,170,0,0 0/0:.:133:133:0:0%:51,82,0,0 -Example1_ref 11965 . A . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:175,167,0,0 0/0:.:131:131:0:0%:49,82,0,0 -Example1_ref 11966 . A G . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=4.8277E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:169,166,0,1 0/0:.:131:130:1:0.76%:51,79,1,0 -Example1_ref 11967 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:170,167,0,0 0/0:.:129:129:0:0%:49,80,0,0 -Example1_ref 11968 . C A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=7.2078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:1:0.3%:164,168,1,0 0/0:.:129:129:0:0%:47,82,0,0 -Example1_ref 11969 . A AG . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=7.2727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:343:1:0.29%:173,170,0,1 0/0:.:129:129:0:0%:47,82,0,0 -Example1_ref 11970 . G . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:172,169,0,0 0/0:.:130:130:0:0%:50,80,0,0 -Example1_ref 11971 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:172,177,0,0 0/0:.:129:129:0:0%:47,82,0,0 -Example1_ref 11972 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:168,178,0,0 0/0:.:130:130:0:0%:49,81,0,0 -Example1_ref 11973 . A . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:173,180,0,0 0/0:.:132:132:0:0%:49,83,0,0 -Example1_ref 11974 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:173,174,0,0 0/0:.:131:131:0:0%:49,82,0,0 -Example1_ref 11975 . G T . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=7.2651E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:170,177,0,1 0/0:.:131:131:0:0%:49,82,0,0 -Example1_ref 11976 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:169,179,0,0 0/0:.:132:132:0:0%:50,82,0,0 -Example1_ref 11977 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:171,183,0,0 0/0:.:130:130:0:0%:49,81,0,0 -Example1_ref 11978 . G . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:171,179,0,0 0/0:.:131:131:0:0%:51,80,0,0 -Example1_ref 11979 . A T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.3093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:170,174,1,0 0/0:.:127:127:0:0%:50,77,0,0 -Example1_ref 11980 . T C . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=2.6931E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:175,175,0,0 0/0:.:129:128:1:0.78%:49,79,0,1 -Example1_ref 11981 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:353:0:0%:177,176,0,0 0/0:.:128:128:0:0%:49,79,0,0 -Example1_ref 11982 . T G . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=2.6283E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:0:0%:177,182,0,0 0/0:.:128:127:1:0.78%:49,78,0,1 -Example1_ref 11983 . G A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=4.5812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:351:1:0.28%:170,181,1,0 0/0:.:126:125:1:0.79%:49,76,0,1 -Example1_ref 11984 . T C . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=7.3006E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:180,176,0,1 0/0:.:132:132:0:0%:53,79,0,0 -Example1_ref 11985 . G T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=4.6603E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:355:1:0.28%:174,181,0,1 0/0:.:131:130:1:0.76%:51,79,1,0 -Example1_ref 11986 . T TATAAGAGACAG . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=7.3482E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:364:362:1:0.28%:182,180,0,1 0/0:.:131:131:0:0%:50,81,0,0 -Example1_ref 11987 . T A . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=2.6061E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:184,182,0,0 0/0:.:129:128:1:0.78%:51,77,0,1 -Example1_ref 11988 . C A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=7.4338E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:364:1:0.27%:184,180,1,0 0/0:.:126:126:0:0%:52,74,0,0 -Example1_ref 11989 . A . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:189,186,0,0 0/0:.:134:134:0:0%:51,83,0,0 -Example1_ref 11990 . G A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=2.6441E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:184,186,0,0 0/0:.:133:132:1:0.75%:50,82,0,1 -Example1_ref 11991 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:187,183,0,0 0/0:.:134:134:0:0%:52,82,0,0 -Example1_ref 11992 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:185,181,0,0 0/0:.:134:134:0:0%:52,82,0,0 -Example1_ref 11993 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:184,178,0,0 0/0:.:132:132:0:0%:51,81,0,0 -Example1_ref 11994 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:187,179,0,0 0/0:.:130:130:0:0%:53,77,0,0 -Example1_ref 11995 . C A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=4.4424E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:185,166,0,1 0/0:.:120:119:1:0.83%:48,71,0,1 -Example1_ref 11996 . C . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:181,178,0,0 0/0:.:115:115:0:0%:46,69,0,0 -Example1_ref 11997 . T A . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=7.5847E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:186,171,0,1 0/0:.:114:114:0:0%:47,67,0,0 -Example1_ref 11998 . T . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:188,179,0,0 0/0:.:124:124:0:0%:52,72,0,0 -Example1_ref 11999 . G . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:183,180,0,0 0/0:.:124:124:0:0%:51,73,0,0 -Example1_ref 12000 . C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:181,173,0,0 0/0:.:128:128:0:0%:53,75,0,0 -Example1_ref 12001 . C A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=2.5755E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:186,183,0,0 0/0:.:128:127:1:0.78%:53,74,1,0 -Example1_ref 12002 . A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:188,187,0,0 0/0:.:128:128:0:0%:51,77,0,0 -Example1_ref 12003 . T . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:186,184,0,0 0/0:.:129:128:0:0%:52,76,0,0 -Example1_ref 12004 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:186,186,0,0 0/0:.:130:130:0:0%:52,78,0,0 -Example1_ref 12005 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:182,186,0,0 0/0:.:124:124:0:0%:50,74,0,0 -Example1_ref 12006 . C A . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=2.5761E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:180,186,0,0 0/0:.:127:126:1:0.79%:52,74,0,1 -Example1_ref 12007 . A . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:185,189,0,0 0/0:.:127:127:0:0%:52,75,0,0 -Example1_ref 12008 . T . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:186,182,0,0 0/0:.:123:123:0:0%:52,71,0,0 -Example1_ref 12009 . T . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:186,182,0,0 0/0:.:121:121:0:0%:51,70,0,0 -Example1_ref 12010 . G A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=2.5678E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:174,182,0,0 0/0:.:123:122:1:0.81%:49,73,0,1 -Example1_ref 12011 . C . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:182,180,0,0 0/0:.:125:125:0:0%:51,74,0,0 -Example1_ref 12012 . G A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=7.4648E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:183,187,1,0 0/0:.:126:126:0:0%:51,75,0,0 -Example1_ref 12013 . A T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=2.5502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:181,190,0,0 0/0:.:127:126:1:0.79%:52,74,0,1 -Example1_ref 12014 . C CA . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=6.7821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:357:10:2.72%:174,183,7,3 0/0:.:124:121:3:2.42%:49,72,1,2 -Example1_ref 12015 . A T . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=2.5364E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:174,185,0,0 0/0:.:122:121:1:0.82%:49,72,0,1 -Example1_ref 12016 . A C . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=7.4477E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:171,184,0,1 0/0:.:122:122:0:0%:49,73,0,0 -Example1_ref 12017 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:171,191,0,0 0/0:.:124:124:0:0%:51,73,0,0 -Example1_ref 12018 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:168,189,0,0 0/0:.:125:125:0:0%:51,74,0,0 -Example1_ref 12019 . A . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:0:0%:173,192,0,0 0/0:.:125:125:0:0%:50,75,0,0 -Example1_ref 12020 . A T . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=4.4924E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:171,194,1,0 0/0:.:127:126:1:0.79%:50,76,1,0 -Example1_ref 12021 . T . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:376:0:0%:180,196,0,0 0/0:.:126:126:0:0%:51,75,0,0 -Example1_ref 12022 . G T . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=7.4052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:178,192,1,0 0/0:.:130:130:0:0%:54,76,0,0 -Example1_ref 12023 . T . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:170,196,0,0 0/0:.:128:128:0:0%:51,77,0,0 -Example1_ref 12024 . G . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:175,195,0,0 0/0:.:128:128:0:0%:52,76,0,0 -Example1_ref 12025 . G . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:374:374:0:0%:176,198,0,0 0/0:.:128:128:0:0%:47,81,0,0 -Example1_ref 12026 . A . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:176,197,0,0 0/0:.:134:134:0:0%:53,81,0,0 -Example1_ref 12027 . T . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:176,195,0,0 0/0:.:128:128:0:0%:49,79,0,0 -Example1_ref 12028 . T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:181,194,0,0 0/0:.:133:133:0:0%:53,80,0,0 -Example1_ref 12029 . C T . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=7.4364E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:1:0.26%:181,198,0,1 0/0:.:131:131:0:0%:52,79,0,0 -Example1_ref 12030 . A . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:182,199,0,0 0/0:.:136:136:0:0%:53,83,0,0 -Example1_ref 12031 . T . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:376:376:0:0%:182,194,0,0 0/0:.:135:135:0:0%:54,81,0,0 -Example1_ref 12032 . T . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:184,199,0,0 0/0:.:132:132:0:0%:51,81,0,0 -Example1_ref 12033 . T G . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=2.6628E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:183,200,0,0 0/0:.:139:138:1:0.72%:54,84,0,1 -Example1_ref 12034 . A . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:183,205,0,0 0/0:.:135:135:0:0%:51,84,0,0 -Example1_ref 12035 . TC T . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=7.3805E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:184,201,0,1 0/0:.:137:137:0:0%:53,84,0,0 -Example1_ref 12036 . C . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:183,204,0,0 0/0:.:135:135:0:0%:51,84,0,0 -Example1_ref 12037 . A . PASS DP=527;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:183,206,0,0 0/0:.:138:138:0:0%:53,85,0,0 -Example1_ref 12038 . G . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:183,200,0,0 0/0:.:138:138:0:0%:55,83,0,0 -Example1_ref 12039 . G GTGTTT . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.3664E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:182,203,1,0 0/0:.:138:138:0:0%:54,84,0,0 -Example1_ref 12040 . A T . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=2.6172E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:378:0:0%:176,202,0,0 0/0:.:134:133:1:0.75%:51,82,1,0 -Example1_ref 12041 . G GCT . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=7.4118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:377:1:0.26%:177,200,1,0 0/0:.:132:132:0:0%:53,79,0,0 -Example1_ref 12042 . G . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:183,204,0,0 0/0:.:134:134:0:0%:53,81,0,0 -Example1_ref 12043 . A . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:178,205,0,0 0/0:.:137:137:0:0%:53,84,0,0 -Example1_ref 12044 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:385:385:0:0%:180,205,0,0 0/0:.:141:141:0:0%:54,87,0,0 -Example1_ref 12045 . G . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:185,205,0,0 0/0:.:138:138:0:0%:51,87,0,0 -Example1_ref 12046 . G . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:190,206,0,0 0/0:.:141:141:0:0%:56,85,0,0 -Example1_ref 12047 . A . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:181,209,0,0 0/0:.:141:141:0:0%:52,89,0,0 -Example1_ref 12048 . T A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=7.4053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:390:1:0.26%:182,208,1,0 0/0:.:137:137:0:0%:50,87,0,0 -Example1_ref 12049 . G . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:182,206,0,0 0/0:.:140:140:0:0%:52,88,0,0 -Example1_ref 12050 . A . PASS DP=528;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:176,210,0,0 0/0:.:141:141:0:0%:52,89,0,0 -Example1_ref 12051 . T G . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=7.2989E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:380:1:0.26%:174,206,0,1 0/0:.:141:141:0:0%:54,87,0,0 -Example1_ref 12052 . A . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:174,209,0,0 0/0:.:141:141:0:0%:53,88,0,0 -Example1_ref 12053 . A . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:173,210,0,0 0/0:.:140:140:0:0%:52,88,0,0 -Example1_ref 12054 . G GCTGTCTCTTA . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=7.3981E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:382:380:1:0.26%:168,212,1,0 0/0:.:134:134:0:0%:50,84,0,0 -Example1_ref 12055 . T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:168,204,0,0 0/0:.:133:133:0:0%:52,81,0,0 -Example1_ref 12056 . G . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:158,199,0,0 0/0:.:128:128:0:0%:49,79,0,0 -Example1_ref 12057 . G A . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=7.3585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:158,192,0,1 0/0:.:126:126:0:0%:47,79,0,0 -Example1_ref 12058 . G T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=5.3919E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:355:2:0.56%:156,199,1,1 0/0:.:129:129:0:0%:51,78,0,0 -Example1_ref 12059 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:166,196,0,0 0/0:.:124:124:0:0%:49,75,0,0 -Example1_ref 12060 . T . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:161,201,0,0 0/0:.:127:127:0:0%:51,76,0,0 -Example1_ref 12061 . C . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:163,202,0,0 0/0:.:124:124:0:0%:48,76,0,0 -Example1_ref 12062 . G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:167,205,0,0 0/0:.:132:132:0:0%:51,81,0,0 -Example1_ref 12063 . A . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:161,205,0,0 0/0:.:133:133:0:0%:50,83,0,0 -Example1_ref 12064 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:164,206,0,0 0/0:.:134:134:0:0%:51,83,0,0 -Example1_ref 12065 . AC A . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=7.332E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:155,204,0,1 0/0:.:131:131:0:0%:48,83,0,0 -Example1_ref 12066 . C . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:0:0%:156,201,0,0 0/0:.:128:128:0:0%:48,80,0,0 -Example1_ref 12067 . A C . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=7.3922E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:154,205,1,0 0/0:.:127:127:0:0%:48,79,0,0 -Example1_ref 12068 . C A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=5.9725E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:352:2:0.56%:153,199,0,2 0/0:.:125:124:1:0.8%:47,77,0,1 -Example1_ref 12069 . C . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:150,204,0,0 0/0:.:123:123:0:0%:44,79,0,0 -Example1_ref 12070 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:152,204,0,0 0/0:.:126:126:0:0%:46,80,0,0 -Example1_ref 12071 . G A . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=6.7787E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:145,203,0,0 0/0:.:123:121:2:1.63%:44,77,0,2 -Example1_ref 12072 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:150,208,0,0 0/0:.:126:126:0:0%:46,80,0,0 -Example1_ref 12073 . C . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:151,199,0,0 0/0:.:117:117:0:0%:45,72,0,0 -Example1_ref 12074 . C A . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=5.5965E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:343:2:0.58%:148,195,0,2 0/0:.:116:116:0:0%:45,71,0,0 -Example1_ref 12075 . C T . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=7.3795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:150,201,1,0 0/0:.:125:125:0:0%:46,79,0,0 -Example1_ref 12076 . G A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.4274E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:156,201,0,1 0/0:.:124:124:0:0%:45,79,0,0 -Example1_ref 12077 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:155,203,0,0 0/0:.:124:124:0:0%:44,80,0,0 -Example1_ref 12078 . T C . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=7.4739E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:357:1:0.28%:155,202,0,1 0/0:.:121:121:0:0%:42,79,0,0 -Example1_ref 12079 . A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:156,203,0,0 0/0:.:125:125:0:0%:44,81,0,0 -Example1_ref 12080 . GA G . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=7.428E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:157,203,1,0 0/0:.:125:125:0:0%:45,80,0,0 -Example1_ref 12081 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:155,197,0,0 0/0:.:123:123:0:0%:43,80,0,0 -Example1_ref 12082 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:157,203,0,0 0/0:.:128:128:0:0%:48,80,0,0 -Example1_ref 12083 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:164,196,0,0 0/0:.:126:126:0:0%:47,79,0,0 -Example1_ref 12084 . T G . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=7.5052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:360:1:0.28%:162,198,1,0 0/0:.:120:120:0:0%:45,75,0,0 -Example1_ref 12085 . G GTTACTGTCTC . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=2.5678E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:0:0%:153,203,0,0 0/0:.:124:122:1:0.81%:46,76,1,0 -Example1_ref 12086 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:160,203,0,0 0/0:.:123:123:0:0%:47,76,0,0 -Example1_ref 12087 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:162,205,0,0 0/0:.:119:119:0:0%:44,75,0,0 -Example1_ref 12088 . A ACTG . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=7.4642E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:364:1:0.27%:159,205,1,0 0/0:.:124:124:0:0%:46,78,0,0 -Example1_ref 12089 . T . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:0:0%:161,197,0,0 0/0:.:118:118:0:0%:46,72,0,0 -Example1_ref 12090 . C A . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=2.5028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:351:5:1.4%:155,196,5,0 0/0:.:113:113:0:0%:44,69,0,0 -Example1_ref 12091 . T A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=2.5263E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:160,195,0,0 0/0:.:120:119:1:0.83%:46,73,0,1 -Example1_ref 12092 . G T . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=2.5053E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:159,197,0,0 0/0:.:119:118:1:0.84%:45,73,1,0 -Example1_ref 12093 . G A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=7.4624E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:346:1:0.29%:153,193,0,1 0/0:.:118:118:0:0%:46,72,0,0 -Example1_ref 12094 . G T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=2.5272E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:153,190,0,0 0/0:.:116:115:1:0.86%:45,70,0,1 -Example1_ref 12095 . G T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=4.6052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:337:1:0.3%:142,195,1,0 0/0:.:122:121:1:0.82%:45,76,1,0 -Example1_ref 12096 . T A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=7.3486E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:153,198,0,1 0/0:.:127:127:0:0%:48,79,0,0 -Example1_ref 12097 . A AGACAG . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=2.686E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:154,200,0,0 0/0:.:130:129:1:0.77%:51,78,0,1 -Example1_ref 12098 . G GCTGTCTC . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=7.4593E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:366:1:0.27%:165,201,1,0 0/0:.:127:125:0:0%:49,76,0,0 -Example1_ref 12099 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:166,203,0,0 0/0:.:133:133:0:0%:52,81,0,0 -Example1_ref 12100 . A . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:163,203,0,0 0/0:.:129:129:0:0%:49,80,0,0 -Example1_ref 12101 . A . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:366:0:0%:161,205,0,0 0/0:.:129:129:0:0%:49,80,0,0 -Example1_ref 12102 . T . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:165,193,0,0 0/0:.:127:127:0:0%:51,76,0,0 -Example1_ref 12103 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:167,195,0,0 0/0:.:128:128:0:0%:49,79,0,0 -Example1_ref 12104 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:166,194,0,0 0/0:.:126:126:0:0%:49,77,0,0 -Example1_ref 12105 . C T . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=2.6369E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:163,200,0,0 0/0:.:130:129:1:0.77%:49,80,0,1 -Example1_ref 12106 . A ACT . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.376E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:356:1:0.28%:163,193,1,0 0/0:.:127:127:0:0%:47,80,0,0 -Example1_ref 12107 . G . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:160,188,0,0 0/0:.:123:123:0:0%:46,77,0,0 -Example1_ref 12108 . G . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:164,184,0,0 0/0:.:127:127:0:0%:48,79,0,0 -Example1_ref 12109 . A . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:165,184,0,0 0/0:.:128:128:0:0%:46,82,0,0 -Example1_ref 12110 . T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:161,177,0,0 0/0:.:121:120:0:0%:43,77,0,0 -Example1_ref 12111 . C . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:157,182,0,0 0/0:.:120:120:0:0%:42,78,0,0 -Example1_ref 12112 . A . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:158,184,0,0 0/0:.:125:125:0:0%:44,81,0,0 -Example1_ref 12113 . G . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:164,183,0,0 0/0:.:124:124:0:0%:43,81,0,0 -Example1_ref 12114 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:159,181,0,0 0/0:.:126:126:0:0%:43,83,0,0 -Example1_ref 12115 . A G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=2.6891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:164,184,0,0 0/0:.:128:127:1:0.78%:45,82,0,1 -Example1_ref 12116 . C . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:162,180,0,0 0/0:.:125:125:0:0%:44,81,0,0 -Example1_ref 12117 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:160,172,0,0 0/0:.:122:122:0:0%:42,80,0,0 -Example1_ref 12118 . T . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:160,168,0,0 0/0:.:127:127:0:0%:50,77,0,0 -Example1_ref 12119 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:162,171,0,0 0/0:.:130:130:0:0%:49,81,0,0 -Example1_ref 12120 . G . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:165,170,0,0 0/0:.:134:134:0:0%:53,81,0,0 -Example1_ref 12121 . T . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:169,171,0,0 0/0:.:137:137:0:0%:53,84,0,0 -Example1_ref 12122 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:162,168,0,0 0/0:.:134:134:0:0%:54,80,0,0 -Example1_ref 12123 . A . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:160,165,0,0 0/0:.:131:131:0:0%:53,78,0,0 -Example1_ref 12124 . A G . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=7.1242E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:161,165,0,1 0/0:.:132:132:0:0%:53,79,0,0 -Example1_ref 12125 . A T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=7.1678E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:159,169,1,0 0/0:.:130:130:0:0%:53,77,0,0 -Example1_ref 12126 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:160,165,0,0 0/0:.:133:133:0:0%:54,79,0,0 -Example1_ref 12127 . A C . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=7.0323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:163,163,1,0 0/0:.:138:138:0:0%:59,79,0,0 -Example1_ref 12128 . T . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:166,163,0,0 0/0:.:140:140:0:0%:60,80,0,0 -Example1_ref 12129 . G . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:165,157,0,0 0/0:.:137:137:0:0%:59,78,0,0 -Example1_ref 12130 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:164,157,0,0 0/0:.:139:139:0:0%:61,78,0,0 -Example1_ref 12131 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:164,160,0,0 0/0:.:139:139:0:0%:60,79,0,0 -Example1_ref 12132 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:166,160,0,0 0/0:.:138:138:0:0%:58,80,0,0 -Example1_ref 12133 . T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:166,156,0,0 0/0:.:137:137:0:0%:59,78,0,0 -Example1_ref 12134 . T . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:163,155,0,0 0/0:.:133:133:0:0%:58,75,0,0 -Example1_ref 12135 . C A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.0259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:170,155,0,1 0/0:.:138:138:0:0%:61,77,0,0 -Example1_ref 12136 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:175,150,0,0 0/0:.:135:135:0:0%:61,74,0,0 -Example1_ref 12137 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:174,155,0,0 0/0:.:134:134:0:0%:61,73,0,0 -Example1_ref 12138 . C . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:174,157,0,0 0/0:.:133:133:0:0%:60,73,0,0 -Example1_ref 12139 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:176,156,0,0 0/0:.:138:138:0:0%:61,77,0,0 -Example1_ref 12140 . G . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:178,153,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 12141 . A . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:171,154,0,0 0/0:.:139:139:0:0%:61,78,0,0 -Example1_ref 12142 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:177,152,0,0 0/0:.:134:134:0:0%:61,73,0,0 -Example1_ref 12143 . G . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:174,154,0,0 0/0:.:133:132:0:0%:60,72,0,0 -Example1_ref 12144 . G . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:194,165,0,0 0/0:.:142:142:0:0%:64,78,0,0 -Example1_ref 12145 . T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:377:0:0%:199,178,0,0 0/0:.:149:148:0:0%:66,82,0,0 -Example1_ref 12146 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:387:0:0%:198,189,0,0 0/0:.:150:150:0:0%:65,85,0,0 -Example1_ref 12147 . C T . PASS DP=524;SS=0;SSC=0;GPV=1E0;SPV=5.1647E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:377:374:2:0.53%:195,179,0,2 0/0:.:147:147:0:0%:66,81,0,0 -Example1_ref 12148 . A G . PASS DP=529;SS=0;SSC=0;GPV=1E0;SPV=7.2023E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:380:1:0.26%:193,187,1,0 0/0:.:148:148:0:0%:64,84,0,0 -Example1_ref 12149 . A AG . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=7.2201E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:386:1:0.26%:198,188,0,1 0/0:.:149:149:0:0%:64,85,0,0 -Example1_ref 12150 . A . PASS DP=537;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:387:0:0%:198,189,0,0 0/0:.:150:150:0:0%:62,88,0,0 -Example1_ref 12151 . C . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:215,185,0,0 0/0:.:155:155:0:0%:73,82,0,0 -Example1_ref 12152 . C A . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=5.1575E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:396:2:0.5%:211,185,0,2 0/0:.:156:156:0:0%:73,83,0,0 -Example1_ref 12153 . C G . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=7.0909E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:389:1:0.26%:208,181,0,1 0/0:.:160:160:0:0%:74,86,0,0 -Example1_ref 12154 . A . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:216,184,0,0 0/0:.:166:166:0:0%:79,87,0,0 -Example1_ref 12155 . T G . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=7.0848E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:400:1:0.25%:218,182,0,1 0/0:.:165:165:0:0%:79,86,0,0 -Example1_ref 12156 . A . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:217,185,0,0 0/0:.:167:167:0:0%:79,88,0,0 -Example1_ref 12157 . T . PASS DP=571;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:220,185,0,0 0/0:.:166:166:0:0%:79,87,0,0 -Example1_ref 12158 . A . PASS DP=573;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:223,181,0,0 0/0:.:169:169:0:0%:81,88,0,0 -Example1_ref 12159 . C G . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=7.125E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:1:0.25%:222,176,0,1 0/0:.:161:161:0:0%:79,82,0,0 -Example1_ref 12160 . T . PASS DP=545;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:219,167,0,0 0/0:.:159:159:0:0%:79,80,0,0 -Example1_ref 12161 . T . PASS DP=551;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:391:391:0:0%:222,169,0,0 0/0:.:160:160:0:0%:77,83,0,0 -Example1_ref 12162 . G T . PASS DP=547;SS=0;SSC=0;GPV=1E0;SPV=7.1846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:392:1:0.25%:223,169,0,1 0/0:.:154:154:0:0%:75,79,0,0 -Example1_ref 12163 . G A . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=2.9074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:218,165,0,0 0/0:.:157:156:1:0.64%:75,81,0,1 -Example1_ref 12164 . A AC . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.1147E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:396:1:0.25%:223,173,1,0 0/0:.:161:161:0:0%:77,84,0,0 -Example1_ref 12165 . T . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:221,169,0,0 0/0:.:160:160:0:0%:77,83,0,0 -Example1_ref 12166 . G . PASS DP=571;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:241,169,0,0 0/0:.:161:161:0:0%:79,82,0,0 -Example1_ref 12167 . T A . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=7.1181E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:409:1:0.24%:244,165,0,1 0/0:.:166:166:0:0%:82,84,0,0 -Example1_ref 12168 . A C . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.1207E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:412:1:0.24%:244,168,1,0 0/0:.:167:167:0:0%:81,86,0,0 -Example1_ref 12169 . T . PASS DP=573;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:407:0:0%:244,163,0,0 0/0:.:166:166:0:0%:82,84,0,0 -Example1_ref 12170 . T A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=4.8692E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:407:406:1:0.25%:238,168,0,1 0/0:.:161:160:1:0.62%:82,78,0,1 -Example1_ref 12171 . T . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:238,167,0,0 0/0:.:159:159:0:0%:82,77,0,0 -Example1_ref 12172 . A . PASS DP=575;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:243,167,0,0 0/0:.:165:165:0:0%:83,82,0,0 -Example1_ref 12173 . C A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=3.6249E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:398:3:0.75%:236,162,0,3 0/0:.:161:161:0:0%:82,79,0,0 -Example1_ref 12174 . C G . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=5.1129E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:400:2:0.5%:234,166,1,1 0/0:.:161:160:0:0%:79,81,0,0 -Example1_ref 12175 . A G . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=5.0837E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:396:2:0.5%:234,162,0,2 0/0:.:160:160:0:0%:81,79,0,0 -Example1_ref 12176 . G . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:394:394:0:0%:234,160,0,0 0/0:.:158:158:0:0%:80,78,0,0 -Example1_ref 12177 . G T . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=4.8538E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:398:1:0.25%:237,161,0,1 0/0:.:157:156:1:0.64%:77,79,1,0 -Example1_ref 12178 . C A . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=6.3516E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:377:2:0.53%:232,145,0,2 0/0:.:151:150:1:0.66%:80,70,0,1 -Example1_ref 12179 . A AG . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=7.1277E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:401:1:0.25%:232,169,0,1 0/0:.:162:162:0:0%:82,80,0,0 -Example1_ref 12180 . A . PASS DP=581;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:244,173,0,0 0/0:.:164:164:0:0%:84,80,0,0 -Example1_ref 12181 . T . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:255,170,0,0 0/0:.:165:165:0:0%:85,80,0,0 -Example1_ref 12182 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:254,177,0,0 0/0:.:165:165:0:0%:84,81,0,0 -Example1_ref 12183 . T . PASS DP=579;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:248,168,0,0 0/0:.:163:163:0:0%:85,78,0,0 -Example1_ref 12184 . T C . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=7.2222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:428:1:0.23%:253,175,0,1 0/0:.:165:165:0:0%:85,80,0,0 -Example1_ref 12185 . A . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:252,179,0,0 0/0:.:164:164:0:0%:84,80,0,0 -Example1_ref 12186 . A C . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=2.7334E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:255,173,0,0 0/0:.:161:160:1:0.62%:81,79,1,0 -Example1_ref 12187 . A . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:248,175,0,0 0/0:.:165:165:0:0%:85,80,0,0 -Example1_ref 12188 . A ATCTGTCTCT . PASS DP=583;SS=0;SSC=0;GPV=1E0;SPV=2.7959E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:245,175,0,0 0/0:.:163:162:1:0.61%:81,81,1,0 -Example1_ref 12189 . T . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:419:0:0%:247,172,0,0 0/0:.:158:158:0:0%:81,77,0,0 -Example1_ref 12190 . A . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:249,171,0,0 0/0:.:164:164:0:0%:85,79,0,0 -Example1_ref 12191 . G . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:252,168,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 12192 . G . PASS DP=584;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:425:0:0%:251,174,0,0 0/0:.:159:159:0:0%:81,78,0,0 -Example1_ref 12193 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:253,176,0,0 0/0:.:161:160:0:0%:83,77,0,0 -Example1_ref 12194 . TC T . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=7.2931E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:1:0.24%:252,170,1,0 0/0:.:157:157:0:0%:85,72,0,0 -Example1_ref 12195 . C . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:0:0%:251,167,0,0 0/0:.:158:158:0:0%:82,76,0,0 -Example1_ref 12196 . A . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:255,178,0,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 12197 . G . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:252,178,0,0 0/0:.:159:159:0:0%:85,74,0,0 -Example1_ref 12198 . C A . PASS DP=587;SS=0;SSC=0;GPV=1E0;SPV=7.2572E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:255,170,0,1 0/0:.:161:161:0:0%:83,78,0,0 -Example1_ref 12199 . A . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:257,180,0,0 0/0:.:165:165:0:0%:85,80,0,0 -Example1_ref 12200 . G T . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=7.5957E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:258,177,0,0 0/0:.:166:164:2:1.2%:85,79,1,1 -Example1_ref 12201 . A . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:259,175,0,0 0/0:.:165:165:0:0%:84,81,0,0 -Example1_ref 12202 . A G . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=2.7973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:430:0:0%:258,172,0,0 0/0:.:167:166:1:0.6%:87,79,0,1 -Example1_ref 12203 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:255,180,0,0 0/0:.:171:171:0:0%:88,83,0,0 -Example1_ref 12204 . C A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=2.7723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:262,176,0,0 0/0:.:168:167:1:0.6%:88,79,0,1 -Example1_ref 12205 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:265,174,0,0 0/0:.:171:171:0:0%:92,79,0,0 -Example1_ref 12206 . GGT G . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=4.8165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:263,171,0,1 0/0:.:170:168:1:0.59%:93,75,0,1 -Example1_ref 12207 . G T . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=4.7965E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:437:1:0.23%:265,172,0,1 0/0:.:171:168:1:0.59%:91,77,1,0 -Example1_ref 12208 . T . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:266,174,0,0 0/0:.:176:174:0:0%:93,81,0,0 -Example1_ref 12209 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:266,177,0,0 0/0:.:175:174:0:0%:94,80,0,0 -Example1_ref 12210 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:267,169,0,0 0/0:.:174:173:0:0%:93,80,0,0 -Example1_ref 12211 . A C . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=7.2078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:268,175,0,1 0/0:.:173:172:0:0%:92,80,0,0 -Example1_ref 12212 . T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:269,169,0,0 0/0:.:172:172:0:0%:92,80,0,0 -Example1_ref 12213 . C . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:266,165,0,0 0/0:.:169:169:0:0%:91,78,0,0 -Example1_ref 12214 . A T . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=7.2303E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:274,174,1,0 0/0:.:172:172:0:0%:94,78,0,0 -Example1_ref 12215 . T C . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.2846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:447:1:0.22%:277,170,1,0 0/0:.:167:167:0:0%:95,72,0,0 -Example1_ref 12216 . C CTTGAT . PASS DP=631;SS=0;SSC=0;GPV=1E0;SPV=7.2742E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:1:0.22%:291,167,1,0 0/0:.:172:172:0:0%:97,75,0,0 -Example1_ref 12217 . A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:288,170,0,0 0/0:.:176:176:0:0%:99,77,0,0 -Example1_ref 12218 . T C . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=5.2382E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:2:0.44%:292,165,0,2 0/0:.:175:175:0:0%:99,76,0,0 -Example1_ref 12219 . T . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:288,170,0,0 0/0:.:180:180:0:0%:100,80,0,0 -Example1_ref 12220 . A . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:288,174,0,0 0/0:.:176:176:0:0%:96,80,0,0 -Example1_ref 12221 . A . PASS DP=637;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:0:0%:284,174,0,0 0/0:.:178:177:0:0%:96,81,0,0 -Example1_ref 12222 . G GC . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=7.2655E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:456:1:0.22%:284,172,1,0 0/0:.:172:172:0:0%:93,79,0,0 -Example1_ref 12223 . A ACAG . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=7.2698E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:283,174,0,1 0/0:.:172:172:0:0%:94,78,0,0 -Example1_ref 12224 . G . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:282,170,0,0 0/0:.:178:178:0:0%:98,80,0,0 -Example1_ref 12225 . T . PASS DP=633;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:290,167,0,0 0/0:.:176:176:0:0%:100,76,0,0 -Example1_ref 12226 . T A . PASS DP=615;SS=0;SSC=0;GPV=1E0;SPV=2.7154E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:288,160,0,0 0/0:.:167:166:1:0.6%:98,68,0,1 -Example1_ref 12227 . C T . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=5.2284E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:445:2:0.45%:284,161,2,0 0/0:.:171:171:0:0%:97,74,0,0 -Example1_ref 12228 . C T . PASS DP=625;SS=0;SSC=0;GPV=1E0;SPV=4.7962E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:1:0.22%:282,168,0,1 0/0:.:174:173:1:0.57%:97,76,1,0 -Example1_ref 12229 . T . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:291,167,0,0 0/0:.:176:176:0:0%:97,79,0,0 -Example1_ref 12230 . T . PASS DP=631;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:291,165,0,0 0/0:.:175:175:0:0%:99,76,0,0 -Example1_ref 12231 . A . PASS DP=639;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:293,170,0,0 0/0:.:176:176:0:0%:98,78,0,0 -Example1_ref 12232 . T . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:0:0%:295,164,0,0 0/0:.:172:172:0:0%:98,74,0,0 -Example1_ref 12233 . T G . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=7.2381E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:455:1:0.22%:291,164,1,0 0/0:.:174:174:0:0%:99,75,0,0 -Example1_ref 12234 . T . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:291,164,0,0 0/0:.:177:177:0:0%:99,78,0,0 -Example1_ref 12235 . T C . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=2.7821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:467:0:0%:297,170,0,0 0/0:.:180:179:1:0.56%:100,79,1,0 -Example1_ref 12236 . G . PASS DP=625;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:288,167,0,0 0/0:.:170:170:0:0%:97,73,0,0 -Example1_ref 12237 . G T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=5.1584E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:442:2:0.45%:275,167,2,0 0/0:.:174:174:0:0%:98,76,0,0 -Example1_ref 12238 . A G . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=7.2186E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:448:1:0.22%:278,170,0,1 0/0:.:173:173:0:0%:96,77,0,0 -Example1_ref 12239 . T . PASS DP=623;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:285,165,0,0 0/0:.:173:173:0:0%:97,76,0,0 -Example1_ref 12240 . C A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=2.7548E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:287,168,0,0 0/0:.:173:172:1:0.58%:99,73,1,0 -Example1_ref 12241 . A . PASS DP=627;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:282,168,0,0 0/0:.:177:177:0:0%:100,77,0,0 -Example1_ref 12242 . G . PASS DP=627;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:282,171,0,0 0/0:.:174:174:0:0%:97,77,0,0 -Example1_ref 12243 . T . PASS DP=635;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:456:456:0:0%:285,171,0,0 0/0:.:179:179:0:0%:103,76,0,0 -Example1_ref 12244 . C T . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.2276E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:450:1:0.22%:286,164,1,0 0/0:.:173:173:0:0%:103,70,0,0 -Example1_ref 12245 . A . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:284,177,0,0 0/0:.:179:179:0:0%:101,78,0,0 -Example1_ref 12246 . C . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:289,169,0,0 0/0:.:182:182:0:0%:103,79,0,0 -Example1_ref 12247 . T A . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=7.2231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:462:1:0.22%:290,172,0,1 0/0:.:178:178:0:0%:101,77,0,0 -Example1_ref 12248 . G A . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=7.205E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:463:1:0.22%:289,174,0,1 0/0:.:180:180:0:0%:103,77,0,0 -Example1_ref 12249 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:470:0:0%:291,179,0,0 0/0:.:180:180:0:0%:101,79,0,0 -Example1_ref 12250 . T . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:288,176,0,0 0/0:.:181:181:0:0%:104,77,0,0 -Example1_ref 12251 . G . PASS DP=646;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:284,180,0,0 0/0:.:182:182:0:0%:102,80,0,0 -Example1_ref 12252 . A . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:283,182,0,0 0/0:.:182:182:0:0%:103,79,0,0 -Example1_ref 12253 . A . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:464:464:0:0%:282,182,0,0 0/0:.:178:178:0:0%:99,79,0,0 -Example1_ref 12254 . A . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:284,185,0,0 0/0:.:180:180:0:0%:101,79,0,0 -Example1_ref 12255 . G T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.2783E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:475:1:0.21%:290,185,1,0 0/0:.:178:178:0:0%:100,78,0,0 -Example1_ref 12256 . A G . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.2936E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:476:1:0.21%:292,184,0,1 0/0:.:177:177:0:0%:100,77,0,0 -Example1_ref 12257 . T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:297,179,0,0 0/0:.:178:178:0:0%:102,76,0,0 -Example1_ref 12258 . C . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:293,180,0,0 0/0:.:177:177:0:0%:103,74,0,0 -Example1_ref 12259 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:294,182,0,0 0/0:.:182:182:0:0%:104,78,0,0 -Example1_ref 12260 . G T . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=7.2643E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:469:1:0.21%:291,178,0,1 0/0:.:177:177:0:0%:103,74,0,0 -Example1_ref 12261 . A . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:471:0:0%:287,184,0,0 0/0:.:170:170:0:0%:95,75,0,0 -Example1_ref 12262 . G . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:469:0:0%:289,180,0,0 0/0:.:176:176:0:0%:100,76,0,0 -Example1_ref 12263 . G T . PASS DP=633;SS=0;SSC=0;GPV=1E0;SPV=4.7222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:459:1:0.22%:282,177,1,0 0/0:.:173:172:1:0.58%:98,74,1,0 -Example1_ref 12264 . C A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.2313E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:443:1:0.23%:282,161,1,0 0/0:.:170:170:0:0%:98,72,0,0 -Example1_ref 12265 . A AG . PASS DP=643;SS=0;SSC=0;GPV=1E0;SPV=7.2586E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:465:1:0.21%:284,181,0,1 0/0:.:176:176:0:0%:100,76,0,0 -Example1_ref 12266 . C A . PASS DP=657;SS=0;SSC=0;GPV=1E0;SPV=7.2298E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:474:1:0.21%:305,169,0,1 0/0:.:182:182:0:0%:110,72,0,0 -Example1_ref 12267 . A . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:305,180,0,0 0/0:.:188:188:0:0%:110,78,0,0 -Example1_ref 12268 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:306,182,0,0 0/0:.:190:190:0:0%:113,77,0,0 -Example1_ref 12269 . T A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=2.7354E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:310,176,0,0 0/0:.:184:182:1:0.55%:107,75,0,1 -Example1_ref 12270 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:304,180,0,0 0/0:.:186:186:0:0%:108,78,0,0 -Example1_ref 12271 . A . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:311,188,0,0 0/0:.:186:186:0:0%:104,82,0,0 -Example1_ref 12272 . G T . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=7.3128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:309,188,0,1 0/0:.:183:183:0:0%:101,82,0,0 -Example1_ref 12273 . GAT G . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=6.0418E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:2:0.41%:305,183,2,0 0/0:.:178:176:1:0.56%:98,78,1,0 -Example1_ref 12274 . A ACTGTCTCT . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=7.438E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:303,189,0,0 0/0:.:185:183:2:1.08%:101,82,2,0 -Example1_ref 12275 . T . PASS DP=659;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:308,176,0,0 0/0:.:175:173:0:0%:100,73,0,0 -Example1_ref 12276 . A . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:307,181,0,0 0/0:.:173:173:0:0%:101,72,0,0 -Example1_ref 12277 . T G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=7.3485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:307,177,0,1 0/0:.:175:175:0:0%:104,71,0,0 -Example1_ref 12278 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:313,180,0,0 0/0:.:175:175:0:0%:105,70,0,0 -Example1_ref 12279 . T C . PASS DP=657;SS=0;SSC=0;GPV=1E0;SPV=2.5723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:311,177,0,0 0/0:.:169:168:1:0.59%:97,71,1,0 -Example1_ref 12280 . C A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.3282E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:479:1:0.21%:308,171,0,1 0/0:.:175:175:0:0%:105,70,0,0 -Example1_ref 12281 . A . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:510:0:0%:310,200,0,0 0/0:.:173:173:0:0%:101,72,0,0 -Example1_ref 12282 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:510:0:0%:307,203,0,0 0/0:.:172:172:0:0%:102,70,0,0 -Example1_ref 12283 . G T . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=2.4704E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:509:0:0%:307,202,0,0 0/0:.:167:166:1:0.6%:98,68,1,0 -Example1_ref 12284 . A AC . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:506:1:0.2%:302,204,0,1 0/0:.:169:169:0:0%:102,67,0,0 -Example1_ref 12285 . A G . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=4.5126E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:511:1:0.2%:305,206,1,0 0/0:.:179:178:1:0.56%:109,69,0,1 -Example1_ref 12286 . T A . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=4.2439E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:503:3:0.59%:306,197,0,3 0/0:.:167:167:0:0%:103,64,0,0 -Example1_ref 12287 . C A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=7.485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:499:1:0.2%:299,200,1,0 0/0:.:168:168:0:0%:103,65,0,0 -Example1_ref 12288 . T A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=5.8004E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:494:2:0.4%:298,196,0,2 0/0:.:166:165:1:0.6%:103,62,0,1 -Example1_ref 12289 . T . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:297,202,0,0 0/0:.:172:172:0:0%:107,65,0,0 -Example1_ref 12290 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:298,210,0,0 0/0:.:174:174:0:0%:107,67,0,0 -Example1_ref 12291 . G . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:292,206,0,0 0/0:.:168:168:0:0%:102,66,0,0 -Example1_ref 12292 . T . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:294,207,0,0 0/0:.:170:170:0:0%:105,65,0,0 -Example1_ref 12293 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:293,207,0,0 0/0:.:168:168:0:0%:103,65,0,0 -Example1_ref 12294 . A . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:0:0%:291,206,0,0 0/0:.:175:175:0:0%:108,67,0,0 -Example1_ref 12295 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:0:0%:296,207,0,0 0/0:.:176:176:0:0%:108,68,0,0 -Example1_ref 12296 . C A . PASS DP=657;SS=0;SSC=0;GPV=1E0;SPV=5.5537E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:487:2:0.41%:295,192,0,2 0/0:.:167:167:0:0%:103,64,0,0 -Example1_ref 12297 . C . PASS DP=655;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:0:0%:290,202,0,0 0/0:.:162:162:0:0%:99,63,0,0 -Example1_ref 12298 . T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:289,206,0,0 0/0:.:167:167:0:0%:104,63,0,0 -Example1_ref 12299 . G A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=4.3263E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:494:1:0.2%:287,207,0,1 0/0:.:162:161:1:0.62%:99,62,0,1 -Example1_ref 12300 . C . PASS DP=651;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:282,205,0,0 0/0:.:164:164:0:0%:102,62,0,0 -Example1_ref 12301 . A T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=7.4701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:1:0.2%:286,212,1,0 0/0:.:169:169:0:0%:105,64,0,0 -Example1_ref 12302 . A . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:287,211,0,0 0/0:.:167:167:0:0%:103,64,0,0 -Example1_ref 12303 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:277,212,0,0 0/0:.:165:165:0:0%:102,63,0,0 -Example1_ref 12304 . A . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:280,212,0,0 0/0:.:166:166:0:0%:104,62,0,0 -Example1_ref 12305 . G T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=2.4228E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:280,211,0,0 0/0:.:157:156:1:0.64%:98,58,0,1 -Example1_ref 12306 . C . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:282,202,0,0 0/0:.:163:163:0:0%:103,60,0,0 -Example1_ref 12307 . C . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:275,209,0,0 0/0:.:156:156:0:0%:98,58,0,0 -Example1_ref 12308 . G . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:276,210,0,0 0/0:.:154:154:0:0%:94,60,0,0 -Example1_ref 12309 . C . PASS DP=631;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:276,203,0,0 0/0:.:152:152:0:0%:92,60,0,0 -Example1_ref 12310 . A C . PASS DP=639;SS=0;SSC=0;GPV=1E0;SPV=7.59E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:272,212,1,0 0/0:.:154:154:0:0%:91,63,0,0 -Example1_ref 12311 . A . PASS DP=632;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:266,213,0,0 0/0:.:153:153:0:0%:91,62,0,0 -Example1_ref 12312 . T . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:273,213,0,0 0/0:.:159:159:0:0%:95,64,0,0 -Example1_ref 12313 . A G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.5846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:273,219,0,1 0/0:.:157:157:0:0%:93,64,0,0 -Example1_ref 12314 . A . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:271,220,0,0 0/0:.:153:153:0:0%:90,63,0,0 -Example1_ref 12315 . G . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:275,217,0,0 0/0:.:155:155:0:0%:91,64,0,0 -Example1_ref 12316 . A AG . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=7.5655E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:274,216,0,1 0/0:.:158:158:0:0%:94,64,0,0 -Example1_ref 12317 . A T . PASS DP=643;SS=0;SSC=0;GPV=1E0;SPV=4.1481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:273,218,1,0 0/0:.:151:150:1:0.66%:90,60,0,1 -Example1_ref 12318 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:0:0%:273,216,0,0 0/0:.:154:154:0:0%:93,61,0,0 -Example1_ref 12319 . A . PASS DP=635;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:0:0%:267,215,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 12320 . G . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:0:0%:271,218,0,0 0/0:.:152:152:0:0%:90,62,0,0 -Example1_ref 12321 . C A . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=7.6424E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:482:1:0.21%:272,210,0,1 0/0:.:149:149:0:0%:88,61,0,0 -Example1_ref 12322 . A G . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=7.6406E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:270,218,0,1 0/0:.:151:151:0:0%:88,63,0,0 -Example1_ref 12323 . A . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:0:0%:268,224,0,0 0/0:.:148:148:0:0%:86,62,0,0 -Example1_ref 12324 . T G . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=7.6489E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:487:1:0.2%:269,218,0,1 0/0:.:150:150:0:0%:88,62,0,0 -Example1_ref 12325 . G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:288,231,0,0 0/0:.:167:167:0:0%:104,63,0,0 -Example1_ref 12326 . A ACTGTCTCT . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=2.4579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:537:0:0%:301,236,0,0 0/0:.:175:174:1:0.57%:110,64,1,0 -Example1_ref 12327 . T . PASS DP=717;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:542:542:0:0%:309,233,0,0 0/0:.:175:175:0:0%:113,62,0,0 -Example1_ref 12328 . A C . PASS DP=727;SS=0;SSC=0;GPV=1E0;SPV=4.4085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:543:542:1:0.18%:308,234,1,0 0/0:.:184:182:1:0.55%:116,66,1,0 -Example1_ref 12329 . T G . PASS DP=717;SS=0;SSC=0;GPV=1E0;SPV=7.486E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:535:1:0.19%:306,229,1,0 0/0:.:180:180:0:0%:115,65,0,0 -Example1_ref 12330 . A G . PASS DP=735;SS=0;SSC=0;GPV=1E0;SPV=7.4694E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:549:548:1:0.18%:312,236,1,0 0/0:.:186:186:0:0%:120,66,0,0 -Example1_ref 12331 . T C . PASS DP=735;SS=0;SSC=0;GPV=1E0;SPV=2.517E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:550:550:0:0%:315,235,0,0 0/0:.:185:184:1:0.54%:118,66,1,0 -Example1_ref 12332 . A T . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=7.4933E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:559:558:1:0.18%:312,246,0,1 0/0:.:187:187:0:0%:120,67,0,0 -Example1_ref 12333 . C CACTGTCTCTT . PASS DP=727;SS=0;SSC=0;GPV=1E0;SPV=5.7813E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:545:542:2:0.37%:296,246,2,0 0/0:.:182:180:1:0.55%:111,69,1,0 -Example1_ref 12334 . AT A . PASS DP=659;SS=0;SSC=0;GPV=1E0;SPV=5.9337E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:485:2:0.41%:274,211,2,0 0/0:.:171:169:1:0.59%:107,62,0,1 -Example1_ref 12335 . T . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:270,209,0,0 0/0:.:166:165:0:0%:106,59,0,0 -Example1_ref 12336 . G A . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=5.5505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:466:2:0.43%:259,207,2,0 0/0:.:160:160:0:0%:103,57,0,0 -Example1_ref 12337 . G T . PASS DP=612;SS=0;SSC=0;GPV=1E0;SPV=4.3781E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:1:0.22%:255,203,0,1 0/0:.:153:152:1:0.65%:95,57,1,0 -Example1_ref 12338 . G T . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=2.5285E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:250,208,0,0 0/0:.:155:154:1:0.65%:98,56,1,0 -Example1_ref 12339 . C . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:262,197,0,0 0/0:.:155:155:0:0%:104,51,0,0 -Example1_ref 12340 . A AT . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:471:470:1:0.21%:262,208,1,0 0/0:.:157:157:0:0%:104,53,0,0 -Example1_ref 12341 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:249,201,0,0 0/0:.:156:155:0:0%:102,53,0,0 -Example1_ref 12342 . T C . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=7.4157E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:461:1:0.22%:244,217,1,0 0/0:.:162:161:0:0%:101,60,0,0 -Example1_ref 12343 . T . PASS DP=635;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:247,221,0,0 0/0:.:167:166:0:0%:105,61,0,0 -Example1_ref 12344 . G . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:252,225,0,0 0/0:.:161:161:0:0%:99,62,0,0 -Example1_ref 12345 . G GC . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=5.8763E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:491:2:0.41%:264,227,2,0 0/0:.:169:168:1:0.59%:104,64,1,0 -Example1_ref 12346 . T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:272,228,0,0 0/0:.:168:168:0:0%:107,61,0,0 -Example1_ref 12347 . A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:268,232,0,0 0/0:.:170:170:0:0%:107,63,0,0 -Example1_ref 12348 . A . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:268,231,0,0 0/0:.:167:167:0:0%:104,63,0,0 -Example1_ref 12349 . T . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:269,229,0,0 0/0:.:167:167:0:0%:104,63,0,0 -Example1_ref 12350 . G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:263,230,0,0 0/0:.:167:167:0:0%:102,65,0,0 -Example1_ref 12351 . AT A . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=7.4363E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:1:0.2%:264,231,1,0 0/0:.:171:171:0:0%:107,64,0,0 -Example1_ref 12352 . T . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:0:0%:267,228,0,0 0/0:.:169:169:0:0%:105,64,0,0 -Example1_ref 12353 . G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:265,231,0,0 0/0:.:168:168:0:0%:104,64,0,0 -Example1_ref 12354 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:270,236,0,0 0/0:.:168:168:0:0%:103,65,0,0 -Example1_ref 12355 . G . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:258,234,0,0 0/0:.:168:168:0:0%:102,66,0,0 -Example1_ref 12356 . A T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=2.5223E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:262,242,0,0 0/0:.:170:169:1:0.59%:103,66,1,0 -Example1_ref 12357 . T G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=7.4777E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:1:0.2%:263,240,0,1 0/0:.:170:170:0:0%:104,66,0,0 -Example1_ref 12358 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:518:0:0%:277,241,0,0 0/0:.:178:178:0:0%:109,69,0,0 -Example1_ref 12359 . T . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:277,234,0,0 0/0:.:176:175:0:0%:109,66,0,0 -Example1_ref 12360 . C T . PASS DP=701;SS=0;SSC=0;GPV=1E0;SPV=7.418E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:519:1:0.19%:281,238,0,1 0/0:.:181:181:0:0%:111,70,0,0 -Example1_ref 12361 . T . PASS DP=721;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:533:0:0%:281,252,0,0 0/0:.:188:188:0:0%:111,77,0,0 -Example1_ref 12362 . T . PASS DP=723;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:533:0:0%:280,253,0,0 0/0:.:190:190:0:0%:112,78,0,0 -Example1_ref 12363 . G T . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=2.6993E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:275,247,0,0 0/0:.:193:192:1:0.52%:114,78,1,0 -Example1_ref 12364 . G . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:529:528:0:0%:274,254,0,0 0/0:.:187:187:0:0%:108,79,0,0 -Example1_ref 12365 . A T . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=7.3554E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:533:1:0.19%:277,256,1,0 0/0:.:192:192:0:0%:112,80,0,0 -Example1_ref 12366 . T . PASS DP=734;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:540:540:0:0%:285,255,0,0 0/0:.:194:194:0:0%:112,82,0,0 -Example1_ref 12367 . G A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=7.3034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:519:1:0.19%:282,237,0,1 0/0:.:192:192:0:0%:111,81,0,0 -Example1_ref 12368 . G T . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=5.4576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:516:2:0.39%:272,244,2,0 0/0:.:183:183:0:0%:107,76,0,0 -Example1_ref 12369 . A . PASS DP=718;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:279,246,0,0 0/0:.:193:193:0:0%:113,80,0,0 -Example1_ref 12370 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:270,244,0,0 0/0:.:190:190:0:0%:110,80,0,0 -Example1_ref 12371 . G GAT . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=7.2926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:261,239,1,0 0/0:.:186:186:0:0%:105,81,0,0 -Example1_ref 12372 . C A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=2.6531E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:264,240,0,0 0/0:.:182:181:1:0.55%:108,73,0,1 -Example1_ref 12373 . C CTATT . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=4.6865E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:256,241,1,0 0/0:.:185:184:1:0.54%:107,77,1,0 -Example1_ref 12374 . T . PASS DP=701;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:263,248,0,0 0/0:.:190:190:0:0%:110,80,0,0 -Example1_ref 12375 . C G . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=2.6973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:509:0:0%:264,245,0,0 0/0:.:188:187:1:0.53%:111,76,0,1 -Example1_ref 12376 . A . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:518:0:0%:266,252,0,0 0/0:.:193:193:0:0%:110,83,0,0 -Example1_ref 12377 . C . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:524:524:0:0%:274,250,0,0 0/0:.:196:196:0:0%:115,81,0,0 -Example1_ref 12378 . A . PASS DP=720;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:523:0:0%:274,249,0,0 0/0:.:197:197:0:0%:115,82,0,0 -Example1_ref 12379 . A . PASS DP=725;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:528:0:0%:272,256,0,0 0/0:.:197:197:0:0%:113,84,0,0 -Example1_ref 12380 . A . PASS DP=719;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:267,255,0,0 0/0:.:197:197:0:0%:115,82,0,0 -Example1_ref 12381 . T . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:268,254,0,0 0/0:.:193:193:0:0%:113,80,0,0 -Example1_ref 12382 . A G . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=2.7388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:270,247,0,0 0/0:.:195:194:1:0.51%:112,82,1,0 -Example1_ref 12383 . G . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:273,246,0,0 0/0:.:193:193:0:0%:111,82,0,0 -Example1_ref 12384 . C A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=7.2599E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:513:1:0.19%:272,241,1,0 0/0:.:194:194:0:0%:112,82,0,0 -Example1_ref 12385 . A ACCTGTCT . PASS DP=714;SS=0;SSC=0;GPV=1E0;SPV=7.2969E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:521:520:1:0.19%:273,247,1,0 0/0:.:193:193:0:0%:111,82,0,0 -Example1_ref 12386 . C . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:271,245,0,0 0/0:.:192:192:0:0%:111,81,0,0 -Example1_ref 12387 . A . PASS DP=712;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:274,242,0,0 0/0:.:196:196:0:0%:115,81,0,0 -Example1_ref 12388 . A . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:271,241,0,0 0/0:.:194:194:0:0%:114,80,0,0 -Example1_ref 12389 . A T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=2.7654E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:518:0:0%:272,246,0,0 0/0:.:198:197:1:0.51%:114,83,1,0 -Example1_ref 12390 . C . PASS DP=707;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:271,241,0,0 0/0:.:195:195:0:0%:114,81,0,0 -Example1_ref 12391 . A . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:269,245,0,0 0/0:.:197:197:0:0%:114,83,0,0 -Example1_ref 12392 . C T . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=7.2086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:267,233,0,1 0/0:.:194:194:0:0%:114,80,0,0 -Example1_ref 12393 . G . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:268,235,0,0 0/0:.:192:192:0:0%:112,80,0,0 -Example1_ref 12394 . T . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:267,237,0,0 0/0:.:194:194:0:0%:113,81,0,0 -Example1_ref 12395 . G T . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=6.1963E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:483:2:0.41%:246,237,2,0 0/0:.:184:183:1:0.54%:105,78,0,1 -Example1_ref 12396 . C . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:263,238,0,0 0/0:.:190:190:0:0%:109,81,0,0 -Example1_ref 12397 . A . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:266,240,0,0 0/0:.:187:187:0:0%:107,80,0,0 -Example1_ref 12398 . A . PASS DP=699;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:509:0:0%:267,242,0,0 0/0:.:190:190:0:0%:110,80,0,0 -Example1_ref 12399 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:260,242,0,0 0/0:.:190:190:0:0%:109,81,0,0 -Example1_ref 12400 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:268,234,0,0 0/0:.:188:188:0:0%:110,78,0,0 -Example1_ref 12401 . T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:262,241,0,0 0/0:.:188:188:0:0%:109,79,0,0 -Example1_ref 12402 . T . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:264,239,0,0 0/0:.:190:190:0:0%:111,79,0,0 -Example1_ref 12403 . T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:266,241,0,0 0/0:.:189:189:0:0%:108,81,0,0 -Example1_ref 12404 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:260,247,0,0 0/0:.:193:193:0:0%:110,83,0,0 -Example1_ref 12405 . C . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:253,245,0,0 0/0:.:188:188:0:0%:107,81,0,0 -Example1_ref 12406 . A . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:250,245,0,0 0/0:.:188:188:0:0%:106,82,0,0 -Example1_ref 12407 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:245,239,0,0 0/0:.:186:186:0:0%:105,81,0,0 -Example1_ref 12408 . T . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:245,243,0,0 0/0:.:185:185:0:0%:105,80,0,0 -Example1_ref 12409 . A . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:247,243,0,0 0/0:.:183:183:0:0%:106,77,0,0 -Example1_ref 12410 . G T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.3134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:249,240,0,1 0/0:.:180:180:0:0%:102,78,0,0 -Example1_ref 12411 . A . PASS DP=663;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:242,240,0,0 0/0:.:181:181:0:0%:104,77,0,0 -Example1_ref 12412 . T C . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=7.3254E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:492:1:0.2%:250,242,0,1 0/0:.:180:180:0:0%:105,75,0,0 -Example1_ref 12413 . A . PASS DP=663;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:246,239,0,0 0/0:.:178:178:0:0%:104,74,0,0 -Example1_ref 12414 . A G . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=7.3383E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:250,237,0,1 0/0:.:177:177:0:0%:104,73,0,0 -Example1_ref 12415 . T . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:248,235,0,0 0/0:.:188:188:0:0%:112,76,0,0 -Example1_ref 12416 . C . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:250,236,0,0 0/0:.:186:186:0:0%:113,73,0,0 -Example1_ref 12417 . T C . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=2.7653E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:250,234,0,0 0/0:.:185:184:1:0.54%:111,73,0,1 -Example1_ref 12418 . T . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:252,238,0,0 0/0:.:185:185:0:0%:111,74,0,0 -Example1_ref 12419 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:247,247,0,0 0/0:.:188:188:0:0%:112,76,0,0 -Example1_ref 12420 . A . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:247,248,0,0 0/0:.:186:186:0:0%:112,74,0,0 -Example1_ref 12421 . A T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=2.7313E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:242,245,0,0 0/0:.:183:182:1:0.55%:111,71,0,1 -Example1_ref 12422 . A . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:248,246,0,0 0/0:.:179:179:0:0%:105,74,0,0 -Example1_ref 12423 . T . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:264,250,0,0 0/0:.:181:181:0:0%:109,72,0,0 -Example1_ref 12424 . T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:505:0:0%:256,249,0,0 0/0:.:185:185:0:0%:113,72,0,0 -Example1_ref 12425 . C A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=7.3266E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:506:1:0.2%:259,247,0,1 0/0:.:185:185:0:0%:112,73,0,0 -Example1_ref 12426 . T C . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.3276E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:509:1:0.2%:259,250,1,0 0/0:.:186:186:0:0%:112,74,0,0 -Example1_ref 12427 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:259,249,0,0 0/0:.:186:186:0:0%:112,74,0,0 -Example1_ref 12428 . A . PASS DP=701;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:261,255,0,0 0/0:.:185:185:0:0%:110,75,0,0 -Example1_ref 12429 . C T . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=4.6068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:511:1:0.2%:260,251,1,0 0/0:.:185:184:1:0.54%:108,76,1,0 -Example1_ref 12430 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:513:0:0%:258,255,0,0 0/0:.:187:187:0:0%:111,76,0,0 -Example1_ref 12431 . C G . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=2.6263E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:261,250,0,0 0/0:.:182:181:1:0.55%:108,73,0,1 -Example1_ref 12432 . C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:256,242,0,0 0/0:.:180:180:0:0%:106,74,0,0 -Example1_ref 12433 . G T . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=4.5597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:1:0.2%:254,243,0,1 0/0:.:177:176:1:0.56%:106,70,1,0 -Example1_ref 12434 . G T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=6.5775E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:253,250,0,0 0/0:.:175:172:2:1.15%:98,74,2,0 -Example1_ref 12435 . T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:268,251,0,0 0/0:.:185:185:0:0%:112,73,0,0 -Example1_ref 12436 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:265,252,0,0 0/0:.:181:181:0:0%:110,71,0,0 -Example1_ref 12437 . G . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:260,252,0,0 0/0:.:175:175:0:0%:103,72,0,0 -Example1_ref 12438 . C . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:262,246,0,0 0/0:.:174:174:0:0%:104,70,0,0 -Example1_ref 12439 . T C . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=2.6263E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:259,252,0,0 0/0:.:182:181:1:0.55%:108,73,1,0 -Example1_ref 12440 . A C . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=7.4058E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:510:1:0.2%:258,252,1,0 0/0:.:179:179:0:0%:106,73,0,0 -Example1_ref 12441 . C . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:258,246,0,0 0/0:.:181:181:0:0%:109,72,0,0 -Example1_ref 12442 . A T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.3707E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:512:1:0.19%:258,254,1,0 0/0:.:183:183:0:0%:110,73,0,0 -Example1_ref 12443 . T . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:246,246,0,0 0/0:.:181:181:0:0%:109,72,0,0 -Example1_ref 12444 . C . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:261,243,0,0 0/0:.:181:181:0:0%:107,74,0,0 -Example1_ref 12445 . G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:251,248,0,0 0/0:.:175:175:0:0%:104,71,0,0 -Example1_ref 12446 . A . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:253,250,0,0 0/0:.:182:182:0:0%:108,74,0,0 -Example1_ref 12447 . C T . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=2.6861E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:256,245,0,0 0/0:.:184:183:1:0.54%:110,73,1,0 -Example1_ref 12448 . A T . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=7.3646E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:502:1:0.2%:255,247,0,1 0/0:.:180:180:0:0%:107,73,0,0 -Example1_ref 12449 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:256,246,0,0 0/0:.:182:182:0:0%:111,71,0,0 -Example1_ref 12450 . A C . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=2.6618E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:254,245,0,0 0/0:.:181:180:1:0.55%:109,71,1,0 -Example1_ref 12451 . T . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:258,240,0,0 0/0:.:180:180:0:0%:110,70,0,0 -Example1_ref 12452 . T . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:249,242,0,0 0/0:.:182:182:0:0%:110,72,0,0 -Example1_ref 12453 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:254,249,0,0 0/0:.:183:183:0:0%:109,74,0,0 -Example1_ref 12454 . A T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=2.6812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:505:0:0%:252,253,0,0 0/0:.:185:184:1:0.54%:111,73,1,0 -Example1_ref 12455 . TCA T . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=2.6963E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:246,247,0,0 0/0:.:182:181:1:0.55%:108,73,1,0 -Example1_ref 12456 . C . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:240,250,0,0 0/0:.:175:175:0:0%:101,74,0,0 -Example1_ref 12457 . A . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:0:0%:245,252,0,0 0/0:.:175:175:0:0%:102,73,0,0 -Example1_ref 12458 . C . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:0:0%:240,246,0,0 0/0:.:174:174:0:0%:101,73,0,0 -Example1_ref 12459 . A . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:238,251,0,0 0/0:.:172:172:0:0%:100,72,0,0 -Example1_ref 12460 . C . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:241,250,0,0 0/0:.:173:173:0:0%:102,71,0,0 -Example1_ref 12461 . A AG . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=7.4169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:240,250,0,1 0/0:.:171:171:0:0%:100,71,0,0 -Example1_ref 12462 . GATT G . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=2.6872E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:246,252,0,0 0/0:.:183:182:1:0.55%:111,71,0,1 -Example1_ref 12463 . A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:240,256,0,0 0/0:.:175:175:0:0%:104,71,0,0 -Example1_ref 12464 . T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:259,255,0,0 0/0:.:182:182:0:0%:110,72,0,0 -Example1_ref 12465 . T . PASS DP=699;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:257,259,0,0 0/0:.:183:183:0:0%:111,72,0,0 -Example1_ref 12466 . A . PASS DP=705;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:263,256,0,0 0/0:.:186:186:0:0%:112,74,0,0 -Example1_ref 12467 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:511:511:0:0%:256,255,0,0 0/0:.:183:183:0:0%:110,73,0,0 -Example1_ref 12468 . A T . PASS DP=699;SS=0;SSC=0;GPV=1E0;SPV=6.9768E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:253,261,0,0 0/0:.:185:183:2:1.08%:110,73,2,0 -Example1_ref 12469 . G A . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=7.4198E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:508:1:0.2%:252,256,0,1 0/0:.:177:177:0:0%:103,74,0,0 -Example1_ref 12470 . G T . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=4.4386E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:504:1:0.2%:247,257,1,0 0/0:.:172:171:1:0.58%:96,75,1,0 -Example1_ref 12471 . A G . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=7.3047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:476:1:0.21%:245,231,1,0 0/0:.:176:176:0:0%:105,71,0,0 -Example1_ref 12472 . T . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:260,231,0,0 0/0:.:182:182:0:0%:112,70,0,0 -Example1_ref 12473 . A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:255,233,0,0 0/0:.:183:183:0:0%:112,71,0,0 -Example1_ref 12474 . C A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=7.3323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:262,229,1,0 0/0:.:179:179:0:0%:108,71,0,0 -Example1_ref 12475 . T . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:260,228,0,0 0/0:.:177:177:0:0%:109,68,0,0 -Example1_ref 12476 . G . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:246,227,0,0 0/0:.:176:176:0:0%:105,71,0,0 -Example1_ref 12477 . C . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:474:0:0%:256,218,0,0 0/0:.:179:179:0:0%:109,70,0,0 -Example1_ref 12478 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:253,227,0,0 0/0:.:180:180:0:0%:108,72,0,0 -Example1_ref 12479 . A . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:259,229,0,0 0/0:.:181:181:0:0%:108,73,0,0 -Example1_ref 12480 . C CCTG . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.2713E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:476:1:0.21%:258,218,1,0 0/0:.:179:179:0:0%:105,74,0,0 -Example1_ref 12481 . TCA T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=2.7412E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:474:0:0%:257,217,0,0 0/0:.:179:178:1:0.56%:107,71,0,1 -Example1_ref 12482 . C A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=2.7477E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:483:0:0%:256,227,0,0 0/0:.:184:182:1:0.55%:109,73,1,0 -Example1_ref 12483 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:261,228,0,0 0/0:.:185:184:0:0%:109,75,0,0 -Example1_ref 12484 . A . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:261,232,0,0 0/0:.:184:184:0:0%:109,75,0,0 -Example1_ref 12485 . A . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:258,239,0,0 0/0:.:188:188:0:0%:103,85,0,0 -Example1_ref 12486 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:254,241,0,0 0/0:.:191:191:0:0%:107,84,0,0 -Example1_ref 12487 . G GAC . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=2.8302E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:252,242,0,0 0/0:.:195:194:1:0.51%:108,86,0,1 -Example1_ref 12488 . A . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:253,240,0,0 0/0:.:196:196:0:0%:108,88,0,0 -Example1_ref 12489 . A . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:254,246,0,0 0/0:.:192:192:0:0%:105,87,0,0 -Example1_ref 12490 . G . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:252,243,0,0 0/0:.:191:191:0:0%:104,87,0,0 -Example1_ref 12491 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:0:0%:258,240,0,0 0/0:.:193:193:0:0%:105,88,0,0 -Example1_ref 12492 . T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:499:0:0%:262,237,0,0 0/0:.:191:191:0:0%:108,83,0,0 -Example1_ref 12493 . C A . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=5.3171E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:502:2:0.4%:262,240,1,1 0/0:.:187:187:0:0%:105,82,0,0 -Example1_ref 12494 . T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:263,238,0,0 0/0:.:190:190:0:0%:107,83,0,0 -Example1_ref 12495 . C A . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=7.2648E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:1:0.2%:259,242,0,1 0/0:.:189:189:0:0%:103,86,0,0 -Example1_ref 12496 . C . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:257,247,0,0 0/0:.:190:190:0:0%:102,88,0,0 -Example1_ref 12497 . A G . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=7.2448E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:517:1:0.19%:268,249,0,1 0/0:.:197:197:0:0%:110,87,0,0 -Example1_ref 12498 . G . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:508:0:0%:260,248,0,0 0/0:.:186:186:0:0%:101,85,0,0 -Example1_ref 12499 . C . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:262,244,0,0 0/0:.:189:189:0:0%:104,85,0,0 -Example1_ref 12500 . A . PASS DP=721;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:522:0:0%:269,253,0,0 0/0:.:199:199:0:0%:111,88,0,0 -Example1_ref 12501 . C . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:515:0:0%:266,249,0,0 0/0:.:193:192:0:0%:107,85,0,0 -Example1_ref 12502 . ATCGT A . PASS DP=702;SS=0;SSC=0;GPV=1E0;SPV=7.2365E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:508:507:1:0.2%:263,244,0,1 0/0:.:194:194:0:0%:109,85,0,0 -Example1_ref 12503 . T . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:258,244,0,0 0/0:.:194:194:0:0%:108,86,0,0 -Example1_ref 12504 . C A . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=2.8146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:531:0:0%:267,264,0,0 0/0:.:208:207:1:0.48%:113,94,1,0 -Example1_ref 12505 . G . PASS DP=746;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:536:536:0:0%:266,270,0,0 0/0:.:210:210:0:0%:114,96,0,0 -Example1_ref 12506 . T TCTGTCTC . PASS DP=742;SS=0;SSC=0;GPV=1E0;SPV=2.8243E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:531:0:0%:265,266,0,0 0/0:.:209:208:1:0.48%:110,98,1,0 -Example1_ref 12507 . T . PASS DP=740;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:532:531:0:0%:262,269,0,0 0/0:.:208:208:0:0%:110,98,0,0 -Example1_ref 12508 . G A . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=5.2266E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:523:2:0.38%:253,270,1,1 0/0:.:201:201:0:0%:105,96,0,0 -Example1_ref 12509 . A G . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=7.2185E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:532:531:1:0.19%:257,274,1,0 0/0:.:205:205:0:0%:105,100,0,0 -Example1_ref 12510 . T C . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=7.1177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:526:525:1:0.19%:261,264,1,0 0/0:.:213:213:0:0%:112,101,0,0 -Example1_ref 12511 . C . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:529:528:0:0%:256,272,0,0 0/0:.:210:209:0:0%:108,101,0,0 -Example1_ref 12512 . A . PASS DP=731;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:522:521:0:0%:255,266,0,0 0/0:.:209:209:0:0%:109,100,0,0 -Example1_ref 12513 . G GC . PASS DP=719;SS=0;SSC=0;GPV=1E0;SPV=7.1627E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:515:514:1:0.19%:250,264,1,0 0/0:.:204:204:0:0%:103,101,0,0 -Example1_ref 12514 . A . PASS DP=722;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:521:521:0:0%:254,267,0,0 0/0:.:201:201:0:0%:105,96,0,0 -Example1_ref 12515 . G T . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1.8812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:488:1:0.2%:219,269,1,0 0/0:.:188:186:2:1.06%:88,98,2,0 -Example1_ref 12516 . T A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=2.7463E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:0:0%:224,262,0,0 0/0:.:184:183:1:0.54%:89,94,0,1 -Example1_ref 12517 . CAGT C . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=2.6807E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:0:0%:221,265,0,0 0/0:.:178:177:1:0.56%:89,88,0,1 -Example1_ref 12518 . A . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:220,270,0,0 0/0:.:187:187:0:0%:92,95,0,0 -Example1_ref 12519 . G T . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=7.3323E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:216,275,1,0 0/0:.:179:179:0:0%:83,96,0,0 -Example1_ref 12520 . T . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:222,279,0,0 0/0:.:182:182:0:0%:85,97,0,0 -Example1_ref 12521 . A . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:0:0%:222,274,0,0 0/0:.:184:184:0:0%:87,97,0,0 -Example1_ref 12522 . G T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=6.1267E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:475:2:0.42%:210,265,2,0 0/0:.:177:176:1:0.56%:84,92,1,0 -Example1_ref 12523 . A C . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=2.753E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:219,268,0,0 0/0:.:185:184:1:0.54%:87,97,1,0 -Example1_ref 12524 . T C . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=4.7176E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:223,266,0,1 0/0:.:185:183:1:0.54%:89,94,0,1 -Example1_ref 12525 . T G . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=5.2804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:485:2:0.41%:220,265,0,2 0/0:.:183:183:0:0%:86,97,0,0 -Example1_ref 12526 . C A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=7.228E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:221,263,1,0 0/0:.:186:186:0:0%:89,97,0,0 -Example1_ref 12527 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:228,275,0,0 0/0:.:191:191:0:0%:92,99,0,0 -Example1_ref 12528 . T C . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=7.2714E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:230,270,1,0 0/0:.:188:188:0:0%:92,96,0,0 -Example1_ref 12529 . A . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:505:0:0%:231,274,0,0 0/0:.:191:191:0:0%:93,98,0,0 -Example1_ref 12530 . A . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:503:503:0:0%:231,272,0,0 0/0:.:191:191:0:0%:93,98,0,0 -Example1_ref 12531 . C A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=4.7703E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:488:1:0.2%:225,263,1,0 0/0:.:187:186:1:0.53%:90,96,1,0 -Example1_ref 12532 . A . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:0:0%:222,250,0,0 0/0:.:172:172:0:0%:89,83,0,0 -Example1_ref 12533 . A AC . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=2.6594E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:0:0%:220,252,0,0 0/0:.:172:170:1:0.58%:84,86,1,0 -Example1_ref 12534 . T . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:458:0:0%:220,238,0,0 0/0:.:169:168:0:0%:84,84,0,0 -Example1_ref 12535 . G A . PASS DP=637;SS=0;SSC=0;GPV=1E0;SPV=7.3113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:464:1:0.22%:217,247,1,0 0/0:.:171:171:0:0%:85,86,0,0 -Example1_ref 12536 . T . PASS DP=625;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:223,234,0,0 0/0:.:168:168:0:0%:82,86,0,0 -Example1_ref 12537 . C A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=7.2414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:219,221,0,1 0/0:.:168:168:0:0%:85,83,0,0 -Example1_ref 12538 . C . PASS DP=630;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:216,239,0,0 0/0:.:175:175:0:0%:83,92,0,0 -Example1_ref 12539 . A . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:470:470:0:0%:221,249,0,0 0/0:.:177:177:0:0%:85,92,0,0 -Example1_ref 12540 . A . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:223,250,0,0 0/0:.:176:176:0:0%:84,92,0,0 -Example1_ref 12541 . T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:228,250,0,0 0/0:.:180:180:0:0%:87,93,0,0 -Example1_ref 12542 . G T . PASS DP=658;SS=0;SSC=0;GPV=1E0;SPV=7.31E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:480:1:0.21%:228,252,1,0 0/0:.:177:177:0:0%:85,92,0,0 -Example1_ref 12543 . A . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:233,253,0,0 0/0:.:175:175:0:0%:83,92,0,0 -Example1_ref 12544 . T . PASS DP=637;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:466:0:0%:228,238,0,0 0/0:.:171:171:0:0%:82,89,0,0 -Example1_ref 12545 . A G . PASS DP=634;SS=0;SSC=0;GPV=1E0;SPV=7.2713E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:460:1:0.22%:223,237,1,0 0/0:.:173:173:0:0%:83,90,0,0 -Example1_ref 12546 . A . PASS DP=638;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:465:0:0%:224,241,0,0 0/0:.:172:170:0:0%:81,89,0,0 -Example1_ref 12547 . C . PASS DP=628;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:220,234,0,0 0/0:.:174:174:0:0%:86,88,0,0 -Example1_ref 12548 . A G . PASS DP=629;SS=0;SSC=0;GPV=1E0;SPV=7.293E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:457:1:0.22%:213,244,1,0 0/0:.:170:170:0:0%:84,86,0,0 -Example1_ref 12549 . T . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:450:450:0:0%:214,236,0,0 0/0:.:167:167:0:0%:84,83,0,0 -Example1_ref 12550 . G A . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=2.6248E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:214,244,0,0 0/0:.:163:162:1:0.61%:80,82,0,1 -Example1_ref 12551 . T . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:215,229,0,0 0/0:.:160:160:0:0%:83,77,0,0 -Example1_ref 12552 . C A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.3142E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:432:1:0.23%:211,221,0,1 0/0:.:159:159:0:0%:84,75,0,0 -Example1_ref 12553 . T . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:448:448:0:0%:213,235,0,0 0/0:.:161:161:0:0%:83,78,0,0 -Example1_ref 12554 . A . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:209,238,0,0 0/0:.:162:162:0:0%:82,80,0,0 -Example1_ref 12555 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:212,228,0,0 0/0:.:162:162:0:0%:83,79,0,0 -Example1_ref 12556 . C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:0:0%:212,230,0,0 0/0:.:159:159:0:0%:82,77,0,0 -Example1_ref 12557 . A G . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.3279E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:446:1:0.22%:211,235,1,0 0/0:.:163:163:0:0%:82,81,0,0 -Example1_ref 12558 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:206,234,0,0 0/0:.:160:160:0:0%:79,81,0,0 -Example1_ref 12559 . G T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=2.6182E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:206,231,0,0 0/0:.:155:154:1:0.65%:77,77,1,0 -Example1_ref 12560 . G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:201,233,0,0 0/0:.:154:154:0:0%:73,81,0,0 -Example1_ref 12561 . A G . PASS DP=579;SS=0;SSC=0;GPV=1E0;SPV=7.2884E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:421:1:0.24%:196,225,0,1 0/0:.:157:157:0:0%:77,80,0,0 -Example1_ref 12562 . A . PASS DP=591;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:205,227,0,0 0/0:.:159:159:0:0%:79,80,0,0 -Example1_ref 12563 . G T . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=2.7556E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:200,218,0,0 0/0:.:159:158:1:0.63%:80,78,1,0 -Example1_ref 12564 . C A . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=7.3534E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:426:0:0%:203,223,0,0 0/0:.:159:157:2:1.26%:81,76,0,2 -Example1_ref 12565 . T . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:204,236,0,0 0/0:.:159:159:0:0%:78,81,0,0 -Example1_ref 12566 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:442:0:0%:205,237,0,0 0/0:.:162:162:0:0%:79,83,0,0 -Example1_ref 12567 . A . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:0:0%:198,242,0,0 0/0:.:158:158:0:0%:75,83,0,0 -Example1_ref 12568 . C CA . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=5.396E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:433:2:0.46%:200,233,0,2 0/0:.:157:157:0:0%:77,80,0,0 -Example1_ref 12569 . G . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:199,243,0,0 0/0:.:155:155:0:0%:74,81,0,0 -Example1_ref 12570 . A . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:197,238,0,0 0/0:.:158:158:0:0%:74,84,0,0 -Example1_ref 12571 . A T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=7.348E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:194,240,0,1 0/0:.:157:157:0:0%:74,83,0,0 -Example1_ref 12572 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:200,239,0,0 0/0:.:159:159:0:0%:75,84,0,0 -Example1_ref 12573 . C A . PASS DP=571;SS=0;SSC=0;GPV=1E0;SPV=7.3555E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:1:0.24%:194,225,0,1 0/0:.:151:151:0:0%:71,80,0,0 -Example1_ref 12574 . C . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:196,239,0,0 0/0:.:153:153:0:0%:72,81,0,0 -Example1_ref 12575 . A . PASS DP=591;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:198,240,0,0 0/0:.:153:153:0:0%:72,81,0,0 -Example1_ref 12576 . A C . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=2.5763E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:438:0:0%:198,240,0,0 0/0:.:152:151:1:0.66%:70,81,1,0 -Example1_ref 12577 . A . PASS DP=591;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:193,243,0,0 0/0:.:155:155:0:0%:70,85,0,0 -Example1_ref 12578 . G T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=4.5542E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:436:1:0.23%:194,242,0,1 0/0:.:155:154:1:0.65%:69,85,1,0 -Example1_ref 12579 . A T . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=7.3005E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:429:1:0.23%:192,237,1,0 0/0:.:159:159:0:0%:72,87,0,0 -Example1_ref 12580 . T . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:194,234,0,0 0/0:.:157:157:0:0%:71,86,0,0 -Example1_ref 12581 . A . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:197,243,0,0 0/0:.:158:158:0:0%:72,86,0,0 -Example1_ref 12582 . C . PASS DP=574;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:193,229,0,0 0/0:.:152:152:0:0%:71,81,0,0 -Example1_ref 12583 . C . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:182,236,0,0 0/0:.:146:146:0:0%:64,82,0,0 -Example1_ref 12584 . A G . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=7.4017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:432:1:0.23%:192,240,1,0 0/0:.:152:152:0:0%:72,80,0,0 -Example1_ref 12585 . A . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:192,235,0,0 0/0:.:150:150:0:0%:69,81,0,0 -Example1_ref 12586 . T . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:422:422:0:0%:194,228,0,0 0/0:.:147:147:0:0%:69,78,0,0 -Example1_ref 12587 . C . PASS DP=577;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:192,235,0,0 0/0:.:150:150:0:0%:69,81,0,0 -Example1_ref 12588 . T G . PASS DP=575;SS=0;SSC=0;GPV=1E0;SPV=7.4087E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:425:1:0.23%:195,230,0,1 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 12589 . T . PASS DP=583;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:194,234,0,0 0/0:.:155:155:0:0%:71,84,0,0 -Example1_ref 12590 . A AT . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=7.3402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:424:1:0.24%:187,237,0,1 0/0:.:154:154:0:0%:69,85,0,0 -Example1_ref 12591 . T . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:187,225,0,0 0/0:.:150:150:0:0%:67,83,0,0 -Example1_ref 12592 . T . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:188,228,0,0 0/0:.:151:151:0:0%:69,82,0,0 -Example1_ref 12593 . T . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:414:0:0%:186,228,0,0 0/0:.:149:149:0:0%:70,79,0,0 -Example1_ref 12594 . A . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:412:0:0%:186,226,0,0 0/0:.:151:151:0:0%:69,82,0,0 -Example1_ref 12595 . T A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=7.3723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:403:1:0.25%:182,221,1,0 0/0:.:144:144:0:0%:69,75,0,0 -Example1_ref 12596 . C . PASS DP=556;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:185,225,0,0 0/0:.:146:146:0:0%:65,81,0,0 -Example1_ref 12597 . A . PASS DP=557;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:184,224,0,0 0/0:.:149:149:0:0%:65,84,0,0 -Example1_ref 12598 . A . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:410:0:0%:182,228,0,0 0/0:.:153:153:0:0%:69,84,0,0 -Example1_ref 12599 . C . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:401:401:0:0%:179,222,0,0 0/0:.:151:151:0:0%:70,81,0,0 -Example1_ref 12600 . A . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:399:399:0:0%:180,219,0,0 0/0:.:149:149:0:0%:67,82,0,0 -Example1_ref 12601 . A . PASS DP=541;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:176,217,0,0 0/0:.:148:148:0:0%:66,82,0,0 -Example1_ref 12602 . A . PASS DP=541;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:393:393:0:0%:178,215,0,0 0/0:.:148:148:0:0%:65,83,0,0 -Example1_ref 12603 . T . PASS DP=533;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:178,211,0,0 0/0:.:144:144:0:0%:62,82,0,0 -Example1_ref 12604 . C A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=7.342E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:395:394:1:0.25%:177,217,0,1 0/0:.:143:143:0:0%:62,81,0,0 -Example1_ref 12605 . A . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:398:398:0:0%:175,223,0,0 0/0:.:144:144:0:0%:63,81,0,0 -Example1_ref 12606 . T . PASS DP=548;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:184,221,0,0 0/0:.:143:143:0:0%:63,80,0,0 -Example1_ref 12607 . G A . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=2.6103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:180,222,0,0 0/0:.:142:141:1:0.7%:61,80,1,0 -Example1_ref 12608 . T . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:181,219,0,0 0/0:.:143:143:0:0%:62,81,0,0 -Example1_ref 12609 . T . PASS DP=553;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:188,217,0,0 0/0:.:148:148:0:0%:66,82,0,0 -Example1_ref 12610 . A G . PASS DP=549;SS=0;SSC=0;GPV=1E0;SPV=7.3224E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:401:1:0.25%:185,216,0,1 0/0:.:147:147:0:0%:65,82,0,0 -Example1_ref 12611 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:403:403:0:0%:184,219,0,0 0/0:.:147:147:0:0%:65,82,0,0 -Example1_ref 12612 . C . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:379:0:0%:165,214,0,0 0/0:.:139:139:0:0%:61,78,0,0 -Example1_ref 12613 . A . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:169,214,0,0 0/0:.:143:143:0:0%:61,82,0,0 -Example1_ref 12614 . G . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:165,216,0,0 0/0:.:142:142:0:0%:63,79,0,0 -Example1_ref 12615 . G T . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=5.3702E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:377:2:0.53%:159,218,2,0 0/0:.:138:138:0:0%:58,80,0,0 -Example1_ref 12616 . A . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:162,221,0,0 0/0:.:140:140:0:0%:58,82,0,0 -Example1_ref 12617 . T C . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=7.3004E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:383:1:0.26%:169,214,1,0 0/0:.:142:142:0:0%:63,79,0,0 -Example1_ref 12618 . T . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:378:378:0:0%:166,212,0,0 0/0:.:143:143:0:0%:61,82,0,0 -Example1_ref 12619 . A . PASS DP=533;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:389:389:0:0%:171,218,0,0 0/0:.:144:144:0:0%:62,82,0,0 -Example1_ref 12620 . A . PASS DP=529;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:384:0:0%:167,217,0,0 0/0:.:145:145:0:0%:63,82,0,0 -Example1_ref 12621 . G . PASS DP=520;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:379:379:0:0%:164,215,0,0 0/0:.:141:141:0:0%:60,81,0,0 -Example1_ref 12622 . T . PASS DP=527;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:386:0:0%:169,217,0,0 0/0:.:141:141:0:0%:60,81,0,0 -Example1_ref 12623 . G . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:162,209,0,0 0/0:.:141:141:0:0%:61,80,0,0 -Example1_ref 12624 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:164,211,0,0 0/0:.:141:141:0:0%:58,83,0,0 -Example1_ref 12625 . T . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:159,211,0,0 0/0:.:136:136:0:0%:56,80,0,0 -Example1_ref 12626 . T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:162,207,0,0 0/0:.:136:136:0:0%:58,78,0,0 -Example1_ref 12627 . T . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:162,209,0,0 0/0:.:140:140:0:0%:58,82,0,0 -Example1_ref 12628 . C A . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=2.6877E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:160,210,0,0 0/0:.:137:135:1:0.74%:55,80,1,0 -Example1_ref 12629 . G A . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=7.2211E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:368:1:0.27%:156,212,0,1 0/0:.:142:142:0:0%:60,82,0,0 -Example1_ref 12630 . A . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:160,209,0,0 0/0:.:140:140:0:0%:59,81,0,0 -Example1_ref 12631 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:154,211,0,0 0/0:.:139:139:0:0%:55,84,0,0 -Example1_ref 12632 . T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:158,207,0,0 0/0:.:140:140:0:0%:59,81,0,0 -Example1_ref 12633 . A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:152,206,0,0 0/0:.:139:139:0:0%:58,81,0,0 -Example1_ref 12634 . T . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:160,201,0,0 0/0:.:138:138:0:0%:56,82,0,0 -Example1_ref 12635 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:158,204,0,0 0/0:.:138:138:0:0%:57,81,0,0 -Example1_ref 12636 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:160,203,0,0 0/0:.:137:137:0:0%:57,80,0,0 -Example1_ref 12637 . A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:157,206,0,0 0/0:.:140:140:0:0%:57,83,0,0 -Example1_ref 12638 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:158,200,0,0 0/0:.:138:138:0:0%:56,82,0,0 -Example1_ref 12639 . T . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:157,203,0,0 0/0:.:141:140:0:0%:57,83,0,0 -Example1_ref 12640 . T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:156,205,0,0 0/0:.:139:139:0:0%:56,83,0,0 -Example1_ref 12641 . A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:157,205,0,0 0/0:.:140:140:0:0%:57,83,0,0 -Example1_ref 12642 . G . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:152,206,0,0 0/0:.:136:136:0:0%:53,83,0,0 -Example1_ref 12643 . A AT . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=2.7879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:153,204,0,0 0/0:.:138:137:1:0.72%:54,83,0,1 -Example1_ref 12644 . T G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=2.7495E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:156,200,0,0 0/0:.:136:134:1:0.74%:54,80,0,1 -Example1_ref 12645 . T . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:154,206,0,0 0/0:.:135:135:0:0%:53,82,0,0 -Example1_ref 12646 . G T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=7.1721E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:147,202,1,0 0/0:.:138:138:0:0%:55,83,0,0 -Example1_ref 12647 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:148,206,0,0 0/0:.:140:140:0:0%:56,84,0,0 -Example1_ref 12648 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:149,204,0,0 0/0:.:143:143:0:0%:57,86,0,0 -Example1_ref 12649 . A . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:150,205,0,0 0/0:.:144:144:0:0%:57,87,0,0 -Example1_ref 12650 . G . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:145,200,0,0 0/0:.:137:137:0:0%:52,85,0,0 -Example1_ref 12651 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:147,198,0,0 0/0:.:141:141:0:0%:56,85,0,0 -Example1_ref 12652 . A . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:138,194,0,0 0/0:.:133:133:0:0%:51,82,0,0 -Example1_ref 12653 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:139,195,0,0 0/0:.:136:136:0:0%:52,84,0,0 -Example1_ref 12654 . C . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:135,199,0,0 0/0:.:131:131:0:0%:48,83,0,0 -Example1_ref 12655 . C A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=2.8027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:123,198,0,0 0/0:.:125:124:1:0.8%:42,82,1,0 -Example1_ref 12656 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:128,200,0,0 0/0:.:132:132:0:0%:49,83,0,0 -Example1_ref 12657 . C . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:128,200,0,0 0/0:.:129:129:0:0%:47,82,0,0 -Example1_ref 12658 . A G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=7.1767E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:1:0.3%:129,203,1,0 0/0:.:131:131:0:0%:49,82,0,0 -Example1_ref 12659 . G T . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=5.1111E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:322:2:0.62%:121,201,2,0 0/0:.:129:129:0:0%:46,83,0,0 -Example1_ref 12660 . GAC G . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=7.1264E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:111,198,0,1 0/0:.:125:125:0:0%:43,82,0,0 -Example1_ref 12661 . A G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.1523E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:120,203,0,1 0/0:.:129:129:0:0%:46,83,0,0 -Example1_ref 12662 . C A . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=5.2169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:321:2:0.62%:125,196,0,2 0/0:.:124:124:0:0%:45,79,0,0 -Example1_ref 12663 . A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:124,200,0,0 0/0:.:129:129:0:0%:47,82,0,0 -Example1_ref 12664 . C A . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=2.8508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:123,198,0,0 0/0:.:128:127:1:0.78%:45,82,1,0 -Example1_ref 12665 . A . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:0:0%:122,196,0,0 0/0:.:126:126:0:0%:46,80,0,0 -Example1_ref 12666 . A . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:0:0%:136,195,0,0 0/0:.:129:129:0:0%:48,81,0,0 -Example1_ref 12667 . T . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:141,184,0,0 0/0:.:126:126:0:0%:48,78,0,0 -Example1_ref 12668 . C . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:138,191,0,0 0/0:.:130:130:0:0%:49,81,0,0 -Example1_ref 12669 . C A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=2.7447E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:139,202,0,0 0/0:.:129:128:1:0.78%:45,83,1,0 -Example1_ref 12670 . C . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:137,206,0,0 0/0:.:122:122:0:0%:44,78,0,0 -Example1_ref 12671 . A AG . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=7.3029E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:144,207,0,1 0/0:.:130:130:0:0%:49,81,0,0 -Example1_ref 12672 . T . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:144,201,0,0 0/0:.:124:124:0:0%:47,77,0,0 -Example1_ref 12673 . A G . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=7.384E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:144,205,0,1 0/0:.:124:124:0:0%:46,78,0,0 -Example1_ref 12674 . G T . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=4.7594E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:343:1:0.29%:142,201,0,1 0/0:.:131:130:1:0.76%:52,78,1,0 -Example1_ref 12675 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:148,194,0,0 0/0:.:125:125:0:0%:55,70,0,0 -Example1_ref 12676 . T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:0:0%:147,187,0,0 0/0:.:124:124:0:0%:55,69,0,0 -Example1_ref 12677 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:145,189,0,0 0/0:.:123:123:0:0%:53,70,0,0 -Example1_ref 12678 . T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:147,189,0,0 0/0:.:123:123:0:0%:56,67,0,0 -Example1_ref 12679 . G . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:139,193,0,0 0/0:.:119:119:0:0%:53,66,0,0 -Example1_ref 12680 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:140,188,0,0 0/0:.:120:120:0:0%:54,66,0,0 -Example1_ref 12681 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:138,189,0,0 0/0:.:121:121:0:0%:53,68,0,0 -Example1_ref 12682 . TC T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=5.2967E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:322:2:0.62%:139,183,0,2 0/0:.:121:121:0:0%:54,67,0,0 -Example1_ref 12683 . C . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:319:0:0%:140,179,0,0 0/0:.:113:113:0:0%:49,64,0,0 -Example1_ref 12684 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:138,185,0,0 0/0:.:119:119:0:0%:54,65,0,0 -Example1_ref 12685 . G . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:145,185,0,0 0/0:.:117:117:0:0%:51,66,0,0 -Example1_ref 12686 . C A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=2.7088E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:146,177,0,0 0/0:.:120:119:1:0.83%:54,65,1,0 -Example1_ref 12687 . A ATCTGTCTCT . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=4.5967E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:1:0.29%:147,191,1,0 0/0:.:122:121:1:0.82%:54,67,1,0 -Example1_ref 12688 . T . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:150,189,0,0 0/0:.:116:116:0:0%:51,65,0,0 -Example1_ref 12689 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:147,188,0,0 0/0:.:117:117:0:0%:51,66,0,0 -Example1_ref 12690 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:0:0%:149,186,0,0 0/0:.:118:118:0:0%:52,66,0,0 -Example1_ref 12691 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:148,187,0,0 0/0:.:115:114:0:0%:49,65,0,0 -Example1_ref 12692 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:137,186,0,0 0/0:.:113:113:0:0%:49,64,0,0 -Example1_ref 12693 . A T . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=7.4654E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:323:1:0.31%:139,184,0,1 0/0:.:110:110:0:0%:48,62,0,0 -Example1_ref 12694 . A . PASS DP=401;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:145,154,0,0 0/0:.:102:102:0:0%:47,55,0,0 -Example1_ref 12695 . G . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:136,152,0,0 0/0:.:97:97:0:0%:42,55,0,0 -Example1_ref 12696 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:132,151,0,0 0/0:.:96:96:0:0%:43,53,0,0 -Example1_ref 12697 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:134,150,0,0 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 12698 . G . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:128,151,0,0 0/0:.:98:98:0:0%:45,53,0,0 -Example1_ref 12699 . A . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:131,151,0,0 0/0:.:95:95:0:0%:43,52,0,0 -Example1_ref 12700 . G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:131,150,0,0 0/0:.:97:96:0:0%:44,52,0,0 -Example1_ref 12701 . T . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:132,146,0,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 12702 . G . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:131,152,0,0 0/0:.:96:96:0:0%:47,49,0,0 -Example1_ref 12703 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:0:0%:131,150,0,0 0/0:.:98:98:0:0%:48,50,0,0 -Example1_ref 12704 . T . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:126,147,0,0 0/0:.:95:95:0:0%:45,50,0,0 -Example1_ref 12705 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:125,149,0,0 0/0:.:94:94:0:0%:44,50,0,0 -Example1_ref 12706 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:130,151,0,0 0/0:.:99:99:0:0%:48,51,0,0 -Example1_ref 12707 . A T . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=2.5326E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:129,157,0,0 0/0:.:97:96:1:1.03%:45,51,0,1 -Example1_ref 12708 . T TCTG . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=2.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:124,151,0,0 0/0:.:100:99:1:1%:46,53,1,0 -Example1_ref 12709 . T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:124,142,0,0 0/0:.:97:97:0:0%:46,51,0,0 -Example1_ref 12710 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:122,146,0,0 0/0:.:96:96:0:0%:46,50,0,0 -Example1_ref 12711 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:124,147,0,0 0/0:.:94:94:0:0%:43,51,0,0 -Example1_ref 12712 . A T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=7.3901E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:268:1:0.37%:122,146,1,0 0/0:.:95:95:0:0%:44,51,0,0 -Example1_ref 12713 . G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:113,147,0,0 0/0:.:96:96:0:0%:45,51,0,0 -Example1_ref 12714 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:115,135,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 12715 . A . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:113,134,0,0 0/0:.:90:89:0:0%:42,47,0,0 -Example1_ref 12716 . A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:116,134,0,0 0/0:.:85:85:0:0%:39,46,0,0 -Example1_ref 12717 . G A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=7.403E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:112,135,1,0 0/0:.:87:87:0:0%:40,47,0,0 -Example1_ref 12718 . T . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:110,132,0,0 0/0:.:89:89:0:0%:43,46,0,0 -Example1_ref 12719 . T C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=2.673E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:107,126,0,0 0/0:.:85:84:1:1.18%:39,45,1,0 -Example1_ref 12720 . T . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:110,134,0,0 0/0:.:89:89:0:0%:41,48,0,0 -Example1_ref 12721 . T . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:112,137,0,0 0/0:.:89:89:0:0%:42,47,0,0 -Example1_ref 12722 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:114,138,0,0 0/0:.:90:90:0:0%:41,49,0,0 -Example1_ref 12723 . A . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:0:0%:114,138,0,0 0/0:.:93:93:0:0%:43,50,0,0 -Example1_ref 12724 . C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:112,135,0,0 0/0:.:89:89:0:0%:40,49,0,0 -Example1_ref 12725 . G . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:103,139,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 12726 . A ACTGTCTC . PASS DP=338;SS=0;SSC=0;GPV=1E0;SPV=2.6036E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:108,142,0,0 0/0:.:88:87:1:1.14%:39,48,1,0 -Example1_ref 12727 . T . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:108,137,0,0 0/0:.:77:77:0:0%:37,40,0,0 -Example1_ref 12728 . G . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:105,138,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 12729 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:110,141,0,0 0/0:.:81:80:0:0%:39,41,0,0 -Example1_ref 12730 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:106,140,0,0 0/0:.:76:76:0:0%:37,39,0,0 -Example1_ref 12731 . C A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=2.4684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:104,134,0,0 0/0:.:78:77:1:1.28%:38,39,0,1 -Example1_ref 12732 . A . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:100,141,0,0 0/0:.:77:77:0:0%:36,41,0,0 -Example1_ref 12733 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:100,141,0,0 0/0:.:79:79:0:0%:38,41,0,0 -Example1_ref 12734 . A . PASS DP=316;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:99,141,0,0 0/0:.:76:76:0:0%:37,39,0,0 -Example1_ref 12735 . T G . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=7.476E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:1:0.43%:94,139,0,1 0/0:.:79:79:0:0%:39,40,0,0 -Example1_ref 12736 . C . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:94,136,0,0 0/0:.:78:78:0:0%:38,40,0,0 -Example1_ref 12737 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:94,134,0,0 0/0:.:75:75:0:0%:38,37,0,0 -Example1_ref 12738 . A G . PASS DP=308;SS=0;SSC=0;GPV=1E0;SPV=7.5325E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:95,136,0,1 0/0:.:76:76:0:0%:38,38,0,0 -Example1_ref 12739 . T . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:95,129,0,0 0/0:.:77:77:0:0%:39,38,0,0 -Example1_ref 12740 . C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:94,132,0,0 0/0:.:74:74:0:0%:37,37,0,0 -Example1_ref 12741 . C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:90,136,0,0 0/0:.:75:75:0:0%:36,39,0,0 -Example1_ref 12742 . A . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:93,133,0,0 0/0:.:77:77:0:0%:37,40,0,0 -Example1_ref 12743 . G . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:91,132,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 12744 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:92,131,0,0 0/0:.:75:75:0:0%:36,39,0,0 -Example1_ref 12745 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:93,133,0,0 0/0:.:76:76:0:0%:36,40,0,0 -Example1_ref 12746 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:92,123,0,0 0/0:.:75:75:0:0%:37,38,0,0 -Example1_ref 12747 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:92,131,0,0 0/0:.:73:73:0:0%:38,35,0,0 -Example1_ref 12748 . T G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.4662E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:220:1:0.45%:93,127,0,1 0/0:.:75:75:0:0%:38,37,0,0 -Example1_ref 12749 . A G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=7.4667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:94,129,0,1 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 12750 . C . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:94,127,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 12751 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:77:77:0:0%:40,37,0,0 -Example1_ref 12752 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:92,129,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 12753 . T A . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=2.5773E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:86,130,0,0 0/0:.:75:74:1:1.33%:39,35,0,1 -Example1_ref 12754 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:76:76:0:0%:40,36,0,0 -Example1_ref 12755 . G . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:90,123,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 12756 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:95,125,0,0 0/0:.:73:73:0:0%:38,35,0,0 -Example1_ref 12757 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 12758 . T . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:96,126,0,0 0/0:.:76:76:0:0%:41,35,0,0 -Example1_ref 12759 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:96,124,0,0 0/0:.:74:74:0:0%:41,33,0,0 -Example1_ref 12760 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:95,125,0,0 0/0:.:73:73:0:0%:40,33,0,0 -Example1_ref 12761 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:0:0%:94,128,0,0 0/0:.:75:75:0:0%:41,34,0,0 -Example1_ref 12762 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:94,121,0,0 0/0:.:75:75:0:0%:41,34,0,0 -Example1_ref 12763 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:92,129,0,0 0/0:.:76:76:0:0%:42,34,0,0 -Example1_ref 12764 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:95,127,0,0 0/0:.:74:74:0:0%:40,34,0,0 -Example1_ref 12765 . G . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:91,125,0,0 0/0:.:71:71:0:0%:39,32,0,0 -Example1_ref 12766 . G . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:75:75:0:0%:41,34,0,0 -Example1_ref 12767 . T . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:95,125,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 12768 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:95,129,0,0 0/0:.:72:72:0:0%:40,32,0,0 -Example1_ref 12769 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:92,126,0,0 0/0:.:74:74:0:0%:42,32,0,0 -Example1_ref 12770 . C A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=5.503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:214:2:0.93%:96,118,0,2 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12771 . C A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=7.4576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:219:1:0.45%:91,128,1,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12772 . T C . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=2.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:97,128,0,0 0/0:.:75:74:1:1.33%:43,31,1,0 -Example1_ref 12773 . G A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=7.5593E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:94,128,1,0 0/0:.:72:72:0:0%:41,31,0,0 -Example1_ref 12774 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:93,128,0,0 0/0:.:74:74:0:0%:42,32,0,0 -Example1_ref 12775 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:94,127,0,0 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 12776 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:93,129,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12777 . G . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:96,127,0,0 0/0:.:76:76:0:0%:44,32,0,0 -Example1_ref 12778 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:94,125,0,0 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 12779 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:95,128,0,0 0/0:.:74:74:0:0%:43,31,0,0 -Example1_ref 12780 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:96,126,0,0 0/0:.:74:74:0:0%:43,31,0,0 -Example1_ref 12781 . C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:94,120,0,0 0/0:.:74:74:0:0%:43,31,0,0 -Example1_ref 12782 . G . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:91,126,0,0 0/0:.:72:72:0:0%:41,31,0,0 -Example1_ref 12783 . A T . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=7.4576E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:94,125,0,1 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12784 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:95,127,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12785 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:96,126,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12786 . T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:92,123,0,0 0/0:.:72:72:0:0%:43,29,0,0 -Example1_ref 12787 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:96,127,0,0 0/0:.:74:74:0:0%:44,30,0,0 -Example1_ref 12788 . A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:97,130,0,0 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 12789 . T . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:97,125,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12790 . T A . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=7.4916E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:93,130,0,1 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 12791 . TATG T . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=7.5251E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:224:1:0.44%:94,130,1,0 0/0:.:74:74:0:0%:42,32,0,0 -Example1_ref 12792 . A G . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=2.5083E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:95,132,0,0 0/0:.:76:75:1:1.32%:43,32,1,0 -Example1_ref 12793 . T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:96,132,0,0 0/0:.:75:75:0:0%:44,31,0,0 -Example1_ref 12794 . G C . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=7.5503E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:224:1:0.44%:93,131,1,0 0/0:.:73:73:0:0%:42,31,0,0 -Example1_ref 12795 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:90,133,0,0 0/0:.:74:74:0:0%:42,32,0,0 -Example1_ref 12796 . T C . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=7.5084E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:222:1:0.45%:91,131,0,1 0/0:.:74:74:0:0%:43,31,0,0 -Example1_ref 12797 . A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:92,135,0,0 0/0:.:74:74:0:0%:44,30,0,0 -Example1_ref 12798 . A . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:89,133,0,0 0/0:.:74:74:0:0%:43,31,0,0 -Example1_ref 12799 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:89,134,0,0 0/0:.:72:72:0:0%:42,30,0,0 -Example1_ref 12800 . G . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:84,134,0,0 0/0:.:69:69:0:0%:39,30,0,0 -Example1_ref 12801 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:91,133,0,0 0/0:.:71:71:0:0%:41,30,0,0 -Example1_ref 12802 . C . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:90,125,0,0 0/0:.:70:70:0:0%:41,29,0,0 -Example1_ref 12803 . C . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:84,128,0,0 0/0:.:67:67:0:0%:38,29,0,0 -Example1_ref 12804 . C T . PASS DP=279;SS=0;SSC=0;GPV=1E0;SPV=7.4552E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:207:1:0.48%:83,124,0,1 0/0:.:71:71:0:0%:40,31,0,0 -Example1_ref 12805 . G T . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=7.5089E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:210:1:0.47%:84,126,1,0 0/0:.:70:70:0:0%:39,31,0,0 -Example1_ref 12806 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:89,128,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 12807 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:90,126,0,0 0/0:.:73:73:0:0%:42,31,0,0 -Example1_ref 12808 . C . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:90,123,0,0 0/0:.:73:73:0:0%:42,31,0,0 -Example1_ref 12809 . A . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:92,129,0,0 0/0:.:72:72:0:0%:41,31,0,0 -Example1_ref 12810 . A . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:89,130,0,0 0/0:.:73:73:0:0%:42,31,0,0 -Example1_ref 12811 . A T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=2.4399E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:90,130,0,0 0/0:.:71:70:1:1.41%:39,31,0,1 -Example1_ref 12812 . G . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:90,127,0,0 0/0:.:73:73:0:0%:41,32,0,0 -Example1_ref 12813 . ATGTG A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=2.4042E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:90,128,0,0 0/0:.:69:68:1:1.45%:39,29,0,1 -Example1_ref 12814 . T . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:90,125,0,0 0/0:.:73:72:0:0%:44,28,0,0 -Example1_ref 12815 . G A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=2.3132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:91,125,0,0 0/0:.:66:64:1:1.54%:38,26,0,1 -Example1_ref 12816 . T A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=7.5524E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:89,126,0,1 0/0:.:71:70:0:0%:43,27,0,0 -Example1_ref 12817 . G . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:88,123,0,0 0/0:.:69:68:0:0%:41,27,0,0 -Example1_ref 12818 . G T . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=2.4468E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:85,128,0,0 0/0:.:69:68:1:1.45%:40,28,1,0 -Example1_ref 12819 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:90,130,0,0 0/0:.:70:70:0:0%:41,29,0,0 -Example1_ref 12820 . C CA . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:212:1:0.47%:91,121,0,1 0/0:.:71:71:0:0%:43,28,0,0 -Example1_ref 12821 . T A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=2.4567E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:71:70:1:1.41%:43,27,0,1 -Example1_ref 12822 . T G . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=2.5086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:92,126,0,0 0/0:.:73:72:1:1.37%:44,28,0,1 -Example1_ref 12823 . A . PASS DP=297;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:94,129,0,0 0/0:.:74:74:0:0%:45,29,0,0 -Example1_ref 12824 . T . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:91,127,0,0 0/0:.:73:73:0:0%:45,28,0,0 -Example1_ref 12825 . CAAG C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=7.6056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:215:1:0.46%:91,124,1,0 0/0:.:68:68:0:0%:42,26,0,0 -Example1_ref 12826 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:222:222:0:0%:93,129,0,0 0/0:.:68:68:0:0%:41,27,0,0 -Example1_ref 12827 . A . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:87,129,0,0 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 12828 . G T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=2.4825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:89,126,0,0 0/0:.:71:70:1:1.41%:42,28,1,0 -Example1_ref 12829 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:89,128,0,0 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 12830 . C . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:90,125,0,0 0/0:.:69:69:0:0%:43,26,0,0 -Example1_ref 12831 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:205:0:0%:90,115,0,0 0/0:.:70:70:0:0%:44,26,0,0 -Example1_ref 12832 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:90,116,0,0 0/0:.:70:70:0:0%:43,27,0,0 -Example1_ref 12833 . A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:91,121,0,0 0/0:.:70:70:0:0%:43,27,0,0 -Example1_ref 12834 . T A . PASS DP=282;SS=0;SSC=0;GPV=1E0;SPV=2.5177E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:211:211:0:0%:91,120,0,0 0/0:.:71:70:1:1.41%:44,26,0,1 -Example1_ref 12835 . G . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:88,119,0,0 0/0:.:69:69:0:0%:41,28,0,0 -Example1_ref 12836 . G . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:84,119,0,0 0/0:.:68:68:0:0%:41,27,0,0 -Example1_ref 12837 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:89,117,0,0 0/0:.:67:67:0:0%:41,26,0,0 -Example1_ref 12838 . T C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=7.5547E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:206:1:0.48%:87,119,1,0 0/0:.:67:67:0:0%:41,26,0,0 -Example1_ref 12839 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:90,120,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 12840 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:90,120,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 12841 . T . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:87,119,0,0 0/0:.:65:65:0:0%:40,25,0,0 -Example1_ref 12842 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:89,120,0,0 0/0:.:66:66:0:0%:41,25,0,0 -Example1_ref 12843 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:84,119,0,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 12844 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:205:0:0%:85,120,0,0 0/0:.:68:67:0:0%:41,26,0,0 -Example1_ref 12845 . G GCTGTCTCTT . PASS DP=268;SS=0;SSC=0;GPV=1E0;SPV=2.3596E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:85,119,0,0 0/0:.:64:62:1:1.59%:36,26,1,0 -Example1_ref 12846 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:85,121,0,0 0/0:.:67:67:0:0%:39,28,0,0 -Example1_ref 12847 . C T . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=7.4906E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:199:1:0.5%:84,115,1,0 0/0:.:67:67:0:0%:40,27,0,0 -Example1_ref 12848 . C A . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=4.2818E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:198:1:0.5%:84,114,0,1 0/0:.:64:63:1:1.56%:37,26,0,1 -Example1_ref 12849 . A G . PASS DP=266;SS=0;SSC=0;GPV=1E0;SPV=4.3821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:197:1:0.51%:83,114,0,1 0/0:.:66:65:1:1.52%:39,26,0,1 -Example1_ref 12850 . T C . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=7.5093E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:201:1:0.5%:83,118,1,0 0/0:.:67:67:0:0%:41,26,0,0 -Example1_ref 12851 . T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:201:201:0:0%:85,116,0,0 0/0:.:69:69:0:0%:42,27,0,0 -Example1_ref 12852 . C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:85,118,0,0 0/0:.:71:71:0:0%:43,28,0,0 -Example1_ref 12853 . T C . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=7.3741E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:87,117,0,1 0/0:.:73:73:0:0%:43,30,0,0 -Example1_ref 12854 . T C . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=7.3913E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:1:0.49%:87,116,0,1 0/0:.:72:72:0:0%:43,29,0,0 -Example1_ref 12855 . A . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:83,117,0,0 0/0:.:72:72:0:0%:42,30,0,0 -Example1_ref 12856 . T . PASS DP=262;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:74,116,0,0 0/0:.:72:72:0:0%:42,30,0,0 -Example1_ref 12857 . A . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:71,118,0,0 0/0:.:70:70:0:0%:40,30,0,0 -Example1_ref 12858 . C . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:180:0:0%:64,116,0,0 0/0:.:70:69:0:0%:39,30,0,0 -Example1_ref 12859 . A AC . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=7.1304E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:163:1:0.61%:62,101,1,0 0/0:.:66:66:0:0%:40,26,0,0 -Example1_ref 12860 . A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:62,99,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 12861 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:63,101,0,0 0/0:.:64:64:0:0%:40,24,0,0 -Example1_ref 12862 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:59,101,0,0 0/0:.:62:62:0:0%:37,25,0,0 -Example1_ref 12863 . G . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:157:157:0:0%:56,101,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 12864 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:58,102,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 12865 . T C . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=7.3272E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:59,99,0,1 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 12866 . A AT . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=7.4312E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:161:1:0.62%:58,103,1,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 12867 . T G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=7.3733E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:58,101,0,1 0/0:.:57:57:0:0%:31,26,0,0 -Example1_ref 12868 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:57,101,0,0 0/0:.:58:58:0:0%:32,26,0,0 -Example1_ref 12869 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:58,102,0,0 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 12870 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:59,103,0,0 0/0:.:56:56:0:0%:30,26,0,0 -Example1_ref 12871 . T C . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=4.7077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:157:1:0.63%:56,101,1,0 0/0:.:59:58:1:1.69%:32,26,1,0 -Example1_ref 12872 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:56,99,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 12873 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:158:158:0:0%:56,102,0,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 12874 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:56,100,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 12875 . T TG . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=7.233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:148:1:0.67%:48,100,0,1 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 12876 . G T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=2.8E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:48,96,0,0 0/0:.:56:55:1:1.79%:30,25,1,0 -Example1_ref 12877 . G . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:44,88,0,0 0/0:.:53:53:0:0%:29,24,0,0 -Example1_ref 12878 . G . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:45,94,0,0 0/0:.:52:52:0:0%:27,25,0,0 -Example1_ref 12879 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:45,98,0,0 0/0:.:54:54:0:0%:29,25,0,0 -Example1_ref 12880 . T TGTGTATAA . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=7.1782E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:48,96,0,1 0/0:.:57:57:0:0%:32,25,0,0 -Example1_ref 12881 . G . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:46,95,0,0 0/0:.:54:53:0:0%:28,25,0,0 -Example1_ref 12882 . A T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=7.2139E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:144:1:0.69%:50,94,0,1 0/0:.:56:56:0:0%:31,25,0,0 -Example1_ref 12883 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:53,96,0,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 12884 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:53,95,0,0 0/0:.:58:58:0:0%:33,25,0,0 -Example1_ref 12885 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:53,96,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 12886 . T A . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=7.2549E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:52,95,0,1 0/0:.:56:56:0:0%:33,23,0,0 -Example1_ref 12887 . G . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:53,92,0,0 0/0:.:59:59:0:0%:32,27,0,0 -Example1_ref 12888 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:61,92,0,0 0/0:.:64:64:0:0%:38,26,0,0 -Example1_ref 12889 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:60,94,0,0 0/0:.:68:68:0:0%:41,27,0,0 -Example1_ref 12890 . A ACTGTC . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=6.8868E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:145:1:0.68%:54,91,1,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 12891 . T TC . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=3.1884E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:58,83,0,0 0/0:.:66:65:1:1.52%:39,26,1,0 -Example1_ref 12892 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:55,84,0,0 0/0:.:65:65:0:0%:39,26,0,0 -Example1_ref 12893 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:58,83,0,0 0/0:.:66:66:0:0%:39,27,0,0 -Example1_ref 12894 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:58,81,0,0 0/0:.:67:67:0:0%:41,26,0,0 -Example1_ref 12895 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:140:0:0%:56,84,0,0 0/0:.:68:68:0:0%:41,27,0,0 -Example1_ref 12896 . C A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=6.699E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:1:0.72%:56,81,0,1 0/0:.:68:68:0:0%:42,26,0,0 -Example1_ref 12897 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:55,77,0,0 0/0:.:64:64:0:0%:42,22,0,0 -Example1_ref 12898 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:56,75,0,0 0/0:.:65:65:0:0%:41,24,0,0 -Example1_ref 12899 . G T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=3.2821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:55,76,0,0 0/0:.:64:63:1:1.56%:39,24,1,0 -Example1_ref 12900 . C A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=6.7876E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:130:1:0.76%:55,75,0,1 0/0:.:62:62:0:0%:40,22,0,0 -Example1_ref 12901 . A ACTGTCTCTT . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=5.5221E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:57,76,0,1 0/0:.:66:65:1:1.52%:40,25,1,0 -Example1_ref 12902 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:61,78,0,0 0/0:.:70:70:0:0%:41,29,0,0 -Example1_ref 12903 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:65,73,0,0 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 12904 . T C . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=6.7136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:142:1:0.7%:64,78,1,0 0/0:.:70:70:0:0%:42,28,0,0 -Example1_ref 12905 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:66,73,0,0 0/0:.:72:72:0:0%:43,29,0,0 -Example1_ref 12906 . C . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:65,72,0,0 0/0:.:70:70:0:0%:43,27,0,0 -Example1_ref 12907 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:65,79,0,0 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 12908 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:64,80,0,0 0/0:.:73:73:0:0%:41,32,0,0 -Example1_ref 12909 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:65,83,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 12910 . A . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:66,85,0,0 0/0:.:81:81:0:0%:42,39,0,0 -Example1_ref 12911 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:67,82,0,0 0/0:.:79:79:0:0%:43,36,0,0 -Example1_ref 12912 . G . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:69,84,0,0 0/0:.:77:77:0:0%:41,36,0,0 -Example1_ref 12913 . T . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:70,85,0,0 0/0:.:81:81:0:0%:45,36,0,0 -Example1_ref 12914 . A . PASS DP=236;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:70,85,0,0 0/0:.:81:81:0:0%:44,37,0,0 -Example1_ref 12915 . C . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:68,83,0,0 0/0:.:78:78:0:0%:44,34,0,0 -Example1_ref 12916 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:69,78,0,0 0/0:.:82:82:0:0%:45,37,0,0 -Example1_ref 12917 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:67,77,0,0 0/0:.:80:80:0:0%:43,37,0,0 -Example1_ref 12918 . C A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=3.516E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:66,76,0,0 0/0:.:77:76:1:1.3%:45,31,0,1 -Example1_ref 12919 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:66,74,0,0 0/0:.:83:83:0:0%:45,38,0,0 -Example1_ref 12920 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:66,75,0,0 0/0:.:81:80:0:0%:43,37,0,0 -Example1_ref 12921 . T A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=6.2832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:66,75,0,1 0/0:.:84:84:0:0%:45,39,0,0 -Example1_ref 12922 . T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:66,75,0,0 0/0:.:83:83:0:0%:45,38,0,0 -Example1_ref 12923 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:64,77,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 12924 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:63,74,0,0 0/0:.:82:82:0:0%:44,38,0,0 -Example1_ref 12925 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:0:0%:64,75,0,0 0/0:.:84:84:0:0%:44,40,0,0 -Example1_ref 12926 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:0:0%:63,78,0,0 0/0:.:83:83:0:0%:43,40,0,0 -Example1_ref 12927 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:63,79,0,0 0/0:.:81:81:0:0%:43,38,0,0 -Example1_ref 12928 . A . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:68,78,0,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 12929 . G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:68,77,0,0 0/0:.:86:86:0:0%:44,42,0,0 -Example1_ref 12930 . C T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=6.3362E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:146:1:0.68%:68,78,0,1 0/0:.:85:85:0:0%:44,41,0,0 -Example1_ref 12931 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:68,79,0,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 12932 . GATA G . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=6.4069E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:67,80,1,0 0/0:.:83:83:0:0%:44,39,0,0 -Example1_ref 12933 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:63,77,0,0 0/0:.:85:85:0:0%:45,40,0,0 -Example1_ref 12934 . T . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:66,80,0,0 0/0:.:86:86:0:0%:45,41,0,0 -Example1_ref 12935 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:66,79,0,0 0/0:.:85:85:0:0%:44,41,0,0 -Example1_ref 12936 . C . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:137:0:0%:62,75,0,0 0/0:.:85:85:0:0%:45,40,0,0 -Example1_ref 12937 . T . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:63,76,0,0 0/0:.:86:86:0:0%:44,42,0,0 -Example1_ref 12938 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:63,74,0,0 0/0:.:86:86:0:0%:44,42,0,0 -Example1_ref 12939 . T . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:64,76,0,0 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 12940 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:64,77,0,0 0/0:.:81:81:0:0%:41,40,0,0 -Example1_ref 12941 . T A . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=6.2832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:64,77,1,0 0/0:.:84:84:0:0%:43,41,0,0 -Example1_ref 12942 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:0:0%:65,73,0,0 0/0:.:80:80:0:0%:42,38,0,0 -Example1_ref 12943 . A . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:64,76,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 12944 . C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:64,71,0,0 0/0:.:86:86:0:0%:44,42,0,0 -Example1_ref 12945 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:62,73,0,0 0/0:.:87:87:0:0%:44,43,0,0 -Example1_ref 12946 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:63,76,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 12947 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:62,72,0,0 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 12948 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 12949 . A G . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=3.8117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:62,76,0,0 0/0:.:85:84:1:1.18%:43,41,0,1 -Example1_ref 12950 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:58,75,0,0 0/0:.:84:84:0:0%:42,42,0,0 -Example1_ref 12951 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:87:87:0:0%:43,44,0,0 -Example1_ref 12952 . T C . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=6.0633E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:60,73,0,1 0/0:.:87:87:0:0%:43,44,0,0 -Example1_ref 12953 . C A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=6.1538E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:61,74,0,1 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 12954 . G . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:86:86:0:0%:41,45,0,0 -Example1_ref 12955 . A T . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=3.8393E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:86:85:1:1.16%:40,45,1,0 -Example1_ref 12956 . G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:63,77,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 12957 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:59,80,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 12958 . T . PASS DP=226;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:62,79,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 12959 . A G . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=6.1261E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:135:1:0.74%:61,74,0,1 0/0:.:86:86:0:0%:42,44,0,0 -Example1_ref 12960 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:61,79,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 12961 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:61,77,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 12962 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:61,78,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 12963 . T C . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=3.75E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:61,79,0,0 0/0:.:84:83:1:1.19%:39,44,1,0 -Example1_ref 12964 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:61,79,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 12965 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:60,79,0,0 0/0:.:85:85:0:0%:40,45,0,0 -Example1_ref 12966 . A . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:59,79,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 12967 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:58,83,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 12968 . G T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=6.3348E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:58,81,1,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 12969 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:59,82,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 12970 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:59,81,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 12971 . A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:62,84,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 12972 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:63,82,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 12973 . A . PASS DP=227;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:63,80,0,0 0/0:.:84:84:0:0%:40,44,0,0 -Example1_ref 12974 . A . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:62,83,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 12975 . T . PASS DP=228;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:61,82,0,0 0/0:.:85:85:0:0%:41,44,0,0 -Example1_ref 12976 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:60,79,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 12977 . G . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:61,78,0,0 0/0:.:85:85:0:0%:41,44,0,0 -Example1_ref 12978 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 12979 . C . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:59,79,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 12980 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 12981 . T G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=3.7963E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:61,73,0,0 0/0:.:82:81:1:1.22%:41,40,0,1 -Example1_ref 12982 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:59,75,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 12983 . G T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=6.2736E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:132:1:0.75%:59,73,1,0 0/0:.:79:79:0:0%:38,41,0,0 -Example1_ref 12984 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:58,76,0,0 0/0:.:78:78:0:0%:38,40,0,0 -Example1_ref 12985 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:83:83:0:0%:40,43,0,0 -Example1_ref 12986 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:82:82:0:0%:39,43,0,0 -Example1_ref 12987 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 12988 . T . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:61,75,0,0 0/0:.:81:81:0:0%:40,41,0,0 -Example1_ref 12989 . G . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:61,74,0,0 0/0:.:81:81:0:0%:39,42,0,0 -Example1_ref 12990 . A T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=3.785E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:81:80:1:1.23%:38,42,1,0 -Example1_ref 12991 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:80:80:0:0%:40,40,0,0 -Example1_ref 12992 . G . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:79:79:0:0%:38,41,0,0 -Example1_ref 12993 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:78:78:0:0%:36,42,0,0 -Example1_ref 12994 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:59,75,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 12995 . G . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 12996 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:81:81:0:0%:39,42,0,0 -Example1_ref 12997 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:62,75,0,0 0/0:.:82:82:0:0%:41,41,0,0 -Example1_ref 12998 . A . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 12999 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:61,76,0,0 0/0:.:81:81:0:0%:41,40,0,0 -Example1_ref 13000 . T . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:84:84:0:0%:41,43,0,0 -Example1_ref 13001 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:81:81:0:0%:39,42,0,0 -Example1_ref 13002 . A . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:60,77,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 13003 . T . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:62,77,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 13004 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:61,72,0,0 0/0:.:80:80:0:0%:39,41,0,0 -Example1_ref 13005 . G . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:79:79:0:0%:39,40,0,0 -Example1_ref 13006 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:77:77:0:0%:38,39,0,0 -Example1_ref 13007 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:61,71,0,0 0/0:.:80:80:0:0%:39,41,0,0 -Example1_ref 13008 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:80:80:0:0%:39,41,0,0 -Example1_ref 13009 . A . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:61,73,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 13010 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:61,70,0,0 0/0:.:76:76:0:0%:35,41,0,0 -Example1_ref 13011 . T A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=3.7264E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:60,73,0,0 0/0:.:79:78:1:1.27%:38,40,0,1 -Example1_ref 13012 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:78:78:0:0%:36,42,0,0 -Example1_ref 13013 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:79:79:0:0%:37,42,0,0 -Example1_ref 13014 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 13015 . T C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=6.2559E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:59,72,0,1 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 13016 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:59,70,0,0 0/0:.:77:77:0:0%:35,42,0,0 -Example1_ref 13017 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:59,73,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 13018 . A . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:78:78:0:0%:37,41,0,0 -Example1_ref 13019 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 13020 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:78:78:0:0%:37,41,0,0 -Example1_ref 13021 . T C . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=6.2559E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:131:1:0.76%:60,71,0,1 0/0:.:79:79:0:0%:38,41,0,0 -Example1_ref 13022 . T . PASS DP=214;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:80:80:0:0%:38,42,0,0 -Example1_ref 13023 . T . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:59,72,0,0 0/0:.:81:81:0:0%:37,44,0,0 -Example1_ref 13024 . G T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=3.9024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:53,72,0,0 0/0:.:80:79:1:1.25%:34,45,1,0 -Example1_ref 13025 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:83:82:0:0%:38,44,0,0 -Example1_ref 13026 . C T . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=6.0891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:122:1:0.81%:56,66,1,0 0/0:.:79:79:0:0%:37,42,0,0 -Example1_ref 13027 . C A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=6.1881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:124:1:0.8%:55,69,1,0 0/0:.:77:77:0:0%:35,42,0,0 -Example1_ref 13028 . C A . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=3.8462E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:80:79:1:1.25%:37,42,0,1 -Example1_ref 13029 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:56,72,0,0 0/0:.:81:81:0:0%:37,44,0,0 -Example1_ref 13030 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:83:83:0:0%:39,44,0,0 -Example1_ref 13031 . G T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=6.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:1:0.78%:57,71,1,0 0/0:.:81:81:0:0%:37,44,0,0 -Example1_ref 13032 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:60,71,0,0 0/0:.:81:81:0:0%:36,45,0,0 -Example1_ref 13033 . T . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:59,70,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 13034 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:82:82:0:0%:38,44,0,0 -Example1_ref 13035 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:59,71,0,0 0/0:.:81:81:0:0%:37,44,0,0 -Example1_ref 13036 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:61,70,0,0 0/0:.:80:80:0:0%:37,43,0,0 -Example1_ref 13037 . C . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:58,71,0,0 0/0:.:78:78:0:0%:37,41,0,0 -Example1_ref 13038 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:61,69,0,0 0/0:.:81:81:0:0%:38,43,0,0 -Example1_ref 13039 . C . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:58,71,0,0 0/0:.:75:75:0:0%:34,41,0,0 -Example1_ref 13040 . G . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:55,70,0,0 0/0:.:80:80:0:0%:35,45,0,0 -Example1_ref 13041 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:79:79:0:0%:37,42,0,0 -Example1_ref 13042 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 13043 . T . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:58,70,0,0 0/0:.:78:78:0:0%:35,43,0,0 -Example1_ref 13044 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:58,69,0,0 0/0:.:78:78:0:0%:35,43,0,0 -Example1_ref 13045 . T . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:58,70,0,0 0/0:.:77:77:0:0%:37,40,0,0 -Example1_ref 13046 . C . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:58,69,0,0 0/0:.:78:78:0:0%:36,42,0,0 -Example1_ref 13047 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:60,67,0,0 0/0:.:77:77:0:0%:37,40,0,0 -Example1_ref 13048 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:61,68,0,0 0/0:.:80:80:0:0%:37,43,0,0 -Example1_ref 13049 . A T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=3.7981E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:60,69,0,0 0/0:.:79:78:1:1.27%:35,43,1,0 -Example1_ref 13050 . A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:79:79:0:0%:36,43,0,0 -Example1_ref 13051 . G . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:61,69,0,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 13052 . A . PASS DP=205;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:59,69,0,0 0/0:.:77:77:0:0%:34,43,0,0 -Example1_ref 13053 . C . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:60,69,0,0 0/0:.:77:77:0:0%:36,41,0,0 -Example1_ref 13054 . A . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:58,66,0,0 0/0:.:73:73:0:0%:33,40,0,0 -Example1_ref 13055 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:57,63,0,0 0/0:.:72:72:0:0%:35,37,0,0 -Example1_ref 13056 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:56,63,0,0 0/0:.:73:73:0:0%:35,38,0,0 -Example1_ref 13057 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:58,66,0,0 0/0:.:75:75:0:0%:35,40,0,0 -Example1_ref 13058 . G T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=6.4021E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:120:1:0.83%:56,64,1,0 0/0:.:68:68:0:0%:30,38,0,0 -Example1_ref 13059 . G A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=5.8892E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:121:1:0.82%:54,67,1,0 0/0:.:68:67:1:1.47%:27,40,1,0 -Example1_ref 13060 . T C . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=3.6735E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:58,66,0,0 0/0:.:72:71:1:1.39%:32,39,1,0 -Example1_ref 13061 . G . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:57,66,0,0 0/0:.:71:71:0:0%:32,39,0,0 -Example1_ref 13062 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:57,64,0,0 0/0:.:69:69:0:0%:30,39,0,0 -Example1_ref 13063 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:60,65,0,0 0/0:.:70:70:0:0%:32,38,0,0 -Example1_ref 13064 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:60,62,0,0 0/0:.:71:71:0:0%:34,37,0,0 -Example1_ref 13065 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:58,63,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 13066 . A ACTGTC . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=3.6683E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:61,65,0,0 0/0:.:73:72:1:1.37%:33,39,1,0 -Example1_ref 13067 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:62,63,0,0 0/0:.:71:71:0:0%:33,38,0,0 -Example1_ref 13068 . T . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:73:73:0:0%:34,39,0,0 -Example1_ref 13069 . A AGCT . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=3.7056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:61,63,0,0 0/0:.:73:72:1:1.37%:33,39,1,0 -Example1_ref 13070 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:59,63,0,0 0/0:.:67:67:0:0%:29,38,0,0 -Example1_ref 13071 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:60,62,0,0 0/0:.:69:69:0:0%:32,37,0,0 -Example1_ref 13072 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:56,60,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 13073 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:67:67:0:0%:29,38,0,0 -Example1_ref 13074 . A AT . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=3.7363E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:53,61,0,0 0/0:.:68:67:1:1.47%:27,40,1,0 -Example1_ref 13075 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:71:71:0:0%:30,41,0,0 -Example1_ref 13076 . C . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:54,60,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 13077 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:52,59,0,0 0/0:.:72:72:0:0%:30,42,0,0 -Example1_ref 13078 . A ACTGTC . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=3.8286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:48,60,0,0 0/0:.:67:66:1:1.49%:23,43,1,0 -Example1_ref 13079 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:68:68:0:0%:25,43,0,0 -Example1_ref 13080 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:51,57,0,0 0/0:.:67:67:0:0%:25,42,0,0 -Example1_ref 13081 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:56,57,0,0 0/0:.:69:69:0:0%:26,43,0,0 -Example1_ref 13082 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 13083 . C CTGTCTCTT . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=3.7158E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:57,58,0,0 0/0:.:68:67:1:1.47%:26,41,1,0 -Example1_ref 13084 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:58,57,0,0 0/0:.:67:67:0:0%:26,41,0,0 -Example1_ref 13085 . TACA T . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=6.3243E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:116:1:0.85%:59,57,1,0 0/0:.:68:68:0:0%:26,42,0,0 -Example1_ref 13086 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:55,59,0,0 0/0:.:67:67:0:0%:24,43,0,0 -Example1_ref 13087 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:64:64:0:0%:23,41,0,0 -Example1_ref 13088 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:58,57,0,0 0/0:.:66:66:0:0%:24,42,0,0 -Example1_ref 13089 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:65,59,0,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 13090 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:63,56,0,0 0/0:.:65:65:0:0%:26,39,0,0 -Example1_ref 13091 . C A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=6.5217E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:119:1:0.83%:61,58,1,0 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 13092 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:62,57,0,0 0/0:.:62:62:0:0%:25,37,0,0 -Example1_ref 13093 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:62,57,0,0 0/0:.:63:63:0:0%:25,38,0,0 -Example1_ref 13094 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:61,57,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 13095 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:62:62:0:0%:23,39,0,0 -Example1_ref 13096 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:59,58,0,0 0/0:.:60:60:0:0%:23,37,0,0 -Example1_ref 13097 . A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:57,59,0,0 0/0:.:59:59:0:0%:23,36,0,0 -Example1_ref 13098 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:55,57,0,0 0/0:.:58:58:0:0%:22,36,0,0 -Example1_ref 13099 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:57,45,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 13100 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:56,46,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 13101 . T . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:55,45,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 13102 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 13103 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:49:48:0:0%:20,28,0,0 -Example1_ref 13104 . A . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 13105 . A . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:52,46,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 13106 . A . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:50,46,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 13107 . T . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:53,46,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 13108 . A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:53,45,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 13109 . G . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:50,45,0,0 0/0:.:43:43:0:0%:18,25,0,0 -Example1_ref 13110 . A . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:52,45,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 13111 . A . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:51,44,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 13112 . G . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:52,45,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 13113 . G . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:51,45,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 13114 . TAGGG T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=7E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:54,43,1,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 13115 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:52,42,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13116 . G . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:92:0:0%:51,41,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13117 . G . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13118 . G T . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=4.6026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:85:2:2.3%:46,39,1,1 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 13119 . A . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:48,38,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13120 . T . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:48,36,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 13121 . C . PASS DP=124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:84:84:0:0%:47,37,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 13122 . T . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:86:86:0:0%:47,39,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13123 . C . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:87:0:0%:50,37,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 13124 . A . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:88:0:0%:49,39,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 13125 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:90:0:0%:51,39,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13126 . T TCTGTCTC . PASS DP=133;SS=0;SSC=0;GPV=1E0;SPV=3.1579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:51,40,0,0 0/0:.:42:41:1:2.38%:17,24,1,0 -Example1_ref 13127 . T . PASS DP=130;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:90:90:0:0%:51,39,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 13128 . G . PASS DP=131;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:50,41,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 13129 . G . PASS DP=129;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:89:89:0:0%:48,41,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 13130 . G . PASS DP=127;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:88:88:0:0%:47,41,0,0 0/0:.:39:39:0:0%:17,22,0,0 -Example1_ref 13131 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 13132 . T . PASS DP=132;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:91:91:0:0%:51,40,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13133 . T . PASS DP=134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:53,40,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13134 . A . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:58,42,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13135 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13136 . A . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13137 . T A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=6.9718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:98:1:1.01%:56,42,0,1 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13138 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:54,41,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13139 . A ATGC . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=6.8841E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:94:1:1.05%:53,41,1,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13140 . T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:54,42,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13141 . G T . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=6.9286E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:96:1:1.03%:53,43,1,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13142 . A . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:51,42,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13143 . G . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:56,42,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13144 . A . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:55,42,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13145 . A . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:57,43,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13146 . C . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:57,41,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13147 . A . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:58,41,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13148 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:60,40,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13149 . T . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:58,41,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13150 . G T . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=7.0504E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:57,40,1,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 13151 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:59,41,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 13152 . G T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=4.9848E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:99:1:1%:58,41,1,0 0/0:.:41:40:1:2.44%:19,21,0,1 -Example1_ref 13153 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:61,40,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13154 . G . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:61,40,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13155 . A . PASS DP=138;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:58,37,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13156 . T . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:62,38,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 13157 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:63,38,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13158 . C . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:64,38,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 13159 . C A . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=2.9496E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:64,34,0,0 0/0:.:41:40:1:2.44%:19,21,0,1 -Example1_ref 13160 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:65,36,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13161 . C . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:65,33,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13162 . C . PASS DP=135;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:64,32,0,0 0/0:.:39:39:0:0%:18,21,0,0 -Example1_ref 13163 . C . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:64,36,0,0 0/0:.:40:40:0:0%:17,23,0,0 -Example1_ref 13164 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:65,38,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 13165 . T . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:66,38,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13166 . T . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:66,38,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13167 . C . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:66,36,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13168 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:64,37,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13169 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:66,39,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 13170 . T TAAGAGACAG . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=2.9605E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:67,40,0,0 0/0:.:45:44:1:2.22%:19,25,0,1 -Example1_ref 13171 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:66,40,0,0 0/0:.:44:44:0:0%:19,25,0,0 -Example1_ref 13172 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:66,39,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 13173 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:65,40,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 13174 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:64,41,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 13175 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:66,40,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 13176 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:63,42,0,0 0/0:.:46:46:0:0%:19,27,0,0 -Example1_ref 13177 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:64,42,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 13178 . G . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 13179 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:70,41,0,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 13180 . A . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:71,41,0,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 13181 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:71,42,0,0 0/0:.:49:49:0:0%:20,29,0,0 -Example1_ref 13182 . T . PASS DP=162;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:71,41,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 13183 . A . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:73,42,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 13184 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:75,40,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 13185 . C . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:78,39,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 13186 . T . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:79,41,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 13187 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:78,40,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 13188 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:79,41,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 13189 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:80,42,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 13190 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=2.9545E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:84,40,0,0 0/0:.:52:51:1:1.92%:22,29,0,1 -Example1_ref 13191 . C T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=2.8409E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:85,41,0,0 0/0:.:50:49:1:2%:21,28,0,1 -Example1_ref 13192 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:85,41,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 13193 . T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:85,42,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 13194 . T . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:85,42,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 13195 . A . PASS DP=179;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:84,44,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 13196 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:85,44,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 13197 . C . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:85,43,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 13198 . T . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:85,46,0,0 0/0:.:53:53:0:0%:21,32,0,0 -Example1_ref 13199 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:128:0:0%:84,44,0,0 0/0:.:52:52:0:0%:21,31,0,0 -Example1_ref 13200 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:86,45,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 13201 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 13202 . C A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=4.9577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:127:2:1.55%:85,42,0,2 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 13203 . C . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:85,45,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 13204 . T . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:87,45,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 13205 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:86,45,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 13206 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:85,45,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13207 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 13208 . G . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:85,45,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13209 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13210 . A . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:88,42,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 13211 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:87,41,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13212 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:88,42,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 13213 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:87,42,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 13214 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 13215 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:86,43,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13216 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:83,41,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 13217 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:83,41,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 13218 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:85,43,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 13219 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:87,44,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 13220 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:89,42,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 13221 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:89,44,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 13222 . C . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:85,42,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 13223 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:89,41,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 13224 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:87,43,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 13225 . G . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:90,44,0,0 0/0:.:53:53:0:0%:24,29,0,0 -Example1_ref 13226 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:85,43,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 13227 . AT A . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=7.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:124:1:0.8%:81,43,0,1 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 13228 . T . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:86,42,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 13229 . T . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:87,42,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 13230 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:88,43,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 13231 . T C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=7.2043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:90,43,1,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 13232 . G . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:89,43,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 13233 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:82,44,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 13234 . A . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:81,42,0,0 0/0:.:49:49:0:0%:23,26,0,0 -Example1_ref 13235 . G T . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=7.1591E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:125:1:0.79%:84,41,1,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 13236 . T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:91,41,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 13237 . C . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:93,38,0,0 0/0:.:50:50:0:0%:22,28,0,0 -Example1_ref 13238 . T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:94,41,0,0 0/0:.:51:51:0:0%:24,27,0,0 -Example1_ref 13239 . TA T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=7.2043E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:91,42,1,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 13240 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:92,41,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 13241 . A . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:92,42,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 13242 . A . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:91,43,0,0 0/0:.:52:52:0:0%:24,28,0,0 -Example1_ref 13243 . C . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:94,41,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 13244 . C . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:91,43,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 13245 . C T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=7.3545E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:138:1:0.72%:93,45,1,0 0/0:.:50:50:0:0%:24,26,0,0 -Example1_ref 13246 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:96,44,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 13247 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:97,46,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 13248 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:97,46,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 13249 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 13250 . T . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:95,46,0,0 0/0:.:51:51:0:0%:25,26,0,0 -Example1_ref 13251 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:96,45,0,0 0/0:.:52:52:0:0%:25,27,0,0 -Example1_ref 13252 . C . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:95,45,0,0 0/0:.:50:50:0:0%:25,25,0,0 -Example1_ref 13253 . G T . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=2.6344E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:89,48,0,0 0/0:.:49:48:1:2.04%:21,27,1,0 -Example1_ref 13254 . GT G . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=4.8261E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:143:1:0.69%:95,48,1,0 0/0:.:56:55:1:1.79%:27,28,1,0 -Example1_ref 13255 . T . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:104,47,0,0 0/0:.:58:57:0:0%:29,28,0,0 -Example1_ref 13256 . C CT . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=2.7723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:101,45,0,0 0/0:.:56:55:1:1.79%:28,27,1,0 -Example1_ref 13257 . C . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:102,50,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 13258 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:104,50,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 13259 . A T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=2.6761E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:105,51,0,0 0/0:.:57:56:1:1.75%:29,27,1,0 -Example1_ref 13260 . A . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:102,49,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 13261 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:105,50,0,0 0/0:.:58:58:0:0%:30,28,0,0 -Example1_ref 13262 . A ACACAT . PASS DP=210;SS=0;SSC=0;GPV=1E0;SPV=4.6316E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:153:1:0.65%:102,51,1,0 0/0:.:56:55:1:1.79%:28,27,1,0 -Example1_ref 13263 . C . PASS DP=209;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:102,50,0,0 0/0:.:57:57:0:0%:29,28,0,0 -Example1_ref 13264 . T . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:104,51,0,0 0/0:.:52:51:0:0%:28,23,0,0 -Example1_ref 13265 . G GTCT . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=7.5377E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:149:1:0.67%:100,49,1,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 13266 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:103,47,0,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 13267 . T . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:102,51,0,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 13268 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:103,51,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 13269 . G . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:153:153:0:0%:102,51,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 13270 . T C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=2.3762E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:154:154:0:0%:102,52,0,0 0/0:.:48:47:1:2.08%:24,23,1,0 -Example1_ref 13271 . C A . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=7.4747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:97,50,0,1 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 13272 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:94,49,0,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 13273 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:94,50,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 13274 . G . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 13275 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:93,52,0,0 0/0:.:50:50:0:0%:26,24,0,0 -Example1_ref 13276 . C T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=7.4737E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:141:1:0.7%:92,49,1,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 13277 . C . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:92,52,0,0 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 13278 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:56:56:0:0%:27,29,0,0 -Example1_ref 13279 . G T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=7.2165E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:139:1:0.71%:90,49,1,0 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 13280 . A . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:89,52,0,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 13281 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:54:54:0:0%:25,29,0,0 -Example1_ref 13282 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:90,51,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13283 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:86,52,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 13284 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:85,54,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 13285 . A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 13286 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:88,54,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 13287 . T . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:88,50,0,0 0/0:.:56:56:0:0%:25,31,0,0 -Example1_ref 13288 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:57:57:0:0%:25,32,0,0 -Example1_ref 13289 . G T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=7.0899E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:133:1:0.75%:82,51,1,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 13290 . C A . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=4.8352E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:140:1:0.71%:90,50,0,1 0/0:.:55:54:1:1.82%:25,29,0,1 -Example1_ref 13291 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:87,52,0,0 0/0:.:61:61:0:0%:27,34,0,0 -Example1_ref 13292 . C . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:89,53,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 13293 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:91,53,0,0 0/0:.:60:59:0:0%:26,33,0,0 -Example1_ref 13294 . C A . PASS DP=231;SS=0;SSC=0;GPV=1E0;SPV=3.0303E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:70:69:1:1.43%:35,34,0,1 -Example1_ref 13295 . T A . PASS DP=230;SS=0;SSC=0;GPV=1E0;SPV=6.9565E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:107,52,1,0 0/0:.:70:70:0:0%:35,35,0,0 -Example1_ref 13296 . C . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:169:169:0:0%:115,54,0,0 0/0:.:74:73:0:0%:37,36,0,0 -Example1_ref 13297 . T . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:170:170:0:0%:114,56,0,0 0/0:.:74:74:0:0%:39,35,0,0 -Example1_ref 13298 . A . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:122,56,0,0 0/0:.:80:80:0:0%:40,40,0,0 -Example1_ref 13299 . T . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:179:179:0:0%:123,56,0,0 0/0:.:81:81:0:0%:41,40,0,0 -Example1_ref 13300 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:124,57,0,0 0/0:.:80:80:0:0%:40,40,0,0 -Example1_ref 13301 . T . PASS DP=264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:125,56,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 13302 . G . PASS DP=260;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:121,57,0,0 0/0:.:82:82:0:0%:40,42,0,0 -Example1_ref 13303 . T . PASS DP=253;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:122,51,0,0 0/0:.:80:80:0:0%:39,41,0,0 -Example1_ref 13304 . G . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:174:174:0:0%:119,55,0,0 0/0:.:77:77:0:0%:36,41,0,0 -Example1_ref 13305 . A . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:119,54,0,0 0/0:.:79:79:0:0%:37,42,0,0 -Example1_ref 13306 . A C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=6.7883E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:122,63,1,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 13307 . T . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:123,66,0,0 0/0:.:85:85:0:0%:39,46,0,0 -Example1_ref 13308 . A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:122,64,0,0 0/0:.:87:87:0:0%:38,49,0,0 -Example1_ref 13309 . T C . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=6.8498E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:121,65,0,1 0/0:.:86:86:0:0%:39,47,0,0 -Example1_ref 13310 . T . PASS DP=277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:191:191:0:0%:122,69,0,0 0/0:.:86:86:0:0%:38,48,0,0 -Example1_ref 13311 . C A . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=3.1502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:122,65,0,0 0/0:.:86:85:1:1.16%:39,46,0,1 -Example1_ref 13312 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:119,68,0,0 0/0:.:88:88:0:0%:39,49,0,0 -Example1_ref 13313 . C . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:119,68,0,0 0/0:.:84:84:0:0%:39,45,0,0 -Example1_ref 13314 . T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:119,67,0,0 0/0:.:87:87:0:0%:39,48,0,0 -Example1_ref 13315 . G T . PASS DP=273;SS=0;SSC=0;GPV=1E0;SPV=6.8132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:1:0.54%:121,64,0,1 0/0:.:87:87:0:0%:40,47,0,0 -Example1_ref 13316 . G A . PASS DP=271;SS=0;SSC=0;GPV=1E0;SPV=3.1734E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:185:0:0%:115,70,0,0 0/0:.:86:85:1:1.16%:38,47,0,1 -Example1_ref 13317 . A G . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=5.4824E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:185:184:1:0.54%:119,65,0,1 0/0:.:90:89:1:1.11%:41,48,0,1 -Example1_ref 13318 . T . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:122,68,0,0 0/0:.:86:86:0:0%:41,45,0,0 -Example1_ref 13319 . C CGGAGA . PASS DP=272;SS=0;SSC=0;GPV=1E0;SPV=6.7647E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:1:0.54%:118,65,0,1 0/0:.:88:88:0:0%:41,47,0,0 -Example1_ref 13320 . T . PASS DP=280;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:190:190:0:0%:121,69,0,0 0/0:.:90:90:0:0%:43,47,0,0 -Example1_ref 13321 . G . PASS DP=312;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:143,71,0,0 0/0:.:98:98:0:0%:50,48,0,0 -Example1_ref 13322 . T . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:225:0:0%:145,80,0,0 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 13323 . T G . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=6.8966E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:219:1:0.45%:143,76,0,1 0/0:.:99:99:0:0%:49,50,0,0 -Example1_ref 13324 . T . PASS DP=321;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:220:220:0:0%:141,79,0,0 0/0:.:101:101:0:0%:49,52,0,0 -Example1_ref 13325 . A . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:136,80,0,0 0/0:.:103:103:0:0%:47,56,0,0 -Example1_ref 13326 . TGA T . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=6.8308E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:221:1:0.45%:141,80,0,1 0/0:.:103:103:0:0%:48,55,0,0 -Example1_ref 13327 . G A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=5.371E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:225:223:1:0.45%:139,84,0,1 0/0:.:105:104:1:0.95%:49,55,0,1 -Example1_ref 13328 . A AG . PASS DP=333;SS=0;SSC=0;GPV=1E0;SPV=6.8373E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:226:1:0.44%:141,85,0,1 0/0:.:105:105:0:0%:49,56,0,0 -Example1_ref 13329 . G T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=6.8485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:225:1:0.44%:140,85,1,0 0/0:.:104:104:0:0%:48,56,0,0 -Example1_ref 13330 . A . PASS DP=325;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:139,85,0,0 0/0:.:101:101:0:0%:48,53,0,0 -Example1_ref 13331 . G . PASS DP=324;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:221:221:0:0%:142,79,0,0 0/0:.:103:103:0:0%:48,55,0,0 -Example1_ref 13332 . A AC . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=6.9184E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:228:1:0.44%:140,88,0,1 0/0:.:102:102:0:0%:48,54,0,0 -Example1_ref 13333 . A C . PASS DP=336;SS=0;SSC=0;GPV=1E0;SPV=5.2388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:231:1:0.43%:139,92,0,1 0/0:.:104:103:1:0.96%:47,56,0,1 -Example1_ref 13334 . T A . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=5.2134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:233:1:0.43%:142,91,0,1 0/0:.:104:103:1:0.96%:49,54,0,1 -Example1_ref 13335 . G . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:140,94,0,0 0/0:.:109:109:0:0%:50,59,0,0 -Example1_ref 13336 . G T . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=3.2194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:144,94,0,0 0/0:.:113:112:1:0.88%:52,60,1,0 -Example1_ref 13337 . T . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:148,99,0,0 0/0:.:113:113:0:0%:54,59,0,0 -Example1_ref 13338 . TG T . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=3.1198E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:149,98,0,0 0/0:.:112:111:1:0.89%:53,58,1,0 -Example1_ref 13339 . G A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=3.1092E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:149,97,0,0 0/0:.:112:110:1:0.9%:53,57,0,1 -Example1_ref 13340 . A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:150,98,0,0 0/0:.:114:114:0:0%:54,60,0,0 -Example1_ref 13341 . A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:149,100,0,0 0/0:.:112:112:0:0%:51,61,0,0 -Example1_ref 13342 . T C . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=6.9421E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:251:1:0.4%:154,97,0,1 0/0:.:111:111:0:0%:53,58,0,0 -Example1_ref 13343 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:157,100,0,0 0/0:.:111:111:0:0%:52,59,0,0 -Example1_ref 13344 . G . PASS DP=377;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:160,100,0,0 0/0:.:117:117:0:0%:56,61,0,0 -Example1_ref 13345 . T . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:266:0:0%:163,103,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 13346 . G . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:165,102,0,0 0/0:.:115:115:0:0%:56,59,0,0 -Example1_ref 13347 . T A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=6.9531E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:164,102,1,0 0/0:.:117:117:0:0%:57,60,0,0 -Example1_ref 13348 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:163,104,0,0 0/0:.:117:117:0:0%:56,61,0,0 -Example1_ref 13349 . T TAAGA . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=5.113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:262:1:0.38%:161,101,0,1 0/0:.:113:112:1:0.88%:55,57,0,1 -Example1_ref 13350 . C . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:161,103,0,0 0/0:.:116:116:0:0%:59,57,0,0 -Example1_ref 13351 . A . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:160,103,0,0 0/0:.:117:117:0:0%:57,60,0,0 -Example1_ref 13352 . C . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:163,101,0,0 0/0:.:115:115:0:0%:60,55,0,0 -Example1_ref 13353 . T . PASS DP=381;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:163,101,0,0 0/0:.:117:117:0:0%:59,58,0,0 -Example1_ref 13354 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:161,103,0,0 0/0:.:118:118:0:0%:59,59,0,0 -Example1_ref 13355 . G T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=3.099E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:162,103,0,0 0/0:.:119:118:1:0.84%:59,59,1,0 -Example1_ref 13356 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:160,107,0,0 0/0:.:117:117:0:0%:61,56,0,0 -Example1_ref 13357 . A . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:165,108,0,0 0/0:.:121:121:0:0%:61,60,0,0 -Example1_ref 13358 . A . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:172,107,0,0 0/0:.:119:119:0:0%:62,57,0,0 -Example1_ref 13359 . T . PASS DP=398;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:173,109,0,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 13360 . A . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:175,110,0,0 0/0:.:121:121:0:0%:63,58,0,0 -Example1_ref 13361 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:174,112,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 13362 . A AG . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=7.0146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:174,114,0,1 0/0:.:123:123:0:0%:62,61,0,0 -Example1_ref 13363 . C . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:175,116,0,0 0/0:.:118:118:0:0%:61,57,0,0 -Example1_ref 13364 . A ACTGTCTC . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=5.068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:292:1:0.34%:178,114,1,0 0/0:.:124:123:1:0.81%:61,62,1,0 -Example1_ref 13365 . T . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:177,111,0,0 0/0:.:122:122:0:0%:62,60,0,0 -Example1_ref 13366 . T . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:178,120,0,0 0/0:.:123:123:0:0%:62,61,0,0 -Example1_ref 13367 . T . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:178,120,0,0 0/0:.:122:122:0:0%:58,64,0,0 -Example1_ref 13368 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:171,124,0,0 0/0:.:125:125:0:0%:60,65,0,0 -Example1_ref 13369 . T . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:175,127,0,0 0/0:.:125:125:0:0%:60,65,0,0 -Example1_ref 13370 . G T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=7.0465E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:172,130,1,0 0/0:.:127:127:0:0%:58,69,0,0 -Example1_ref 13371 . A G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=6.9838E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:170,130,1,0 0/0:.:130:130:0:0%:60,70,0,0 -Example1_ref 13372 . C . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:172,124,0,0 0/0:.:129:129:0:0%:60,69,0,0 -Example1_ref 13373 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:165,127,0,0 0/0:.:129:129:0:0%:60,69,0,0 -Example1_ref 13374 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:166,125,0,0 0/0:.:127:127:0:0%:58,69,0,0 -Example1_ref 13375 . C . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:168,128,0,0 0/0:.:125:125:0:0%:61,64,0,0 -Example1_ref 13376 . G A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=3.0024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:166,130,0,0 0/0:.:127:126:1:0.79%:60,66,0,1 -Example1_ref 13377 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:167,130,0,0 0/0:.:135:135:0:0%:64,71,0,0 -Example1_ref 13378 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:171,131,0,0 0/0:.:134:134:0:0%:64,70,0,0 -Example1_ref 13379 . A G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=3.0645E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:170,131,0,0 0/0:.:133:132:1:0.75%:61,71,1,0 -Example1_ref 13380 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:166,131,0,0 0/0:.:133:133:0:0%:63,70,0,0 -Example1_ref 13381 . G . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:165,130,0,0 0/0:.:134:134:0:0%:64,70,0,0 -Example1_ref 13382 . G A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=5.2121E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:296:1:0.34%:165,131,1,0 0/0:.:132:131:1:0.76%:61,70,0,1 -Example1_ref 13383 . A G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=5.1948E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:1:0.33%:169,131,0,1 0/0:.:133:132:1:0.75%:61,71,1,0 -Example1_ref 13384 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:168,129,0,0 0/0:.:133:133:0:0%:62,71,0,0 -Example1_ref 13385 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:167,129,0,0 0/0:.:134:134:0:0%:63,71,0,0 -Example1_ref 13386 . T . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:169,130,0,0 0/0:.:132:132:0:0%:64,68,0,0 -Example1_ref 13387 . A G . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=6.8618E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:292:1:0.34%:168,124,0,1 0/0:.:134:134:0:0%:64,70,0,0 -Example1_ref 13388 . G . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:168,124,0,0 0/0:.:133:133:0:0%:64,69,0,0 -Example1_ref 13389 . C . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:166,126,0,0 0/0:.:128:128:0:0%:62,66,0,0 -Example1_ref 13390 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:166,130,0,0 0/0:.:134:134:0:0%:64,70,0,0 -Example1_ref 13391 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:166,130,0,0 0/0:.:134:134:0:0%:63,71,0,0 -Example1_ref 13392 . A . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:292:0:0%:162,130,0,0 0/0:.:135:135:0:0%:64,71,0,0 -Example1_ref 13393 . T C . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=6.8384E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:291:1:0.34%:163,128,1,0 0/0:.:135:135:0:0%:64,71,0,0 -Example1_ref 13394 . G . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:164,126,0,0 0/0:.:136:136:0:0%:64,72,0,0 -Example1_ref 13395 . A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:165,130,0,0 0/0:.:137:137:0:0%:65,72,0,0 -Example1_ref 13396 . C . PASS DP=428;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:0:0%:167,126,0,0 0/0:.:134:134:0:0%:65,69,0,0 -Example1_ref 13397 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:165,135,0,0 0/0:.:136:136:0:0%:65,71,0,0 -Example1_ref 13398 . G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:165,135,0,0 0/0:.:131:131:0:0%:63,68,0,0 -Example1_ref 13399 . G . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:297:0:0%:162,135,0,0 0/0:.:134:134:0:0%:64,70,0,0 -Example1_ref 13400 . A C . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=6.8349E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:163,134,0,1 0/0:.:138:138:0:0%:66,72,0,0 -Example1_ref 13401 . A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:165,136,0,0 0/0:.:134:134:0:0%:66,68,0,0 -Example1_ref 13402 . A T . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=6.9318E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:166,138,1,0 0/0:.:135:135:0:0%:64,71,0,0 -Example1_ref 13403 . C . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:165,134,0,0 0/0:.:140:140:0:0%:67,73,0,0 -Example1_ref 13404 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:291:0:0%:165,126,0,0 0/0:.:138:138:0:0%:66,72,0,0 -Example1_ref 13405 . A G . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=6.8037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:165,132,0,1 0/0:.:140:140:0:0%:67,73,0,0 -Example1_ref 13406 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:162,133,0,0 0/0:.:137:137:0:0%:65,72,0,0 -Example1_ref 13407 . C A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=6.8246E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:1:0.35%:163,124,0,1 0/0:.:134:134:0:0%:64,70,0,0 -Example1_ref 13408 . C . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:165,131,0,0 0/0:.:135:135:0:0%:64,71,0,0 -Example1_ref 13409 . T . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:162,128,0,0 0/0:.:135:135:0:0%:64,71,0,0 -Example1_ref 13410 . T . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:165,135,0,0 0/0:.:139:139:0:0%:65,74,0,0 -Example1_ref 13411 . C G . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=6.8203E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:162,133,0,1 0/0:.:138:138:0:0%:63,75,0,0 -Example1_ref 13412 . A AT . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=6.7727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:163,134,0,1 0/0:.:142:142:0:0%:66,76,0,0 -Example1_ref 13413 . T A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=6.8623E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:168,135,0,1 0/0:.:139:139:0:0%:68,71,0,0 -Example1_ref 13414 . T C . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=6.8539E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:304:1:0.33%:170,134,1,0 0/0:.:140:140:0:0%:66,74,0,0 -Example1_ref 13415 . T . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:171,135,0,0 0/0:.:142:142:0:0%:68,74,0,0 -Example1_ref 13416 . C . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:172,139,0,0 0/0:.:139:139:0:0%:67,72,0,0 -Example1_ref 13417 . T . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:172,141,0,0 0/0:.:144:144:0:0%:67,77,0,0 -Example1_ref 13418 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:169,142,0,0 0/0:.:149:149:0:0%:68,81,0,0 -Example1_ref 13419 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:169,142,0,0 0/0:.:147:147:0:0%:66,81,0,0 -Example1_ref 13420 . A . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:164,148,0,0 0/0:.:147:147:0:0%:66,81,0,0 -Example1_ref 13421 . C . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:168,142,0,0 0/0:.:143:143:0:0%:66,77,0,0 -Example1_ref 13422 . AC A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=5.3832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:309:1:0.32%:167,142,0,1 0/0:.:146:145:1:0.68%:66,79,0,1 -Example1_ref 13423 . C A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=4.7218E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:306:2:0.65%:170,136,0,2 0/0:.:140:140:0:0%:67,73,0,0 -Example1_ref 13424 . C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:168,142,0,0 0/0:.:144:143:0:0%:65,78,0,0 -Example1_ref 13425 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:0:0%:169,147,0,0 0/0:.:146:146:0:0%:66,80,0,0 -Example1_ref 13426 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:167,147,0,0 0/0:.:149:149:0:0%:69,80,0,0 -Example1_ref 13427 . T . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:166,150,0,0 0/0:.:146:146:0:0%:67,79,0,0 -Example1_ref 13428 . C . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:167,147,0,0 0/0:.:147:147:0:0%:67,80,0,0 -Example1_ref 13429 . A . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:168,155,0,0 0/0:.:150:150:0:0%:66,84,0,0 -Example1_ref 13430 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:169,153,0,0 0/0:.:150:150:0:0%:67,83,0,0 -Example1_ref 13431 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:319:0:0%:166,153,0,0 0/0:.:152:152:0:0%:68,84,0,0 -Example1_ref 13432 . T . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:169,153,0,0 0/0:.:149:149:0:0%:67,82,0,0 -Example1_ref 13433 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:168,150,0,0 0/0:.:150:150:0:0%:68,82,0,0 -Example1_ref 13434 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:168,146,0,0 0/0:.:149:149:0:0%:68,81,0,0 -Example1_ref 13435 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:165,144,0,0 0/0:.:147:147:0:0%:67,80,0,0 -Example1_ref 13436 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:164,150,0,0 0/0:.:149:149:0:0%:67,82,0,0 -Example1_ref 13437 . G . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:164,151,0,0 0/0:.:149:149:0:0%:67,82,0,0 -Example1_ref 13438 . T TC . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=6.8103E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:164,151,1,0 0/0:.:148:148:0:0%:68,80,0,0 -Example1_ref 13439 . T . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:165,148,0,0 0/0:.:148:148:0:0%:67,81,0,0 -Example1_ref 13440 . G T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=6.8026E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:1:0.32%:165,151,1,0 0/0:.:149:149:0:0%:68,81,0,0 -Example1_ref 13441 . T . PASS DP=464;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:167,150,0,0 0/0:.:147:147:0:0%:66,81,0,0 -Example1_ref 13442 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:166,150,0,0 0/0:.:147:147:0:0%:66,81,0,0 -Example1_ref 13443 . T . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:166,149,0,0 0/0:.:150:150:0:0%:68,82,0,0 -Example1_ref 13444 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:154,150,0,0 0/0:.:142:142:0:0%:61,81,0,0 -Example1_ref 13445 . G . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:153,150,0,0 0/0:.:138:138:0:0%:57,81,0,0 -Example1_ref 13446 . C A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=3.1614E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:156,149,0,0 0/0:.:141:140:1:0.71%:60,80,1,0 -Example1_ref 13447 . A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:156,148,0,0 0/0:.:139:139:0:0%:59,80,0,0 -Example1_ref 13448 . G . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:157,150,0,0 0/0:.:138:138:0:0%:59,79,0,0 -Example1_ref 13449 . A . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:155,148,0,0 0/0:.:140:140:0:0%:60,80,0,0 -Example1_ref 13450 . A . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:151,149,0,0 0/0:.:135:135:0:0%:56,79,0,0 -Example1_ref 13451 . A . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:154,156,0,0 0/0:.:141:141:0:0%:59,82,0,0 -Example1_ref 13452 . T . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:156,150,0,0 0/0:.:141:141:0:0%:61,80,0,0 -Example1_ref 13453 . T C . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=3.2009E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:145:144:1:0.69%:60,84,1,0 -Example1_ref 13454 . G GTATAAGAGA . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=3.1696E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:153,153,0,0 0/0:.:142:141:1:0.7%:59,82,0,1 -Example1_ref 13455 . C . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:154,153,0,0 0/0:.:141:141:0:0%:61,80,0,0 -Example1_ref 13456 . AT A . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=6.8597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:307:1:0.32%:152,155,0,1 0/0:.:141:141:0:0%:59,82,0,0 -Example1_ref 13457 . T . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:306:0:0%:154,152,0,0 0/0:.:140:140:0:0%:60,80,0,0 -Example1_ref 13458 . C . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:151,155,0,0 0/0:.:141:141:0:0%:60,81,0,0 -Example1_ref 13459 . T . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:151,154,0,0 0/0:.:145:144:0:0%:61,83,0,0 -Example1_ref 13460 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:153,153,0,0 0/0:.:140:140:0:0%:59,81,0,0 -Example1_ref 13461 . T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:152,156,0,0 0/0:.:141:141:0:0%:60,81,0,0 -Example1_ref 13462 . T G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=4.6798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:306:2:0.65%:153,153,1,1 0/0:.:142:142:0:0%:61,81,0,0 -Example1_ref 13463 . G . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:153,155,0,0 0/0:.:141:141:0:0%:60,81,0,0 -Example1_ref 13464 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:151,157,0,0 0/0:.:142:142:0:0%:59,83,0,0 -Example1_ref 13465 . A G . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=5.301E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:309:1:0.32%:150,159,1,0 0/0:.:142:141:1:0.7%:57,84,1,0 -Example1_ref 13466 . C A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=6.8636E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:151,150,0,1 0/0:.:138:138:0:0%:59,79,0,0 -Example1_ref 13467 . C . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:151,158,0,0 0/0:.:129:129:0:0%:57,72,0,0 -Example1_ref 13468 . TA T . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=7.0379E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:153,162,1,0 0/0:.:133:133:0:0%:59,74,0,0 -Example1_ref 13469 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:155,162,0,0 0/0:.:135:135:0:0%:59,76,0,0 -Example1_ref 13470 . A . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:154,163,0,0 0/0:.:135:135:0:0%:59,76,0,0 -Example1_ref 13471 . T . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:156,159,0,0 0/0:.:127:127:0:0%:58,69,0,0 -Example1_ref 13472 . C . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:321:0:0%:159,162,0,0 0/0:.:137:137:0:0%:61,76,0,0 -Example1_ref 13473 . T G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=2.9736E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:158,161,0,0 0/0:.:135:134:1:0.74%:59,75,0,1 -Example1_ref 13474 . G C . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=7.0705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:159,161,1,0 0/0:.:133:133:0:0%:58,75,0,0 -Example1_ref 13475 . T . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:162,160,0,0 0/0:.:133:133:0:0%:58,75,0,0 -Example1_ref 13476 . T . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:162,162,0,0 0/0:.:137:137:0:0%:60,77,0,0 -Example1_ref 13477 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:161,165,0,0 0/0:.:136:136:0:0%:59,77,0,0 -Example1_ref 13478 . A . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:154,161,0,0 0/0:.:134:134:0:0%:58,76,0,0 -Example1_ref 13479 . A ACCTGTCT . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=7.0897E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:1:0.31%:161,162,1,0 0/0:.:133:133:0:0%:57,76,0,0 -Example1_ref 13480 . C A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=2.9621E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:158,158,0,0 0/0:.:134:132:1:0.75%:57,75,0,1 -Example1_ref 13481 . T . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:0:0%:159,161,0,0 0/0:.:126:126:0:0%:55,71,0,0 -Example1_ref 13482 . T . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:318:0:0%:158,160,0,0 0/0:.:126:126:0:0%:55,71,0,0 -Example1_ref 13483 . A . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:312:0:0%:153,159,0,0 0/0:.:126:126:0:0%:54,72,0,0 -Example1_ref 13484 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:0:0%:144,159,0,0 0/0:.:120:120:0:0%:48,72,0,0 -Example1_ref 13485 . C . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:141,159,0,0 0/0:.:116:116:0:0%:46,70,0,0 -Example1_ref 13486 . A . PASS DP=417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:139,159,0,0 0/0:.:119:119:0:0%:48,71,0,0 -Example1_ref 13487 . T . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:143,158,0,0 0/0:.:118:118:0:0%:48,70,0,0 -Example1_ref 13488 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:131,158,0,0 0/0:.:118:118:0:0%:48,70,0,0 -Example1_ref 13489 . C . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:0:0%:133,154,0,0 0/0:.:118:118:0:0%:50,68,0,0 -Example1_ref 13490 . T . PASS DP=406;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:0:0%:135,153,0,0 0/0:.:117:117:0:0%:50,67,0,0 -Example1_ref 13491 . T . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:291:290:0:0%:134,156,0,0 0/0:.:118:118:0:0%:51,67,0,0 -Example1_ref 13492 . A . PASS DP=409;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:0:0%:133,155,0,0 0/0:.:120:120:0:0%:51,69,0,0 -Example1_ref 13493 . G T . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=4.9492E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:282:1:0.35%:129,153,1,0 0/0:.:115:114:1:0.87%:46,68,1,0 -Example1_ref 13494 . A . PASS DP=399;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:285:0:0%:131,154,0,0 0/0:.:113:113:0:0%:45,68,0,0 -Example1_ref 13495 . G . PASS DP=400;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:280:0:0%:126,154,0,0 0/0:.:117:116:0:0%:48,68,0,0 -Example1_ref 13496 . A ATTT . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=7.1268E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:252:1:0.4%:122,130,1,0 0/0:.:102:102:0:0%:46,56,0,0 -Example1_ref 13497 . G A . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=7.2346E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:258:1:0.39%:125,133,0,1 0/0:.:99:99:0:0%:42,57,0,0 -Example1_ref 13498 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:263:0:0%:128,135,0,0 0/0:.:103:103:0:0%:46,57,0,0 -Example1_ref 13499 . C CAA . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.2283E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:265:1:0.38%:128,137,1,0 0/0:.:102:102:0:0%:46,56,0,0 -Example1_ref 13500 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:261:0:0%:129,132,0,0 0/0:.:104:104:0:0%:47,57,0,0 -Example1_ref 13501 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:130,137,0,0 0/0:.:103:103:0:0%:46,57,0,0 -Example1_ref 13502 . G . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:127,137,0,0 0/0:.:108:108:0:0%:48,60,0,0 -Example1_ref 13503 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:130,140,0,0 0/0:.:108:108:0:0%:48,60,0,0 -Example1_ref 13504 . T C . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=7.0933E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:266:265:1:0.38%:126,139,1,0 0/0:.:109:109:0:0%:48,61,0,0 -Example1_ref 13505 . C . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:264:264:0:0%:126,138,0,0 0/0:.:105:105:0:0%:45,60,0,0 -Example1_ref 13506 . T . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:127,136,0,0 0/0:.:103:103:0:0%:45,58,0,0 -Example1_ref 13507 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:263:263:0:0%:128,135,0,0 0/0:.:105:105:0:0%:45,60,0,0 -Example1_ref 13508 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:125,132,0,0 0/0:.:105:105:0:0%:46,59,0,0 -Example1_ref 13509 . T . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:123,136,0,0 0/0:.:106:106:0:0%:46,60,0,0 -Example1_ref 13510 . G . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:105,137,0,0 0/0:.:100:100:0:0%:40,60,0,0 -Example1_ref 13511 . A . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:107,132,0,0 0/0:.:96:96:0:0%:38,58,0,0 -Example1_ref 13512 . A G . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=2.9518E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:102,132,0,0 0/0:.:98:97:1:1.02%:40,57,1,0 -Example1_ref 13513 . A . PASS DP=332;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:103,132,0,0 0/0:.:97:97:0:0%:39,58,0,0 -Example1_ref 13514 . C . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:103,131,0,0 0/0:.:97:97:0:0%:41,56,0,0 -Example1_ref 13515 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:103,130,0,0 0/0:.:97:97:0:0%:40,57,0,0 -Example1_ref 13516 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:231:0:0%:103,128,0,0 0/0:.:99:99:0:0%:41,58,0,0 -Example1_ref 13517 . T . PASS DP=320;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:103,120,0,0 0/0:.:97:97:0:0%:41,56,0,0 -Example1_ref 13518 . A . PASS DP=313;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:98,118,0,0 0/0:.:97:97:0:0%:40,57,0,0 -Example1_ref 13519 . T G . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=5.2415E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:213:1:0.47%:94,119,1,0 0/0:.:96:95:1:1.04%:39,56,1,0 -Example1_ref 13520 . C A . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=6.7881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:92,112,1,0 0/0:.:97:97:0:0%:41,56,0,0 -Example1_ref 13521 . T . PASS DP=305;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:208:208:0:0%:95,113,0,0 0/0:.:97:97:0:0%:41,56,0,0 -Example1_ref 13522 . T . PASS DP=303;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:207:207:0:0%:91,116,0,0 0/0:.:96:96:0:0%:40,56,0,0 -Example1_ref 13523 . G . PASS DP=300;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:203:203:0:0%:91,112,0,0 0/0:.:97:97:0:0%:41,56,0,0 -Example1_ref 13524 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:202:202:0:0%:90,112,0,0 0/0:.:96:96:0:0%:40,56,0,0 -Example1_ref 13525 . A . PASS DP=298;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:204:0:0%:92,112,0,0 0/0:.:94:94:0:0%:40,54,0,0 -Example1_ref 13526 . T . PASS DP=294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:199:199:0:0%:86,113,0,0 0/0:.:95:95:0:0%:39,56,0,0 -Example1_ref 13527 . T . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:86,110,0,0 0/0:.:93:93:0:0%:38,55,0,0 -Example1_ref 13528 . A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:86,111,0,0 0/0:.:92:92:0:0%:38,54,0,0 -Example1_ref 13529 . A . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:195:0:0%:84,111,0,0 0/0:.:92:92:0:0%:39,53,0,0 -Example1_ref 13530 . A C . PASS DP=288;SS=0;SSC=0;GPV=1E0;SPV=5.4232E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:195:194:1:0.51%:86,108,0,1 0/0:.:93:92:1:1.08%:38,54,1,0 -Example1_ref 13531 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:83,110,0,0 0/0:.:92:92:0:0%:38,54,0,0 -Example1_ref 13532 . A . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:83,111,0,0 0/0:.:91:91:0:0%:38,53,0,0 -Example1_ref 13533 . T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:193:193:0:0%:81,112,0,0 0/0:.:92:92:0:0%:38,54,0,0 -Example1_ref 13534 . C A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=3.2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:88:87:1:1.14%:35,52,0,1 -Example1_ref 13535 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:89:89:0:0%:36,53,0,0 -Example1_ref 13536 . A . PASS DP=276;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:77,110,0,0 0/0:.:89:88:0:0%:36,52,0,0 -Example1_ref 13537 . A C . PASS DP=274;SS=0;SSC=0;GPV=1E0;SPV=3.2117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:186:0:0%:76,110,0,0 0/0:.:88:87:1:1.14%:34,53,1,0 -Example1_ref 13538 . G T . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=3.2593E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:72,110,0,0 0/0:.:88:87:1:1.14%:35,52,1,0 -Example1_ref 13539 . A . PASS DP=275;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:186:185:0:0%:75,110,0,0 0/0:.:89:89:0:0%:35,54,0,0 -Example1_ref 13540 . A . PASS DP=270;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:184:183:0:0%:73,110,0,0 0/0:.:86:86:0:0%:34,52,0,0 -Example1_ref 13541 . G T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=3.3208E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:177:177:0:0%:67,110,0,0 0/0:.:88:87:1:1.14%:33,54,1,0 -Example1_ref 13542 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:70,111,0,0 0/0:.:88:88:0:0%:34,54,0,0 -Example1_ref 13543 . C . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:71,105,0,0 0/0:.:87:87:0:0%:34,53,0,0 -Example1_ref 13544 . C . PASS DP=259;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:70,106,0,0 0/0:.:83:83:0:0%:32,51,0,0 -Example1_ref 13545 . C . PASS DP=258;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:176:176:0:0%:69,107,0,0 0/0:.:82:82:0:0%:30,52,0,0 -Example1_ref 13546 . T . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:68,105,0,0 0/0:.:82:82:0:0%:31,51,0,0 -Example1_ref 13547 . A . PASS DP=257;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:173:173:0:0%:67,106,0,0 0/0:.:84:84:0:0%:31,53,0,0 -Example1_ref 13548 . C . PASS DP=255;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:171:171:0:0%:65,106,0,0 0/0:.:84:84:0:0%:31,53,0,0 -Example1_ref 13549 . T . PASS DP=243;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:63,102,0,0 0/0:.:78:78:0:0%:31,47,0,0 -Example1_ref 13550 . C . PASS DP=250;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:167:167:0:0%:64,103,0,0 0/0:.:83:83:0:0%:32,51,0,0 -Example1_ref 13551 . T . PASS DP=248;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:64,102,0,0 0/0:.:82:82:0:0%:32,50,0,0 -Example1_ref 13552 . T . PASS DP=246;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:64,101,0,0 0/0:.:81:81:0:0%:31,50,0,0 -Example1_ref 13553 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:62,101,0,0 0/0:.:82:82:0:0%:32,50,0,0 -Example1_ref 13554 . A . PASS DP=245;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:60,104,0,0 0/0:.:81:81:0:0%:32,49,0,0 -Example1_ref 13555 . A . PASS DP=244;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:59,104,0,0 0/0:.:81:81:0:0%:32,49,0,0 -Example1_ref 13556 . T . PASS DP=234;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:59,97,0,0 0/0:.:78:78:0:0%:31,47,0,0 -Example1_ref 13557 . A C . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=6.6527E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:158:1:0.63%:61,97,1,0 0/0:.:80:80:0:0%:32,48,0,0 -Example1_ref 13558 . T . PASS DP=229;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:62,90,0,0 0/0:.:77:77:0:0%:31,46,0,0 -Example1_ref 13559 . G A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=3.2287E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:151:151:0:0%:64,87,0,0 0/0:.:72:71:1:1.39%:30,41,0,1 -Example1_ref 13560 . T . PASS DP=221;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:149:149:0:0%:62,87,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 13561 . A . PASS DP=222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:72:72:0:0%:31,41,0,0 -Example1_ref 13562 . C . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:72:72:0:0%:32,40,0,0 -Example1_ref 13563 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:62,88,0,0 0/0:.:73:73:0:0%:32,41,0,0 -Example1_ref 13564 . A . PASS DP=219;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:60,88,0,0 0/0:.:71:71:0:0%:31,40,0,0 -Example1_ref 13565 . A . PASS DP=223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:152:152:0:0%:61,91,0,0 0/0:.:71:71:0:0%:29,42,0,0 -Example1_ref 13566 . T C . PASS DP=225;SS=0;SSC=0;GPV=1E0;SPV=6.9333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:155:1:0.64%:63,92,1,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13567 . A . PASS DP=224;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:62,93,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13568 . T C . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=3.1481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:68:67:1:1.47%:28,39,0,1 -Example1_ref 13569 . C . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:60,86,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13570 . T . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:61,87,0,0 0/0:.:70:70:0:0%:28,42,0,0 -Example1_ref 13571 . G . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 13572 . G T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=6.8519E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:147:1:0.68%:58,89,1,0 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 13573 . A T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=6.7907E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:145:1:0.68%:57,88,0,1 0/0:.:69:69:0:0%:27,42,0,0 -Example1_ref 13574 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:60,88,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 13575 . T . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:61,85,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13576 . A . PASS DP=217;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:62,86,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13577 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:62,85,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13578 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:61,86,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13579 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:60,85,0,0 0/0:.:70:70:0:0%:29,41,0,0 -Example1_ref 13580 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:60,84,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 13581 . T . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:60,82,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 13582 . T . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:61,83,0,0 0/0:.:69:69:0:0%:29,40,0,0 -Example1_ref 13583 . A . PASS DP=213;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:61,84,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 13584 . A . PASS DP=211;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:60,84,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 13585 . G . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:57,83,0,0 0/0:.:66:66:0:0%:27,39,0,0 -Example1_ref 13586 . T . PASS DP=204;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:60,77,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 13587 . C . PASS DP=202;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:59,78,0,0 0/0:.:65:65:0:0%:26,39,0,0 -Example1_ref 13588 . A . PASS DP=203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:136:136:0:0%:60,76,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 13589 . T . PASS DP=200;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:135:135:0:0%:60,75,0,0 0/0:.:65:65:0:0%:27,38,0,0 -Example1_ref 13590 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:58,71,0,0 0/0:.:67:67:0:0%:26,41,0,0 -Example1_ref 13591 . C . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:65:65:0:0%:26,39,0,0 -Example1_ref 13592 . C A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=6.5464E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:126:1:0.79%:55,71,0,1 0/0:.:67:67:0:0%:26,41,0,0 -Example1_ref 13593 . C . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:55,74,0,0 0/0:.:65:65:0:0%:25,40,0,0 -Example1_ref 13594 . A . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:58,75,0,0 0/0:.:66:66:0:0%:25,41,0,0 -Example1_ref 13595 . T . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:65:65:0:0%:25,40,0,0 -Example1_ref 13596 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:58,72,0,0 0/0:.:69:69:0:0%:28,41,0,0 -Example1_ref 13597 . A . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:59,74,0,0 0/0:.:68:68:0:0%:28,40,0,0 -Example1_ref 13598 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:57,74,0,0 0/0:.:64:64:0:0%:24,40,0,0 -Example1_ref 13599 . C . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:58,73,0,0 0/0:.:68:68:0:0%:29,39,0,0 -Example1_ref 13600 . T . PASS DP=198;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:57,75,0,0 0/0:.:66:66:0:0%:28,38,0,0 -Example1_ref 13601 . G . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:132:132:0:0%:58,74,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 13602 . T . PASS DP=201;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:134:134:0:0%:60,74,0,0 0/0:.:67:67:0:0%:28,39,0,0 -Example1_ref 13603 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:130:130:0:0%:54,76,0,0 0/0:.:65:65:0:0%:27,38,0,0 -Example1_ref 13604 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:53,75,0,0 0/0:.:66:65:0:0%:27,38,0,0 -Example1_ref 13605 . C . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:53,71,0,0 0/0:.:63:63:0:0%:24,39,0,0 -Example1_ref 13606 . A . PASS DP=195;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:127:127:0:0%:54,73,0,0 0/0:.:68:68:0:0%:27,41,0,0 -Example1_ref 13607 . T G . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=3.2979E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:53,73,0,0 0/0:.:62:61:1:1.61%:26,35,0,1 -Example1_ref 13608 . A . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:54,70,0,0 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 13609 . T . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:57,71,0,0 0/0:.:62:62:0:0%:26,36,0,0 -Example1_ref 13610 . G . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:126:126:0:0%:57,69,0,0 0/0:.:63:63:0:0%:27,36,0,0 -Example1_ref 13611 . T . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:125:125:0:0%:57,68,0,0 0/0:.:64:64:0:0%:28,36,0,0 -Example1_ref 13612 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:123:123:0:0%:55,68,0,0 0/0:.:65:65:0:0%:29,36,0,0 -Example1_ref 13613 . A G . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=3.3696E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:122:122:0:0%:53,69,0,0 0/0:.:62:61:1:1.61%:26,35,1,0 -Example1_ref 13614 . G . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:120:120:0:0%:51,69,0,0 0/0:.:60:60:0:0%:26,34,0,0 -Example1_ref 13615 . A T . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=3.3516E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:121:121:0:0%:52,69,0,0 0/0:.:61:60:1:1.64%:26,34,1,0 -Example1_ref 13616 . A . PASS DP=180;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:119:119:0:0%:50,69,0,0 0/0:.:61:61:0:0%:26,35,0,0 -Example1_ref 13617 . A T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=6.5537E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:115:1:0.86%:50,65,1,0 0/0:.:61:61:0:0%:26,35,0,0 -Example1_ref 13618 . G . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:51,65,0,0 0/0:.:60:60:0:0%:26,34,0,0 -Example1_ref 13619 . A T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=6.5698E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:51,61,0,1 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 13620 . C . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:53,61,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 13621 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:51,62,0,0 0/0:.:59:59:0:0%:26,33,0,0 -Example1_ref 13622 . G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:52,60,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 13623 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:57:57:0:0%:24,33,0,0 -Example1_ref 13624 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:53,63,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 13625 . A . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:118:118:0:0%:54,64,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 13626 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:53,62,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 13627 . C . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 13628 . A . PASS DP=173;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 13629 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:51,63,0,0 0/0:.:56:56:0:0%:24,32,0,0 -Example1_ref 13630 . A G . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=6.5294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:49,61,0,1 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 13631 . T . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:49,58,0,0 0/0:.:59:59:0:0%:25,34,0,0 -Example1_ref 13632 . A . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:49,59,0,0 0/0:.:61:61:0:0%:28,33,0,0 -Example1_ref 13633 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:53,60,0,0 0/0:.:62:62:0:0%:28,34,0,0 -Example1_ref 13634 . T . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:52,62,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 13635 . T . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:52,63,0,0 0/0:.:60:60:0:0%:27,33,0,0 -Example1_ref 13636 . A . PASS DP=176;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:52,64,0,0 0/0:.:60:60:0:0%:26,34,0,0 -Example1_ref 13637 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:117:117:0:0%:53,64,0,0 0/0:.:61:61:0:0%:27,34,0,0 -Example1_ref 13638 . G . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:52,64,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 13639 . G . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:46,63,0,0 0/0:.:58:58:0:0%:25,33,0,0 -Example1_ref 13640 . A . PASS DP=174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:116:116:0:0%:52,64,0,0 0/0:.:58:58:0:0%:24,34,0,0 -Example1_ref 13641 . T . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:56:56:0:0%:26,30,0,0 -Example1_ref 13642 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 13643 . C . PASS DP=166;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:50,60,0,0 0/0:.:56:56:0:0%:25,31,0,0 -Example1_ref 13644 . G C . PASS DP=167;SS=0;SSC=0;GPV=1E0;SPV=3.4731E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:49,60,0,0 0/0:.:58:57:1:1.72%:26,31,1,0 -Example1_ref 13645 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:54,59,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 13646 . G GGT . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=3.3728E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:53,59,0,0 0/0:.:57:56:1:1.75%:26,30,1,0 -Example1_ref 13647 . G . PASS DP=169;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:54,60,0,0 0/0:.:55:55:0:0%:24,31,0,0 -Example1_ref 13648 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:56,57,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 13649 . A . PASS DP=171;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:59:59:0:0%:27,32,0,0 -Example1_ref 13650 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:53,58,0,0 0/0:.:59:59:0:0%:27,32,0,0 -Example1_ref 13651 . T . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:58:58:0:0%:27,31,0,0 -Example1_ref 13652 . A . PASS DP=170;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:54,58,0,0 0/0:.:58:58:0:0%:26,32,0,0 -Example1_ref 13653 . G . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:48,59,0,0 0/0:.:56:56:0:0%:25,31,0,0 -Example1_ref 13654 . T . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:54,57,0,0 0/0:.:57:57:0:0%:27,30,0,0 -Example1_ref 13655 . C . PASS DP=165;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:107:0:0%:51,56,0,0 0/0:.:57:57:0:0%:26,31,0,0 -Example1_ref 13656 . C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:101:0:0%:47,54,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13657 . A AAGATATTGTTT . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=3.5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:50,54,0,0 0/0:.:56:55:1:1.79%:25,30,1,0 -Example1_ref 13658 . C . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:48,50,0,0 0/0:.:52:52:0:0%:26,26,0,0 -Example1_ref 13659 . C . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 13660 . T . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:48,54,0,0 0/0:.:55:55:0:0%:25,30,0,0 -Example1_ref 13661 . G . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:47,53,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 13662 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:46,53,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13663 . G . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:46,55,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 13664 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:99:0:0%:45,54,0,0 0/0:.:53:53:0:0%:23,30,0,0 -Example1_ref 13665 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:47,53,0,0 0/0:.:54:54:0:0%:24,30,0,0 -Example1_ref 13666 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:45,48,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 13667 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:45,50,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 13668 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:45,50,0,0 0/0:.:50:50:0:0%:23,27,0,0 -Example1_ref 13669 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:43,52,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 13670 . G T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=6.4336E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:92:91:1:1.09%:40,51,1,0 0/0:.:51:51:0:0%:23,28,0,0 -Example1_ref 13671 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:42,52,0,0 0/0:.:50:50:0:0%:21,29,0,0 -Example1_ref 13672 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:42,51,0,0 0/0:.:52:52:0:0%:23,29,0,0 -Example1_ref 13673 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:42,51,0,0 0/0:.:52:52:0:0%:22,30,0,0 -Example1_ref 13674 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:42,55,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 13675 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:95:0:0%:42,53,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 13676 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:42,55,0,0 0/0:.:55:55:0:0%:23,32,0,0 -Example1_ref 13677 . G . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:40,56,0,0 0/0:.:53:53:0:0%:21,32,0,0 -Example1_ref 13678 . G T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1.2978E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:39,56,0,0 0/0:.:54:52:2:3.7%:20,32,2,0 -Example1_ref 13679 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:40,58,0,0 0/0:.:50:50:0:0%:19,31,0,0 -Example1_ref 13680 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:39,57,0,0 0/0:.:53:53:0:0%:21,32,0,0 -Example1_ref 13681 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:40,58,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 13682 . C . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:41,52,0,0 0/0:.:54:54:0:0%:23,31,0,0 -Example1_ref 13683 . C . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:45,54,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 13684 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:45,59,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 13685 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:45,58,0,0 0/0:.:53:53:0:0%:21,32,0,0 -Example1_ref 13686 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:45,59,0,0 0/0:.:54:54:0:0%:22,32,0,0 -Example1_ref 13687 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:43,57,0,0 0/0:.:53:53:0:0%:22,31,0,0 -Example1_ref 13688 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:44,57,0,0 0/0:.:51:51:0:0%:21,30,0,0 -Example1_ref 13689 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:44,55,0,0 0/0:.:51:51:0:0%:21,30,0,0 -Example1_ref 13690 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:44,55,0,0 0/0:.:51:51:0:0%:22,29,0,0 -Example1_ref 13691 . G . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:43,55,0,0 0/0:.:49:49:0:0%:20,29,0,0 -Example1_ref 13692 . A . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:93:93:0:0%:43,50,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 13693 . T . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:44,51,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 13694 . G . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:96:96:0:0%:46,50,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13695 . A . PASS DP=140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:94:94:0:0%:46,48,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 13696 . A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:97:97:0:0%:47,50,0,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 13697 . A G . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=6.8056E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:97:1:1.02%:46,51,1,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 13698 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:47,54,0,0 0/0:.:45:45:0:0%:19,26,0,0 -Example1_ref 13699 . T . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:47,52,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 13700 . A G . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=6.8707E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:100:1:0.99%:47,53,1,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 13701 . T . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:48,53,0,0 0/0:.:46:46:0:0%:20,26,0,0 -Example1_ref 13702 . G . PASS DP=139;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:95:95:0:0%:46,49,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13703 . C . PASS DP=143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:99:99:0:0%:48,51,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13704 . T . PASS DP=142;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:98:0:0%:47,51,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13705 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13706 . G . PASS DP=141;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:100:100:0:0%:49,51,0,0 0/0:.:41:41:0:0%:17,24,0,0 -Example1_ref 13707 . A . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:50,52,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13708 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13709 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:50,53,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13710 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:51,53,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13711 . C G . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=7.1233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:51,52,0,1 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13712 . ATT A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=7.0068E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:52,50,0,1 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13713 . T TC . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=6.9863E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:101:1:0.98%:51,50,1,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13714 . T . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:104:0:0%:53,51,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13715 . G . PASS DP=145;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:51,52,0,0 0/0:.:42:42:0:0%:18,24,0,0 -Example1_ref 13716 . T A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=7.0748E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:103:1:0.96%:52,51,0,1 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 13717 . C A . PASS DP=144;SS=0;SSC=0;GPV=1E0;SPV=2.9167E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:102:102:0:0%:50,52,0,0 0/0:.:42:41:1:2.38%:20,21,0,1 -Example1_ref 13718 . A . PASS DP=147;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:52,52,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13719 . A G . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=7.0548E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:51,51,0,1 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13720 . A G . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=3.0128E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:48:46:1:2.13%:19,27,0,1 -Example1_ref 13721 . T . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:48:48:0:0%:21,27,0,0 -Example1_ref 13722 . C T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=7.0253E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:110:1:0.9%:58,52,1,0 0/0:.:47:47:0:0%:21,26,0,0 -Example1_ref 13723 . T . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:59,54,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 13724 . A . PASS DP=163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:114:114:0:0%:59,55,0,0 0/0:.:49:49:0:0%:21,28,0,0 -Example1_ref 13725 . T . PASS DP=159;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:57,55,0,0 0/0:.:47:47:0:0%:19,28,0,0 -Example1_ref 13726 . A . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:55,55,0,0 0/0:.:48:48:0:0%:20,28,0,0 -Example1_ref 13727 . A AGAGACAG . PASS DP=157;SS=0;SSC=0;GPV=1E0;SPV=7.0064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:109:1:0.91%:55,54,0,1 0/0:.:47:47:0:0%:20,27,0,0 -Example1_ref 13728 . G GCTGTCTC . PASS DP=160;SS=0;SSC=0;GPV=1E0;SPV=3.125E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:56,54,0,0 0/0:.:50:49:1:2%:21,28,1,0 -Example1_ref 13729 . T . PASS DP=158;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:58,53,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 13730 . G . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:56,53,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 13731 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:55,52,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13732 . T A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=7.0395E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:106:1:0.93%:55,51,0,1 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13733 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13734 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:104:104:0:0%:54,50,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13735 . C . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 13736 . T A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=7E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:104:1:0.95%:56,48,0,1 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13737 . G . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 13738 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 13739 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 13740 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 13741 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:44:44:0:0%:21,23,0,0 -Example1_ref 13742 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 13743 . A ACTGT . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=6.8667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:102:1:0.97%:52,50,1,0 0/0:.:47:47:0:0%:22,25,0,0 -Example1_ref 13744 . A . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:101:101:0:0%:55,46,0,0 0/0:.:45:45:0:0%:21,24,0,0 -Example1_ref 13745 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:60,47,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13746 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 13747 . T . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 13748 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:44:44:0:0%:21,23,0,0 -Example1_ref 13749 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:44:44:0:0%:21,23,0,0 -Example1_ref 13750 . TA T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=2.9605E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:45:44:1:2.22%:22,22,0,1 -Example1_ref 13751 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:58,51,0,0 0/0:.:42:42:0:0%:20,22,0,0 -Example1_ref 13752 . A C . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=5.0472E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:104:2:1.89%:55,49,0,2 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 13753 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 13754 . G . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13755 . G . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:57,49,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 13756 . G . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 13757 . A . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:42:42:0:0%:21,21,0,0 -Example1_ref 13758 . A . PASS DP=148;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:57,48,0,0 0/0:.:43:43:0:0%:23,20,0,0 -Example1_ref 13759 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:59,47,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 13760 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:59,50,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13761 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 13762 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13763 . A . PASS DP=154;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 13764 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:105:105:0:0%:56,49,0,0 0/0:.:44:44:0:0%:22,22,0,0 -Example1_ref 13765 . T . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:103:103:0:0%:53,50,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 13766 . A . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:45:45:0:0%:22,23,0,0 -Example1_ref 13767 . A . PASS DP=151;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:44:44:0:0%:21,23,0,0 -Example1_ref 13768 . C . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13769 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:56,50,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13770 . A . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:56,51,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 13771 . T . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:58,50,0,0 0/0:.:44:44:0:0%:20,24,0,0 -Example1_ref 13772 . T . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13773 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:56,51,0,0 0/0:.:43:43:0:0%:20,23,0,0 -Example1_ref 13774 . C . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13775 . T . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:57,50,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13776 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:109:109:0:0%:57,52,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 13777 . G . PASS DP=146;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:106:106:0:0%:55,51,0,0 0/0:.:40:40:0:0%:18,22,0,0 -Example1_ref 13778 . G . PASS DP=150;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:107:107:0:0%:58,49,0,0 0/0:.:43:43:0:0%:19,24,0,0 -Example1_ref 13779 . G A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=2.8205E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:59,53,0,0 0/0:.:44:43:1:2.27%:20,23,0,1 -Example1_ref 13780 . A . PASS DP=153;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:110:110:0:0%:58,52,0,0 0/0:.:43:43:0:0%:21,22,0,0 -Example1_ref 13781 . C . PASS DP=149;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:108:108:0:0%:59,49,0,0 0/0:.:41:41:0:0%:20,21,0,0 -Example1_ref 13782 . T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:113:0:0%:61,52,0,0 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13783 . A T . PASS DP=155;SS=0;SSC=0;GPV=1E0;SPV=7.2903E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:113:112:1:0.88%:61,51,0,1 0/0:.:42:42:0:0%:19,23,0,0 -Example1_ref 13784 . G . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:111:111:0:0%:60,51,0,0 0/0:.:41:41:0:0%:18,23,0,0 -Example1_ref 13785 . C . PASS DP=152;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:112:112:0:0%:63,49,0,0 0/0:.:40:40:0:0%:19,21,0,0 -Example1_ref 13786 . A . PASS DP=156;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:115:115:0:0%:63,52,0,0 0/0:.:41:41:0:0%:19,22,0,0 -Example1_ref 13787 . C . PASS DP=168;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:124:124:0:0%:77,47,0,0 0/0:.:44:44:0:0%:23,21,0,0 -Example1_ref 13788 . T . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:43:43:0:0%:22,21,0,0 -Example1_ref 13789 . T . PASS DP=177;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:46:46:0:0%:24,22,0,0 -Example1_ref 13790 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:131:131:0:0%:78,53,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 13791 . A C . PASS DP=175;SS=0;SSC=0;GPV=1E0;SPV=2.6857E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:128:128:0:0%:75,53,0,0 0/0:.:47:46:1:2.13%:23,23,1,0 -Example1_ref 13792 . G . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:77,52,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 13793 . A . PASS DP=178;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:129:129:0:0%:78,51,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 13794 . A . PASS DP=181;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:133:133:0:0%:81,52,0,0 0/0:.:48:48:0:0%:26,22,0,0 -Example1_ref 13795 . C . PASS DP=184;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:88,49,0,0 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 13796 . T . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:137:137:0:0%:88,49,0,0 0/0:.:46:46:0:0%:25,21,0,0 -Example1_ref 13797 . A . PASS DP=182;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:87,51,0,0 0/0:.:44:44:0:0%:24,20,0,0 -Example1_ref 13798 . T . PASS DP=187;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:90,50,0,0 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 13799 . C . PASS DP=183;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:90,48,0,0 0/0:.:45:45:0:0%:23,22,0,0 -Example1_ref 13800 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:139:139:0:0%:89,50,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 13801 . A . PASS DP=185;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:138:138:0:0%:87,51,0,0 0/0:.:47:47:0:0%:24,23,0,0 -Example1_ref 13802 . G . PASS DP=186;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:140:140:0:0%:89,51,0,0 0/0:.:46:46:0:0%:23,23,0,0 -Example1_ref 13803 . T . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:89,52,0,0 0/0:.:47:47:0:0%:23,24,0,0 -Example1_ref 13804 . A . PASS DP=190;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:90,52,0,0 0/0:.:48:48:0:0%:24,24,0,0 -Example1_ref 13805 . C . PASS DP=192;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:92,51,0,0 0/0:.:49:49:0:0%:25,24,0,0 -Example1_ref 13806 . T . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:143:143:0:0%:91,52,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 13807 . T . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:145:145:0:0%:92,53,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 13808 . A . PASS DP=193;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:144:144:0:0%:91,53,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 13809 . A . PASS DP=189;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:91,50,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 13810 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:94,52,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 13811 . A . PASS DP=194;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:146:146:0:0%:95,51,0,0 0/0:.:48:48:0:0%:25,23,0,0 -Example1_ref 13812 . T . PASS DP=196;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:147:147:0:0%:94,53,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 13813 . C . PASS DP=191;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:142:142:0:0%:94,48,0,0 0/0:.:49:49:0:0%:26,23,0,0 -Example1_ref 13814 . A . PASS DP=188;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:141:141:0:0%:92,49,0,0 0/0:.:47:47:0:0%:25,22,0,0 -Example1_ref 13815 . G . PASS DP=197;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:148:148:0:0%:98,50,0,0 0/0:.:49:49:0:0%:27,22,0,0 -Example1_ref 13816 . A . PASS DP=206;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:155:0:0%:103,52,0,0 0/0:.:51:51:0:0%:28,23,0,0 -Example1_ref 13817 . T . PASS DP=199;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:150:150:0:0%:102,48,0,0 0/0:.:49:49:0:0%:28,21,0,0 -Example1_ref 13818 . C A . PASS DP=207;SS=0;SSC=0;GPV=1E0;SPV=5.5978E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:155:153:2:1.29%:105,48,2,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 13819 . T . PASS DP=208;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:156:156:0:0%:105,51,0,0 0/0:.:52:52:0:0%:29,23,0,0 -Example1_ref 13820 . A . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:108,52,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 13821 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:55:55:0:0%:33,22,0,0 -Example1_ref 13822 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:108,54,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 13823 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:109,54,0,0 0/0:.:52:52:0:0%:30,22,0,0 -Example1_ref 13824 . C . PASS DP=212;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:159:159:0:0%:110,49,0,0 0/0:.:53:53:0:0%:31,22,0,0 -Example1_ref 13825 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 13826 . A . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:109,53,0,0 0/0:.:54:54:0:0%:31,23,0,0 -Example1_ref 13827 . G GC . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=7.4074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:159:1:0.62%:105,54,1,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 13828 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:164:164:0:0%:110,54,0,0 0/0:.:56:56:0:0%:32,24,0,0 -Example1_ref 13829 . G . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:163:163:0:0%:109,54,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 13830 . A . PASS DP=215;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:160:160:0:0%:107,53,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 13831 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:161:161:0:0%:109,52,0,0 0/0:.:55:55:0:0%:32,23,0,0 -Example1_ref 13832 . T . PASS DP=216;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:162:162:0:0%:110,52,0,0 0/0:.:54:54:0:0%:32,22,0,0 -Example1_ref 13833 . C . PASS DP=218;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:166:166:0:0%:111,55,0,0 0/0:.:52:52:0:0%:31,21,0,0 -Example1_ref 13834 . T . PASS DP=220;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:165:165:0:0%:109,56,0,0 0/0:.:55:55:0:0%:31,24,0,0 -Example1_ref 13835 . G . PASS DP=232;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:120,55,0,0 0/0:.:57:57:0:0%:33,24,0,0 -Example1_ref 13836 . A . PASS DP=233;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:120,55,0,0 0/0:.:58:58:0:0%:34,24,0,0 -Example1_ref 13837 . T . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:122,56,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 13838 . A . PASS DP=238;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:178:178:0:0%:121,57,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 13839 . A . PASS DP=235;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:175:175:0:0%:118,57,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 13840 . T . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:124,57,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 13841 . A . PASS DP=239;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:180:180:0:0%:124,56,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 13842 . A . PASS DP=240;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:181:181:0:0%:123,58,0,0 0/0:.:59:59:0:0%:35,24,0,0 -Example1_ref 13843 . T . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:183:183:0:0%:127,56,0,0 0/0:.:59:59:0:0%:36,23,0,0 -Example1_ref 13844 . G . PASS DP=242;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:182:182:0:0%:125,57,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 13845 . A . PASS DP=247;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:187:0:0%:125,62,0,0 0/0:.:60:60:0:0%:36,24,0,0 -Example1_ref 13846 . T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:126,63,0,0 0/0:.:62:61:0:0%:38,23,0,0 -Example1_ref 13847 . G . PASS DP=252;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:189:189:0:0%:128,61,0,0 0/0:.:63:62:0:0%:39,23,0,0 -Example1_ref 13848 . G T . PASS DP=251;SS=0;SSC=0;GPV=1E0;SPV=4.4571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:187:186:1:0.53%:123,63,1,0 0/0:.:64:63:1:1.56%:38,25,1,0 -Example1_ref 13849 . A . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:194:194:0:0%:128,66,0,0 0/0:.:67:67:0:0%:39,28,0,0 -Example1_ref 13850 . CT C . PASS DP=261;SS=0;SSC=0;GPV=1E0;SPV=2.4904E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:130,66,0,0 0/0:.:65:64:1:1.54%:39,25,0,1 -Example1_ref 13851 . T . PASS DP=265;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:197:197:0:0%:130,67,0,0 0/0:.:68:68:0:0%:40,28,0,0 -Example1_ref 13852 . A . PASS DP=269;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:200:200:0:0%:131,69,0,0 0/0:.:69:69:0:0%:40,29,0,0 -Example1_ref 13853 . G . PASS DP=263;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:127,69,0,0 0/0:.:67:67:0:0%:39,28,0,0 -Example1_ref 13854 . A . PASS DP=267;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:196:196:0:0%:128,68,0,0 0/0:.:71:71:0:0%:41,30,0,0 -Example1_ref 13855 . T . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:142,73,0,0 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 13856 . G A . PASS DP=289;SS=0;SSC=0;GPV=1E0;SPV=7.4564E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:213:1:0.47%:140,73,0,1 0/0:.:73:73:0:0%:42,31,0,0 -Example1_ref 13857 . T TATAAGAGACAG . PASS DP=281;SS=0;SSC=0;GPV=1E0;SPV=4.6848E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:205:204:1:0.49%:137,67,0,1 0/0:.:76:75:1:1.32%:45,30,0,1 -Example1_ref 13858 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:212:0:0%:139,73,0,0 0/0:.:74:74:0:0%:44,30,0,0 -Example1_ref 13859 . A . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:141,74,0,0 0/0:.:75:75:0:0%:43,32,0,0 -Example1_ref 13860 . G T . PASS DP=287;SS=0;SSC=0;GPV=1E0;SPV=7.3171E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:209:1:0.48%:136,73,1,0 0/0:.:77:77:0:0%:45,32,0,0 -Example1_ref 13861 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:143,72,0,0 0/0:.:77:77:0:0%:45,32,0,0 -Example1_ref 13862 . A . PASS DP=295;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:142,74,0,0 0/0:.:79:79:0:0%:45,34,0,0 -Example1_ref 13863 . C . PASS DP=290;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:216:216:0:0%:142,74,0,0 0/0:.:74:74:0:0%:42,32,0,0 -Example1_ref 13864 . A . PASS DP=284;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:210:210:0:0%:141,69,0,0 0/0:.:74:74:0:0%:42,32,0,0 -Example1_ref 13865 . G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:139,70,0,0 0/0:.:76:76:0:0%:43,33,0,0 -Example1_ref 13866 . G GCT . PASS DP=278;SS=0;SSC=0;GPV=1E0;SPV=7.3381E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:204:203:1:0.49%:133,70,1,0 0/0:.:74:74:0:0%:42,32,0,0 -Example1_ref 13867 . T . PASS DP=286;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:141,68,0,0 0/0:.:77:77:0:0%:43,34,0,0 -Example1_ref 13868 . G . PASS DP=283;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:209:209:0:0%:143,66,0,0 0/0:.:74:74:0:0%:43,31,0,0 -Example1_ref 13869 . G T . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=7.4386E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:1:0.47%:141,70,1,0 0/0:.:73:73:0:0%:40,33,0,0 -Example1_ref 13870 . T C . PASS DP=291;SS=0;SSC=0;GPV=1E0;SPV=2.6117E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:215:215:0:0%:146,69,0,0 0/0:.:76:75:1:1.32%:42,33,1,0 -Example1_ref 13871 . T . PASS DP=293;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:141,73,0,0 0/0:.:79:79:0:0%:39,40,0,0 -Example1_ref 13872 . T . PASS DP=292;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:213:213:0:0%:140,73,0,0 0/0:.:79:79:0:0%:41,38,0,0 -Example1_ref 13873 . G . PASS DP=285;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:206:206:0:0%:133,73,0,0 0/0:.:79:79:0:0%:39,40,0,0 -Example1_ref 13874 . A . PASS DP=299;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:214:214:0:0%:141,73,0,0 0/0:.:85:85:0:0%:43,42,0,0 -Example1_ref 13875 . C . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:218:0:0%:144,74,0,0 0/0:.:82:82:0:0%:43,39,0,0 -Example1_ref 13876 . A . PASS DP=301;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:218:218:0:0%:142,76,0,0 0/0:.:83:83:0:0%:41,42,0,0 -Example1_ref 13877 . C . PASS DP=296;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:217:217:0:0%:145,72,0,0 0/0:.:79:79:0:0%:42,37,0,0 -Example1_ref 13878 . T . PASS DP=302;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:219:219:0:0%:144,75,0,0 0/0:.:83:83:0:0%:42,41,0,0 -Example1_ref 13879 . T . PASS DP=310;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:223:223:0:0%:150,73,0,0 0/0:.:87:87:0:0%:45,42,0,0 -Example1_ref 13880 . C . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:151,76,0,0 0/0:.:88:88:0:0%:46,42,0,0 -Example1_ref 13881 . C . PASS DP=311;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:224:0:0%:148,76,0,0 0/0:.:87:87:0:0%:47,40,0,0 -Example1_ref 13882 . T . PASS DP=317;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:228:228:0:0%:151,77,0,0 0/0:.:89:89:0:0%:47,42,0,0 -Example1_ref 13883 . C . PASS DP=318;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:230:230:0:0%:153,77,0,0 0/0:.:88:88:0:0%:45,43,0,0 -Example1_ref 13884 . A . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:151,78,0,0 0/0:.:93:93:0:0%:47,46,0,0 -Example1_ref 13885 . AG A . PASS DP=326;SS=0;SSC=0;GPV=1E0;SPV=7.2E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:233:1:0.43%:150,83,0,1 0/0:.:91:91:0:0%:43,48,0,0 -Example1_ref 13886 . G . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:149,85,0,0 0/0:.:95:95:0:0%:47,48,0,0 -Example1_ref 13887 . G . PASS DP=322;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:233:233:0:0%:147,86,0,0 0/0:.:89:89:0:0%:44,45,0,0 -Example1_ref 13888 . A G . PASS DP=314;SS=0;SSC=0;GPV=1E0;SPV=7.1338E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:224:223:1:0.45%:144,79,0,1 0/0:.:90:90:0:0%:46,44,0,0 -Example1_ref 13889 . G . PASS DP=319;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:234:0:0%:149,85,0,0 0/0:.:85:85:0:0%:42,43,0,0 -Example1_ref 13890 . G . PASS DP=315;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:226:226:0:0%:144,82,0,0 0/0:.:89:89:0:0%:46,43,0,0 -Example1_ref 13891 . G T . PASS DP=323;SS=0;SSC=0;GPV=1E0;SPV=4.8916E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:231:230:1:0.43%:148,82,1,0 0/0:.:92:91:1:1.09%:46,45,1,0 -Example1_ref 13892 . A . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:150,85,0,0 0/0:.:95:95:0:0%:50,45,0,0 -Example1_ref 13893 . A . PASS DP=331;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:151,87,0,0 0/0:.:93:93:0:0%:48,45,0,0 -Example1_ref 13894 . T . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:236:236:0:0%:150,86,0,0 0/0:.:94:94:0:0%:51,43,0,0 -Example1_ref 13895 . T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:239:0:0%:152,87,0,0 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 13896 . A C . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=2.8698E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:154,87,0,0 0/0:.:98:96:1:1.03%:51,45,1,0 -Example1_ref 13897 . C . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:152,83,0,0 0/0:.:94:94:0:0%:48,46,0,0 -Example1_ref 13898 . C . PASS DP=337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:238:0:0%:152,86,0,0 0/0:.:98:98:0:0%:51,47,0,0 -Example1_ref 13899 . T . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:153,89,0,0 0/0:.:99:99:0:0%:52,47,0,0 -Example1_ref 13900 . A G . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=7.0414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:239:237:1:0.42%:150,87,1,0 0/0:.:100:100:0:0%:51,49,0,0 -Example1_ref 13901 . T . PASS DP=335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:151,84,0,0 0/0:.:100:100:0:0%:52,48,0,0 -Example1_ref 13902 . C . PASS DP=330;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:234:233:0:0%:149,84,0,0 0/0:.:96:96:0:0%:51,45,0,0 -Example1_ref 13903 . A . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:0:0%:152,89,0,0 0/0:.:101:101:0:0%:52,49,0,0 -Example1_ref 13904 . C . PASS DP=346;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:155,87,0,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 13905 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:239:0:0%:151,88,0,0 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 13906 . T . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:152,90,0,0 0/0:.:100:100:0:0%:54,46,0,0 -Example1_ref 13907 . C . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:238:238:0:0%:151,87,0,0 0/0:.:101:101:0:0%:53,48,0,0 -Example1_ref 13908 . A . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:154,94,0,0 0/0:.:105:105:0:0%:55,50,0,0 -Example1_ref 13909 . A . PASS DP=345;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:150,94,0,0 0/0:.:101:101:0:0%:51,50,0,0 -Example1_ref 13910 . T . PASS DP=343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:242:0:0%:150,92,0,0 0/0:.:101:101:0:0%:54,47,0,0 -Example1_ref 13911 . T . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:146,95,0,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 13912 . G . PASS DP=339;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:237:0:0%:146,91,0,0 0/0:.:102:102:0:0%:53,49,0,0 -Example1_ref 13913 . A . PASS DP=329;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:148,84,0,0 0/0:.:97:97:0:0%:48,49,0,0 -Example1_ref 13914 . G . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:154,87,0,0 0/0:.:103:103:0:0%:54,49,0,0 -Example1_ref 13915 . G T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=7.0402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:152,92,1,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 13916 . T . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:153,93,0,0 0/0:.:107:107:0:0%:58,49,0,0 -Example1_ref 13917 . T . PASS DP=349;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:151,93,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 13918 . AT A . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=3.0028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:151,96,0,0 0/0:.:106:105:1:0.94%:55,50,1,0 -Example1_ref 13919 . T . PASS DP=348;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:152,91,0,0 0/0:.:105:105:0:0%:56,49,0,0 -Example1_ref 13920 . T . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:153,96,0,0 0/0:.:104:104:0:0%:53,51,0,0 -Example1_ref 13921 . T . PASS DP=354;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:155,95,0,0 0/0:.:104:104:0:0%:54,50,0,0 -Example1_ref 13922 . G A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=2.9213E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:157,95,0,0 0/0:.:104:103:1:0.96%:54,49,0,1 -Example1_ref 13923 . G T . PASS DP=352;SS=0;SSC=0;GPV=1E0;SPV=7.1307E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:152,98,1,0 0/0:.:101:101:0:0%:50,51,0,0 -Example1_ref 13924 . A T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=7.1148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:253:1:0.39%:155,98,1,0 0/0:.:103:103:0:0%:51,52,0,0 -Example1_ref 13925 . A . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:152,99,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 13926 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:158,99,0,0 0/0:.:105:105:0:0%:55,50,0,0 -Example1_ref 13927 . C A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=7.1667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:257:1:0.39%:159,98,0,1 0/0:.:102:102:0:0%:55,47,0,0 -Example1_ref 13928 . AACAGC A . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=7.0718E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:156,99,1,0 0/0:.:106:106:0:0%:56,50,0,0 -Example1_ref 13929 . A . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:156,100,0,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 13930 . C . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:158,100,0,0 0/0:.:105:105:0:0%:55,50,0,0 -Example1_ref 13931 . A AG . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=7.1191E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:157,99,0,1 0/0:.:104:104:0:0%:53,51,0,0 -Example1_ref 13932 . G A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=7.2113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:255:1:0.39%:156,99,1,0 0/0:.:99:99:0:0%:50,49,0,0 -Example1_ref 13933 . C A . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=7.1268E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:252:1:0.4%:159,93,0,1 0/0:.:102:102:0:0%:54,48,0,0 -Example1_ref 13934 . A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:156,102,0,0 0/0:.:105:105:0:0%:54,51,0,0 -Example1_ref 13935 . C . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:158,93,0,0 0/0:.:107:107:0:0%:56,51,0,0 -Example1_ref 13936 . C . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:156,97,0,0 0/0:.:104:104:0:0%:54,50,0,0 -Example1_ref 13937 . A . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:158,98,0,0 0/0:.:103:103:0:0%:53,50,0,0 -Example1_ref 13938 . G . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:157,99,0,0 0/0:.:106:106:0:0%:54,52,0,0 -Example1_ref 13939 . T . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:162,100,0,0 0/0:.:109:109:0:0%:57,52,0,0 -Example1_ref 13940 . T . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:159,99,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 13941 . G . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:158,100,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 13942 . T C . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=7.0411E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:1:0.39%:161,95,1,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 13943 . C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:159,96,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 13944 . T . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:161,101,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 13945 . GA G . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=7.0959E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:1:0.39%:158,100,1,0 0/0:.:106:106:0:0%:57,49,0,0 -Example1_ref 13946 . A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:157,102,0,0 0/0:.:107:107:0:0%:54,53,0,0 -Example1_ref 13947 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:159,102,0,0 0/0:.:108:108:0:0%:56,52,0,0 -Example1_ref 13948 . A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:256:256:0:0%:154,102,0,0 0/0:.:105:105:0:0%:53,52,0,0 -Example1_ref 13949 . G . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:157,98,0,0 0/0:.:108:108:0:0%:55,53,0,0 -Example1_ref 13950 . C A . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=7.0588E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:251:1:0.4%:159,92,0,1 0/0:.:105:105:0:0%:57,48,0,0 -Example1_ref 13951 . C A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=7.1229E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:159,95,1,0 0/0:.:103:103:0:0%:55,48,0,0 -Example1_ref 13952 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:160,97,0,0 0/0:.:107:107:0:0%:55,52,0,0 -Example1_ref 13953 . T . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:161,99,0,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 13954 . T . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:161,101,0,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 13955 . G A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=7.038E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:258:1:0.39%:157,101,0,1 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 13956 . A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:160,105,0,0 0/0:.:109:109:0:0%:57,52,0,0 -Example1_ref 13957 . GT G . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.0822E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:266:1:0.37%:160,106,1,0 0/0:.:110:110:0:0%:58,52,0,0 -Example1_ref 13958 . T TCTG . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=7.0635E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:159,107,1,0 0/0:.:111:111:0:0%:59,52,0,0 -Example1_ref 13959 . T . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:161,110,0,0 0/0:.:109:109:0:0%:56,53,0,0 -Example1_ref 13960 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:273:273:0:0%:161,112,0,0 0/0:.:111:111:0:0%:57,54,0,0 -Example1_ref 13961 . T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:164,114,0,0 0/0:.:113:113:0:0%:59,54,0,0 -Example1_ref 13962 . C . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:161,113,0,0 0/0:.:113:113:0:0%:58,55,0,0 -Example1_ref 13963 . A . PASS DP=397;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:164,117,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 13964 . C T . PASS DP=391;SS=0;SSC=0;GPV=1E0;SPV=5.0136E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:275:2:0.72%:162,113,2,0 0/0:.:114:114:0:0%:57,57,0,0 -Example1_ref 13965 . A . PASS DP=390;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:163,114,0,0 0/0:.:113:113:0:0%:57,56,0,0 -Example1_ref 13966 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:277:0:0%:163,114,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 13967 . A C . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=3.6329E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:272:3:1.09%:154,118,3,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 13968 . T . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:160,115,0,0 0/0:.:112:112:0:0%:58,54,0,0 -Example1_ref 13969 . T . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:271:271:0:0%:158,113,0,0 0/0:.:113:113:0:0%:56,57,0,0 -Example1_ref 13970 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:156,114,0,0 0/0:.:112:112:0:0%:57,55,0,0 -Example1_ref 13971 . T . PASS DP=382;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:159,113,0,0 0/0:.:110:110:0:0%:55,55,0,0 -Example1_ref 13972 . A G . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=7.2135E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:277:276:1:0.36%:160,116,0,1 0/0:.:107:107:0:0%:51,56,0,0 -Example1_ref 13973 . A . PASS DP=379;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:154,115,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 13974 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:159,115,0,0 0/0:.:112:112:0:0%:56,56,0,0 -Example1_ref 13975 . G . PASS DP=385;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:272:272:0:0%:154,118,0,0 0/0:.:113:113:0:0%:56,57,0,0 -Example1_ref 13976 . A . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:150,118,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 13977 . A . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:144,118,0,0 0/0:.:108:108:0:0%:51,57,0,0 -Example1_ref 13978 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:144,117,0,0 0/0:.:107:107:0:0%:50,57,0,0 -Example1_ref 13979 . G T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=2.9459E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:142,119,0,0 0/0:.:109:108:1:0.92%:52,56,1,0 -Example1_ref 13980 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:139,118,0,0 0/0:.:108:108:0:0%:52,56,0,0 -Example1_ref 13981 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:146,116,0,0 0/0:.:110:110:0:0%:54,56,0,0 -Example1_ref 13982 . G . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:144,113,0,0 0/0:.:113:113:0:0%:57,56,0,0 -Example1_ref 13983 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:145,113,0,0 0/0:.:112:112:0:0%:56,56,0,0 -Example1_ref 13984 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:144,117,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 13985 . A T . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=6.9333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:259:1:0.38%:138,121,0,1 0/0:.:115:115:0:0%:57,58,0,0 -Example1_ref 13986 . A . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:138,120,0,0 0/0:.:115:115:0:0%:57,58,0,0 -Example1_ref 13987 . T . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:136,121,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 13988 . A . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:136,121,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 13989 . A C . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=6.9482E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:134,120,1,0 0/0:.:113:112:0:0%:55,57,0,0 -Example1_ref 13990 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:136,119,0,0 0/0:.:114:114:0:0%:57,57,0,0 -Example1_ref 13991 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:133,119,0,0 0/0:.:116:116:0:0%:60,56,0,0 -Example1_ref 13992 . A . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:134,117,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 13993 . C . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:136,117,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 13994 . A G . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=6.7847E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:248:1:0.4%:133,115,1,0 0/0:.:118:118:0:0%:63,55,0,0 -Example1_ref 13995 . A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:133,120,0,0 0/0:.:116:116:0:0%:60,56,0,0 -Example1_ref 13996 . G GA . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=6.8681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:1:0.4%:130,119,0,1 0/0:.:114:114:0:0%:59,55,0,0 -Example1_ref 13997 . G A . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=5.3624E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:1:0.41%:127,118,1,0 0/0:.:115:114:1:0.87%:58,56,1,0 -Example1_ref 13998 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:131,121,0,0 0/0:.:115:115:0:0%:59,56,0,0 -Example1_ref 13999 . CA C . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=6.7778E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:1:0.41%:124,119,1,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 14000 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:0:0%:128,122,0,0 0/0:.:116:116:0:0%:61,55,0,0 -Example1_ref 14001 . GGCTCT G . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=6.8245E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:124,120,0,1 0/0:.:114:114:0:0%:60,54,0,0 -Example1_ref 14002 . G . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:125,117,0,0 0/0:.:108:108:0:0%:52,56,0,0 -Example1_ref 14003 . C CCTG . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=3.1564E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:0:0%:130,115,0,0 0/0:.:113:112:1:0.88%:61,51,1,0 -Example1_ref 14004 . T . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:246:0:0%:127,119,0,0 0/0:.:111:111:0:0%:57,54,0,0 -Example1_ref 14005 . C A . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=6.8156E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:243:1:0.41%:125,118,0,1 0/0:.:114:114:0:0%:61,53,0,0 -Example1_ref 14006 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:0:0%:126,119,0,0 0/0:.:116:116:0:0%:64,52,0,0 -Example1_ref 14007 . T . PASS DP=357;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:242:0:0%:127,115,0,0 0/0:.:114:114:0:0%:60,54,0,0 -Example1_ref 14008 . C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:128,120,0,0 0/0:.:116:116:0:0%:64,52,0,0 -Example1_ref 14009 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:128,124,0,0 0/0:.:122:122:0:0%:65,57,0,0 -Example1_ref 14010 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:127,124,0,0 0/0:.:119:119:0:0%:62,57,0,0 -Example1_ref 14011 . G . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:123,125,0,0 0/0:.:117:117:0:0%:60,57,0,0 -Example1_ref 14012 . G . PASS DP=368;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:126,126,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 14013 . G . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:246:0:0%:121,125,0,0 0/0:.:112:112:0:0%:54,58,0,0 -Example1_ref 14014 . A . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:245:0:0%:120,125,0,0 0/0:.:114:114:0:0%:57,57,0,0 -Example1_ref 14015 . G . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:249:0:0%:121,128,0,0 0/0:.:117:117:0:0%:59,58,0,0 -Example1_ref 14016 . A AC . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=4.6134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:242:2:0.82%:120,122,0,2 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 14017 . AG A . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=6.8579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:250:1:0.4%:121,129,1,0 0/0:.:115:115:0:0%:56,59,0,0 -Example1_ref 14018 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:247:247:0:0%:120,127,0,0 0/0:.:113:113:0:0%:55,58,0,0 -Example1_ref 14019 . G . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:118,127,0,0 0/0:.:110:110:0:0%:53,57,0,0 -Example1_ref 14020 . G . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:119,125,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 14021 . G . PASS DP=355;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:240:0:0%:115,125,0,0 0/0:.:115:115:0:0%:58,57,0,0 -Example1_ref 14022 . C . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:118,130,0,0 0/0:.:122:122:0:0%:63,59,0,0 -Example1_ref 14023 . AG A . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=3.1806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:253:253:0:0%:121,132,0,0 0/0:.:118:117:1:0.85%:60,57,1,0 -Example1_ref 14024 . G C . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=6.8365E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:254:1:0.39%:121,133,0,1 0/0:.:118:118:0:0%:60,58,0,0 -Example1_ref 14025 . G T . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=3.1549E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:112,131,0,0 0/0:.:112:111:1:0.89%:56,55,1,0 -Example1_ref 14026 . A . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:251:251:0:0%:119,132,0,0 0/0:.:116:116:0:0%:58,58,0,0 -Example1_ref 14027 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:250:250:0:0%:118,132,0,0 0/0:.:110:110:0:0%:57,53,0,0 -Example1_ref 14028 . C . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:244:0:0%:118,126,0,0 0/0:.:118:118:0:0%:63,55,0,0 -Example1_ref 14029 . T . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:249:249:0:0%:118,131,0,0 0/0:.:114:114:0:0%:58,56,0,0 -Example1_ref 14030 . A . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:119,135,0,0 0/0:.:117:117:0:0%:60,57,0,0 -Example1_ref 14031 . T . PASS DP=370;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:118,134,0,0 0/0:.:118:118:0:0%:60,58,0,0 -Example1_ref 14032 . G T . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=3.2425E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:248:0:0%:114,134,0,0 0/0:.:119:118:1:0.84%:60,58,1,0 -Example1_ref 14033 . C CCTG . PASS DP=361;SS=0;SSC=0;GPV=1E0;SPV=3.1944E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:116,129,0,0 0/0:.:116:114:1:0.87%:59,55,1,0 -Example1_ref 14034 . T C . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=6.7945E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:248:247:1:0.4%:116,131,0,1 0/0:.:118:117:0:0%:59,58,0,0 -Example1_ref 14035 . A . PASS DP=363;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:245:0:0%:117,128,0,0 0/0:.:118:118:0:0%:62,56,0,0 -Example1_ref 14036 . G . PASS DP=360;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:115,126,0,0 0/0:.:119:119:0:0%:63,56,0,0 -Example1_ref 14037 . C A . PASS DP=358;SS=0;SSC=0;GPV=1E0;SPV=4.4881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:240:238:2:0.83%:116,122,0,2 0/0:.:118:118:0:0%:63,55,0,0 -Example1_ref 14038 . A AC . PASS DP=367;SS=0;SSC=0;GPV=1E0;SPV=2.9995E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:246:243:3:1.22%:115,128,3,0 0/0:.:121:121:0:0%:62,59,0,0 -Example1_ref 14039 . T . PASS DP=362;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:0:0%:120,124,0,0 0/0:.:117:117:0:0%:62,55,0,0 -Example1_ref 14040 . G C . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=3.3242E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:243:243:0:0%:121,122,0,0 0/0:.:121:120:1:0.83%:65,55,1,0 -Example1_ref 14041 . T TC . PASS DP=366;SS=0;SSC=0;GPV=1E0;SPV=2.9508E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:241:3:1.23%:119,122,3,0 0/0:.:122:122:0:0%:67,55,0,0 -Example1_ref 14042 . T . PASS DP=364;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:244:243:0:0%:119,124,0,0 0/0:.:120:120:0:0%:66,54,0,0 -Example1_ref 14043 . A . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:241:241:0:0%:116,125,0,0 0/0:.:118:118:0:0%:64,54,0,0 -Example1_ref 14044 . T . PASS DP=351;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:232:232:0:0%:114,118,0,0 0/0:.:119:119:0:0%:65,54,0,0 -Example1_ref 14045 . G A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=3.3626E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:110,117,0,0 0/0:.:115:114:1:0.87%:62,52,0,1 -Example1_ref 14046 . A . PASS DP=342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:112,117,0,0 0/0:.:113:113:0:0%:60,53,0,0 -Example1_ref 14047 . T . PASS DP=350;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:235:235:0:0%:116,119,0,0 0/0:.:115:115:0:0%:62,53,0,0 -Example1_ref 14048 . GC G . PASS DP=353;SS=0;SSC=0;GPV=1E0;SPV=6.7139E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:237:236:1:0.42%:117,119,0,1 0/0:.:116:116:0:0%:62,54,0,0 -Example1_ref 14049 . C . PASS DP=344;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:229:0:0%:115,114,0,0 0/0:.:115:115:0:0%:65,50,0,0 -Example1_ref 14050 . C A . PASS DP=341;SS=0;SSC=0;GPV=1E0;SPV=3.3431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:227:227:0:0%:113,114,0,0 0/0:.:114:113:1:0.88%:61,52,1,0 -Example1_ref 14051 . A C . PASS DP=359;SS=0;SSC=0;GPV=1E0;SPV=6.7409E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:241:1:0.41%:121,120,0,1 0/0:.:117:117:0:0%:65,52,0,0 -Example1_ref 14052 . C A . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=3.262E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:135,117,0,0 0/0:.:122:121:1:0.82%:69,52,1,0 -Example1_ref 14053 . A G . PASS DP=380;SS=0;SSC=0;GPV=1E0;SPV=3.2105E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:138,120,0,0 0/0:.:122:121:1:0.82%:70,51,1,0 -Example1_ref 14054 . T G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=6.7617E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:1:0.38%:136,124,0,1 0/0:.:125:125:0:0%:72,53,0,0 -Example1_ref 14055 . T . PASS DP=388;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:135,126,0,0 0/0:.:127:127:0:0%:74,53,0,0 -Example1_ref 14056 . A . PASS DP=387;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:134,127,0,0 0/0:.:126:126:0:0%:74,52,0,0 -Example1_ref 14057 . G . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:135,127,0,0 0/0:.:124:124:0:0%:72,52,0,0 -Example1_ref 14058 . G T . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1.0464E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:130,122,0,0 0/0:.:121:119:2:1.65%:67,52,2,0 -Example1_ref 14059 . A . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:132,129,0,0 0/0:.:125:125:0:0%:73,52,0,0 -Example1_ref 14060 . C A . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=7.7715E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:251:3:1.18%:131,120,1,2 0/0:.:115:114:1:0.87%:71,43,0,1 -Example1_ref 14061 . C . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:255:255:0:0%:133,122,0,0 0/0:.:116:116:0:0%:72,44,0,0 -Example1_ref 14062 . T . PASS DP=378;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:261:0:0%:137,124,0,0 0/0:.:117:117:0:0%:73,44,0,0 -Example1_ref 14063 . G . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:135,125,0,0 0/0:.:116:116:0:0%:72,44,0,0 -Example1_ref 14064 . C . PASS DP=369;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:133,124,0,0 0/0:.:112:112:0:0%:69,43,0,0 -Example1_ref 14065 . A . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:260:260:0:0%:134,126,0,0 0/0:.:113:113:0:0%:68,45,0,0 -Example1_ref 14066 . G . PASS DP=375;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:259:259:0:0%:134,125,0,0 0/0:.:116:116:0:0%:73,43,0,0 -Example1_ref 14067 . T . PASS DP=373;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:258:258:0:0%:133,125,0,0 0/0:.:115:115:0:0%:73,42,0,0 -Example1_ref 14068 . T . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:130,127,0,0 0/0:.:117:117:0:0%:74,43,0,0 -Example1_ref 14069 . A . PASS DP=371;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:128,126,0,0 0/0:.:117:117:0:0%:74,43,0,0 -Example1_ref 14070 . A . PASS DP=365;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:252:252:0:0%:125,127,0,0 0/0:.:113:113:0:0%:71,42,0,0 -Example1_ref 14071 . T G . PASS DP=356;SS=0;SSC=0;GPV=1E0;SPV=6.882E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:245:244:1:0.41%:126,118,0,1 0/0:.:111:111:0:0%:70,41,0,0 -Example1_ref 14072 . T . PASS DP=372;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:254:254:0:0%:128,126,0,0 0/0:.:118:118:0:0%:72,46,0,0 -Example1_ref 14073 . A AG . PASS DP=374;SS=0;SSC=0;GPV=1E0;SPV=3.1367E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:256:0:0%:127,129,0,0 0/0:.:117:116:1:0.85%:71,45,0,1 -Example1_ref 14074 . T . PASS DP=383;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:131,131,0,0 0/0:.:121:121:0:0%:76,45,0,0 -Example1_ref 14075 . T . PASS DP=376;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:257:257:0:0%:132,125,0,0 0/0:.:119:119:0:0%:74,45,0,0 -Example1_ref 14076 . A . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:131,131,0,0 0/0:.:122:122:0:0%:76,46,0,0 -Example1_ref 14077 . T . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:135,130,0,0 0/0:.:124:124:0:0%:77,47,0,0 -Example1_ref 14078 . A . PASS DP=395;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:134,135,0,0 0/0:.:126:126:0:0%:77,49,0,0 -Example1_ref 14079 . A . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:268:268:0:0%:133,135,0,0 0/0:.:125:125:0:0%:76,49,0,0 -Example1_ref 14080 . T . PASS DP=386;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:262:262:0:0%:135,127,0,0 0/0:.:124:124:0:0%:80,44,0,0 -Example1_ref 14081 . T . PASS DP=389;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:265:265:0:0%:133,132,0,0 0/0:.:124:124:0:0%:78,46,0,0 -Example1_ref 14082 . C . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:267:0:0%:134,133,0,0 0/0:.:127:127:0:0%:78,49,0,0 -Example1_ref 14083 . A G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=6.7766E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:267:266:1:0.37%:134,132,0,1 0/0:.:127:127:0:0%:77,50,0,0 -Example1_ref 14084 . G . PASS DP=393;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:270:270:0:0%:138,132,0,0 0/0:.:123:123:0:0%:75,48,0,0 -Example1_ref 14085 . G . PASS DP=394;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:269:269:0:0%:136,133,0,0 0/0:.:125:125:0:0%:76,49,0,0 -Example1_ref 14086 . T . PASS DP=404;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:138,136,0,0 0/0:.:130:130:0:0%:79,51,0,0 -Example1_ref 14087 . T . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:274:274:0:0%:138,136,0,0 0/0:.:131:131:0:0%:77,54,0,0 -Example1_ref 14088 . T . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:275:275:0:0%:138,137,0,0 0/0:.:132:132:0:0%:79,53,0,0 -Example1_ref 14089 . G . PASS DP=415;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:145,137,0,0 0/0:.:133:133:0:0%:80,53,0,0 -Example1_ref 14090 . A . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:144,141,0,0 0/0:.:134:134:0:0%:79,55,0,0 -Example1_ref 14091 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:149,141,0,0 0/0:.:135:135:0:0%:79,56,0,0 -Example1_ref 14092 . T C . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=5.4039E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:292:290:1:0.34%:149,141,1,0 0/0:.:138:137:1:0.72%:82,55,0,1 -Example1_ref 14093 . A T . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=6.8322E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:1:0.35%:149,139,0,1 0/0:.:134:134:0:0%:78,56,0,0 -Example1_ref 14094 . T C . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=3.1894E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:0:0%:145,139,0,0 0/0:.:133:132:1:0.75%:76,56,1,0 -Example1_ref 14095 . A AAGAGAC . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=4.6436E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:283:2:0.7%:143,140,0,2 0/0:.:133:133:0:0%:78,55,0,0 -Example1_ref 14096 . A AC . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=5.2745E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:1:0.35%:143,138,0,1 0/0:.:128:127:1:0.78%:72,55,1,0 -Example1_ref 14097 . CG C . PASS DP=410;SS=0;SSC=0;GPV=1E0;SPV=6.846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:279:1:0.36%:142,137,1,0 0/0:.:129:129:0:0%:74,55,0,0 -Example1_ref 14098 . G . PASS DP=405;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:143,136,0,0 0/0:.:126:126:0:0%:71,55,0,0 -Example1_ref 14099 . G . PASS DP=411;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:281:0:0%:142,139,0,0 0/0:.:129:129:0:0%:75,54,0,0 -Example1_ref 14100 . A . PASS DP=407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:278:278:0:0%:137,141,0,0 0/0:.:129:129:0:0%:74,55,0,0 -Example1_ref 14101 . T . PASS DP=419;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:283:0:0%:141,142,0,0 0/0:.:136:136:0:0%:78,58,0,0 -Example1_ref 14102 . G . PASS DP=420;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:144,141,0,0 0/0:.:135:135:0:0%:76,59,0,0 -Example1_ref 14103 . T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:148,141,0,0 0/0:.:140:140:0:0%:80,60,0,0 -Example1_ref 14104 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:147,140,0,0 0/0:.:134:134:0:0%:75,59,0,0 -Example1_ref 14105 . A . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:285:0:0%:144,141,0,0 0/0:.:136:136:0:0%:77,59,0,0 -Example1_ref 14106 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:145,137,0,0 0/0:.:136:136:0:0%:78,58,0,0 -Example1_ref 14107 . T . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:280:0:0%:145,135,0,0 0/0:.:138:138:0:0%:79,59,0,0 -Example1_ref 14108 . G A . PASS DP=412;SS=0;SSC=0;GPV=1E0;SPV=5.3641E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:280:279:1:0.36%:140,139,0,1 0/0:.:132:130:1:0.76%:70,60,1,0 -Example1_ref 14109 . G T . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=4.6746E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:286:2:0.69%:140,146,2,0 0/0:.:133:133:0:0%:71,62,0,0 -Example1_ref 14110 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:147,140,0,0 0/0:.:143:143:0:0%:80,63,0,0 -Example1_ref 14111 . C A . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=4.4603E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:283:280:2:0.71%:142,138,0,2 0/0:.:140:140:0:0%:78,62,0,0 -Example1_ref 14112 . A . PASS DP=425;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:279:279:0:0%:140,139,0,0 0/0:.:146:146:0:0%:77,69,0,0 -Example1_ref 14113 . AC A . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=3.3796E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:141,145,0,0 0/0:.:146:145:1:0.68%:76,69,1,0 -Example1_ref 14114 . C . PASS DP=431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:141,143,0,0 0/0:.:147:146:0:0%:78,68,0,0 -Example1_ref 14115 . G T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=3.4018E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:289:0:0%:139,150,0,0 0/0:.:149:148:1:0.67%:78,70,1,0 -Example1_ref 14116 . A . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:290:290:0:0%:136,154,0,0 0/0:.:144:144:0:0%:73,71,0,0 -Example1_ref 14117 . G . PASS DP=433;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:284:0:0%:136,148,0,0 0/0:.:149:149:0:0%:77,72,0,0 -Example1_ref 14118 . A . PASS DP=442;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:137,157,0,0 0/0:.:148:148:0:0%:74,74,0,0 -Example1_ref 14119 . A C . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=3.3708E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:295:0:0%:137,158,0,0 0/0:.:150:149:1:0.67%:75,74,0,1 -Example1_ref 14120 . T A . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=3.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:142,160,0,0 0/0:.:151:150:1:0.66%:77,73,0,1 -Example1_ref 14121 . T G . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=3.3991E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:140,161,0,0 0/0:.:155:154:1:0.65%:76,78,0,1 -Example1_ref 14122 . G A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=3.3781E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:135,161,0,0 0/0:.:152:150:1:0.66%:72,78,1,0 -Example1_ref 14123 . A . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:141,166,0,0 0/0:.:156:156:0:0%:75,81,0,0 -Example1_ref 14124 . A . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:139,165,0,0 0/0:.:156:155:0:0%:75,80,0,0 -Example1_ref 14125 . A . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:137,165,0,0 0/0:.:156:156:0:0%:75,81,0,0 -Example1_ref 14126 . A T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=3.4341E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:139,165,0,0 0/0:.:159:158:1:0.63%:77,81,1,0 -Example1_ref 14127 . T . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:141,164,0,0 0/0:.:160:160:0:0%:80,80,0,0 -Example1_ref 14128 . A . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:140,164,0,0 0/0:.:158:158:0:0%:78,80,0,0 -Example1_ref 14129 . T G . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=6.5652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:1:0.33%:139,162,0,1 0/0:.:158:158:0:0%:79,79,0,0 -Example1_ref 14130 . T . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:141,160,0,0 0/0:.:158:158:0:0%:79,79,0,0 -Example1_ref 14131 . T . PASS DP=456;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:138,160,0,0 0/0:.:158:158:0:0%:79,79,0,0 -Example1_ref 14132 . C A . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=6.6075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:297:1:0.34%:139,158,0,1 0/0:.:153:153:0:0%:78,75,0,0 -Example1_ref 14133 . C . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:138,163,0,0 0/0:.:158:158:0:0%:80,78,0,0 -Example1_ref 14134 . T . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:142,164,0,0 0/0:.:161:161:0:0%:82,79,0,0 -Example1_ref 14135 . T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:142,167,0,0 0/0:.:157:157:0:0%:79,78,0,0 -Example1_ref 14136 . C T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=6.6102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:142,169,1,0 0/0:.:160:160:0:0%:81,79,0,0 -Example1_ref 14137 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:140,169,0,0 0/0:.:157:157:0:0%:78,79,0,0 -Example1_ref 14138 . G . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:140,166,0,0 0/0:.:155:155:0:0%:76,79,0,0 -Example1_ref 14139 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:133,169,0,0 0/0:.:155:155:0:0%:72,83,0,0 -Example1_ref 14140 . G T . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=3.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:143,167,0,0 0/0:.:155:154:1:0.65%:77,77,0,1 -Example1_ref 14141 . G T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=6.6314E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:140,172,1,0 0/0:.:159:159:0:0%:78,81,0,0 -Example1_ref 14142 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:147,172,0,0 0/0:.:161:161:0:0%:82,79,0,0 -Example1_ref 14143 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:318:318:0:0%:145,173,0,0 0/0:.:162:162:0:0%:82,80,0,0 -Example1_ref 14144 . T . PASS DP=474;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:319:0:0%:148,171,0,0 0/0:.:155:155:0:0%:79,76,0,0 -Example1_ref 14145 . C A . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=6.6173E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:312:1:0.32%:144,168,0,1 0/0:.:160:160:0:0%:80,80,0,0 -Example1_ref 14146 . A . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:144,170,0,0 0/0:.:159:159:0:0%:79,80,0,0 -Example1_ref 14147 . T . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:312:0:0%:143,169,0,0 0/0:.:163:163:0:0%:82,81,0,0 -Example1_ref 14148 . T G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=6.6597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:316:1:0.32%:144,172,1,0 0/0:.:159:159:0:0%:79,80,0,0 -Example1_ref 14149 . A . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:142,166,0,0 0/0:.:157:157:0:0%:79,78,0,0 -Example1_ref 14150 . G . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:140,162,0,0 0/0:.:152:152:0:0%:77,75,0,0 -Example1_ref 14151 . T . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:141,162,0,0 0/0:.:155:155:0:0%:80,75,0,0 -Example1_ref 14152 . A . PASS DP=448;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:142,158,0,0 0/0:.:148:148:0:0%:76,72,0,0 -Example1_ref 14153 . G . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:142,152,0,0 0/0:.:146:146:0:0%:78,68,0,0 -Example1_ref 14154 . G . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:301:0:0%:144,157,0,0 0/0:.:149:149:0:0%:77,72,0,0 -Example1_ref 14155 . T TA . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=6.6143E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:141,153,1,0 0/0:.:151:151:0:0%:80,71,0,0 -Example1_ref 14156 . A . PASS DP=449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:296:0:0%:140,156,0,0 0/0:.:153:153:0:0%:80,73,0,0 -Example1_ref 14157 . A . PASS DP=450;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:294:0:0%:138,156,0,0 0/0:.:156:156:0:0%:83,73,0,0 -Example1_ref 14158 . A G . PASS DP=453;SS=0;SSC=0;GPV=1E0;SPV=6.7108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:303:1:0.33%:144,159,0,1 0/0:.:149:149:0:0%:77,72,0,0 -Example1_ref 14159 . A . PASS DP=457;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:141,162,0,0 0/0:.:154:154:0:0%:80,74,0,0 -Example1_ref 14160 . A T . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=6.5727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:1:0.33%:141,161,1,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 14161 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:145,163,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 14162 . C . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:147,162,0,0 0/0:.:154:154:0:0%:84,70,0,0 -Example1_ref 14163 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:145,158,0,0 0/0:.:157:157:0:0%:82,75,0,0 -Example1_ref 14164 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:146,165,0,0 0/0:.:157:157:0:0%:83,74,0,0 -Example1_ref 14165 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:142,164,0,0 0/0:.:152:152:0:0%:80,72,0,0 -Example1_ref 14166 . G . PASS DP=459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:306:0:0%:144,162,0,0 0/0:.:153:153:0:0%:79,74,0,0 -Example1_ref 14167 . A T . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=6.6953E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:144,167,1,0 0/0:.:154:154:0:0%:79,75,0,0 -Example1_ref 14168 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:144,167,0,0 0/0:.:155:155:0:0%:81,74,0,0 -Example1_ref 14169 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:146,168,0,0 0/0:.:154:154:0:0%:76,78,0,0 -Example1_ref 14170 . T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:314:0:0%:146,168,0,0 0/0:.:157:157:0:0%:81,76,0,0 -Example1_ref 14171 . G . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:0:0%:146,172,0,0 0/0:.:157:157:0:0%:80,77,0,0 -Example1_ref 14172 . T . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:322:0:0%:147,175,0,0 0/0:.:156:156:0:0%:80,76,0,0 -Example1_ref 14173 . G A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=5.5787E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:319:1:0.31%:141,178,0,1 0/0:.:161:160:1:0.62%:77,83,0,1 -Example1_ref 14174 . A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:144,184,0,0 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 14175 . C G . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=2.4788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:145,182,0,1 0/0:.:159:156:2:1.27%:75,81,0,2 -Example1_ref 14176 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:144,185,0,0 0/0:.:161:161:0:0%:77,84,0,0 -Example1_ref 14177 . C . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:141,184,0,0 0/0:.:160:160:0:0%:76,84,0,0 -Example1_ref 14178 . A AG . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=2.6244E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:1:0.31%:142,183,0,1 0/0:.:165:163:2:1.21%:77,86,0,2 -Example1_ref 14179 . GA G . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=6.5992E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:1:0.31%:143,182,0,1 0/0:.:168:168:0:0%:83,85,0,0 -Example1_ref 14180 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:333:0:0%:144,189,0,0 0/0:.:170:170:0:0%:83,87,0,0 -Example1_ref 14181 . T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:150,190,0,0 0/0:.:165:165:0:0%:82,83,0,0 -Example1_ref 14182 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:149,186,0,0 0/0:.:169:169:0:0%:84,85,0,0 -Example1_ref 14183 . C . PASS DP=489;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:148,177,0,0 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 14184 . T . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:151,187,0,0 0/0:.:171:171:0:0%:82,89,0,0 -Example1_ref 14185 . T . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:150,191,0,0 0/0:.:170:170:0:0%:81,89,0,0 -Example1_ref 14186 . A . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:151,197,0,0 0/0:.:173:173:0:0%:81,92,0,0 -Example1_ref 14187 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:0:0%:151,198,0,0 0/0:.:172:172:0:0%:80,92,0,0 -Example1_ref 14188 . C . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:345:0:0%:149,196,0,0 0/0:.:167:167:0:0%:78,89,0,0 -Example1_ref 14189 . A AG . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1.0889E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:147,187,0,0 0/0:.:165:163:2:1.21%:79,84,0,2 -Example1_ref 14190 . G . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:153,186,0,0 0/0:.:163:163:0:0%:81,82,0,0 -Example1_ref 14191 . G T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=3.3267E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:154,183,0,0 0/0:.:168:167:1:0.6%:82,85,1,0 -Example1_ref 14192 . G T . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=5.5512E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:153,187,1,0 0/0:.:170:169:1:0.59%:84,85,1,0 -Example1_ref 14193 . T . PASS DP=527;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:162,188,0,0 0/0:.:177:177:0:0%:86,91,0,0 -Example1_ref 14194 . A . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:163,191,0,0 0/0:.:178:178:0:0%:85,93,0,0 -Example1_ref 14195 . A T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=3.384E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:156,192,0,0 0/0:.:178:177:1:0.56%:83,94,1,0 -Example1_ref 14196 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:155,192,0,0 0/0:.:175:175:0:0%:81,94,0,0 -Example1_ref 14197 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:153,194,0,0 0/0:.:172:172:0:0%:80,92,0,0 -Example1_ref 14198 . G T . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=6.6603E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:1:0.29%:154,192,1,0 0/0:.:174:174:0:0%:80,94,0,0 -Example1_ref 14199 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:155,184,0,0 0/0:.:177:177:0:0%:83,94,0,0 -Example1_ref 14200 . A . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:156,186,0,0 0/0:.:176:176:0:0%:82,94,0,0 -Example1_ref 14201 . C A . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=6.5422E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:1:0.3%:151,181,0,1 0/0:.:176:176:0:0%:83,93,0,0 -Example1_ref 14202 . T C . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=3.4774E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:151,181,0,0 0/0:.:177:176:1:0.56%:83,93,0,1 -Example1_ref 14203 . G T . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=3.3911E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:162,181,0,0 0/0:.:176:175:1:0.57%:84,91,1,0 -Example1_ref 14204 . T . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:165,174,0,0 0/0:.:178:178:0:0%:85,93,0,0 -Example1_ref 14205 . T . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:161,176,0,0 0/0:.:170:170:0:0%:83,87,0,0 -Example1_ref 14206 . C . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:160,173,0,0 0/0:.:170:170:0:0%:81,89,0,0 -Example1_ref 14207 . A . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:162,177,0,0 0/0:.:178:178:0:0%:86,92,0,0 -Example1_ref 14208 . A . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:161,179,0,0 0/0:.:176:176:0:0%:85,91,0,0 -Example1_ref 14209 . TG T . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=3.3531E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:158,179,0,0 0/0:.:170:169:1:0.59%:79,90,1,0 -Example1_ref 14210 . G . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:162,176,0,0 0/0:.:168:168:0:0%:79,89,0,0 -Example1_ref 14211 . G A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=6.5927E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:157,169,0,1 0/0:.:169:169:0:0%:80,89,0,0 -Example1_ref 14212 . G . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:161,175,0,0 0/0:.:167:167:0:0%:78,89,0,0 -Example1_ref 14213 . A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:159,173,0,0 0/0:.:171:171:0:0%:82,89,0,0 -Example1_ref 14214 . A G . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=6.6E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:1:0.3%:156,173,0,1 0/0:.:170:170:0:0%:82,88,0,0 -Example1_ref 14215 . T A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=6.6463E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:159,167,0,1 0/0:.:165:165:0:0%:80,85,0,0 -Example1_ref 14216 . C A . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=6.6395E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:325:1:0.31%:160,165,0,1 0/0:.:165:165:0:0%:80,85,0,0 -Example1_ref 14217 . C . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:157,175,0,0 0/0:.:167:167:0:0%:78,89,0,0 -Example1_ref 14218 . A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:158,175,0,0 0/0:.:170:170:0:0%:80,90,0,0 -Example1_ref 14219 . A . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:159,175,0,0 0/0:.:171:171:0:0%:81,90,0,0 -Example1_ref 14220 . A C . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=6.6197E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:328:1:0.3%:153,175,1,0 0/0:.:168:168:0:0%:77,91,0,0 -Example1_ref 14221 . T C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=6.6802E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:329:1:0.3%:157,172,1,0 0/0:.:164:164:0:0%:78,86,0,0 -Example1_ref 14222 . T . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:158,171,0,0 0/0:.:164:164:0:0%:76,88,0,0 -Example1_ref 14223 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:323:323:0:0%:152,171,0,0 0/0:.:165:164:0:0%:76,88,0,0 -Example1_ref 14224 . A . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:157,176,0,0 0/0:.:163:163:0:0%:76,87,0,0 -Example1_ref 14225 . A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:155,176,0,0 0/0:.:166:166:0:0%:77,89,0,0 -Example1_ref 14226 . C A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=5.4301E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:325:1:0.31%:151,174,0,1 0/0:.:156:155:1:0.64%:72,83,0,1 -Example1_ref 14227 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:154,175,0,0 0/0:.:159:159:0:0%:71,88,0,0 -Example1_ref 14228 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:150,175,0,0 0/0:.:161:161:0:0%:73,88,0,0 -Example1_ref 14229 . G . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:320:0:0%:148,172,0,0 0/0:.:159:159:0:0%:71,88,0,0 -Example1_ref 14230 . G T . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=7.0465E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:312:2:0.64%:141,171,2,0 0/0:.:157:156:1:0.64%:69,87,1,0 -Example1_ref 14231 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:144,173,0,0 0/0:.:158:158:0:0%:71,87,0,0 -Example1_ref 14232 . T . PASS DP=467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:144,171,0,0 0/0:.:152:152:0:0%:67,85,0,0 -Example1_ref 14233 . A . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:322:322:0:0%:148,174,0,0 0/0:.:159:159:0:0%:71,88,0,0 -Example1_ref 14234 . G GCTGTCT . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=6.7437E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:147,173,1,0 0/0:.:155:155:0:0%:70,85,0,0 -Example1_ref 14235 . GA G . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=6.7442E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:319:318:1:0.31%:147,171,1,0 0/0:.:154:154:0:0%:68,86,0,0 -Example1_ref 14236 . A ACTGTC . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=6.6808E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:315:1:0.32%:142,173,1,0 0/0:.:157:157:0:0%:70,87,0,0 -Example1_ref 14237 . A . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:142,173,0,0 0/0:.:156:156:0:0%:68,88,0,0 -Example1_ref 14238 . A . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:314:314:0:0%:141,173,0,0 0/0:.:151:151:0:0%:65,86,0,0 -Example1_ref 14239 . T . PASS DP=463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:309:0:0%:142,167,0,0 0/0:.:154:154:0:0%:70,84,0,0 -Example1_ref 14240 . A . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:315:315:0:0%:140,175,0,0 0/0:.:151:151:0:0%:66,85,0,0 -Example1_ref 14241 . T . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:303:0:0%:129,174,0,0 0/0:.:152:152:0:0%:67,85,0,0 -Example1_ref 14242 . G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:124,174,0,0 0/0:.:148:148:0:0%:62,86,0,0 -Example1_ref 14243 . G . PASS DP=439;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:293:293:0:0%:119,174,0,0 0/0:.:146:146:0:0%:61,85,0,0 -Example1_ref 14244 . A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:121,165,0,0 0/0:.:140:140:0:0%:61,79,0,0 -Example1_ref 14245 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:123,163,0,0 0/0:.:143:143:0:0%:61,82,0,0 -Example1_ref 14246 . T . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:288:0:0%:124,164,0,0 0/0:.:144:144:0:0%:62,82,0,0 -Example1_ref 14247 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:287:287:0:0%:125,162,0,0 0/0:.:145:145:0:0%:63,82,0,0 -Example1_ref 14248 . T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:286:0:0%:125,161,0,0 0/0:.:144:144:0:0%:62,82,0,0 -Example1_ref 14249 . G A . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=2.4509E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:285:284:1:0.35%:122,162,0,1 0/0:.:137:134:2:1.47%:53,81,2,0 -Example1_ref 14250 . A . PASS DP=424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:122,160,0,0 0/0:.:142:142:0:0%:62,80,0,0 -Example1_ref 14251 . G . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:281:281:0:0%:120,161,0,0 0/0:.:137:137:0:0%:59,78,0,0 -Example1_ref 14252 . A . PASS DP=416;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:121,161,0,0 0/0:.:134:134:0:0%:60,74,0,0 -Example1_ref 14253 . G . PASS DP=423;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:282:282:0:0%:126,156,0,0 0/0:.:141:141:0:0%:64,77,0,0 -Example1_ref 14254 . CT C . PASS DP=427;SS=0;SSC=0;GPV=1E0;SPV=6.6901E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:286:284:1:0.35%:127,157,1,0 0/0:.:141:141:0:0%:61,80,0,0 -Example1_ref 14255 . T . PASS DP=422;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:284:283:0:0%:126,157,0,0 0/0:.:138:138:0:0%:61,77,0,0 -Example1_ref 14256 . T . PASS DP=421;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:288:287:0:0%:125,162,0,0 0/0:.:133:133:0:0%:57,76,0,0 -Example1_ref 14257 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:289:288:0:0%:129,159,0,0 0/0:.:141:141:0:0%:62,79,0,0 -Example1_ref 14258 . A T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=6.7431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:294:293:1:0.34%:130,163,0,1 0/0:.:142:142:0:0%:63,79,0,0 -Example1_ref 14259 . TA T . PASS DP=435;SS=0;SSC=0;GPV=1E0;SPV=6.8046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:295:1:0.34%:129,166,0,1 0/0:.:139:139:0:0%:59,80,0,0 -Example1_ref 14260 . A ATCTG . PASS DP=441;SS=0;SSC=0;GPV=1E0;SPV=3.1818E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:129,171,0,0 0/0:.:140:139:1:0.71%:59,80,1,0 -Example1_ref 14261 . T . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:125,173,0,0 0/0:.:138:138:0:0%:58,80,0,0 -Example1_ref 14262 . G T . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=4.7557E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:296:294:2:0.68%:128,166,0,2 0/0:.:133:133:0:0%:59,74,0,0 -Example1_ref 14263 . G T . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=3.0233E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:128,172,0,0 0/0:.:130:129:1:0.77%:57,72,1,0 -Example1_ref 14264 . A G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=4.7879E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:297:295:2:0.67%:124,171,2,0 0/0:.:133:132:0:0%:58,74,0,0 -Example1_ref 14265 . G . PASS DP=432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:300:300:0:0%:125,175,0,0 0/0:.:132:132:0:0%:59,73,0,0 -Example1_ref 14266 . T A . PASS DP=426;SS=0;SSC=0;GPV=1E0;SPV=6.9412E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:295:294:1:0.34%:124,170,0,1 0/0:.:131:130:0:0%:57,73,0,0 -Example1_ref 14267 . G . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:299:0:0%:133,166,0,0 0/0:.:135:135:0:0%:61,74,0,0 -Example1_ref 14268 . A ACAG . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=6.9545E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:305:1:0.33%:133,172,0,1 0/0:.:134:134:0:0%:59,75,0,0 -Example1_ref 14269 . A G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=3.0474E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:308:0:0%:132,176,0,0 0/0:.:135:134:1:0.74%:60,74,0,1 -Example1_ref 14270 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:130,175,0,0 0/0:.:133:133:0:0%:58,75,0,0 -Example1_ref 14271 . T . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:130,178,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 14272 . A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:131,177,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 14273 . AATG A . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=3.0631E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:308:308:0:0%:131,177,0,0 0/0:.:136:135:1:0.74%:59,76,1,0 -Example1_ref 14274 . A ATC . PASS DP=440;SS=0;SSC=0;GPV=1E0;SPV=3.0909E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:127,177,0,0 0/0:.:136:135:1:0.74%:59,76,1,0 -Example1_ref 14275 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:301:0:0%:128,173,0,0 0/0:.:136:136:0:0%:60,76,0,0 -Example1_ref 14276 . G . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:298:298:0:0%:127,171,0,0 0/0:.:132:132:0:0%:61,71,0,0 -Example1_ref 14277 . A . PASS DP=436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:127,180,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 14278 . T . PASS DP=434;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:305:305:0:0%:125,180,0,0 0/0:.:129:129:0:0%:58,71,0,0 -Example1_ref 14279 . A . PASS DP=429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:299:299:0:0%:121,178,0,0 0/0:.:130:130:0:0%:58,72,0,0 -Example1_ref 14280 . A . PASS DP=430;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:301:300:0:0%:122,178,0,0 0/0:.:129:129:0:0%:59,70,0,0 -Example1_ref 14281 . GTC G . PASS DP=444;SS=0;SSC=0;GPV=1E0;SPV=3.1532E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:304:304:0:0%:127,177,0,0 0/0:.:140:139:1:0.71%:66,73,0,1 -Example1_ref 14282 . T . PASS DP=438;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:302:302:0:0%:125,177,0,0 0/0:.:136:136:0:0%:66,70,0,0 -Example1_ref 14283 . C . PASS DP=445;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:310:310:0:0%:128,182,0,0 0/0:.:135:135:0:0%:68,67,0,0 -Example1_ref 14284 . T G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=3.0269E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:127,184,0,0 0/0:.:135:134:1:0.74%:66,68,0,1 -Example1_ref 14285 . A . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:123,184,0,0 0/0:.:139:139:0:0%:67,72,0,0 -Example1_ref 14286 . T G . PASS DP=446;SS=0;SSC=0;GPV=1E0;SPV=6.9213E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:309:307:1:0.32%:125,182,1,0 0/0:.:137:137:0:0%:67,70,0,0 -Example1_ref 14287 . C . PASS DP=443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:307:307:0:0%:126,181,0,0 0/0:.:136:136:0:0%:65,71,0,0 -Example1_ref 14288 . G . PASS DP=447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:311:311:0:0%:126,185,0,0 0/0:.:136:136:0:0%:66,70,0,0 -Example1_ref 14289 . G . PASS DP=458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:132,185,0,0 0/0:.:141:141:0:0%:69,72,0,0 -Example1_ref 14290 . A T . PASS DP=452;SS=0;SSC=0;GPV=1E0;SPV=6.9027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:1:0.32%:128,183,1,0 0/0:.:140:140:0:0%:71,69,0,0 -Example1_ref 14291 . T . PASS DP=451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:130,186,0,0 0/0:.:135:135:0:0%:68,67,0,0 -Example1_ref 14292 . T . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:317:317:0:0%:129,188,0,0 0/0:.:137:137:0:0%:68,69,0,0 -Example1_ref 14293 . A . PASS DP=454;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:313:313:0:0%:132,181,0,0 0/0:.:141:141:0:0%:73,68,0,0 -Example1_ref 14294 . G . PASS DP=462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:0:0%:138,182,0,0 0/0:.:141:141:0:0%:74,67,0,0 -Example1_ref 14295 . T . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:139,186,0,0 0/0:.:143:142:0:0%:74,68,0,0 -Example1_ref 14296 . A . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:137,188,0,0 0/0:.:144:144:0:0%:75,69,0,0 -Example1_ref 14297 . C A . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=7.0085E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:327:1:0.3%:139,188,0,1 0/0:.:140:140:0:0%:71,69,0,0 -Example1_ref 14298 . A . PASS DP=461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:320:319:0:0%:137,182,0,0 0/0:.:141:141:0:0%:75,66,0,0 -Example1_ref 14299 . T . PASS DP=465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:144,183,0,0 0/0:.:138:138:0:0%:74,64,0,0 -Example1_ref 14300 . T . PASS DP=460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:325:325:0:0%:142,183,0,0 0/0:.:135:135:0:0%:70,65,0,0 -Example1_ref 14301 . G . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:153,183,0,0 0/0:.:142:142:0:0%:76,66,0,0 -Example1_ref 14302 . T A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=2.9289E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:156,182,0,0 0/0:.:140:139:1:0.71%:79,60,0,1 -Example1_ref 14303 . G . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:163,191,0,0 0/0:.:148:148:0:0%:81,67,0,0 -Example1_ref 14304 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:161,192,0,0 0/0:.:147:147:0:0%:81,66,0,0 -Example1_ref 14305 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:160,194,0,0 0/0:.:148:148:0:0%:81,67,0,0 -Example1_ref 14306 . A . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:159,194,0,0 0/0:.:146:146:0:0%:79,67,0,0 -Example1_ref 14307 . T TG . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=7.0624E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:157,193,1,0 0/0:.:146:146:0:0%:81,65,0,0 -Example1_ref 14308 . G . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:161,188,0,0 0/0:.:144:144:0:0%:80,64,0,0 -Example1_ref 14309 . G GCTGTC . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=7.0968E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:160,191,1,0 0/0:.:144:144:0:0%:77,67,0,0 -Example1_ref 14310 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:156,187,0,0 0/0:.:143:143:0:0%:80,63,0,0 -Example1_ref 14311 . G A . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=7.0455E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:158,182,0,1 0/0:.:143:143:0:0%:80,63,0,0 -Example1_ref 14312 . G T . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=7.1064E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:333:1:0.3%:154,179,1,0 0/0:.:136:136:0:0%:77,59,0,0 -Example1_ref 14313 . G T . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=4.9933E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:154,177,0,1 0/0:.:137:136:1:0.73%:76,60,0,1 -Example1_ref 14314 . A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:158,184,0,0 0/0:.:137:137:0:0%:75,62,0,0 -Example1_ref 14315 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:165,180,0,0 0/0:.:135:135:0:0%:75,60,0,0 -Example1_ref 14316 . C A . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=2.8785E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:161,173,0,0 0/0:.:135:134:1:0.74%:76,58,0,1 -Example1_ref 14317 . T . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:158,185,0,0 0/0:.:136:136:0:0%:75,61,0,0 -Example1_ref 14318 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:160,184,0,0 0/0:.:142:142:0:0%:81,61,0,0 -Example1_ref 14319 . T A . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=7.1279E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:157,182,0,1 0/0:.:137:137:0:0%:78,59,0,0 -Example1_ref 14320 . C . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:159,183,0,0 0/0:.:140:140:0:0%:79,61,0,0 -Example1_ref 14321 . G A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=5.008E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:335:2:0.59%:160,175,1,1 0/0:.:139:139:0:0%:77,62,0,0 -Example1_ref 14322 . G T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=4.9772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:345:1:0.29%:158,187,1,0 0/0:.:142:141:1:0.7%:76,65,1,0 -Example1_ref 14323 . T . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:160,187,0,0 0/0:.:141:141:0:0%:79,62,0,0 -Example1_ref 14324 . A G . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=7.044E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:1:0.3%:154,181,1,0 0/0:.:141:141:0:0%:77,64,0,0 -Example1_ref 14325 . A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:155,179,0,0 0/0:.:141:141:0:0%:78,63,0,0 -Example1_ref 14326 . A . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:161,182,0,0 0/0:.:139:139:0:0%:76,63,0,0 -Example1_ref 14327 . T . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:159,180,0,0 0/0:.:138:138:0:0%:78,60,0,0 -Example1_ref 14328 . C . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:155,178,0,0 0/0:.:140:140:0:0%:78,62,0,0 -Example1_ref 14329 . A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:159,179,0,0 0/0:.:142:142:0:0%:79,63,0,0 -Example1_ref 14330 . G A . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=7.0316E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:333:1:0.3%:154,179,1,0 0/0:.:141:141:0:0%:77,64,0,0 -Example1_ref 14331 . A . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:155,181,0,0 0/0:.:142:142:0:0%:77,65,0,0 -Example1_ref 14332 . A . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:154,176,0,0 0/0:.:141:141:0:0%:76,65,0,0 -Example1_ref 14333 . G . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:153,178,0,0 0/0:.:137:137:0:0%:74,63,0,0 -Example1_ref 14334 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:152,177,0,0 0/0:.:139:139:0:0%:72,67,0,0 -Example1_ref 14335 . A . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:330:330:0:0%:151,179,0,0 0/0:.:140:140:0:0%:74,66,0,0 -Example1_ref 14336 . A . PASS DP=473;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:332:0:0%:154,178,0,0 0/0:.:141:141:0:0%:75,66,0,0 -Example1_ref 14337 . C . PASS DP=477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:154,182,0,0 0/0:.:141:141:0:0%:74,67,0,0 -Example1_ref 14338 . T . PASS DP=478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:155,180,0,0 0/0:.:143:143:0:0%:77,66,0,0 -Example1_ref 14339 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:159,178,0,0 0/0:.:143:143:0:0%:79,64,0,0 -Example1_ref 14340 . T A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=6.9792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:155,179,0,1 0/0:.:145:145:0:0%:78,67,0,0 -Example1_ref 14341 . T . PASS DP=475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:160,173,0,0 0/0:.:142:141:0:0%:76,65,0,0 -Example1_ref 14342 . C . PASS DP=466;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:327:0:0%:154,173,0,0 0/0:.:139:139:0:0%:75,64,0,0 -Example1_ref 14343 . T . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:159,180,0,0 0/0:.:144:144:0:0%:77,67,0,0 -Example1_ref 14344 . A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:160,184,0,0 0/0:.:144:144:0:0%:77,67,0,0 -Example1_ref 14345 . C A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=7.0287E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:1:0.29%:162,180,0,1 0/0:.:145:145:0:0%:79,66,0,0 -Example1_ref 14346 . A . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:163,184,0,0 0/0:.:147:147:0:0%:79,68,0,0 -Example1_ref 14347 . T C . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=7.0588E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:163,184,0,1 0/0:.:146:145:0:0%:78,67,0,0 -Example1_ref 14348 . G T . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=5.0609E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:159,181,1,0 0/0:.:144:143:1:0.69%:76,67,1,0 -Example1_ref 14349 . A AGACAG . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=7.0393E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:162,177,0,1 0/0:.:143:143:0:0%:77,66,0,0 -Example1_ref 14350 . A T . PASS DP=485;SS=0;SSC=0;GPV=1E0;SPV=7.0455E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:340:1:0.29%:158,182,1,0 0/0:.:143:143:0:0%:75,68,0,0 -Example1_ref 14351 . C . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:166,180,0,0 0/0:.:142:142:0:0%:78,64,0,0 -Example1_ref 14352 . A AG . PASS DP=494;SS=0;SSC=0;GPV=1E0;SPV=2.0989E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:165,182,0,1 0/0:.:146:144:2:1.37%:77,67,0,2 -Example1_ref 14353 . C A . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=7.0809E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:180,178,0,1 0/0:.:148:148:0:0%:81,67,0,0 -Example1_ref 14354 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:176,183,0,0 0/0:.:145:145:0:0%:77,68,0,0 -Example1_ref 14355 . A . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:179,183,0,0 0/0:.:149:149:0:0%:81,68,0,0 -Example1_ref 14356 . T G . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=2.9435E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:362:362:0:0%:179,183,0,0 0/0:.:151:150:1:0.66%:82,68,1,0 -Example1_ref 14357 . A G . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=7.0858E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:354:1:0.28%:176,178,0,1 0/0:.:146:146:0:0%:80,66,0,0 -Example1_ref 14358 . G GCTGTC . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=2.0579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:1:0.28%:176,179,1,0 0/0:.:147:145:2:1.36%:82,63,2,0 -Example1_ref 14359 . T . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:178,179,0,0 0/0:.:144:144:0:0%:81,63,0,0 -Example1_ref 14360 . GT G . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=7.0577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:354:1:0.28%:176,178,0,1 0/0:.:148:148:0:0%:86,62,0,0 -Example1_ref 14361 . T TG . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=2.9495E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:176,173,0,0 0/0:.:147:145:1:0.68%:83,62,0,1 -Example1_ref 14362 . T . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:0:0%:174,161,0,0 0/0:.:145:145:0:0%:84,61,0,0 -Example1_ref 14363 . A . PASS DP=487;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:176,165,0,0 0/0:.:146:146:0:0%:83,63,0,0 -Example1_ref 14364 . T . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:176,161,0,0 0/0:.:146:146:0:0%:83,63,0,0 -Example1_ref 14365 . A . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:173,158,0,0 0/0:.:145:145:0:0%:82,63,0,0 -Example1_ref 14366 . A . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:174,161,0,0 0/0:.:146:146:0:0%:83,63,0,0 -Example1_ref 14367 . G . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:328:0:0%:171,157,0,0 0/0:.:142:142:0:0%:81,61,0,0 -Example1_ref 14368 . A AGAC . PASS DP=470;SS=0;SSC=0;GPV=1E0;SPV=3.113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:323:0:0%:165,158,0,0 0/0:.:146:145:1:0.68%:81,64,0,1 -Example1_ref 14369 . A C . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=6.9492E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:173,154,0,1 0/0:.:144:144:0:0%:80,64,0,0 -Example1_ref 14370 . T G . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=5.2048E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:327:326:1:0.31%:174,152,0,1 0/0:.:145:144:1:0.69%:78,66,0,1 -Example1_ref 14371 . T G . PASS DP=471;SS=0;SSC=0;GPV=1E0;SPV=6.9639E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:328:327:1:0.3%:170,157,0,1 0/0:.:143:143:0:0%:76,67,0,0 -Example1_ref 14372 . A . PASS DP=483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:172,168,0,0 0/0:.:143:143:0:0%:75,68,0,0 -Example1_ref 14373 . C A . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=2.9792E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:171,166,0,0 0/0:.:143:142:1:0.7%:76,66,0,1 -Example1_ref 14374 . A ATCTGTC . PASS DP=491;SS=0;SSC=0;GPV=1E0;SPV=7.0265E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:174,170,1,0 0/0:.:146:146:0:0%:77,69,0,0 -Example1_ref 14375 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:344:344:0:0%:172,172,0,0 0/0:.:142:142:0:0%:75,67,0,0 -Example1_ref 14376 . A . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:168,170,0,0 0/0:.:143:143:0:0%:75,68,0,0 -Example1_ref 14377 . T . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:173,165,0,0 0/0:.:142:142:0:0%:74,68,0,0 -Example1_ref 14378 . T . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:173,170,0,0 0/0:.:143:143:0:0%:72,71,0,0 -Example1_ref 14379 . T . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:172,176,0,0 0/0:.:147:147:0:0%:75,72,0,0 -Example1_ref 14380 . G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:163,173,0,0 0/0:.:148:148:0:0%:75,73,0,0 -Example1_ref 14381 . A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:160,178,0,0 0/0:.:141:141:0:0%:70,71,0,0 -Example1_ref 14382 . T . PASS DP=476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:164,171,0,0 0/0:.:141:141:0:0%:72,69,0,0 -Example1_ref 14383 . T . PASS DP=482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:165,172,0,0 0/0:.:145:145:0:0%:75,70,0,0 -Example1_ref 14384 . G T . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=8.8687E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:165,171,0,0 0/0:.:143:141:2:1.4%:73,68,1,1 -Example1_ref 14385 . G . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:338:0:0%:164,174,0,0 0/0:.:142:142:0:0%:71,71,0,0 -Example1_ref 14386 . A G . PASS DP=484;SS=0;SSC=0;GPV=1E0;SPV=6.9772E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:336:1:0.3%:160,176,0,1 0/0:.:146:146:0:0%:73,73,0,0 -Example1_ref 14387 . G . PASS DP=480;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:336:0:0%:159,177,0,0 0/0:.:143:143:0:0%:72,71,0,0 -Example1_ref 14388 . A G . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=7.0588E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:167,180,0,1 0/0:.:145:145:0:0%:74,71,0,0 -Example1_ref 14389 . T . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:169,182,0,0 0/0:.:146:146:0:0%:75,71,0,0 -Example1_ref 14390 . G . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:166,181,0,0 0/0:.:148:148:0:0%:77,71,0,0 -Example1_ref 14391 . A T . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=5.0215E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:347:1:0.29%:165,182,0,1 0/0:.:145:144:1:0.69%:73,71,1,0 -Example1_ref 14392 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:169,184,0,0 0/0:.:149:149:0:0%:77,72,0,0 -Example1_ref 14393 . G A . PASS DP=488;SS=0;SSC=0;GPV=1E0;SPV=2.9918E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:164,178,0,0 0/0:.:146:145:1:0.68%:76,69,0,1 -Example1_ref 14394 . A . PASS DP=490;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:161,181,0,0 0/0:.:148:148:0:0%:76,72,0,0 -Example1_ref 14395 . T . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:166,182,0,0 0/0:.:147:147:0:0%:75,72,0,0 -Example1_ref 14396 . G C . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=7.0482E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:169,181,0,1 0/0:.:147:147:0:0%:75,72,0,0 -Example1_ref 14397 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:170,184,0,0 0/0:.:150:150:0:0%:78,72,0,0 -Example1_ref 14398 . T . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:171,184,0,0 0/0:.:149:149:0:0%:77,72,0,0 -Example1_ref 14399 . G T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=2.9921E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:173,183,0,0 0/0:.:152:151:1:0.66%:81,70,0,1 -Example1_ref 14400 . T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:172,180,0,0 0/0:.:153:153:0:0%:81,72,0,0 -Example1_ref 14401 . T . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:173,182,0,0 0/0:.:154:154:0:0%:82,72,0,0 -Example1_ref 14402 . T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:173,182,0,0 0/0:.:153:153:0:0%:82,71,0,0 -Example1_ref 14403 . T . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:172,180,0,0 0/0:.:151:151:0:0%:82,69,0,0 -Example1_ref 14404 . A . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:169,180,0,0 0/0:.:151:151:0:0%:80,71,0,0 -Example1_ref 14405 . G . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:170,182,0,0 0/0:.:151:151:0:0%:80,71,0,0 -Example1_ref 14406 . T . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:171,183,0,0 0/0:.:153:153:0:0%:82,71,0,0 -Example1_ref 14407 . T . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:351:0:0%:169,182,0,0 0/0:.:152:152:0:0%:82,70,0,0 -Example1_ref 14408 . T . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:171,184,0,0 0/0:.:150:150:0:0%:82,68,0,0 -Example1_ref 14409 . C . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:168,182,0,0 0/0:.:151:151:0:0%:82,69,0,0 -Example1_ref 14410 . TA T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=3.0315E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:169,185,0,0 0/0:.:154:153:1:0.65%:80,73,0,1 -Example1_ref 14411 . A G . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=3.0237E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:169,184,0,0 0/0:.:153:152:1:0.65%:79,73,1,0 -Example1_ref 14412 . A . PASS DP=501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:348:348:0:0%:165,183,0,0 0/0:.:153:153:0:0%:78,75,0,0 -Example1_ref 14413 . A . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:167,183,0,0 0/0:.:153:153:0:0%:80,73,0,0 -Example1_ref 14414 . A . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:171,184,0,0 0/0:.:156:156:0:0%:81,75,0,0 -Example1_ref 14415 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:353:353:0:0%:175,178,0,0 0/0:.:157:157:0:0%:84,73,0,0 -Example1_ref 14416 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:358:358:0:0%:175,183,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 14417 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:174,185,0,0 0/0:.:160:160:0:0%:85,75,0,0 -Example1_ref 14418 . T . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:173,183,0,0 0/0:.:161:161:0:0%:85,76,0,0 -Example1_ref 14419 . A . PASS DP=519;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:361:361:0:0%:176,185,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 14420 . C A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=4.8138E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:352:2:0.56%:175,177,0,2 0/0:.:156:156:0:0%:83,73,0,0 -Example1_ref 14421 . C T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=6.9291E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:351:1:0.28%:168,183,1,0 0/0:.:156:156:0:0%:80,76,0,0 -Example1_ref 14422 . T . PASS DP=516;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:355:0:0%:172,183,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 14423 . AC A . PASS DP=523;SS=0;SSC=0;GPV=1E0;SPV=6.8834E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:359:1:0.28%:177,182,0,1 0/0:.:163:163:0:0%:86,77,0,0 -Example1_ref 14424 . C A . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=6.8677E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:352:1:0.28%:172,180,1,0 0/0:.:161:161:0:0%:85,76,0,0 -Example1_ref 14425 . A . PASS DP=522;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:359:0:0%:174,185,0,0 0/0:.:163:163:0:0%:85,78,0,0 -Example1_ref 14426 . A . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:356:0:0%:173,183,0,0 0/0:.:157:157:0:0%:81,76,0,0 -Example1_ref 14427 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:354:0:0%:174,180,0,0 0/0:.:160:160:0:0%:84,76,0,0 -Example1_ref 14428 . C . PASS DP=511;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:171,179,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 14429 . A T . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=6.8421E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:1:0.28%:173,177,1,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 14430 . C . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:174,171,0,0 0/0:.:159:159:0:0%:84,75,0,0 -Example1_ref 14431 . T . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:178,167,0,0 0/0:.:161:161:0:0%:86,75,0,0 -Example1_ref 14432 . C A . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=3.1873E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:342:342:0:0%:175,167,0,0 0/0:.:160:159:1:0.62%:83,76,1,0 -Example1_ref 14433 . C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:175,171,0,0 0/0:.:160:160:0:0%:86,74,0,0 -Example1_ref 14434 . G . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:172,175,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 14435 . A T . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=3.1727E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:340:0:0%:166,174,0,0 0/0:.:158:157:1:0.63%:81,76,1,0 -Example1_ref 14436 . A C . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=3.1693E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:170,177,0,0 0/0:.:161:160:1:0.62%:84,76,1,0 -Example1_ref 14437 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:176,174,0,0 0/0:.:160:160:0:0%:85,75,0,0 -Example1_ref 14438 . T . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:171,174,0,0 0/0:.:161:161:0:0%:84,77,0,0 -Example1_ref 14439 . G T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=6.9E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:344:1:0.29%:172,172,1,0 0/0:.:155:155:0:0%:78,77,0,0 -Example1_ref 14440 . G . PASS DP=505;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:350:0:0%:176,174,0,0 0/0:.:155:155:0:0%:78,77,0,0 -Example1_ref 14441 . T . PASS DP=518;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:356:355:0:0%:183,172,0,0 0/0:.:162:162:0:0%:85,77,0,0 -Example1_ref 14442 . C G . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=6.9034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:1:0.29%:180,169,0,1 0/0:.:157:157:0:0%:84,73,0,0 -Example1_ref 14443 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:177,175,0,0 0/0:.:162:162:0:0%:84,78,0,0 -Example1_ref 14444 . A . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:357:357:0:0%:180,177,0,0 0/0:.:160:160:0:0%:84,76,0,0 -Example1_ref 14445 . G C . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=6.8421E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:350:1:0.28%:175,175,1,0 0/0:.:162:162:0:0%:84,78,0,0 -Example1_ref 14446 . A T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=6.8431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:348:1:0.29%:173,175,1,0 0/0:.:161:161:0:0%:82,79,0,0 -Example1_ref 14447 . A G . PASS DP=509;SS=0;SSC=0;GPV=1E0;SPV=3.2024E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:170,176,0,0 0/0:.:163:162:1:0.61%:84,78,0,1 -Example1_ref 14448 . TA T . PASS DP=526;SS=0;SSC=0;GPV=1E0;SPV=6.8251E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:359:358:1:0.28%:182,176,1,0 0/0:.:167:167:0:0%:89,78,0,0 -Example1_ref 14449 . A . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:0:0%:180,169,0,0 0/0:.:164:164:0:0%:88,76,0,0 -Example1_ref 14450 . C . PASS DP=515;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:186,166,0,0 0/0:.:163:163:0:0%:87,76,0,0 -Example1_ref 14451 . T . PASS DP=514;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:186,163,0,0 0/0:.:165:165:0:0%:90,75,0,0 -Example1_ref 14452 . T . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:345:0:0%:182,163,0,0 0/0:.:163:163:0:0%:90,73,0,0 -Example1_ref 14453 . T . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:184,155,0,0 0/0:.:164:164:0:0%:88,76,0,0 -Example1_ref 14454 . A . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:341:0:0%:184,157,0,0 0/0:.:163:163:0:0%:89,74,0,0 -Example1_ref 14455 . T . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:183,154,0,0 0/0:.:165:165:0:0%:89,76,0,0 -Example1_ref 14456 . C G . PASS DP=495;SS=0;SSC=0;GPV=1E0;SPV=6.7071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:332:331:1:0.3%:179,152,0,1 0/0:.:163:163:0:0%:88,75,0,0 -Example1_ref 14457 . T . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:331:331:0:0%:182,149,0,0 0/0:.:162:162:0:0%:87,75,0,0 -Example1_ref 14458 . G . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:0:0%:190,152,0,0 0/0:.:164:164:0:0%:89,75,0,0 -Example1_ref 14459 . T . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:343:0:0%:191,152,0,0 0/0:.:167:167:0:0%:92,75,0,0 -Example1_ref 14460 . A C . PASS DP=506;SS=0;SSC=0;GPV=1E0;SPV=5.4628E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:1:0.29%:189,151,0,1 0/0:.:165:164:1:0.61%:89,75,1,0 -Example1_ref 14461 . T G . PASS DP=504;SS=0;SSC=0;GPV=1E0;SPV=6.746E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:340:339:1:0.29%:189,150,1,0 0/0:.:164:164:0:0%:91,73,0,0 -Example1_ref 14462 . A G . PASS DP=502;SS=0;SSC=0;GPV=1E0;SPV=3.2669E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:188,150,0,0 0/0:.:164:163:1:0.61%:90,73,0,1 -Example1_ref 14463 . A . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:185,152,0,0 0/0:.:162:162:0:0%:87,75,0,0 -Example1_ref 14464 . G GTTCTGTCTC . PASS DP=503;SS=0;SSC=0;GPV=1E0;SPV=6.8191E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:343:342:1:0.29%:192,150,1,0 0/0:.:160:160:0:0%:85,75,0,0 -Example1_ref 14465 . T C . PASS DP=507;SS=0;SSC=0;GPV=1E0;SPV=6.8119E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:345:343:1:0.29%:195,148,1,0 0/0:.:162:161:0:0%:87,74,0,0 -Example1_ref 14466 . T . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:194,145,0,0 0/0:.:158:158:0:0%:84,74,0,0 -Example1_ref 14467 . A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:339:339:0:0%:202,137,0,0 0/0:.:158:158:0:0%:86,72,0,0 -Example1_ref 14468 . T . PASS DP=496;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:338:338:0:0%:202,136,0,0 0/0:.:158:158:0:0%:85,73,0,0 -Example1_ref 14469 . A . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:336:0:0%:201,135,0,0 0/0:.:157:157:0:0%:84,73,0,0 -Example1_ref 14470 . T . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:335:0:0%:201,134,0,0 0/0:.:158:158:0:0%:86,72,0,0 -Example1_ref 14471 . T . PASS DP=481;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:329:329:0:0%:195,134,0,0 0/0:.:152:152:0:0%:81,71,0,0 -Example1_ref 14472 . G T . PASS DP=472;SS=0;SSC=0;GPV=1E0;SPV=6.8008E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:321:320:1:0.31%:190,130,1,0 0/0:.:151:151:0:0%:80,71,0,0 -Example1_ref 14473 . G C . PASS DP=455;SS=0;SSC=0;GPV=1E0;SPV=6.7181E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:306:304:1:0.33%:181,123,1,0 0/0:.:149:149:0:0%:77,72,0,0 -Example1_ref 14474 . A . PASS DP=469;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:316:316:0:0%:190,126,0,0 0/0:.:153:153:0:0%:81,72,0,0 -Example1_ref 14475 . A . PASS DP=479;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:324:324:0:0%:193,131,0,0 0/0:.:155:155:0:0%:80,75,0,0 -Example1_ref 14476 . A . PASS DP=486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:326:326:0:0%:196,130,0,0 0/0:.:160:160:0:0%:82,78,0,0 -Example1_ref 14477 . G . PASS DP=492;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:333:0:0%:203,130,0,0 0/0:.:159:159:0:0%:83,76,0,0 -Example1_ref 14478 . A . PASS DP=497;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:334:334:0:0%:204,130,0,0 0/0:.:163:163:0:0%:83,80,0,0 -Example1_ref 14479 . T . PASS DP=499;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:337:337:0:0%:203,134,0,0 0/0:.:162:162:0:0%:81,81,0,0 -Example1_ref 14480 . G GC . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=3.2383E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:197,135,0,0 0/0:.:160:158:1:0.63%:77,81,1,0 -Example1_ref 14481 . TAA T . PASS DP=500;SS=0;SSC=0;GPV=1E0;SPV=6.7E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:335:334:1:0.3%:203,131,0,1 0/0:.:165:165:0:0%:82,83,0,0 -Example1_ref 14482 . A . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:332:0:0%:201,131,0,0 0/0:.:165:165:0:0%:83,82,0,0 -Example1_ref 14483 . A AGAGACAG . PASS DP=498;SS=0;SSC=0;GPV=1E0;SPV=5.5421E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:333:331:1:0.3%:199,132,0,1 0/0:.:165:164:1:0.61%:81,83,0,1 -Example1_ref 14484 . G GCTTTC . PASS DP=533;SS=0;SSC=0;GPV=1E0;SPV=6.8045E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:361:1:0.28%:227,134,1,0 0/0:.:170:170:0:0%:89,81,0,0 -Example1_ref 14485 . TATA T . PASS DP=549;SS=0;SSC=0;GPV=1E0;SPV=6.8306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:374:1:0.27%:230,144,1,0 0/0:.:174:174:0:0%:88,86,0,0 -Example1_ref 14486 . A G . PASS DP=546;SS=0;SSC=0;GPV=1E0;SPV=6.8257E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:371:1:0.27%:226,145,0,1 0/0:.:173:173:0:0%:87,86,0,0 -Example1_ref 14487 . T . PASS DP=545;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:0:0%:227,143,0,0 0/0:.:174:174:0:0%:90,84,0,0 -Example1_ref 14488 . A AAGAGACAG . PASS DP=545;SS=0;SSC=0;GPV=1E0;SPV=6.8073E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:370:1:0.27%:228,142,0,1 0/0:.:174:174:0:0%:90,84,0,0 -Example1_ref 14489 . A . PASS DP=534;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:365:365:0:0%:224,141,0,0 0/0:.:169:169:0:0%:88,81,0,0 -Example1_ref 14490 . T . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:219,144,0,0 0/0:.:172:172:0:0%:89,83,0,0 -Example1_ref 14491 . A . PASS DP=529;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:360:360:0:0%:215,145,0,0 0/0:.:169:169:0:0%:86,83,0,0 -Example1_ref 14492 . T . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:350:349:0:0%:208,141,0,0 0/0:.:163:163:0:0%:83,80,0,0 -Example1_ref 14493 . C . PASS DP=493;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:336:335:0:0%:207,128,0,0 0/0:.:157:157:0:0%:84,73,0,0 -Example1_ref 14494 . A . PASS DP=508;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:0:0%:212,134,0,0 0/0:.:161:161:0:0%:86,75,0,0 -Example1_ref 14495 . C A . PASS DP=513;SS=0;SSC=0;GPV=1E0;SPV=3.1641E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:351:350:0:0%:216,134,0,0 0/0:.:162:161:1:0.62%:91,70,0,1 -Example1_ref 14496 . T . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:354:353:0:0%:217,136,0,0 0/0:.:167:167:0:0%:92,75,0,0 -Example1_ref 14497 . T C . PASS DP=521;SS=0;SSC=0;GPV=1E0;SPV=6.8077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:355:353:1:0.28%:216,137,1,0 0/0:.:166:166:0:0%:91,75,0,0 -Example1_ref 14498 . A . PASS DP=512;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:346:0:0%:211,135,0,0 0/0:.:165:165:0:0%:89,76,0,0 -Example1_ref 14499 . A . PASS DP=517;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:352:352:0:0%:214,138,0,0 0/0:.:165:165:0:0%:91,74,0,0 -Example1_ref 14500 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:346:346:0:0%:209,137,0,0 0/0:.:164:164:0:0%:89,75,0,0 -Example1_ref 14501 . A . PASS DP=510;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:349:349:0:0%:212,137,0,0 0/0:.:161:161:0:0%:86,75,0,0 -Example1_ref 14502 . C . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:224,139,0,0 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 14503 . T . PASS DP=531;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:229,134,0,0 0/0:.:168:168:0:0%:95,73,0,0 -Example1_ref 14504 . T . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:231,139,0,0 0/0:.:166:166:0:0%:96,70,0,0 -Example1_ref 14505 . C . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:368:368:0:0%:229,139,0,0 0/0:.:167:167:0:0%:95,72,0,0 -Example1_ref 14506 . T . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:370:0:0%:230,140,0,0 0/0:.:170:170:0:0%:97,73,0,0 -Example1_ref 14507 . A . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:367:367:0:0%:227,140,0,0 0/0:.:169:169:0:0%:96,73,0,0 -Example1_ref 14508 . A . PASS DP=538;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:371:371:0:0%:228,143,0,0 0/0:.:167:167:0:0%:95,72,0,0 -Example1_ref 14509 . T . PASS DP=530;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:363:363:0:0%:228,135,0,0 0/0:.:167:167:0:0%:96,71,0,0 -Example1_ref 14510 . C A . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=3.1028E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:369:369:0:0%:229,140,0,0 0/0:.:166:165:1:0.6%:93,72,0,1 -Example1_ref 14511 . C T . PASS DP=536;SS=0;SSC=0;GPV=1E0;SPV=3.0597E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:372:372:0:0%:226,146,0,0 0/0:.:164:163:1:0.61%:92,71,1,0 -Example1_ref 14512 . T . PASS DP=540;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:375:375:0:0%:230,145,0,0 0/0:.:165:165:0:0%:94,71,0,0 -Example1_ref 14513 . G GTCTCTTATACA . PASS DP=532;SS=0;SSC=0;GPV=1E0;SPV=5.1749E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:370:368:1:0.27%:224,144,1,0 0/0:.:162:161:1:0.62%:91,70,1,0 -Example1_ref 14514 . C A . PASS DP=543;SS=0;SSC=0;GPV=1E0;SPV=6.9926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:380:378:1:0.26%:231,147,0,1 0/0:.:163:163:0:0%:93,70,0,0 -Example1_ref 14515 . A . PASS DP=545;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:381:381:0:0%:231,150,0,0 0/0:.:164:164:0:0%:94,70,0,0 -Example1_ref 14516 . T G . PASS DP=535;SS=0;SSC=0;GPV=1E0;SPV=6.972E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:372:1:0.27%:228,144,0,1 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 14517 . C . PASS DP=533;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:373:373:0:0%:230,143,0,0 0/0:.:160:160:0:0%:94,66,0,0 -Example1_ref 14518 . A . PASS DP=550;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:384:383:0:0%:228,155,0,0 0/0:.:166:166:0:0%:94,72,0,0 -Example1_ref 14519 . A . PASS DP=561;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:392:392:0:0%:231,161,0,0 0/0:.:169:169:0:0%:93,76,0,0 -Example1_ref 14520 . C A . PASS DP=553;SS=0;SSC=0;GPV=1E0;SPV=6.9801E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:386:385:1:0.26%:230,155,0,1 0/0:.:167:167:0:0%:95,72,0,0 -Example1_ref 14521 . A AG . PASS DP=555;SS=0;SSC=0;GPV=1E0;SPV=5.2416E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:382:1:0.26%:227,155,0,1 0/0:.:172:171:1:0.58%:94,77,0,1 -Example1_ref 14522 . G T . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.0423E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:399:1:0.25%:245,154,1,0 0/0:.:168:168:0:0%:92,76,0,0 -Example1_ref 14523 . A . PASS DP=576;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:243,159,0,0 0/0:.:174:174:0:0%:94,80,0,0 -Example1_ref 14524 . A G . PASS DP=588;SS=0;SSC=0;GPV=1E0;SPV=6.9898E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:410:1:0.24%:249,161,0,1 0/0:.:177:177:0:0%:97,80,0,0 -Example1_ref 14525 . T TAACTCCA . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=2.968E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:417:417:0:0%:254,163,0,0 0/0:.:176:175:1:0.57%:95,80,1,0 -Example1_ref 14526 . T . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:250,165,0,0 0/0:.:178:178:0:0%:95,83,0,0 -Example1_ref 14527 . A G . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=3.0435E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:416:0:0%:251,165,0,0 0/0:.:182:181:1:0.55%:97,84,1,0 -Example1_ref 14528 . T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:252,163,0,0 0/0:.:181:181:0:0%:97,84,0,0 -Example1_ref 14529 . A . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:426:426:0:0%:254,172,0,0 0/0:.:184:184:0:0%:97,87,0,0 -Example1_ref 14530 . C A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=4.8634E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:411:2:0.48%:251,160,0,2 0/0:.:179:179:0:0%:96,83,0,0 -Example1_ref 14531 . C CTGTCTCTTA . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=5.0348E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:417:1:0.24%:252,165,0,1 0/0:.:175:174:1:0.57%:93,81,1,0 -Example1_ref 14532 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:256,168,0,0 0/0:.:174:174:0:0%:93,81,0,0 -Example1_ref 14533 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:254,164,0,0 0/0:.:174:174:0:0%:91,83,0,0 -Example1_ref 14534 . A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:419:0:0%:248,171,0,0 0/0:.:176:176:0:0%:91,85,0,0 -Example1_ref 14535 . T . PASS DP=586;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:413:0:0%:250,163,0,0 0/0:.:173:173:0:0%:91,82,0,0 -Example1_ref 14536 . C . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:251,172,0,0 0/0:.:172:172:0:0%:91,81,0,0 -Example1_ref 14537 . T . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:248,175,0,0 0/0:.:172:172:0:0%:91,81,0,0 -Example1_ref 14538 . C T . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=2.8859E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:424:0:0%:245,179,0,0 0/0:.:172:171:1:0.58%:89,82,1,0 -Example1_ref 14539 . G T . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=7.082E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:431:1:0.23%:242,189,1,0 0/0:.:178:178:0:0%:88,90,0,0 -Example1_ref 14540 . A . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:232,191,0,0 0/0:.:176:176:0:0%:85,91,0,0 -Example1_ref 14541 . A . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:237,196,0,0 0/0:.:181:181:0:0%:89,92,0,0 -Example1_ref 14542 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:240,194,0,0 0/0:.:182:182:0:0%:89,93,0,0 -Example1_ref 14543 . G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:426:0:0%:233,193,0,0 0/0:.:175:175:0:0%:83,92,0,0 -Example1_ref 14544 . A . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:423:0:0%:228,195,0,0 0/0:.:178:178:0:0%:83,95,0,0 -Example1_ref 14545 . C A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=3.6109E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:421:416:3:0.72%:235,181,0,3 0/0:.:169:169:0:0%:83,86,0,0 -Example1_ref 14546 . G T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=2.9313E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:422:0:0%:235,187,0,0 0/0:.:175:174:1:0.57%:85,89,1,0 -Example1_ref 14547 . C G . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=5.0462E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:413:1:0.24%:234,179,0,1 0/0:.:174:173:1:0.57%:85,88,0,1 -Example1_ref 14548 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:237,199,0,0 0/0:.:180:180:0:0%:83,97,0,0 -Example1_ref 14549 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:243,197,0,0 0/0:.:182:182:0:0%:86,96,0,0 -Example1_ref 14550 . A . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:241,199,0,0 0/0:.:177:177:0:0%:81,96,0,0 -Example1_ref 14551 . T . PASS DP=643;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:259,200,0,0 0/0:.:184:184:0:0%:87,97,0,0 -Example1_ref 14552 . T . PASS DP=647;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:465:465:0:0%:259,206,0,0 0/0:.:182:182:0:0%:87,95,0,0 -Example1_ref 14553 . G . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:481:0:0%:276,205,0,0 0/0:.:195:194:0:0%:97,97,0,0 -Example1_ref 14554 . T . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:279,205,0,0 0/0:.:195:195:0:0%:99,96,0,0 -Example1_ref 14555 . A ACCTGTCT . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=7.1345E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:277,210,1,0 0/0:.:196:196:0:0%:99,97,0,0 -Example1_ref 14556 . C A . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=4.825E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:484:1:0.21%:283,201,0,1 0/0:.:189:188:1:0.53%:101,87,0,1 -Example1_ref 14557 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:286,204,0,0 0/0:.:192:192:0:0%:101,91,0,0 -Example1_ref 14558 . A . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:493:0:0%:289,204,0,0 0/0:.:195:195:0:0%:104,91,0,0 -Example1_ref 14559 . T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:504:0:0%:297,207,0,0 0/0:.:199:199:0:0%:106,93,0,0 -Example1_ref 14560 . A . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:292,206,0,0 0/0:.:198:198:0:0%:107,91,0,0 -Example1_ref 14561 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:293,209,0,0 0/0:.:196:196:0:0%:106,90,0,0 -Example1_ref 14562 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:298,195,0,0 0/0:.:193:193:0:0%:106,87,0,0 -Example1_ref 14563 . G T . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=7.2312E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:295,195,1,0 0/0:.:188:188:0:0%:106,82,0,0 -Example1_ref 14564 . G T . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=5.1676E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:492:2:0.4%:292,200,2,0 0/0:.:193:193:0:0%:106,87,0,0 -Example1_ref 14565 . A . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:290,194,0,0 0/0:.:185:185:0:0%:102,83,0,0 -Example1_ref 14566 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:297,194,0,0 0/0:.:191:191:0:0%:106,85,0,0 -Example1_ref 14567 . C A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=3.8402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:477:3:0.62%:299,178,0,3 0/0:.:180:180:0:0%:106,74,0,0 -Example1_ref 14568 . C . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:295,190,0,0 0/0:.:186:186:0:0%:106,80,0,0 -Example1_ref 14569 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:299,197,0,0 0/0:.:190:190:0:0%:107,83,0,0 -Example1_ref 14570 . A . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:299,194,0,0 0/0:.:188:188:0:0%:107,81,0,0 -Example1_ref 14571 . G . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:0:0%:297,197,0,0 0/0:.:190:190:0:0%:107,83,0,0 -Example1_ref 14572 . T C . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=2.7471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:302,197,0,0 0/0:.:189:188:1:0.53%:107,81,0,1 -Example1_ref 14573 . G T . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=7.2889E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:491:1:0.2%:298,193,1,0 0/0:.:183:183:0:0%:104,79,0,0 -Example1_ref 14574 . A . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:290,197,0,0 0/0:.:190:190:0:0%:106,84,0,0 -Example1_ref 14575 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:294,200,0,0 0/0:.:190:190:0:0%:106,84,0,0 -Example1_ref 14576 . G . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:290,197,0,0 0/0:.:189:189:0:0%:106,83,0,0 -Example1_ref 14577 . T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:299,194,0,0 0/0:.:191:191:0:0%:107,84,0,0 -Example1_ref 14578 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:300,200,0,0 0/0:.:192:192:0:0%:108,84,0,0 -Example1_ref 14579 . G . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:294,195,0,0 0/0:.:188:188:0:0%:106,82,0,0 -Example1_ref 14580 . T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:295,200,0,0 0/0:.:189:189:0:0%:106,83,0,0 -Example1_ref 14581 . T . PASS DP=673;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:293,193,0,0 0/0:.:187:187:0:0%:104,83,0,0 -Example1_ref 14582 . T . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:290,200,0,0 0/0:.:187:187:0:0%:103,84,0,0 -Example1_ref 14583 . T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:296,199,0,0 0/0:.:189:189:0:0%:104,85,0,0 -Example1_ref 14584 . A T . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=7.2344E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:1:0.2%:294,202,1,0 0/0:.:190:190:0:0%:105,85,0,0 -Example1_ref 14585 . T . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:293,194,0,0 0/0:.:192:192:0:0%:107,85,0,0 -Example1_ref 14586 . C . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:291,188,0,0 0/0:.:186:186:0:0%:102,84,0,0 -Example1_ref 14587 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:486:0:0%:288,198,0,0 0/0:.:190:190:0:0%:105,85,0,0 -Example1_ref 14588 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:290,200,0,0 0/0:.:190:190:0:0%:106,84,0,0 -Example1_ref 14589 . A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:287,200,0,0 0/0:.:189:189:0:0%:103,86,0,0 -Example1_ref 14590 . A . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:288,201,0,0 0/0:.:190:190:0:0%:104,86,0,0 -Example1_ref 14591 . C A . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=2.7811E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:488:0:0%:294,194,0,0 0/0:.:189:187:1:0.53%:107,80,0,1 -Example1_ref 14592 . T A . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=7.2052E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:1:0.2%:295,199,0,1 0/0:.:192:192:0:0%:107,85,0,0 -Example1_ref 14593 . T . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:294,198,0,0 0/0:.:190:190:0:0%:107,83,0,0 -Example1_ref 14594 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:295,200,0,0 0/0:.:191:191:0:0%:107,84,0,0 -Example1_ref 14595 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:489:489:0:0%:288,201,0,0 0/0:.:189:189:0:0%:105,84,0,0 -Example1_ref 14596 . G . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:292,199,0,0 0/0:.:187:187:0:0%:103,84,0,0 -Example1_ref 14597 . A . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:285,199,0,0 0/0:.:181:181:0:0%:101,80,0,0 -Example1_ref 14598 . G . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:290,206,0,0 0/0:.:182:182:0:0%:99,83,0,0 -Example1_ref 14599 . ATTAT A . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=7.3381E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:509:1:0.2%:296,213,0,1 0/0:.:185:185:0:0%:102,83,0,0 -Example1_ref 14600 . T . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:301,200,0,0 0/0:.:184:184:0:0%:105,79,0,0 -Example1_ref 14601 . T . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:298,206,0,0 0/0:.:183:183:0:0%:105,78,0,0 -Example1_ref 14602 . A . PASS DP=697;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:301,211,0,0 0/0:.:185:185:0:0%:104,81,0,0 -Example1_ref 14603 . TC T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.3731E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:493:1:0.2%:296,197,1,0 0/0:.:176:176:0:0%:104,72,0,0 -Example1_ref 14604 . C . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:497:0:0%:293,204,0,0 0/0:.:180:180:0:0%:101,79,0,0 -Example1_ref 14605 . A . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:296,210,0,0 0/0:.:184:184:0:0%:103,81,0,0 -Example1_ref 14606 . C A . PASS DP=675;SS=0;SSC=0;GPV=1E0;SPV=6.0387E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:494:2:0.4%:294,200,0,2 0/0:.:179:178:1:0.56%:104,74,1,0 -Example1_ref 14607 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:298,192,0,0 0/0:.:180:180:0:0%:105,75,0,0 -Example1_ref 14608 . T C . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=2.6804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:497:0:0%:298,199,0,0 0/0:.:183:181:1:0.55%:105,76,1,0 -Example1_ref 14609 . T A . PASS DP=685;SS=0;SSC=0;GPV=1E0;SPV=2.6715E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:296,206,0,0 0/0:.:183:182:1:0.55%:105,77,0,1 -Example1_ref 14610 . T . PASS DP=691;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:296,210,0,0 0/0:.:185:185:0:0%:104,81,0,0 -Example1_ref 14611 . G T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=4.661E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:497:496:1:0.2%:285,211,0,1 0/0:.:183:182:1:0.55%:103,79,1,0 -Example1_ref 14612 . G T . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=7.2953E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:1:0.2%:285,213,1,0 0/0:.:185:185:0:0%:101,84,0,0 -Example1_ref 14613 . A . PASS DP=687;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:286,214,0,0 0/0:.:187:187:0:0%:103,84,0,0 -Example1_ref 14614 . A . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:292,220,0,0 0/0:.:192:192:0:0%:104,88,0,0 -Example1_ref 14615 . G T . PASS DP=690;SS=0;SSC=0;GPV=1E0;SPV=5.2481E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:498:2:0.4%:286,212,2,0 0/0:.:190:190:0:0%:102,88,0,0 -Example1_ref 14616 . A T . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=7.2006E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:498:1:0.2%:281,217,0,1 0/0:.:194:194:0:0%:105,89,0,0 -Example1_ref 14617 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:506:506:0:0%:289,217,0,0 0/0:.:194:194:0:0%:106,88,0,0 -Example1_ref 14618 . A . PASS DP=700;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:288,219,0,0 0/0:.:193:193:0:0%:105,88,0,0 -Example1_ref 14619 . A . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:515:515:0:0%:287,228,0,0 0/0:.:196:196:0:0%:104,92,0,0 -Example1_ref 14620 . T . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:291,226,0,0 0/0:.:194:194:0:0%:105,89,0,0 -Example1_ref 14621 . A . PASS DP=710;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:513:513:0:0%:286,227,0,0 0/0:.:197:197:0:0%:105,92,0,0 -Example1_ref 14622 . A ATCTG . PASS DP=709;SS=0;SSC=0;GPV=1E0;SPV=4.7471E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:513:1:0.19%:284,229,1,0 0/0:.:195:194:1:0.51%:102,92,1,0 -Example1_ref 14623 . T . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:294,220,0,0 0/0:.:192:192:0:0%:103,89,0,0 -Example1_ref 14624 . C . PASS DP=709;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:516:516:0:0%:289,227,0,0 0/0:.:193:193:0:0%:105,88,0,0 -Example1_ref 14625 . T A . PASS DP=717;SS=0;SSC=0;GPV=1E0;SPV=2.7615E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:519:519:0:0%:289,230,0,0 0/0:.:198:197:1:0.51%:106,91,1,0 -Example1_ref 14626 . A . PASS DP=730;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:530:530:0:0%:298,232,0,0 0/0:.:200:200:0:0%:107,93,0,0 -Example1_ref 14627 . T . PASS DP=721;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:297,228,0,0 0/0:.:196:195:0:0%:108,87,0,0 -Example1_ref 14628 . T A . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=7.2554E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:535:533:1:0.19%:298,235,1,0 0/0:.:202:202:0:0%:108,94,0,0 -Example1_ref 14629 . A . PASS DP=731;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:530:530:0:0%:293,237,0,0 0/0:.:201:201:0:0%:108,93,0,0 -Example1_ref 14630 . A . PASS DP=719;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:520:0:0%:285,235,0,0 0/0:.:199:199:0:0%:105,94,0,0 -Example1_ref 14631 . A . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:520:0:0%:285,235,0,0 0/0:.:195:195:0:0%:100,95,0,0 -Example1_ref 14632 . A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:514:514:0:0%:280,234,0,0 0/0:.:194:194:0:0%:99,95,0,0 -Example1_ref 14633 . T . PASS DP=716;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:520:520:0:0%:287,233,0,0 0/0:.:196:196:0:0%:104,92,0,0 -Example1_ref 14634 . G T . PASS DP=707;SS=0;SSC=0;GPV=1E0;SPV=7.7357E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:510:510:0:0%:278,232,0,0 0/0:.:197:195:2:1.02%:103,92,0,2 -Example1_ref 14635 . G . PASS DP=689;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:0:0%:271,229,0,0 0/0:.:188:188:0:0%:96,92,0,0 -Example1_ref 14636 . A T . PASS DP=706;SS=0;SSC=0;GPV=1E0;SPV=7.2096E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:508:1:0.2%:279,229,1,0 0/0:.:197:197:0:0%:104,93,0,0 -Example1_ref 14637 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:283,218,0,0 0/0:.:191:191:0:0%:106,85,0,0 -Example1_ref 14638 . C G . PASS DP=696;SS=0;SSC=0;GPV=1E0;SPV=7.2414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:1:0.2%:280,223,0,1 0/0:.:192:192:0:0%:98,94,0,0 -Example1_ref 14639 . A T . PASS DP=705;SS=0;SSC=0;GPV=1E0;SPV=2.7376E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:512:512:0:0%:281,231,0,0 0/0:.:193:192:1:0.52%:97,95,1,0 -Example1_ref 14640 . T A . PASS DP=688;SS=0;SSC=0;GPV=1E0;SPV=7.282E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:500:1:0.2%:277,223,1,0 0/0:.:187:187:0:0%:99,88,0,0 -Example1_ref 14641 . T . PASS DP=694;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:275,225,0,0 0/0:.:194:194:0:0%:100,94,0,0 -Example1_ref 14642 . T . PASS DP=701;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:507:507:0:0%:276,231,0,0 0/0:.:194:194:0:0%:100,94,0,0 -Example1_ref 14643 . T . PASS DP=695;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:502:0:0%:275,227,0,0 0/0:.:193:193:0:0%:100,93,0,0 -Example1_ref 14644 . A . PASS DP=698;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:504:0:0%:274,230,0,0 0/0:.:194:194:0:0%:99,95,0,0 -Example1_ref 14645 . T . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:274,221,0,0 0/0:.:191:191:0:0%:98,93,0,0 -Example1_ref 14646 . C . PASS DP=683;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:0:0%:270,224,0,0 0/0:.:188:187:0:0%:97,90,0,0 -Example1_ref 14647 . A . PASS DP=682;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:266,228,0,0 0/0:.:188:188:0:0%:95,93,0,0 -Example1_ref 14648 . A . PASS DP=663;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:252,227,0,0 0/0:.:184:184:0:0%:89,95,0,0 -Example1_ref 14649 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:255,230,0,0 0/0:.:183:183:0:0%:90,93,0,0 -Example1_ref 14650 . G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:256,229,0,0 0/0:.:179:179:0:0%:87,92,0,0 -Example1_ref 14651 . A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:472:472:0:0%:241,231,0,0 0/0:.:184:184:0:0%:89,95,0,0 -Example1_ref 14652 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:253,234,0,0 0/0:.:181:181:0:0%:87,94,0,0 -Example1_ref 14653 . G T . PASS DP=657;SS=0;SSC=0;GPV=1E0;SPV=2.7245E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:244,234,0,0 0/0:.:179:178:1:0.56%:85,93,1,0 -Example1_ref 14654 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:474:0:0%:245,229,0,0 0/0:.:180:180:0:0%:87,93,0,0 -Example1_ref 14655 . G . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:244,231,0,0 0/0:.:175:175:0:0%:86,89,0,0 -Example1_ref 14656 . G A . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.2104E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:472:1:0.21%:241,231,1,0 0/0:.:183:183:0:0%:87,96,0,0 -Example1_ref 14657 . A . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:248,232,0,0 0/0:.:184:184:0:0%:89,95,0,0 -Example1_ref 14658 . A T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=7.2388E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:250,234,1,0 0/0:.:185:185:0:0%:89,96,0,0 -Example1_ref 14659 . T . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:249,231,0,0 0/0:.:181:181:0:0%:87,94,0,0 -Example1_ref 14660 . A . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:251,231,0,0 0/0:.:185:185:0:0%:91,94,0,0 -Example1_ref 14661 . A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:485:0:0%:251,234,0,0 0/0:.:186:185:0:0%:89,96,0,0 -Example1_ref 14662 . T . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:247,228,0,0 0/0:.:178:178:0:0%:87,91,0,0 -Example1_ref 14663 . G GCTGTCTCTT . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=5.2191E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:469:467:2:0.43%:239,228,2,0 0/0:.:180:180:0:0%:84,96,0,0 -Example1_ref 14664 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:467:466:0:0%:242,224,0,0 0/0:.:183:183:0:0%:88,95,0,0 -Example1_ref 14665 . A . PASS DP=639;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:463:463:0:0%:241,222,0,0 0/0:.:176:176:0:0%:85,91,0,0 -Example1_ref 14666 . T TG . PASS DP=633;SS=0;SSC=0;GPV=1E0;SPV=2.7646E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:239,219,0,0 0/0:.:175:174:1:0.57%:85,89,0,1 -Example1_ref 14667 . G C . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=7.2846E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:447:1:0.22%:229,218,1,0 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 14668 . G T . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=7.2431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:443:1:0.23%:222,221,1,0 0/0:.:169:169:0:0%:79,90,0,0 -Example1_ref 14669 . T . PASS DP=620;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:232,219,0,0 0/0:.:169:169:0:0%:83,86,0,0 -Example1_ref 14670 . T C . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=7.2869E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:234,219,0,0 0/0:.:168:166:2:1.19%:80,86,1,1 -Example1_ref 14671 . A . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:234,217,0,0 0/0:.:170:170:0:0%:82,88,0,0 -Example1_ref 14672 . C . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:441:0:0%:230,211,0,0 0/0:.:165:165:0:0%:81,84,0,0 -Example1_ref 14673 . A . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:449:449:0:0%:233,216,0,0 0/0:.:168:168:0:0%:81,87,0,0 -Example1_ref 14674 . T TG . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=7.2583E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:413:412:1:0.24%:206,206,1,0 0/0:.:156:156:0:0%:74,82,0,0 -Example1_ref 14675 . CA C . PASS DP=559;SS=0;SSC=0;GPV=1E0;SPV=7.2987E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:407:1:0.25%:204,203,1,0 0/0:.:151:151:0:0%:72,79,0,0 -Example1_ref 14676 . A ACTGTCGC . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=7.2114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:406:405:1:0.25%:204,201,1,0 0/0:.:157:157:0:0%:72,85,0,0 -Example1_ref 14677 . T . PASS DP=557;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:202,200,0,0 0/0:.:155:155:0:0%:72,83,0,0 -Example1_ref 14678 . G . PASS DP=552;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:200,196,0,0 0/0:.:156:156:0:0%:71,85,0,0 -Example1_ref 14679 . A . PASS DP=560;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:404:404:0:0%:204,200,0,0 0/0:.:156:156:0:0%:72,84,0,0 -Example1_ref 14680 . A . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:202,200,0,0 0/0:.:156:156:0:0%:72,84,0,0 -Example1_ref 14681 . A . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:405:0:0%:203,202,0,0 0/0:.:158:158:0:0%:71,87,0,0 -Example1_ref 14682 . T A . PASS DP=568;SS=0;SSC=0;GPV=1E0;SPV=7.2134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:408:1:0.24%:203,205,0,1 0/0:.:158:158:0:0%:72,86,0,0 -Example1_ref 14683 . C . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:409:409:0:0%:199,210,0,0 0/0:.:154:154:0:0%:69,85,0,0 -Example1_ref 14684 . A G . PASS DP=567;SS=0;SSC=0;GPV=1E0;SPV=7.231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:410:409:1:0.24%:199,210,0,1 0/0:.:157:157:0:0%:69,88,0,0 -Example1_ref 14685 . A . PASS DP=564;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:197,214,0,0 0/0:.:153:153:0:0%:65,88,0,0 -Example1_ref 14686 . G GA . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=4.684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:414:1:0.24%:199,215,0,1 0/0:.:154:153:1:0.65%:65,88,0,1 -Example1_ref 14687 . G . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:191,229,0,0 0/0:.:152:152:0:0%:63,89,0,0 -Example1_ref 14688 . A AC . PASS DP=571;SS=0;SSC=0;GPV=1E0;SPV=2.5919E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:423:423:0:0%:194,229,0,0 0/0:.:148:147:1:0.68%:61,86,0,1 -Example1_ref 14689 . AG A . PASS DP=572;SS=0;SSC=0;GPV=1E0;SPV=7.3252E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:419:418:1:0.24%:193,225,0,1 0/0:.:153:153:0:0%:64,89,0,0 -Example1_ref 14690 . G . PASS DP=569;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:196,222,0,0 0/0:.:151:151:0:0%:63,88,0,0 -Example1_ref 14691 . G T . PASS DP=559;SS=0;SSC=0;GPV=1E0;SPV=5.4816E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:414:412:2:0.48%:194,218,2,0 0/0:.:145:145:0:0%:60,85,0,0 -Example1_ref 14692 . G T . PASS DP=544;SS=0;SSC=0;GPV=1E0;SPV=7.3529E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:399:1:0.25%:183,216,0,1 0/0:.:144:144:0:0%:58,86,0,0 -Example1_ref 14693 . G . PASS DP=553;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:181,227,0,0 0/0:.:145:145:0:0%:55,90,0,0 -Example1_ref 14694 . A . PASS DP=563;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:418:0:0%:190,228,0,0 0/0:.:145:145:0:0%:55,90,0,0 -Example1_ref 14695 . A C . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=7.3451E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:414:1:0.24%:187,227,0,1 0/0:.:150:150:0:0%:60,90,0,0 -Example1_ref 14696 . A T . PASS DP=566;SS=0;SSC=0;GPV=1E0;SPV=2.6195E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:418:417:0:0%:189,228,0,0 0/0:.:148:147:1:0.68%:58,89,1,0 -Example1_ref 14697 . G T . PASS DP=558;SS=0;SSC=0;GPV=1E0;SPV=7.3835E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:411:1:0.24%:190,221,1,0 0/0:.:146:146:0:0%:60,86,0,0 -Example1_ref 14698 . A . PASS DP=578;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:424:423:0:0%:201,222,0,0 0/0:.:154:154:0:0%:65,89,0,0 -Example1_ref 14699 . G . PASS DP=587;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:202,226,0,0 0/0:.:159:159:0:0%:69,90,0,0 -Example1_ref 14700 . A ACAG . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=7.2578E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:441:1:0.23%:211,230,0,1 0/0:.:168:167:0:0%:75,92,0,0 -Example1_ref 14701 . T . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:212,228,0,0 0/0:.:166:166:0:0%:79,87,0,0 -Example1_ref 14702 . T . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:217,225,0,0 0/0:.:169:169:0:0%:77,92,0,0 -Example1_ref 14703 . A . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:216,231,0,0 0/0:.:174:174:0:0%:79,95,0,0 -Example1_ref 14704 . T . PASS DP=617;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:217,228,0,0 0/0:.:172:172:0:0%:80,92,0,0 -Example1_ref 14705 . G . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:220,225,0,0 0/0:.:171:171:0:0%:81,90,0,0 -Example1_ref 14706 . G T . PASS DP=609;SS=0;SSC=0;GPV=1E0;SPV=3.7571E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:436:3:0.68%:211,225,3,0 0/0:.:169:169:0:0%:75,94,0,0 -Example1_ref 14707 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:436:0:0%:215,221,0,0 0/0:.:168:168:0:0%:81,87,0,0 -Example1_ref 14708 . G . PASS DP=614;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:228,217,0,0 0/0:.:169:169:0:0%:80,89,0,0 -Example1_ref 14709 . T . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:231,222,0,0 0/0:.:168:168:0:0%:81,87,0,0 -Example1_ref 14710 . T . PASS DP=623;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:236,223,0,0 0/0:.:164:164:0:0%:82,82,0,0 -Example1_ref 14711 . A . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:233,224,0,0 0/0:.:169:169:0:0%:83,86,0,0 -Example1_ref 14712 . T TAA . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=7.2757E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:446:445:1:0.22%:223,222,0,1 0/0:.:167:167:0:0%:82,85,0,0 -Example1_ref 14713 . G T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.3077E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:436:1:0.23%:213,223,0,1 0/0:.:161:161:0:0%:77,84,0,0 -Example1_ref 14714 . A AG . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=2.6777E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:219,224,0,0 0/0:.:162:161:1:0.62%:79,82,0,1 -Example1_ref 14715 . G . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:215,222,0,0 0/0:.:164:164:0:0%:80,84,0,0 -Example1_ref 14716 . A . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:225,222,0,0 0/0:.:166:166:0:0%:82,84,0,0 -Example1_ref 14717 . C A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=6.1701E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:434:2:0.46%:229,205,0,2 0/0:.:164:163:1:0.61%:84,79,1,0 -Example1_ref 14718 . CAT C . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=4.6075E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:1:0.23%:226,213,0,1 0/0:.:159:158:1:0.63%:82,76,1,0 -Example1_ref 14719 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:461:0:0%:249,212,0,0 0/0:.:175:175:0:0%:96,79,0,0 -Example1_ref 14720 . T . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:251,211,0,0 0/0:.:179:179:0:0%:97,82,0,0 -Example1_ref 14721 . A . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:258,217,0,0 0/0:.:187:187:0:0%:104,83,0,0 -Example1_ref 14722 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:482:0:0%:265,217,0,0 0/0:.:190:190:0:0%:108,82,0,0 -Example1_ref 14723 . C . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:274,210,0,0 0/0:.:193:193:0:0%:114,79,0,0 -Example1_ref 14724 . A . PASS DP=684;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:281,213,0,0 0/0:.:190:190:0:0%:113,77,0,0 -Example1_ref 14725 . T . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:279,213,0,0 0/0:.:189:189:0:0%:112,77,0,0 -Example1_ref 14726 . A C . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=5.1697E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:477:2:0.42%:274,203,2,0 0/0:.:187:187:0:0%:111,76,0,0 -Example1_ref 14727 . T . PASS DP=693;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:505:505:0:0%:277,228,0,0 0/0:.:188:188:0:0%:107,81,0,0 -Example1_ref 14728 . G . PASS DP=664;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:272,212,0,0 0/0:.:180:180:0:0%:106,74,0,0 -Example1_ref 14729 . G T . PASS DP=661;SS=0;SSC=0;GPV=1E0;SPV=2.9E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:480:4:0.83%:269,211,4,0 0/0:.:175:175:0:0%:100,75,0,0 -Example1_ref 14730 . CA C . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.3579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:478:1:0.21%:278,200,1,0 0/0:.:173:172:0:0%:101,71,0,0 -Example1_ref 14731 . A ATGTCT . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=7.3485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:484:1:0.21%:275,209,1,0 0/0:.:175:175:0:0%:102,73,0,0 -Example1_ref 14732 . C A . PASS DP=651;SS=0;SSC=0;GPV=1E0;SPV=7.2769E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:474:472:1:0.21%:276,196,0,1 0/0:.:177:177:0:0%:106,71,0,0 -Example1_ref 14733 . T G . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=7.3013E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:486:1:0.21%:279,207,0,1 0/0:.:181:180:0:0%:108,72,0,0 -Example1_ref 14734 . A . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:493:493:0:0%:281,212,0,0 0/0:.:181:181:0:0%:109,72,0,0 -Example1_ref 14735 . C T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=7.3242E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:478:1:0.21%:282,196,0,1 0/0:.:175:175:0:0%:106,69,0,0 -Example1_ref 14736 . A AAGAGAC . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=7.3204E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:488:1:0.2%:282,206,0,1 0/0:.:179:179:0:0%:109,70,0,0 -Example1_ref 14737 . A C . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=5.3645E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:485:483:2:0.41%:276,207,2,0 0/0:.:177:177:0:0%:106,71,0,0 -Example1_ref 14738 . A ATCCTGTC . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=5.4276E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:477:2:0.42%:272,205,2,0 0/0:.:171:171:0:0%:102,69,0,0 -Example1_ref 14739 . T . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:275,202,0,0 0/0:.:168:168:0:0%:103,65,0,0 -Example1_ref 14740 . CT C . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=6.0732E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:466:464:2:0.43%:265,199,1,1 0/0:.:170:169:1:0.59%:100,69,1,0 -Example1_ref 14741 . T . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:453:453:0:0%:261,192,0,0 0/0:.:165:165:0:0%:99,66,0,0 -Example1_ref 14742 . T . PASS DP=626;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:264,198,0,0 0/0:.:164:164:0:0%:100,64,0,0 -Example1_ref 14743 . C . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:250,193,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 14744 . G . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:247,196,0,0 0/0:.:159:159:0:0%:92,67,0,0 -Example1_ref 14745 . G . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:243,201,0,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 14746 . A . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:240,202,0,0 0/0:.:157:157:0:0%:89,68,0,0 -Example1_ref 14747 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:242,198,0,0 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 14748 . T . PASS DP=591;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:236,198,0,0 0/0:.:157:157:0:0%:88,69,0,0 -Example1_ref 14749 . T . PASS DP=591;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:234,198,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 14750 . C A . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=7.2743E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:426:1:0.23%:233,193,0,1 0/0:.:160:160:0:0%:91,69,0,0 -Example1_ref 14751 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:431:431:0:0%:229,202,0,0 0/0:.:163:163:0:0%:93,70,0,0 -Example1_ref 14752 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:228,204,0,0 0/0:.:162:162:0:0%:92,70,0,0 -Example1_ref 14753 . A . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:429:429:0:0%:227,202,0,0 0/0:.:164:164:0:0%:94,70,0,0 -Example1_ref 14754 . T A . PASS DP=585;SS=0;SSC=0;GPV=1E0;SPV=7.265E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:425:424:1:0.24%:233,191,0,1 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 14755 . C . PASS DP=580;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:226,194,0,0 0/0:.:160:160:0:0%:93,67,0,0 -Example1_ref 14756 . A . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:427:427:0:0%:230,197,0,0 0/0:.:163:163:0:0%:94,69,0,0 -Example1_ref 14757 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:236,200,0,0 0/0:.:164:164:0:0%:95,69,0,0 -Example1_ref 14758 . T . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:428:428:0:0%:239,189,0,0 0/0:.:161:161:0:0%:94,67,0,0 -Example1_ref 14759 . T A . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=2.6891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:235,200,0,0 0/0:.:160:159:1:0.62%:90,69,0,1 -Example1_ref 14760 . T . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:233,200,0,0 0/0:.:162:162:0:0%:92,70,0,0 -Example1_ref 14761 . A T . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=2.6667E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:236,204,0,0 0/0:.:160:159:1:0.62%:91,68,1,0 -Example1_ref 14762 . A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:231,202,0,0 0/0:.:159:159:0:0%:91,68,0,0 -Example1_ref 14763 . A . PASS DP=594;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:231,204,0,0 0/0:.:159:159:0:0%:90,69,0,0 -Example1_ref 14764 . T . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:432:0:0%:235,197,0,0 0/0:.:160:160:0:0%:92,68,0,0 -Example1_ref 14765 . C T . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=7.371E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:239,203,1,0 0/0:.:158:158:0:0%:92,66,0,0 -Example1_ref 14766 . A ACTG . PASS DP=599;SS=0;SSC=0;GPV=1E0;SPV=2.6711E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:439:439:0:0%:236,203,0,0 0/0:.:160:159:1:0.62%:93,66,1,0 -Example1_ref 14767 . T A . PASS DP=596;SS=0;SSC=0;GPV=1E0;SPV=2.6678E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:239,198,0,0 0/0:.:159:158:1:0.63%:94,64,0,1 -Example1_ref 14768 . C . PASS DP=590;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:238,196,0,0 0/0:.:156:156:0:0%:93,63,0,0 -Example1_ref 14769 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:238,204,0,0 0/0:.:156:156:0:0%:91,65,0,0 -Example1_ref 14770 . G A . PASS DP=593;SS=0;SSC=0;GPV=1E0;SPV=7.3818E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:438:436:1:0.23%:237,199,0,1 0/0:.:155:155:0:0%:92,63,0,0 -Example1_ref 14771 . G T . PASS DP=582;SS=0;SSC=0;GPV=1E0;SPV=7.4742E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:434:1:0.23%:232,202,1,0 0/0:.:147:147:0:0%:85,62,0,0 -Example1_ref 14772 . C A . PASS DP=583;SS=0;SSC=0;GPV=1E0;SPV=7.3756E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:430:429:1:0.23%:232,197,0,1 0/0:.:153:153:0:0%:89,64,0,0 -Example1_ref 14773 . G T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=7.3746E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:236,204,1,0 0/0:.:157:157:0:0%:91,66,0,0 -Example1_ref 14774 . A . PASS DP=597;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:237,205,0,0 0/0:.:155:155:0:0%:87,68,0,0 -Example1_ref 14775 . A . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:240,202,0,0 0/0:.:161:161:0:0%:92,69,0,0 -Example1_ref 14776 . A . PASS DP=613;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:451:451:0:0%:243,208,0,0 0/0:.:162:162:0:0%:93,69,0,0 -Example1_ref 14777 . G . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:238,207,0,0 0/0:.:158:158:0:0%:89,69,0,0 -Example1_ref 14778 . A . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:443:0:0%:239,204,0,0 0/0:.:158:158:0:0%:89,69,0,0 -Example1_ref 14779 . ATT A . PASS DP=592;SS=0;SSC=0;GPV=1E0;SPV=2.652E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:435:435:0:0%:231,204,0,0 0/0:.:157:156:1:0.64%:87,69,1,0 -Example1_ref 14780 . T TATA . PASS DP=603;SS=0;SSC=0;GPV=1E0;SPV=7.3798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:444:1:0.22%:240,204,1,0 0/0:.:158:158:0:0%:91,67,0,0 -Example1_ref 14781 . T . PASS DP=598;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:239,201,0,0 0/0:.:158:158:0:0%:89,69,0,0 -Example1_ref 14782 . T C . PASS DP=589;SS=0;SSC=0;GPV=1E0;SPV=7.3345E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:431:1:0.23%:235,196,0,1 0/0:.:157:157:0:0%:90,67,0,0 -Example1_ref 14783 . T . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:445:445:0:0%:241,204,0,0 0/0:.:157:157:0:0%:89,68,0,0 -Example1_ref 14784 . T C . PASS DP=595;SS=0;SSC=0;GPV=1E0;SPV=7.4118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:441:440:1:0.23%:236,204,0,1 0/0:.:154:154:0:0%:87,67,0,0 -Example1_ref 14785 . A . PASS DP=606;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:447:447:0:0%:237,210,0,0 0/0:.:159:159:0:0%:89,70,0,0 -Example1_ref 14786 . T . PASS DP=605;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:236,208,0,0 0/0:.:161:161:0:0%:90,71,0,0 -Example1_ref 14787 . CA C . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=7.3833E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:443:442:1:0.23%:236,206,0,1 0/0:.:157:157:0:0%:86,71,0,0 -Example1_ref 14788 . A . PASS DP=601;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:440:0:0%:233,207,0,0 0/0:.:161:161:0:0%:89,72,0,0 -Example1_ref 14789 . A . PASS DP=600;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:442:442:0:0%:233,209,0,0 0/0:.:158:158:0:0%:87,71,0,0 -Example1_ref 14790 . C . PASS DP=604;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:444:444:0:0%:242,202,0,0 0/0:.:160:160:0:0%:91,69,0,0 -Example1_ref 14791 . T C . PASS DP=602;SS=0;SSC=0;GPV=1E0;SPV=7.309E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:440:439:1:0.23%:241,198,1,0 0/0:.:162:162:0:0%:94,68,0,0 -Example1_ref 14792 . C . PASS DP=610;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:452:0:0%:243,209,0,0 0/0:.:158:158:0:0%:88,70,0,0 -Example1_ref 14793 . C . PASS DP=623;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:457:457:0:0%:243,214,0,0 0/0:.:166:166:0:0%:93,73,0,0 -Example1_ref 14794 . A . PASS DP=627;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:460:460:0:0%:245,215,0,0 0/0:.:167:167:0:0%:94,73,0,0 -Example1_ref 14795 . G . PASS DP=624;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:244,215,0,0 0/0:.:165:165:0:0%:91,74,0,0 -Example1_ref 14796 . A . PASS DP=616;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:454:454:0:0%:238,216,0,0 0/0:.:162:162:0:0%:88,74,0,0 -Example1_ref 14797 . T . PASS DP=622;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:248,210,0,0 0/0:.:164:164:0:0%:93,71,0,0 -Example1_ref 14798 . C . PASS DP=619;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:458:0:0%:247,211,0,0 0/0:.:161:161:0:0%:90,71,0,0 -Example1_ref 14799 . T TAAGAGACAG . PASS DP=621;SS=0;SSC=0;GPV=1E0;SPV=7.3752E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:248,209,0,1 0/0:.:163:163:0:0%:93,70,0,0 -Example1_ref 14800 . G . PASS DP=631;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:461:459:0:0%:255,204,0,0 0/0:.:170:170:0:0%:98,72,0,0 -Example1_ref 14801 . A . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:262,213,0,0 0/0:.:174:174:0:0%:101,73,0,0 -Example1_ref 14802 . C . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:266,207,0,0 0/0:.:168:168:0:0%:97,71,0,0 -Example1_ref 14803 . T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:265,211,0,0 0/0:.:172:172:0:0%:99,73,0,0 -Example1_ref 14804 . A . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:475:475:0:0%:266,209,0,0 0/0:.:170:170:0:0%:102,68,0,0 -Example1_ref 14805 . A . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:269,214,0,0 0/0:.:170:170:0:0%:102,68,0,0 -Example1_ref 14806 . T . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:481:0:0%:272,209,0,0 0/0:.:172:172:0:0%:104,68,0,0 -Example1_ref 14807 . A . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:0:0%:267,215,0,0 0/0:.:170:170:0:0%:102,68,0,0 -Example1_ref 14808 . T . PASS DP=641;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:269,208,0,0 0/0:.:164:164:0:0%:100,64,0,0 -Example1_ref 14809 . C . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:274,206,0,0 0/0:.:168:168:0:0%:105,63,0,0 -Example1_ref 14810 . A ATGGG . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=7.4114E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:482:480:1:0.21%:272,208,1,0 0/0:.:168:168:0:0%:101,67,0,0 -Example1_ref 14811 . A . PASS DP=660;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:275,212,0,0 0/0:.:173:173:0:0%:106,67,0,0 -Example1_ref 14812 . C A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=2.6034E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:483:0:0%:279,204,0,0 0/0:.:170:169:1:0.59%:104,65,1,0 -Example1_ref 14813 . A . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:480:480:0:0%:273,207,0,0 0/0:.:169:169:0:0%:106,63,0,0 -Example1_ref 14814 . A G . PASS DP=657;SS=0;SSC=0;GPV=1E0;SPV=7.4277E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:279,208,1,0 0/0:.:169:169:0:0%:106,63,0,0 -Example1_ref 14815 . T . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:484:484:0:0%:281,203,0,0 0/0:.:170:170:0:0%:107,63,0,0 -Example1_ref 14816 . A ATCTGTCTCTT . PASS DP=651;SS=0;SSC=0;GPV=1E0;SPV=2.5806E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:275,208,0,0 0/0:.:168:167:1:0.6%:103,64,1,0 -Example1_ref 14817 . T . PASS DP=659;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:279,211,0,0 0/0:.:169:169:0:0%:105,64,0,0 -Example1_ref 14818 . A . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:481:481:0:0%:276,205,0,0 0/0:.:167:167:0:0%:105,62,0,0 -Example1_ref 14819 . A T . PASS DP=648;SS=0;SSC=0;GPV=1E0;SPV=4.4472E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:482:1:0.21%:278,204,1,0 0/0:.:165:164:1:0.61%:101,63,1,0 -Example1_ref 14820 . T . PASS DP=644;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:478:478:0:0%:282,196,0,0 0/0:.:166:166:0:0%:103,63,0,0 -Example1_ref 14821 . T . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:476:476:0:0%:280,196,0,0 0/0:.:164:164:0:0%:104,60,0,0 -Example1_ref 14822 . C . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:283,200,0,0 0/0:.:166:166:0:0%:103,63,0,0 -Example1_ref 14823 . A . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:282,197,0,0 0/0:.:166:166:0:0%:106,60,0,0 -Example1_ref 14824 . A C . PASS DP=643;SS=0;SSC=0;GPV=1E0;SPV=2.5505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:280,199,0,0 0/0:.:164:163:1:0.61%:105,58,0,1 -Example1_ref 14825 . A . PASS DP=636;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:477:477:0:0%:274,203,0,0 0/0:.:159:159:0:0%:99,60,0,0 -Example1_ref 14826 . G A . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=7.4884E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:486:485:1:0.21%:281,204,0,1 0/0:.:163:163:0:0%:105,58,0,0 -Example1_ref 14827 . T . PASS DP=645;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:285,198,0,0 0/0:.:162:162:0:0%:105,57,0,0 -Example1_ref 14828 . T . PASS DP=642;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:479:0:0%:279,200,0,0 0/0:.:163:163:0:0%:104,59,0,0 -Example1_ref 14829 . T . PASS DP=633;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:473:473:0:0%:278,195,0,0 0/0:.:160:160:0:0%:105,55,0,0 -Example1_ref 14830 . T . PASS DP=649;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:285,202,0,0 0/0:.:162:162:0:0%:105,57,0,0 -Example1_ref 14831 . C . PASS DP=653;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:286,204,0,0 0/0:.:163:163:0:0%:105,58,0,0 -Example1_ref 14832 . A T . PASS DP=656;SS=0;SSC=0;GPV=1E0;SPV=7.4695E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:282,207,1,0 0/0:.:166:166:0:0%:106,60,0,0 -Example1_ref 14833 . G C . PASS DP=640;SS=0;SSC=0;GPV=1E0;SPV=7.4804E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:479:477:1:0.21%:272,205,0,1 0/0:.:161:161:0:0%:101,60,0,0 -Example1_ref 14834 . A . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:487:487:0:0%:277,210,0,0 0/0:.:163:163:0:0%:102,61,0,0 -Example1_ref 14835 . G T . PASS DP=652;SS=0;SSC=0;GPV=1E0;SPV=4.521E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:481:1:0.21%:275,206,1,0 0/0:.:169:168:1:0.59%:106,62,1,0 -Example1_ref 14836 . A . PASS DP=654;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:483:483:0:0%:278,205,0,0 0/0:.:171:171:0:0%:109,62,0,0 -Example1_ref 14837 . A . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:285,209,0,0 0/0:.:175:175:0:0%:113,62,0,0 -Example1_ref 14838 . C . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:496:0:0%:289,207,0,0 0/0:.:171:171:0:0%:112,59,0,0 -Example1_ref 14839 . A . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:292,202,0,0 0/0:.:174:174:0:0%:113,61,0,0 -Example1_ref 14840 . A . PASS DP=678;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:0:0%:295,206,0,0 0/0:.:176:176:0:0%:114,62,0,0 -Example1_ref 14841 . TC T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=2.5964E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:499:499:0:0%:297,202,0,0 0/0:.:175:174:1:0.57%:115,59,1,0 -Example1_ref 14842 . C A . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=4.5282E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:494:1:0.2%:295,199,0,1 0/0:.:175:173:1:0.57%:114,59,0,1 -Example1_ref 14843 . A . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:502:501:0:0%:294,207,0,0 0/0:.:178:178:0:0%:116,62,0,0 -Example1_ref 14844 . A . PASS DP=677;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:290,210,0,0 0/0:.:177:177:0:0%:116,61,0,0 -Example1_ref 14845 . G . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:293,207,0,0 0/0:.:174:174:0:0%:113,61,0,0 -Example1_ref 14846 . G T . PASS DP=662;SS=0;SSC=0;GPV=1E0;SPV=7.4169E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:490:1:0.2%:284,206,1,0 0/0:.:171:171:0:0%:111,60,0,0 -Example1_ref 14847 . A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:498:498:0:0%:292,206,0,0 0/0:.:173:173:0:0%:113,60,0,0 -Example1_ref 14848 . T A . PASS DP=676;SS=0;SSC=0;GPV=1E0;SPV=7.3373E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:1:0.2%:295,200,0,1 0/0:.:180:180:0:0%:119,61,0,0 -Example1_ref 14849 . G . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:288,204,0,0 0/0:.:177:177:0:0%:116,61,0,0 -Example1_ref 14850 . T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:291,204,0,0 0/0:.:175:175:0:0%:115,60,0,0 -Example1_ref 14851 . T . PASS DP=669;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:490:0:0%:288,202,0,0 0/0:.:179:179:0:0%:118,61,0,0 -Example1_ref 14852 . T . PASS DP=668;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:293,202,0,0 0/0:.:173:173:0:0%:114,59,0,0 -Example1_ref 14853 . T C . PASS DP=666;SS=0;SSC=0;GPV=1E0;SPV=7.3273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:488:487:1:0.2%:287,200,1,0 0/0:.:178:178:0:0%:117,61,0,0 -Example1_ref 14854 . G T . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=2.6387E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:491:491:0:0%:286,205,0,0 0/0:.:176:175:1:0.57%:113,62,1,0 -Example1_ref 14855 . T . PASS DP=680;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:500:500:0:0%:296,204,0,0 0/0:.:180:180:0:0%:120,60,0,0 -Example1_ref 14856 . T . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:496:495:0:0%:295,200,0,0 0/0:.:176:176:0:0%:118,58,0,0 -Example1_ref 14857 . C . PASS DP=665;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:492:492:0:0%:290,202,0,0 0/0:.:173:173:0:0%:114,59,0,0 -Example1_ref 14858 . G . PASS DP=667;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:494:494:0:0%:291,203,0,0 0/0:.:173:173:0:0%:110,63,0,0 -Example1_ref 14859 . A . PASS DP=681;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:501:501:0:0%:294,207,0,0 0/0:.:180:180:0:0%:115,65,0,0 -Example1_ref 14860 . A T . PASS DP=670;SS=0;SSC=0;GPV=1E0;SPV=1.7747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:486:1:0.21%:287,199,1,0 0/0:.:180:177:2:1.12%:113,64,2,0 -Example1_ref 14861 . T TG . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=7.3025E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:490:489:1:0.2%:290,199,1,0 0/0:.:181:181:0:0%:117,64,0,0 -Example1_ref 14862 . G . PASS DP=672;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:495:495:0:0%:290,205,0,0 0/0:.:177:177:0:0%:113,64,0,0 -Example1_ref 14863 . G T . PASS DP=703;SS=0;SSC=0;GPV=1E0;SPV=2.6458E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:517:0:0%:306,211,0,0 0/0:.:186:185:1:0.54%:119,66,1,0 -Example1_ref 14864 . A . PASS DP=715;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:524:524:0:0%:308,216,0,0 0/0:.:191:191:0:0%:124,67,0,0 -Example1_ref 14865 . T . PASS DP=711;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:312,213,0,0 0/0:.:186:186:0:0%:121,65,0,0 -Example1_ref 14866 . T . PASS DP=726;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:533:533:0:0%:315,218,0,0 0/0:.:193:193:0:0%:127,66,0,0 -Example1_ref 14867 . A . PASS DP=745;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:548:548:0:0%:334,214,0,0 0/0:.:197:197:0:0%:130,67,0,0 -Example1_ref 14868 . A . PASS DP=792;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:579:579:0:0%:347,232,0,0 0/0:.:213:212:0:0%:137,75,0,0 -Example1_ref 14869 . T C . PASS DP=795;SS=0;SSC=0;GPV=1E0;SPV=7.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:583:582:1:0.17%:348,234,1,0 0/0:.:212:212:0:0%:139,73,0,0 -Example1_ref 14870 . A G . PASS DP=805;SS=0;SSC=0;GPV=1E0;SPV=7.3259E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:590:588:1:0.17%:346,242,0,1 0/0:.:215:215:0:0%:137,78,0,0 -Example1_ref 14871 . T . PASS DP=797;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:588:588:0:0%:351,237,0,0 0/0:.:209:209:0:0%:133,76,0,0 -Example1_ref 14872 . A . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:587:587:0:0%:351,236,0,0 0/0:.:207:207:0:0%:134,73,0,0 -Example1_ref 14873 . A G . PASS DP=801;SS=0;SSC=0;GPV=1E0;SPV=7.3658E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:590:589:1:0.17%:353,236,0,1 0/0:.:211:211:0:0%:137,74,0,0 -Example1_ref 14874 . C A . PASS DP=785;SS=0;SSC=0;GPV=1E0;SPV=7.414E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:582:581:1:0.17%:354,227,0,1 0/0:.:203:203:0:0%:136,67,0,0 -Example1_ref 14875 . C A . PASS DP=782;SS=0;SSC=0;GPV=1E0;SPV=1.7017E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:576:575:1:0.17%:340,235,0,1 0/0:.:206:203:2:0.98%:130,73,1,1 -Example1_ref 14876 . C A . PASS DP=777;SS=0;SSC=0;GPV=1E0;SPV=7.108E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:570:565:3:0.53%:337,228,3,0 0/0:.:207:205:1:0.49%:130,75,1,0 -Example1_ref 14877 . A . PASS DP=773;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:562:561:0:0%:344,217,0,0 0/0:.:211:211:0:0%:133,78,0,0 -Example1_ref 14878 . T G . PASS DP=771;SS=0;SSC=0;GPV=1E0;SPV=2.6848E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:564:564:0:0%:344,220,0,0 0/0:.:207:206:1:0.48%:134,72,0,1 -Example1_ref 14879 . G T . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=2.01E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:557:557:0:0%:335,222,0,0 0/0:.:209:206:3:1.44%:128,78,2,1 -Example1_ref 14880 . A ATGATTTAATT . PASS DP=789;SS=0;SSC=0;GPV=1E0;SPV=7.2589E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:573:571:1:0.17%:340,231,1,0 0/0:.:216:216:0:0%:135,81,0,0 -Example1_ref 14881 . T . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:577:577:0:0%:343,234,0,0 0/0:.:217:217:0:0%:139,78,0,0 -Example1_ref 14882 . G GTGT . PASS DP=782;SS=0;SSC=0;GPV=1E0;SPV=5.2444E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:566:563:2:0.35%:334,229,0,2 0/0:.:216:215:0:0%:136,79,0,0 -Example1_ref 14883 . A ATT . PASS DP=786;SS=0;SSC=0;GPV=1E0;SPV=7.1975E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:566:564:1:0.18%:334,230,1,0 0/0:.:220:220:0:0%:138,82,0,0 -Example1_ref 14884 . T . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:573:573:0:0%:342,231,0,0 0/0:.:221:221:0:0%:139,82,0,0 -Example1_ref 14885 . A . PASS DP=788;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:568:567:0:0%:336,231,0,0 0/0:.:220:220:0:0%:137,83,0,0 -Example1_ref 14886 . A T . PASS DP=796;SS=0;SSC=0;GPV=1E0;SPV=7.1859E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:572:571:1:0.17%:335,236,0,1 0/0:.:224:224:0:0%:136,88,0,0 -Example1_ref 14887 . G T . PASS DP=771;SS=0;SSC=0;GPV=1E0;SPV=7.1429E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:551:549:1:0.18%:316,233,1,0 0/0:.:220:220:0:0%:134,86,0,0 -Example1_ref 14888 . A . PASS DP=774;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:550:550:0:0%:323,227,0,0 0/0:.:224:224:0:0%:138,86,0,0 -Example1_ref 14889 . G T . PASS DP=755;SS=0;SSC=0;GPV=1E0;SPV=5.2027E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:544:542:2:0.37%:312,230,2,0 0/0:.:211:210:0:0%:128,82,0,0 -Example1_ref 14890 . A . PASS DP=765;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:549:549:0:0%:321,228,0,0 0/0:.:216:216:0:0%:130,86,0,0 -Example1_ref 14891 . C . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:551:551:0:0%:325,226,0,0 0/0:.:217:217:0:0%:133,84,0,0 -Example1_ref 14892 . A . PASS DP=771;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:552:550:0:0%:322,228,0,0 0/0:.:219:218:0:0%:134,84,0,0 -Example1_ref 14893 . T G . PASS DP=775;SS=0;SSC=0;GPV=1E0;SPV=4.7782E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:560:557:1:0.18%:329,228,0,1 0/0:.:215:213:1:0.47%:132,81,0,1 -Example1_ref 14894 . A . PASS DP=781;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:562:560:0:0%:330,230,0,0 0/0:.:219:218:0:0%:133,85,0,0 -Example1_ref 14895 . A T . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=2.8258E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:558:556:0:0%:328,228,0,0 0/0:.:220:218:1:0.46%:134,84,0,1 -Example1_ref 14896 . A . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:560:558:0:0%:320,238,0,0 0/0:.:220:219:0:0%:132,87,0,0 -Example1_ref 14897 . T C . PASS DP=773;SS=0;SSC=0;GPV=1E0;SPV=7.2078E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:557:554:1:0.18%:324,230,1,0 0/0:.:216:215:0:0%:133,82,0,0 -Example1_ref 14898 . T C . PASS DP=762;SS=0;SSC=0;GPV=1E0;SPV=7.1014E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:541:538:1:0.19%:308,230,1,0 0/0:.:221:220:0:0%:131,89,0,0 -Example1_ref 14899 . A . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:548:546:0:0%:314,232,0,0 0/0:.:218:217:0:0%:128,89,0,0 -Example1_ref 14900 . G A . PASS DP=751;SS=0;SSC=0;GPV=1E0;SPV=4.9116E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:536:532:1:0.19%:303,229,0,1 0/0:.:215:213:1:0.47%:128,85,0,1 -Example1_ref 14901 . G T . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=4.9065E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:517:513:1:0.19%:282,231,1,0 0/0:.:207:205:1:0.49%:119,86,1,0 -Example1_ref 14902 . C A . PASS DP=747;SS=0;SSC=0;GPV=1E0;SPV=7.1505E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:531:1:0.19%:300,231,1,0 0/0:.:213:212:0:0%:126,86,0,0 -Example1_ref 14903 . G T . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=4.8866E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:518:514:1:0.19%:290,224,0,1 0/0:.:206:204:1:0.49%:120,84,1,0 -Example1_ref 14904 . G A . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=2.894E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:523:0:0%:296,227,0,0 0/0:.:214:212:1:0.47%:129,83,0,1 -Example1_ref 14905 . G T . PASS DP=733;SS=0;SSC=0;GPV=1E0;SPV=7.137E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:520:1:0.19%:288,232,1,0 0/0:.:210:209:0:0%:123,86,0,0 -Example1_ref 14906 . A T . PASS DP=745;SS=0;SSC=0;GPV=1E0;SPV=2.8937E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:530:528:0:0%:289,239,0,0 0/0:.:215:214:1:0.47%:122,92,1,0 -Example1_ref 14907 . G . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:543:543:0:0%:289,254,0,0 0/0:.:217:217:0:0%:124,93,0,0 -Example1_ref 14908 . A T . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=2.9426E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:590:590:0:0%:342,248,0,0 0/0:.:246:245:1:0.41%:147,98,1,0 -Example1_ref 14909 . T C . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=7.1205E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:591:590:1:0.17%:331,259,0,1 0/0:.:239:239:0:0%:141,98,0,0 -Example1_ref 14910 . A . PASS DP=832;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:593:593:0:0%:330,263,0,0 0/0:.:239:239:0:0%:140,99,0,0 -Example1_ref 14911 . T C . PASS DP=810;SS=0;SSC=0;GPV=1E0;SPV=7.1235E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:577:576:1:0.17%:314,262,1,0 0/0:.:233:233:0:0%:133,100,0,0 -Example1_ref 14912 . A . PASS DP=817;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:582:582:0:0%:320,262,0,0 0/0:.:235:235:0:0%:134,101,0,0 -Example1_ref 14913 . AT A . PASS DP=841;SS=0;SSC=0;GPV=1E0;SPV=7.1463E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:601:600:1:0.17%:333,267,0,1 0/0:.:240:240:0:0%:141,99,0,0 -Example1_ref 14914 . T . PASS DP=825;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:587:586:0:0%:323,263,0,0 0/0:.:238:238:0:0%:141,97,0,0 -Example1_ref 14915 . A ATC . PASS DP=830;SS=0;SSC=0;GPV=1E0;SPV=2.8795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:591:591:0:0%:328,263,0,0 0/0:.:239:238:1:0.42%:138,100,1,0 -Example1_ref 14916 . T C . PASS DP=823;SS=0;SSC=0;GPV=1E0;SPV=7.1046E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:585:583:1:0.17%:324,259,1,0 0/0:.:238:238:0:0%:139,99,0,0 -Example1_ref 14917 . A C . PASS DP=773;SS=0;SSC=0;GPV=1E0;SPV=5.0231E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:548:546:2:0.36%:322,224,2,0 0/0:.:225:225:0:0%:137,88,0,0 -Example1_ref 14918 . T A . PASS DP=771;SS=0;SSC=0;GPV=1E0;SPV=7.0741E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:546:543:1:0.18%:324,219,0,1 0/0:.:225:225:0:0%:140,85,0,0 -Example1_ref 14919 . T . PASS DP=752;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:528:0:0%:315,213,0,0 0/0:.:224:224:0:0%:138,86,0,0 -Example1_ref 14920 . C . PASS DP=744;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:525:525:0:0%:314,211,0,0 0/0:.:219:219:0:0%:138,81,0,0 -Example1_ref 14921 . C A . PASS DP=739;SS=0;SSC=0;GPV=1E0;SPV=1.5281E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:520:2:0.38%:307,213,0,2 0/0:.:216:213:3:1.39%:133,80,0,3 -Example1_ref 14922 . C A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=7.1448E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:523:522:1:0.19%:302,220,0,1 0/0:.:209:209:0:0%:131,78,0,0 -Example1_ref 14923 . A . PASS DP=757;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:534:0:0%:307,227,0,0 0/0:.:223:223:0:0%:134,89,0,0 -Example1_ref 14924 . C T . PASS DP=748;SS=0;SSC=0;GPV=1E0;SPV=7.0588E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:527:1:0.19%:308,219,1,0 0/0:.:220:220:0:0%:135,85,0,0 -Example1_ref 14925 . T . PASS DP=761;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:537:0:0%:311,226,0,0 0/0:.:224:224:0:0%:135,89,0,0 -Example1_ref 14926 . G . PASS DP=754;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:531:0:0%:309,222,0,0 0/0:.:223:223:0:0%:136,87,0,0 -Example1_ref 14927 . A . PASS DP=759;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:534:534:0:0%:306,228,0,0 0/0:.:225:225:0:0%:135,90,0,0 -Example1_ref 14928 . A . PASS DP=760;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:536:536:0:0%:306,230,0,0 0/0:.:224:224:0:0%:136,88,0,0 -Example1_ref 14929 . A G . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=7.0419E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:538:537:1:0.19%:309,228,1,0 0/0:.:226:226:0:0%:136,90,0,0 -Example1_ref 14930 . A . PASS DP=769;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:540:540:0:0%:310,230,0,0 0/0:.:229:229:0:0%:136,93,0,0 -Example1_ref 14931 . A . PASS DP=765;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:542:542:0:0%:308,234,0,0 0/0:.:223:223:0:0%:131,92,0,0 -Example1_ref 14932 . T . PASS DP=770;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:543:543:0:0%:313,230,0,0 0/0:.:227:227:0:0%:135,92,0,0 -Example1_ref 14933 . A . PASS DP=776;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:544:544:0:0%:311,233,0,0 0/0:.:232:232:0:0%:136,96,0,0 -Example1_ref 14934 . A T . PASS DP=778;SS=0;SSC=0;GPV=1E0;SPV=2.9949E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:545:545:0:0%:311,234,0,0 0/0:.:233:232:1:0.43%:136,96,1,0 -Example1_ref 14935 . G . PASS DP=765;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:539:539:0:0%:308,231,0,0 0/0:.:226:226:0:0%:133,93,0,0 -Example1_ref 14936 . G T . PASS DP=753;SS=0;SSC=0;GPV=1E0;SPV=5.086E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:528:527:1:0.19%:299,228,0,1 0/0:.:225:224:1:0.44%:131,93,0,1 -Example1_ref 14937 . G T . PASS DP=768;SS=0;SSC=0;GPV=1E0;SPV=5.1556E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:535:533:1:0.19%:299,234,0,1 0/0:.:233:232:1:0.43%:135,97,1,0 -Example1_ref 14938 . A . PASS DP=775;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:537:537:0:0%:305,232,0,0 0/0:.:238:238:0:0%:136,102,0,0 -Example1_ref 14939 . A . PASS DP=780;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:540:540:0:0%:306,234,0,0 0/0:.:240:240:0:0%:135,105,0,0 -Example1_ref 14940 . A . PASS DP=801;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:557:557:0:0%:321,236,0,0 0/0:.:244:244:0:0%:139,105,0,0 -Example1_ref 14941 . G . PASS DP=821;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:566:566:0:0%:326,240,0,0 0/0:.:255:255:0:0%:149,106,0,0 -Example1_ref 14942 . T C . PASS DP=836;SS=0;SSC=0;GPV=1E0;SPV=6.9102E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:577:576:1:0.17%:332,244,1,0 0/0:.:259:258:0:0%:152,106,0,0 -Example1_ref 14943 . T C . PASS DP=831;SS=0;SSC=0;GPV=1E0;SPV=5.2366E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:573:572:1:0.17%:332,240,1,0 0/0:.:258:256:1:0.39%:150,106,1,0 -Example1_ref 14944 . A . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:571:571:0:0%:333,238,0,0 0/0:.:257:256:0:0%:150,106,0,0 -Example1_ref 14945 . A . PASS DP=827;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:569:568:0:0%:326,242,0,0 0/0:.:258:257:0:0%:149,108,0,0 -Example1_ref 14946 . G . PASS DP=811;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:559:558:0:0%:316,242,0,0 0/0:.:252:252:0:0%:147,105,0,0 -Example1_ref 14947 . A G . PASS DP=823;SS=0;SSC=0;GPV=1E0;SPV=6.8735E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:565:564:1:0.18%:319,245,0,1 0/0:.:258:257:0:0%:149,108,0,0 -Example1_ref 14948 . C A . PASS DP=828;SS=0;SSC=0;GPV=1E0;SPV=5.2521E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:570:569:1:0.18%:323,246,1,0 0/0:.:258:256:1:0.39%:150,106,0,1 -Example1_ref 14949 . T . PASS DP=845;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:578:578:0:0%:328,250,0,0 0/0:.:267:266:0:0%:151,115,0,0 -Example1_ref 14950 . G T . PASS DP=865;SS=0;SSC=0;GPV=1E0;SPV=6.8671E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:594:593:1:0.17%:337,256,0,1 0/0:.:271:271:0:0%:153,118,0,0 -Example1_ref 14951 . C A . PASS DP=886;SS=0;SSC=0;GPV=1E0;SPV=6.8623E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:608:607:1:0.16%:341,266,0,1 0/0:.:278:278:0:0%:154,124,0,0 -Example1_ref 14952 . T . PASS DP=901;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:621:621:0:0%:341,280,0,0 0/0:.:280:279:0:0%:154,125,0,0 -Example1_ref 14953 . A ATCTG . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=6.9137E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:625:624:1:0.16%:344,280,1,0 0/0:.:279:279:0:0%:152,127,0,0 -Example1_ref 14954 . T . PASS DP=893;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:613:613:0:0%:341,272,0,0 0/0:.:280:280:0:0%:156,124,0,0 -Example1_ref 14955 . C A . PASS DP=891;SS=0;SSC=0;GPV=1E0;SPV=6.7485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:613:611:2:0.33%:336,275,1,1 0/0:.:278:277:1:0.36%:153,124,1,0 -Example1_ref 14956 . G T . PASS DP=902;SS=0;SSC=0;GPV=1E0;SPV=3.1153E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:621:621:0:0%:340,281,0,0 0/0:.:281:280:1:0.36%:152,128,1,0 -Example1_ref 14957 . A T . PASS DP=911;SS=0;SSC=0;GPV=1E0;SPV=5.1743E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:633:632:1:0.16%:341,291,1,0 0/0:.:278:277:1:0.36%:147,130,1,0 -Example1_ref 14958 . G . PASS DP=899;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:623:623:0:0%:333,290,0,0 0/0:.:276:276:0:0%:149,127,0,0 -Example1_ref 14959 . A C . PASS DP=904;SS=0;SSC=0;GPV=1E0;SPV=3.134E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:621:620:0:0%:329,291,0,0 0/0:.:283:282:1:0.35%:151,131,1,0 -Example1_ref 14960 . A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:625:625:0:0%:336,289,0,0 0/0:.:285:285:0:0%:153,132,0,0 -Example1_ref 14961 . G T . PASS DP=926;SS=0;SSC=0;GPV=1E0;SPV=3.0486E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:644:643:0:0%:346,297,0,0 0/0:.:282:281:1:0.35%:152,129,0,1 -Example1_ref 14962 . A . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:654:653:0:0%:340,313,0,0 0/0:.:292:292:0:0%:153,139,0,0 -Example1_ref 14963 . C . PASS DP=941;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:649:649:0:0%:345,304,0,0 0/0:.:292:292:0:0%:156,136,0,0 -Example1_ref 14964 . T A . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=4.832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:665:662:2:0.3%:343,319,0,2 0/0:.:291:291:0:0%:152,139,0,0 -Example1_ref 14965 . A G . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=4.8051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:665:2:0.3%:348,317,0,2 0/0:.:295:295:0:0%:152,143,0,0 -Example1_ref 14966 . G T . PASS DP=972;SS=0;SSC=0;GPV=1E0;SPV=6.893E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:669:1:0.15%:353,316,1,0 0/0:.:302:302:0:0%:157,145,0,0 -Example1_ref 14967 . T . PASS DP=997;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:689:689:0:0%:358,331,0,0 0/0:.:308:308:0:0%:163,145,0,0 -Example1_ref 14968 . A ATCTGTCTC . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=5.2146E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:685:684:1:0.15%:352,332,1,0 0/0:.:305:304:1:0.33%:158,146,1,0 -Example1_ref 14969 . T C . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=6.9596E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:689:688:1:0.15%:357,331,1,0 0/0:.:301:301:0:0%:158,143,0,0 -Example1_ref 14970 . T C . PASS DP=991;SS=0;SSC=0;GPV=1E0;SPV=6.892E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:683:682:1:0.15%:355,327,1,0 0/0:.:308:308:0:0%:161,147,0,0 -Example1_ref 14971 . A T . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=4.7331E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:684:682:2:0.29%:357,325,1,1 0/0:.:310:310:0:0%:162,148,0,0 -Example1_ref 14972 . A T . PASS DP=983;SS=0;SSC=0;GPV=1E0;SPV=3.1333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:675:0:0%:351,324,0,0 0/0:.:308:307:1:0.32%:162,145,1,0 -Example1_ref 14973 . G T . PASS DP=981;SS=0;SSC=0;GPV=1E0;SPV=6.8807E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:674:1:0.15%:350,324,1,0 0/0:.:306:306:0:0%:162,144,0,0 -Example1_ref 14974 . T C . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=3.1402E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:675:0:0%:352,323,0,0 0/0:.:309:308:1:0.32%:162,146,1,0 -Example1_ref 14975 . T . PASS DP=974;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:670:0:0%:355,315,0,0 0/0:.:304:304:0:0%:164,140,0,0 -Example1_ref 14976 . G . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:659:659:0:0%:353,306,0,0 0/0:.:301:301:0:0%:162,139,0,0 -Example1_ref 14977 . G A . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=6.853E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:661:1:0.15%:352,309,0,1 0/0:.:304:304:0:0%:164,140,0,0 -Example1_ref 14978 . AT A . PASS DP=975;SS=0;SSC=0;GPV=1E0;SPV=6.8821E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:670:1:0.15%:352,318,0,1 0/0:.:304:304:0:0%:160,144,0,0 -Example1_ref 14979 . T . PASS DP=964;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:662:0:0%:354,308,0,0 0/0:.:302:302:0:0%:162,140,0,0 -Example1_ref 14980 . T C . PASS DP=953;SS=0;SSC=0;GPV=1E0;SPV=6.8277E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:651:649:1:0.15%:341,308,1,0 0/0:.:302:302:0:0%:159,143,0,0 -Example1_ref 14981 . T . PASS DP=971;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:663:663:0:0%:353,310,0,0 0/0:.:308:308:0:0%:165,143,0,0 -Example1_ref 14982 . C T . PASS DP=975;SS=0;SSC=0;GPV=1E0;SPV=6.8308E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:665:1:0.15%:352,313,1,0 0/0:.:309:309:0:0%:166,143,0,0 -Example1_ref 14983 . G A . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=4.7006E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:668:2:0.3%:356,312,0,2 0/0:.:307:307:0:0%:163,144,0,0 -Example1_ref 14984 . T G . PASS DP=988;SS=0;SSC=0;GPV=1E0;SPV=3.1579E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:676:676:0:0%:357,319,0,0 0/0:.:312:311:1:0.32%:169,142,0,1 -Example1_ref 14985 . T C . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=4.6491E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:665:2:0.3%:352,313,1,1 0/0:.:311:311:0:0%:168,143,0,0 -Example1_ref 14986 . A T . PASS DP=983;SS=0;SSC=0;GPV=1E0;SPV=6.8464E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:673:672:1:0.15%:357,315,0,1 0/0:.:310:310:0:0%:166,144,0,0 -Example1_ref 14987 . T . PASS DP=979;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:668:0:0%:357,311,0,0 0/0:.:311:311:0:0%:171,140,0,0 -Example1_ref 14988 . C . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:671:0:0%:355,316,0,0 0/0:.:309:309:0:0%:169,140,0,0 -Example1_ref 14989 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:685:685:0:0%:359,326,0,0 0/0:.:315:315:0:0%:171,144,0,0 -Example1_ref 14990 . T C . PASS DP=977;SS=0;SSC=0;GPV=1E0;SPV=3.1872E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:664:3:0.45%:347,317,2,1 0/0:.:309:309:0:0%:169,140,0,0 -Example1_ref 14991 . T C . PASS DP=977;SS=0;SSC=0;GPV=1E0;SPV=6.8373E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:667:1:0.15%:347,320,1,0 0/0:.:309:309:0:0%:166,143,0,0 -Example1_ref 14992 . A . PASS DP=981;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:670:0:0%:345,325,0,0 0/0:.:311:311:0:0%:165,146,0,0 -Example1_ref 14993 . T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:342,319,0,0 0/0:.:309:309:0:0%:169,140,0,0 -Example1_ref 14994 . C . PASS DP=969;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:659:659:0:0%:338,321,0,0 0/0:.:310:310:0:0%:164,146,0,0 -Example1_ref 14995 . G A . PASS DP=953;SS=0;SSC=0;GPV=1E0;SPV=5.3405E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:649:1:0.15%:331,318,0,1 0/0:.:303:301:1:0.33%:156,145,0,1 -Example1_ref 14996 . A T . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=3.215E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:650:0:0%:331,319,0,0 0/0:.:308:307:1:0.32%:160,147,1,0 -Example1_ref 14997 . C T . PASS DP=941;SS=0;SSC=0;GPV=1E0;SPV=5.3331E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:643:642:1:0.16%:337,305,0,1 0/0:.:298:297:1:0.34%:156,141,1,0 -Example1_ref 14998 . T A . PASS DP=956;SS=0;SSC=0;GPV=1E0;SPV=5.3366E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:653:652:1:0.15%:337,315,1,0 0/0:.:303:302:1:0.33%:161,141,0,1 -Example1_ref 14999 . C G . PASS DP=949;SS=0;SSC=0;GPV=1E0;SPV=3.1646E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:648:648:0:0%:335,313,0,0 0/0:.:301:299:1:0.33%:162,137,0,1 -Example1_ref 15000 . G GTA . PASS DP=957;SS=0;SSC=0;GPV=1E0;SPV=6.8443E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:655:654:1:0.15%:334,320,1,0 0/0:.:302:302:0:0%:159,143,0,0 -Example1_ref 15001 . A . PASS DP=965;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:341,320,0,0 0/0:.:304:304:0:0%:161,143,0,0 -Example1_ref 15002 . T G . PASS DP=960;SS=0;SSC=0;GPV=1E0;SPV=3.1458E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:658:658:0:0%:343,315,0,0 0/0:.:302:301:1:0.33%:160,141,0,1 -Example1_ref 15003 . T . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:344,317,0,0 0/0:.:307:307:0:0%:163,144,0,0 -Example1_ref 15004 . A . PASS DP=963;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:657:657:0:0%:334,323,0,0 0/0:.:306:306:0:0%:159,147,0,0 -Example1_ref 15005 . CT C . PASS DP=952;SS=0;SSC=0;GPV=1E0;SPV=6.8908E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:656:655:1:0.15%:346,309,0,1 0/0:.:296:296:0:0%:157,139,0,0 -Example1_ref 15006 . T A . PASS DP=969;SS=0;SSC=0;GPV=1E0;SPV=3.1373E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:665:665:0:0%:348,317,0,0 0/0:.:304:303:1:0.33%:160,143,1,0 -Example1_ref 15007 . T G . PASS DP=965;SS=0;SSC=0;GPV=1E0;SPV=6.8705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:663:662:1:0.15%:343,319,1,0 0/0:.:302:302:0:0%:161,141,0,0 -Example1_ref 15008 . AC A . PASS DP=965;SS=0;SSC=0;GPV=1E0;SPV=6.9016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:665:1:0.15%:344,321,0,1 0/0:.:299:299:0:0%:157,142,0,0 -Example1_ref 15009 . C . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:664:663:0:0%:340,323,0,0 0/0:.:298:298:0:0%:157,141,0,0 -Example1_ref 15010 . G . PASS DP=947;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:653:653:0:0%:334,319,0,0 0/0:.:294:294:0:0%:156,138,0,0 -Example1_ref 15011 . G T . PASS DP=929;SS=0;SSC=0;GPV=1E0;SPV=5.2563E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:640:639:1:0.16%:326,313,1,0 0/0:.:289:288:1:0.35%:151,137,1,0 -Example1_ref 15012 . G T . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=3.0932E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:652:652:0:0%:331,321,0,0 0/0:.:292:291:1:0.34%:147,144,1,0 -Example1_ref 15013 . T . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:662:0:0%:341,321,0,0 0/0:.:300:300:0:0%:160,140,0,0 -Example1_ref 15014 . C . PASS DP=936;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:650:0:0%:341,309,0,0 0/0:.:286:286:0:0%:155,131,0,0 -Example1_ref 15015 . G T . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=6.8538E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:647:646:1:0.15%:335,311,1,0 0/0:.:297:297:0:0%:158,139,0,0 -Example1_ref 15016 . C . PASS DP=947;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:656:656:0:0%:340,316,0,0 0/0:.:291:291:0:0%:158,133,0,0 -Example1_ref 15017 . T A . PASS DP=961;SS=0;SSC=0;GPV=1E0;SPV=6.8887E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:661:1:0.15%:337,324,1,0 0/0:.:299:299:0:0%:158,141,0,0 -Example1_ref 15018 . T . PASS DP=954;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:659:659:0:0%:333,326,0,0 0/0:.:295:295:0:0%:157,138,0,0 -Example1_ref 15019 . T . PASS DP=959;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:656:656:0:0%:340,316,0,0 0/0:.:303:303:0:0%:162,141,0,0 -Example1_ref 15020 . C A . PASS DP=951;SS=0;SSC=0;GPV=1E0;SPV=5.2585E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:655:654:1:0.15%:337,317,0,1 0/0:.:296:295:1:0.34%:156,139,0,1 -Example1_ref 15021 . C . PASS DP=959;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:662:662:0:0%:337,325,0,0 0/0:.:297:297:0:0%:158,139,0,0 -Example1_ref 15022 . T . PASS DP=973;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:666:0:0%:338,328,0,0 0/0:.:307:307:0:0%:162,145,0,0 -Example1_ref 15023 . G . PASS DP=968;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:666:0:0%:341,325,0,0 0/0:.:302:302:0:0%:155,147,0,0 -Example1_ref 15024 . ATG A . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=6.9488E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:664:1:0.15%:332,332,0,1 0/0:.:292:292:0:0%:145,147,0,0 -Example1_ref 15025 . T . PASS DP=970;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:670:0:0%:336,334,0,0 0/0:.:299:299:0:0%:150,149,0,0 -Example1_ref 15026 . G . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:660:0:0%:327,333,0,0 0/0:.:297:297:0:0%:150,147,0,0 -Example1_ref 15027 . A . PASS DP=967;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:665:665:0:0%:330,335,0,0 0/0:.:302:302:0:0%:153,149,0,0 -Example1_ref 15028 . A . PASS DP=959;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:325,336,0,0 0/0:.:298:298:0:0%:149,149,0,0 -Example1_ref 15029 . A . PASS DP=967;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:667:0:0%:328,339,0,0 0/0:.:300:300:0:0%:151,149,0,0 -Example1_ref 15030 . A . PASS DP=950;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:652:652:0:0%:318,334,0,0 0/0:.:298:298:0:0%:148,150,0,0 -Example1_ref 15031 . A . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:324,337,0,0 0/0:.:297:297:0:0%:147,150,0,0 -Example1_ref 15032 . T . PASS DP=946;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:655:655:0:0%:326,329,0,0 0/0:.:291:291:0:0%:147,144,0,0 -Example1_ref 15033 . T G . PASS DP=958;SS=0;SSC=0;GPV=1E0;SPV=6.9311E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:664:663:1:0.15%:324,339,1,0 0/0:.:294:294:0:0%:149,145,0,0 -Example1_ref 15034 . T G . PASS DP=957;SS=0;SSC=0;GPV=1E0;SPV=5.2071E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:663:661:1:0.15%:329,332,0,1 0/0:.:294:293:1:0.34%:146,147,0,1 -Example1_ref 15035 . G . PASS DP=966;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:667:667:0:0%:320,347,0,0 0/0:.:299:299:0:0%:146,153,0,0 -Example1_ref 15036 . A . PASS DP=979;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:677:677:0:0%:328,349,0,0 0/0:.:302:302:0:0%:147,155,0,0 -Example1_ref 15037 . A . PASS DP=997;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:691:691:0:0%:336,355,0,0 0/0:.:306:306:0:0%:151,155,0,0 -Example1_ref 15038 . C T . PASS DP=999;SS=0;SSC=0;GPV=1E0;SPV=5.222E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:691:689:1:0.14%:337,352,1,0 0/0:.:308:307:1:0.32%:152,155,0,1 -Example1_ref 15039 . A . PASS DP=1000;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:693:693:0:0%:346,347,0,0 0/0:.:307:307:0:0%:155,152,0,0 -Example1_ref 15040 . T . PASS DP=1009;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:700:700:0:0%:346,354,0,0 0/0:.:309:309:0:0%:155,154,0,0 -Example1_ref 15041 . A T . PASS DP=1013;SS=0;SSC=0;GPV=1E0;SPV=5.1723E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:704:703:1:0.14%:348,355,0,1 0/0:.:309:308:1:0.32%:151,157,0,1 -Example1_ref 15042 . G A . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=6.994E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:697:1:0.14%:335,362,1,0 0/0:.:300:300:0:0%:144,156,0,0 -Example1_ref 15043 . A G . PASS DP=1009;SS=0;SSC=0;GPV=1E0;SPV=6.9673E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:702:1:0.14%:345,357,0,1 0/0:.:306:306:0:0%:153,153,0,0 -Example1_ref 15044 . GC G . PASS DP=1015;SS=0;SSC=0;GPV=1E0;SPV=9.3071E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:705:0:0%:342,363,0,0 0/0:.:310:308:2:0.65%:154,154,0,2 -Example1_ref 15045 . C G . PASS DP=1026;SS=0;SSC=0;GPV=1E0;SPV=6.9531E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:712:711:1:0.14%:347,364,0,1 0/0:.:314:312:0:0%:157,155,0,0 -Example1_ref 15046 . A AC . PASS DP=1055;SS=0;SSC=0;GPV=1E0;SPV=6.9194E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:730:729:1:0.14%:348,381,1,0 0/0:.:325:325:0:0%:159,166,0,0 -Example1_ref 15047 . C . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:728:727:0:0%:348,379,0,0 0/0:.:318:318:0:0%:157,161,0,0 -Example1_ref 15048 . A AT . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=6.6468E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:727:725:2:0.28%:347,378,0,2 0/0:.:319:318:1:0.31%:158,160,0,1 -Example1_ref 15049 . GA G . PASS DP=1053;SS=0;SSC=0;GPV=1E0;SPV=3.0798E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:728:728:0:0%:354,374,0,0 0/0:.:325:323:1:0.31%:161,162,0,1 -Example1_ref 15050 . A ACCTTT . PASS DP=1060;SS=0;SSC=0;GPV=1E0;SPV=7.0132E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:742:741:1:0.13%:358,383,1,0 0/0:.:318:316:0:0%:154,162,0,0 -Example1_ref 15051 . C T . PASS DP=1060;SS=0;SSC=0;GPV=1E0;SPV=2.9934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:742:742:0:0%:367,375,0,0 0/0:.:318:316:1:0.32%:160,156,1,0 -Example1_ref 15052 . T A . PASS DP=1035;SS=0;SSC=0;GPV=1E0;SPV=6.9826E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:722:721:1:0.14%:358,363,0,1 0/0:.:313:312:0:0%:156,156,0,0 -Example1_ref 15053 . G T . PASS DP=1022;SS=0;SSC=0;GPV=1E0;SPV=6.8885E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:704:703:1:0.14%:348,355,1,0 0/0:.:318:318:0:0%:160,158,0,0 -Example1_ref 15054 . G T . PASS DP=1008;SS=0;SSC=0;GPV=1E0;SPV=4.8438E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:702:699:2:0.29%:346,353,2,0 0/0:.:306:306:0:0%:151,155,0,0 -Example1_ref 15055 . G T . PASS DP=1033;SS=0;SSC=0;GPV=1E0;SPV=5.1709E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:718:717:1:0.14%:351,366,0,1 0/0:.:315:314:1:0.32%:153,161,1,0 -Example1_ref 15056 . T C . PASS DP=1037;SS=0;SSC=0;GPV=1E0;SPV=6.9431E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:720:719:1:0.14%:357,362,1,0 0/0:.:317:317:0:0%:162,155,0,0 -Example1_ref 15057 . A . PASS DP=1018;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:701:0:0%:336,365,0,0 0/0:.:317:317:0:0%:156,161,0,0 -Example1_ref 15058 . T . PASS DP=979;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:674:674:0:0%:331,343,0,0 0/0:.:305:305:0:0%:155,150,0,0 -Example1_ref 15059 . GT G . PASS DP=985;SS=0;SSC=0;GPV=1E0;SPV=6.8934E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:679:678:1:0.15%:334,344,0,1 0/0:.:306:306:0:0%:154,152,0,0 -Example1_ref 15060 . T TGTATAAGAGACAG . PASS DP=979;SS=0;SSC=0;GPV=1E0;SPV=6.8609E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:672:670:1:0.15%:334,336,0,1 0/0:.:307:307:0:0%:155,152,0,0 -Example1_ref 15061 . G T . PASS DP=978;SS=0;SSC=0;GPV=1E0;SPV=6.8098E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:666:665:1:0.15%:330,335,1,0 0/0:.:312:312:0:0%:162,150,0,0 -Example1_ref 15062 . T . PASS DP=992;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:677:677:0:0%:351,326,0,0 0/0:.:315:315:0:0%:169,146,0,0 -Example1_ref 15063 . C A . PASS DP=981;SS=0;SSC=0;GPV=1E0;SPV=3.1531E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:671:0:0%:345,326,0,0 0/0:.:310:308:1:0.32%:163,145,0,1 -Example1_ref 15064 . A G . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=3.1301E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:676:676:0:0%:344,332,0,0 0/0:.:308:307:1:0.32%:158,149,1,0 -Example1_ref 15065 . T . PASS DP=979;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:670:670:0:0%:344,326,0,0 0/0:.:309:309:0:0%:164,145,0,0 -Example1_ref 15066 . TA T . PASS DP=990;SS=0;SSC=0;GPV=1E0;SPV=6.8485E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:678:677:1:0.15%:345,332,0,1 0/0:.:312:312:0:0%:163,149,0,0 -Example1_ref 15067 . A . PASS DP=1013;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:697:696:0:0%:357,339,0,0 0/0:.:316:316:0:0%:168,148,0,0 -Example1_ref 15068 . G GC . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=5.2248E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:704:1:0.14%:361,343,0,1 0/0:.:315:314:1:0.32%:167,147,1,0 -Example1_ref 15069 . C . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:691:0:0%:355,336,0,0 0/0:.:304:304:0:0%:163,141,0,0 -Example1_ref 15070 . T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:696:0:0%:361,335,0,0 0/0:.:306:306:0:0%:165,141,0,0 -Example1_ref 15071 . G A . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=3.0622E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:691:691:0:0%:355,336,0,0 0/0:.:305:304:1:0.33%:163,141,0,1 -Example1_ref 15072 . A ACAG . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=4.827E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:695:2:0.29%:357,338,0,2 0/0:.:306:306:0:0%:163,143,0,0 -Example1_ref 15073 . T C . PASS DP=1021;SS=0;SSC=0;GPV=1E0;SPV=6.9118E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:706:704:1:0.14%:364,340,1,0 0/0:.:315:315:0:0%:170,145,0,0 -Example1_ref 15074 . A . PASS DP=1017;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:703:0:0%:362,341,0,0 0/0:.:314:314:0:0%:169,145,0,0 -Example1_ref 15075 . C A . PASS DP=1001;SS=0;SSC=0;GPV=1E0;SPV=6.9469E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:693:1:0.14%:358,335,1,0 0/0:.:305:305:0:0%:165,140,0,0 -Example1_ref 15076 . T . PASS DP=998;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:692:0:0%:360,332,0,0 0/0:.:306:306:0:0%:165,141,0,0 -Example1_ref 15077 . G . PASS DP=1005;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:696:0:0%:368,328,0,0 0/0:.:309:309:0:0%:168,141,0,0 -Example1_ref 15078 . A . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:706:705:0:0%:362,343,0,0 0/0:.:306:306:0:0%:161,145,0,0 -Example1_ref 15079 . T . PASS DP=1001;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:701:0:0%:362,339,0,0 0/0:.:300:300:0:0%:162,138,0,0 -Example1_ref 15080 . T A . PASS DP=1003;SS=0;SSC=0;GPV=1E0;SPV=5.1174E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:700:1:0.14%:361,339,0,1 0/0:.:302:301:1:0.33%:162,139,0,1 -Example1_ref 15081 . T . PASS DP=1012;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:705:0:0%:364,341,0,0 0/0:.:307:307:0:0%:163,144,0,0 -Example1_ref 15082 . A T . PASS DP=1011;SS=0;SSC=0;GPV=1E0;SPV=6.9832E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:706:705:1:0.14%:362,343,1,0 0/0:.:305:305:0:0%:162,143,0,0 -Example1_ref 15083 . G . PASS DP=1005;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:703:0:0%:361,342,0,0 0/0:.:302:302:0:0%:160,142,0,0 -Example1_ref 15084 . A G . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=6.9223E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:695:694:1:0.14%:355,339,1,0 0/0:.:309:309:0:0%:162,147,0,0 -Example1_ref 15085 . A ACTGTC . PASS DP=1001;SS=0;SSC=0;GPV=1E0;SPV=5.2273E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:690:1:0.14%:353,337,1,0 0/0:.:309:308:1:0.32%:161,147,1,0 -Example1_ref 15086 . T . PASS DP=971;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:677:677:0:0%:358,319,0,0 0/0:.:294:294:0:0%:160,134,0,0 -Example1_ref 15087 . C . PASS DP=987;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:692:691:0:0%:361,330,0,0 0/0:.:295:294:0:0%:161,133,0,0 -Example1_ref 15088 . A . PASS DP=1003;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:700:700:0:0%:365,335,0,0 0/0:.:303:303:0:0%:162,141,0,0 -Example1_ref 15089 . T G . PASS DP=1005;SS=0;SSC=0;GPV=1E0;SPV=3.0448E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:699:699:0:0%:368,331,0,0 0/0:.:306:305:1:0.33%:167,138,0,1 -Example1_ref 15090 . T . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:698:0:0%:365,333,0,0 0/0:.:306:306:0:0%:165,141,0,0 -Example1_ref 15091 . A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:697:697:0:0%:364,333,0,0 0/0:.:307:307:0:0%:164,143,0,0 -Example1_ref 15092 . A C . PASS DP=1010;SS=0;SSC=0;GPV=1E0;SPV=5.2398E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:697:696:1:0.14%:363,333,1,0 0/0:.:313:312:1:0.32%:165,147,1,0 -Example1_ref 15093 . A G . PASS DP=1015;SS=0;SSC=0;GPV=1E0;SPV=3.0671E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:703:703:0:0%:367,336,0,0 0/0:.:312:310:1:0.32%:165,145,0,1 -Example1_ref 15094 . G GTCTC . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=3.047E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:696:0:0%:362,334,0,0 0/0:.:306:304:1:0.33%:159,145,1,0 -Example1_ref 15095 . T TC . PASS DP=1001;SS=0;SSC=0;GPV=1E0;SPV=2.6007E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:693:3:0.43%:359,334,3,0 0/0:.:303:299:3:0.99%:159,140,3,0 -Example1_ref 15096 . T C . PASS DP=987;SS=0;SSC=0;GPV=1E0;SPV=6.9215E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:682:678:1:0.15%:351,327,1,0 0/0:.:305:302:0:0%:161,141,0,0 -Example1_ref 15097 . A . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:647:647:0:0%:324,323,0,0 0/0:.:297:297:0:0%:154,143,0,0 -Example1_ref 15098 . T C . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=5.244E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:636:635:1:0.16%:311,324,1,0 0/0:.:286:285:1:0.35%:145,140,1,0 -Example1_ref 15099 . T . PASS DP=923;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:636:636:0:0%:308,328,0,0 0/0:.:287:287:0:0%:143,144,0,0 -Example1_ref 15100 . G . PASS DP=907;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:631:630:0:0%:301,329,0,0 0/0:.:276:276:0:0%:138,138,0,0 -Example1_ref 15101 . T A . PASS DP=914;SS=0;SSC=0;GPV=1E0;SPV=6.9037E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:631:630:1:0.16%:307,323,0,1 0/0:.:283:283:0:0%:141,142,0,0 -Example1_ref 15102 . C . PASS DP=889;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:619:619:0:0%:299,320,0,0 0/0:.:270:270:0:0%:131,139,0,0 -Example1_ref 15103 . G . PASS DP=883;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:611:611:0:0%:284,327,0,0 0/0:.:272:272:0:0%:127,145,0,0 -Example1_ref 15104 . A . PASS DP=884;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:614:614:0:0%:286,328,0,0 0/0:.:270:270:0:0%:128,142,0,0 -Example1_ref 15105 . A . PASS DP=883;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:610:610:0:0%:283,327,0,0 0/0:.:273:273:0:0%:129,144,0,0 -Example1_ref 15106 . A . PASS DP=893;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:622:622:0:0%:287,335,0,0 0/0:.:271:271:0:0%:132,139,0,0 -Example1_ref 15107 . A T . PASS DP=890;SS=0;SSC=0;GPV=1E0;SPV=3.0449E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:619:619:0:0%:286,333,0,0 0/0:.:271:270:1:0.37%:128,142,0,1 -Example1_ref 15108 . A . PASS DP=903;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:623:623:0:0%:289,334,0,0 0/0:.:280:280:0:0%:135,145,0,0 -Example1_ref 15109 . C A . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=3.0574E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:629:629:0:0%:296,333,0,0 0/0:.:277:276:1:0.36%:135,141,0,1 -Example1_ref 15110 . AT A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=6.9451E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:632:631:1:0.16%:296,335,1,0 0/0:.:278:278:0:0%:135,143,0,0 -Example1_ref 15111 . T . PASS DP=906;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:623:623:0:0%:290,333,0,0 0/0:.:283:283:0:0%:140,143,0,0 -Example1_ref 15112 . T C . PASS DP=908;SS=0;SSC=0;GPV=1E0;SPV=3.1057E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:626:626:0:0%:291,335,0,0 0/0:.:282:281:1:0.35%:137,144,1,0 -Example1_ref 15113 . A . PASS DP=922;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:633:633:0:0%:296,337,0,0 0/0:.:289:289:0:0%:144,145,0,0 -Example1_ref 15114 . T . PASS DP=927;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:641:641:0:0%:296,345,0,0 0/0:.:286:286:0:0%:142,144,0,0 -Example1_ref 15115 . T . PASS DP=917;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:632:632:0:0%:290,342,0,0 0/0:.:285:285:0:0%:137,148,0,0 -Example1_ref 15116 . A . PASS DP=927;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:639:639:0:0%:290,349,0,0 0/0:.:288:286:0:0%:138,148,0,0 -Example1_ref 15117 . A . PASS DP=925;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:638:638:0:0%:289,349,0,0 0/0:.:287:285:0:0%:132,153,0,0 -Example1_ref 15118 . G . PASS DP=942;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:646:645:0:0%:300,345,0,0 0/0:.:296:296:0:0%:146,150,0,0 -Example1_ref 15119 . A ACAG . PASS DP=965;SS=0;SSC=0;GPV=1E0;SPV=6.1368E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:660:655:4:0.61%:299,356,0,4 0/0:.:305:302:2:0.66%:145,157,0,2 -Example1_ref 15120 . A . PASS DP=980;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:661:661:0:0%:304,357,0,0 0/0:.:319:318:0:0%:155,163,0,0 -Example1_ref 15121 . T C . PASS DP=993;SS=0;SSC=0;GPV=1E0;SPV=4.5232E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:668:666:2:0.3%:313,353,2,0 0/0:.:325:325:0:0%:167,158,0,0 -Example1_ref 15122 . T . PASS DP=996;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:671:671:0:0%:309,362,0,0 0/0:.:325:325:0:0%:169,156,0,0 -Example1_ref 15123 . A . PASS DP=1015;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:682:682:0:0%:315,367,0,0 0/0:.:333:333:0:0%:171,162,0,0 -Example1_ref 15124 . CAG C . PASS DP=999;SS=0;SSC=0;GPV=1E0;SPV=5.4682E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:673:671:1:0.15%:309,362,0,1 0/0:.:326:325:1:0.31%:169,156,0,1 -Example1_ref 15125 . A . PASS DP=1014;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:685:685:0:0%:316,369,0,0 0/0:.:329:329:0:0%:168,161,0,0 -Example1_ref 15126 . GA G . PASS DP=1001;SS=0;SSC=0;GPV=1E0;SPV=8.6261E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:673:669:4:0.59%:302,367,0,4 0/0:.:328:326:1:0.31%:165,161,0,1 -Example1_ref 15127 . A . PASS DP=993;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:672:667:0:0%:307,360,0,0 0/0:.:321:316:0:0%:163,153,0,0 -Example1_ref 15128 . G . PASS DP=991;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:675:674:0:0%:306,368,0,0 0/0:.:316:310:0:0%:160,150,0,0 -Example1_ref 15129 . A AT . PASS DP=1013;SS=0;SSC=0;GPV=1E0;SPV=9.842E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:687:684:1:0.15%:319,365,0,1 0/0:.:326:318:3:0.93%:166,152,0,3 -Example1_ref 15130 . GT G . PASS DP=1044;SS=0;SSC=0;GPV=1E0;SPV=1.4216E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:699:5:0.71%:322,377,0,5 0/0:.:339:335:0:0%:172,163,0,0 -Example1_ref 15131 . T . PASS DP=1059;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:714:706:0:0%:331,375,0,0 0/0:.:345:340:0:0%:172,168,0,0 -Example1_ref 15132 . G T . PASS DP=1094;SS=0;SSC=0;GPV=1E0;SPV=6.7461E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:737:735:1:0.14%:348,387,1,0 0/0:.:357:355:0:0%:184,171,0,0 -Example1_ref 15133 . T G . PASS DP=1104;SS=0;SSC=0;GPV=1E0;SPV=3.2788E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:740:740:0:0%:354,386,0,0 0/0:.:364:360:1:0.28%:187,173,0,1 -Example1_ref 15134 . A . PASS DP=1117;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:748:748:0:0%:350,398,0,0 0/0:.:369:368:0:0%:186,182,0,0 -Example1_ref 15135 . T TA . PASS DP=1105;SS=0;SSC=0;GPV=1E0;SPV=2.4877E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:735:4:0.54%:347,388,0,4 0/0:.:366:358:4:1.1%:186,172,0,4 -Example1_ref 15136 . A AG . PASS DP=1099;SS=0;SSC=0;GPV=1E0;SPV=3.2575E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:741:741:0:0%:351,390,0,0 0/0:.:358:357:1:0.28%:182,175,1,0 -Example1_ref 15137 . G T . PASS DP=1087;SS=0;SSC=0;GPV=1E0;SPV=6.7311E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:732:730:1:0.14%:350,380,1,0 0/0:.:355:355:0:0%:184,171,0,0 -Example1_ref 15138 . G T . PASS DP=1059;SS=0;SSC=0;GPV=1E0;SPV=4.0678E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:715:713:1:0.14%:343,370,1,0 0/0:.:344:339:4:1.17%:178,161,3,1 -Example1_ref 15139 . G T . PASS DP=1075;SS=0;SSC=0;GPV=1E0;SPV=4.0741E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:714:2:0.28%:343,371,2,0 0/0:.:358:356:2:0.56%:185,171,2,0 -Example1_ref 15140 . T A . PASS DP=1071;SS=0;SSC=0;GPV=1E0;SPV=1.2485E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:712:712:0:0%:352,360,0,0 0/0:.:359:355:4:1.11%:196,159,0,4 -Example1_ref 15141 . C A . PASS DP=1038;SS=0;SSC=0;GPV=1E0;SPV=5.5706E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:690:688:1:0.15%:350,338,0,1 0/0:.:348:345:1:0.29%:194,151,0,1 -Example1_ref 15142 . A AG . PASS DP=1061;SS=0;SSC=0;GPV=1E0;SPV=4.3536E-3 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:702:702:0:0%:353,349,0,0 0/0:.:359:354:5:1.39%:192,162,0,5 -Example1_ref 15143 . A . PASS DP=1099;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:718:718:0:0%:361,357,0,0 0/0:.:381:381:0:0%:207,174,0,0 -Example1_ref 15144 . T . PASS DP=1103;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:719:719:0:0%:361,358,0,0 0/0:.:384:384:0:0%:209,175,0,0 -Example1_ref 15145 . A T . PASS DP=1105;SS=0;SSC=0;GPV=1E0;SPV=4.2672E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:722:720:2:0.28%:359,361,1,1 0/0:.:383:383:0:0%:209,174,0,0 -Example1_ref 15146 . T C . PASS DP=1101;SS=0;SSC=0;GPV=1E0;SPV=6.5577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:722:721:1:0.14%:366,355,1,0 0/0:.:379:379:0:0%:211,168,0,0 -Example1_ref 15147 . C . PASS DP=1090;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:710:710:0:0%:368,342,0,0 0/0:.:380:380:0:0%:209,171,0,0 -Example1_ref 15148 . A T . PASS DP=1111;SS=0;SSC=0;GPV=1E0;SPV=6.4896E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:721:720:1:0.14%:367,353,1,0 0/0:.:390:390:0:0%:216,174,0,0 -Example1_ref 15149 . T . PASS DP=1120;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:729:729:0:0%:372,357,0,0 0/0:.:391:391:0:0%:216,175,0,0 -Example1_ref 15150 . A G . PASS DP=1103;SS=0;SSC=0;GPV=1E0;SPV=6.4733E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:714:713:1:0.14%:361,352,1,0 0/0:.:389:389:0:0%:213,176,0,0 -Example1_ref 15151 . T A . PASS DP=1101;SS=0;SSC=0;GPV=1E0;SPV=5.7611E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:716:1:0.14%:365,351,1,0 0/0:.:384:383:1:0.26%:214,169,1,0 -Example1_ref 15152 . T C . PASS DP=1081;SS=0;SSC=0;GPV=1E0;SPV=6.4847E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:701:700:1:0.14%:362,338,1,0 0/0:.:380:380:0:0%:214,166,0,0 -Example1_ref 15153 . G T . PASS DP=1068;SS=0;SSC=0;GPV=1E0;SPV=5.7552E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:696:695:1:0.14%:359,336,0,1 0/0:.:372:371:1:0.27%:210,161,0,1 -Example1_ref 15154 . G T . PASS DP=1082;SS=0;SSC=0;GPV=1E0;SPV=5.7567E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:705:704:1:0.14%:350,354,1,0 0/0:.:377:376:1:0.27%:206,170,1,0 -Example1_ref 15155 . T . PASS DP=1102;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:727:727:0:0%:366,361,0,0 0/0:.:375:375:0:0%:211,164,0,0 -Example1_ref 15156 . T A . PASS DP=1095;SS=0;SSC=0;GPV=1E0;SPV=3.3973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:723:723:0:0%:358,365,0,0 0/0:.:372:371:1:0.27%:205,166,0,1 -Example1_ref 15157 . T . PASS DP=1095;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:717:0:0%:360,357,0,0 0/0:.:378:378:0:0%:210,168,0,0 -Example1_ref 15158 . CT C . PASS DP=1088;SS=0;SSC=0;GPV=1E0;SPV=6.5901E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:716:1:0.14%:363,353,0,1 0/0:.:371:371:0:0%:206,165,0,0 -Example1_ref 15159 . T . PASS DP=1112;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:729:728:0:0%:364,364,0,0 0/0:.:383:383:0:0%:211,172,0,0 -Example1_ref 15160 . A . PASS DP=1125;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:740:740:0:0%:368,372,0,0 0/0:.:385:385:0:0%:209,176,0,0 -Example1_ref 15161 . A . PASS DP=1119;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:737:737:0:0%:363,374,0,0 0/0:.:382:382:0:0%:208,174,0,0 -Example1_ref 15162 . C A . PASS DP=1092;SS=0;SSC=0;GPV=1E0;SPV=1.1816E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:719:718:1:0.14%:364,354,0,1 0/0:.:373:370:3:0.8%:208,162,0,3 -Example1_ref 15163 . C A . PASS DP=1110;SS=0;SSC=0;GPV=1E0;SPV=6.5856E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:731:730:1:0.14%:360,370,0,1 0/0:.:379:379:0:0%:209,170,0,0 -Example1_ref 15164 . A . PASS DP=1121;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:367,372,0,0 0/0:.:382:382:0:0%:209,173,0,0 -Example1_ref 15165 . A . PASS DP=1124;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:362,377,0,0 0/0:.:385:385:0:0%:208,177,0,0 -Example1_ref 15166 . A . PASS DP=1122;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:363,376,0,0 0/0:.:383:383:0:0%:208,175,0,0 -Example1_ref 15167 . G . PASS DP=1115;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:733:733:0:0%:356,377,0,0 0/0:.:382:382:0:0%:206,176,0,0 -Example1_ref 15168 . A T . PASS DP=1115;SS=0;SSC=0;GPV=1E0;SPV=6.583E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:734:733:1:0.14%:357,376,0,1 0/0:.:381:381:0:0%:206,175,0,0 -Example1_ref 15169 . A G . PASS DP=1127;SS=0;SSC=0;GPV=1E0;SPV=6.6016E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:744:743:1:0.13%:364,379,0,1 0/0:.:383:383:0:0%:204,179,0,0 -Example1_ref 15170 . A G . PASS DP=1129;SS=0;SSC=0;GPV=1E0;SPV=3.422E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:743:742:0:0%:366,376,0,0 0/0:.:386:385:1:0.26%:208,177,0,1 -Example1_ref 15171 . T G . PASS DP=1121;SS=0;SSC=0;GPV=1E0;SPV=6.5923E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:738:1:0.14%:364,374,1,0 0/0:.:382:382:0:0%:208,174,0,0 -Example1_ref 15172 . T . PASS DP=1140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:752:752:0:0%:368,384,0,0 0/0:.:388:388:0:0%:210,178,0,0 -Example1_ref 15173 . A G . PASS DP=1144;SS=0;SSC=0;GPV=1E0;SPV=6.5997E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:755:754:1:0.13%:369,385,0,1 0/0:.:389:389:0:0%:207,182,0,0 -Example1_ref 15174 . A T . PASS DP=1140;SS=0;SSC=0;GPV=1E0;SPV=6.5877E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:751:750:1:0.13%:362,388,0,1 0/0:.:389:389:0:0%:206,183,0,0 -Example1_ref 15175 . A . PASS DP=1133;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:751:751:0:0%:366,385,0,0 0/0:.:382:382:0:0%:206,176,0,0 -Example1_ref 15176 . A C . PASS DP=1128;SS=0;SSC=0;GPV=1E0;SPV=6.5453E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:738:736:1:0.14%:349,387,1,0 0/0:.:390:389:0:0%:206,183,0,0 -Example1_ref 15177 . T . PASS DP=1140;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:748:748:0:0%:362,386,0,0 0/0:.:392:392:0:0%:207,185,0,0 -Example1_ref 15178 . A ACCTGTCT . PASS DP=1141;SS=0;SSC=0;GPV=1E0;SPV=6.5294E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:745:744:1:0.13%:359,385,1,0 0/0:.:396:396:0:0%:207,189,0,0 -Example1_ref 15179 . C A . PASS DP=1117;SS=0;SSC=0;GPV=1E0;SPV=3.4736E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:729:729:0:0%:353,376,0,0 0/0:.:388:387:1:0.26%:208,179,0,1 -Example1_ref 15180 . T C . PASS DP=1126;SS=0;SSC=0;GPV=1E0;SPV=6.5187E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:734:733:1:0.14%:354,379,0,1 0/0:.:392:392:0:0%:209,183,0,0 -Example1_ref 15181 . T . PASS DP=1134;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:739:739:0:0%:356,383,0,0 0/0:.:395:395:0:0%:207,188,0,0 -Example1_ref 15182 . A . PASS DP=1136;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:741:741:0:0%:358,383,0,0 0/0:.:395:395:0:0%:206,189,0,0 -Example1_ref 15183 . T . PASS DP=1143;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:748:748:0:0%:359,389,0,0 0/0:.:395:395:0:0%:209,186,0,0 -Example1_ref 15184 . G A . PASS DP=1152;SS=0;SSC=0;GPV=1E0;SPV=5.7067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:755:754:1:0.13%:356,398,1,0 0/0:.:397:396:1:0.25%:208,188,0,1 -Example1_ref 15185 . A . PASS DP=1163;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:757:757:0:0%:360,397,0,0 0/0:.:406:406:0:0%:207,199,0,0 -Example1_ref 15186 . A . PASS DP=1174;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:765:765:0:0%:352,413,0,0 0/0:.:409:409:0:0%:208,201,0,0 -Example1_ref 15187 . A G . PASS DP=1176;SS=0;SSC=0;GPV=1E0;SPV=3.5119E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:763:763:0:0%:346,417,0,0 0/0:.:413:412:1:0.24%:207,205,0,1 -Example1_ref 15188 . T . PASS DP=1203;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:784:784:0:0%:356,428,0,0 0/0:.:419:419:0:0%:211,208,0,0 -Example1_ref 15189 . TG T . PASS DP=1219;SS=0;SSC=0;GPV=1E0;SPV=3.5193E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:790:790:0:0%:348,442,0,0 0/0:.:429:428:1:0.23%:210,218,0,1 -Example1_ref 15190 . G . PASS DP=1222;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:788:785:0:0%:340,445,0,0 0/0:.:434:431:0:0%:211,220,0,0 -Example1_ref 15191 . A . PASS DP=1223;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:792:792:0:0%:342,450,0,0 0/0:.:431:431:0:0%:205,226,0,0 -Example1_ref 15192 . T A . PASS DP=1257;SS=0;SSC=0;GPV=1E0;SPV=5.8392E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:811:810:1:0.12%:346,464,0,1 0/0:.:446:445:1:0.22%:206,239,0,1 -Example1_ref 15193 . T . PASS DP=1309;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:841:0:0%:347,494,0,0 0/0:.:468:468:0:0%:209,259,0,0 -Example1_ref 15194 . G . PASS DP=1294;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:833:833:0:0%:338,495,0,0 0/0:.:461:460:0:0%:207,253,0,0 -Example1_ref 15195 . G T . PASS DP=1294;SS=0;SSC=0;GPV=1E0;SPV=6.3756E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:825:824:1:0.12%:325,499,1,0 0/0:.:469:469:0:0%:203,266,0,0 -Example1_ref 15196 . T A . PASS DP=1293;SS=0;SSC=0;GPV=1E0;SPV=6.3517E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:822:819:1:0.12%:336,483,0,1 0/0:.:471:471:0:0%:209,262,0,0 -Example1_ref 15197 . G . PASS DP=1264;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:800:800:0:0%:317,483,0,0 0/0:.:464:464:0:0%:205,259,0,0 -Example1_ref 15198 . G T . PASS DP=1292;SS=0;SSC=0;GPV=1E0;SPV=7.3938E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:826:823:2:0.24%:327,496,0,2 0/0:.:466:465:1:0.21%:199,266,1,0 -Example1_ref 15199 . T TATAAGAGACA . PASS DP=1315;SS=0;SSC=0;GPV=1E0;SPV=5.9151E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:839:1:0.12%:342,497,0,1 0/0:.:474:473:1:0.21%:211,262,0,1 -Example1_ref 15200 . G T . PASS DP=1285;SS=0;SSC=0;GPV=1E0;SPV=6.3891E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:821:820:1:0.12%:327,493,1,0 0/0:.:464:464:0:0%:204,260,0,0 -Example1_ref 15201 . C . PASS DP=1277;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:816:816:0:0%:334,482,0,0 0/0:.:461:461:0:0%:206,255,0,0 -Example1_ref 15202 . T A . PASS DP=1314;SS=0;SSC=0;GPV=1E0;SPV=3.6101E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:839:839:0:0%:340,499,0,0 0/0:.:475:473:1:0.21%:207,266,1,0 -Example1_ref 15203 . A G . PASS DP=1329;SS=0;SSC=0;GPV=1E0;SPV=6.3732E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:847:846:1:0.12%:341,505,1,0 0/0:.:482:482:0:0%:210,272,0,0 -Example1_ref 15204 . A C . PASS DP=1308;SS=0;SSC=0;GPV=1E0;SPV=5.881E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:839:838:1:0.12%:340,498,1,0 0/0:.:469:467:1:0.21%:195,272,1,0 -Example1_ref 15205 . A . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:853:0:0%:349,504,0,0 0/0:.:488:488:0:0%:211,277,0,0 -Example1_ref 15206 . T . PASS DP=1328;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:846:0:0%:349,497,0,0 0/0:.:482:482:0:0%:214,268,0,0 -Example1_ref 15207 . T C . PASS DP=1318;SS=0;SSC=0;GPV=1E0;SPV=3.6646E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:835:835:0:0%:341,494,0,0 0/0:.:483:482:1:0.21%:208,274,0,1 -Example1_ref 15208 . A . PASS DP=1337;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:850:0:0%:351,499,0,0 0/0:.:487:487:0:0%:208,279,0,0 -Example1_ref 15209 . C A . PASS DP=1312;SS=0;SSC=0;GPV=1E0;SPV=6.311E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:828:827:1:0.12%:351,476,0,1 0/0:.:484:484:0:0%:212,272,0,0 -Example1_ref 15210 . T . PASS DP=1335;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:846:0:0%:352,494,0,0 0/0:.:489:489:0:0%:211,278,0,0 -Example1_ref 15211 . A . PASS DP=1342;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:849:849:0:0%:353,496,0,0 0/0:.:493:493:0:0%:211,282,0,0 -Example1_ref 15212 . G A . PASS DP=1312;SS=0;SSC=0;GPV=1E0;SPV=6.3415E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:832:831:1:0.12%:347,484,0,1 0/0:.:480:480:0:0%:209,271,0,0 -Example1_ref 15213 . G T . PASS DP=1307;SS=0;SSC=0;GPV=1E0;SPV=5.9495E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:832:831:1:0.12%:336,495,1,0 0/0:.:475:474:1:0.21%:200,274,1,0 -Example1_ref 15214 . A . PASS DP=1307;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:827:827:0:0%:338,489,0,0 0/0:.:480:480:0:0%:206,274,0,0 -Example1_ref 15215 . A C . PASS DP=1319;SS=0;SSC=0;GPV=1E0;SPV=6.3306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:835:834:1:0.12%:342,492,1,0 0/0:.:484:484:0:0%:209,275,0,0 -Example1_ref 15216 . T A . PASS DP=1365;SS=0;SSC=0;GPV=1E0;SPV=6.3123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:862:860:1:0.12%:356,504,0,1 0/0:.:503:503:0:0%:213,290,0,0 -Example1_ref 15217 . T . PASS DP=1343;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:836:836:0:0%:352,484,0,0 0/0:.:507:507:0:0%:217,290,0,0 -Example1_ref 15218 . C A . PASS DP=1353;SS=0;SSC=0;GPV=1E0;SPV=3.8976E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:841:2:0.24%:348,493,0,2 0/0:.:508:507:0:0%:215,292,0,0 -Example1_ref 15219 . C G . PASS DP=1354;SS=0;SSC=0;GPV=1E0;SPV=6.2306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:844:842:1:0.12%:337,505,0,1 0/0:.:510:510:0:0%:213,297,0,0 -Example1_ref 15220 . T . PASS DP=1392;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:871:871:0:0%:349,522,0,0 0/0:.:521:521:0:0%:215,306,0,0 -Example1_ref 15221 . A G . PASS DP=1404;SS=0;SSC=0;GPV=1E0;SPV=3.7705E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:874:874:0:0%:352,522,0,0 0/0:.:530:528:1:0.19%:215,313,0,1 -Example1_ref 15222 . A G . PASS DP=1394;SS=0;SSC=0;GPV=1E0;SPV=6.2123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:866:865:1:0.12%:338,527,1,0 0/0:.:528:528:0:0%:213,315,0,0 -Example1_ref 15223 . A . PASS DP=1414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:881:881:0:0%:351,530,0,0 0/0:.:533:533:0:0%:214,319,0,0 -Example1_ref 15224 . C A . PASS DP=1384;SS=0;SSC=0;GPV=1E0;SPV=7.5681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:865:861:2:0.23%:344,517,2,0 0/0:.:519:518:1:0.19%:214,304,0,1 -Example1_ref 15225 . A G . PASS DP=1410;SS=0;SSC=0;GPV=1E0;SPV=6.2074E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:875:873:1:0.11%:343,530,0,1 0/0:.:535:534:0:0%:216,318,0,0 -Example1_ref 15226 . A . PASS DP=1477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:913:913:0:0%:342,571,0,0 0/0:.:564:564:0:0%:213,351,0,0 -Example1_ref 15227 . T . PASS DP=1463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:899:899:0:0%:339,560,0,0 0/0:.:564:564:0:0%:212,352,0,0 -Example1_ref 15228 . A . PASS DP=1487;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:915:915:0:0%:341,574,0,0 0/0:.:572:572:0:0%:214,358,0,0 -Example1_ref 15229 . TA T . PASS DP=1470;SS=0;SSC=0;GPV=1E0;SPV=6.1224E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:900:899:1:0.11%:332,567,0,1 0/0:.:570:570:0:0%:215,355,0,0 -Example1_ref 15230 . A G . PASS DP=1479;SS=0;SSC=0;GPV=1E0;SPV=6.1502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:910:908:1:0.11%:335,573,1,0 0/0:.:569:569:0:0%:213,356,0,0 -Example1_ref 15231 . A . PASS DP=1478;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:904:904:0:0%:325,579,0,0 0/0:.:574:574:0:0%:213,361,0,0 -Example1_ref 15232 . A . PASS DP=1461;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:893:893:0:0%:320,573,0,0 0/0:.:568:568:0:0%:206,362,0,0 -Example1_ref 15233 . G . PASS DP=1443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:886:886:0:0%:314,572,0,0 0/0:.:557:557:0:0%:200,357,0,0 -Example1_ref 15234 . A G . PASS DP=1414;SS=0;SSC=0;GPV=1E0;SPV=6.0863E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:860:859:1:0.12%:303,556,0,1 0/0:.:554:553:0:0%:200,353,0,0 -Example1_ref 15235 . A T . PASS DP=1428;SS=0;SSC=0;GPV=1E0;SPV=6.2932E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:870:868:1:0.12%:313,555,1,0 0/0:.:558:557:1:0.18%:204,353,0,1 -Example1_ref 15236 . C A . PASS DP=1356;SS=0;SSC=0;GPV=1E0;SPV=9.4927E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:826:821:5:0.61%:307,514,0,5 0/0:.:530:529:1:0.19%:202,327,0,1 -Example1_ref 15237 . C A . PASS DP=1362;SS=0;SSC=0;GPV=1E0;SPV=7.7596E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:828:825:2:0.24%:298,527,0,2 0/0:.:534:533:1:0.19%:193,340,0,1 -Example1_ref 15238 . C A . PASS DP=1396;SS=0;SSC=0;GPV=1E0;SPV=6.289E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:849:1:0.12%:304,545,0,1 0/0:.:546:544:1:0.18%:194,350,0,1 -Example1_ref 15239 . G A . PASS DP=1408;SS=0;SSC=0;GPV=1E0;SPV=6.0795E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:856:855:1:0.12%:297,558,1,0 0/0:.:552:552:0:0%:195,357,0,0 -Example1_ref 15240 . A . PASS DP=1413;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:855:855:0:0%:296,559,0,0 0/0:.:558:558:0:0%:196,362,0,0 -Example1_ref 15241 . A . PASS DP=1417;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:862:862:0:0%:300,562,0,0 0/0:.:555:555:0:0%:196,359,0,0 -Example1_ref 15242 . GAA G . PASS DP=1385;SS=0;SSC=0;GPV=1E0;SPV=6.274E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:844:1:0.12%:288,556,1,0 0/0:.:539:538:1:0.19%:186,352,1,0 -Example1_ref 15243 . A C . PASS DP=1413;SS=0;SSC=0;GPV=1E0;SPV=3.9448E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:855:855:0:0%:293,562,0,0 0/0:.:558:556:1:0.18%:192,364,0,1 -Example1_ref 15244 . A . PASS DP=1407;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:851:0:0%:291,560,0,0 0/0:.:556:555:0:0%:194,361,0,0 -Example1_ref 15245 . C A . PASS DP=1420;SS=0;SSC=0;GPV=1E0;SPV=6.0113E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:853:852:1:0.12%:290,562,0,1 0/0:.:567:566:0:0%:197,369,0,0 -Example1_ref 15246 . A . PASS DP=1424;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:858:858:0:0%:293,565,0,0 0/0:.:566:565:0:0%:197,368,0,0 -Example1_ref 15247 . G A . PASS DP=1418;SS=0;SSC=0;GPV=1E0;SPV=3.9548E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:856:0:0%:289,567,0,0 0/0:.:561:559:1:0.18%:192,367,0,1 -Example1_ref 15248 . T . PASS DP=1431;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:857:0:0%:291,566,0,0 0/0:.:574:574:0:0%:195,379,0,0 -Example1_ref 15249 . T . PASS DP=1429;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:861:861:0:0%:290,571,0,0 0/0:.:568:568:0:0%:195,373,0,0 -Example1_ref 15250 . A C . PASS DP=1495;SS=0;SSC=0;GPV=1E0;SPV=4.0067E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:896:896:0:0%:294,602,0,0 0/0:.:599:598:1:0.17%:194,404,1,0 -Example1_ref 15251 . C A . PASS DP=1454;SS=0;SSC=0;GPV=1E0;SPV=5.9463E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:864:863:1:0.12%:282,581,0,1 0/0:.:590:589:0:0%:188,401,0,0 -Example1_ref 15252 . T . PASS DP=1465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:876:874:0:0%:284,590,0,0 0/0:.:589:589:0:0%:187,402,0,0 -Example1_ref 15253 . A . PASS DP=1483;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:883:883:0:0%:277,606,0,0 0/0:.:600:600:0:0%:189,411,0,0 -Example1_ref 15254 . GAACA G . PASS DP=1469;SS=0;SSC=0;GPV=1E0;SPV=7.8238E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:884:882:2:0.23%:273,609,2,0 0/0:.:585:584:1:0.17%:178,406,1,0 -Example1_ref 15255 . A . PASS DP=1465;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:877:877:0:0%:274,603,0,0 0/0:.:588:588:0:0%:180,408,0,0 -Example1_ref 15256 . A . PASS DP=1475;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:877:876:0:0%:280,596,0,0 0/0:.:598:598:0:0%:184,414,0,0 -Example1_ref 15257 . C . PASS DP=1432;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:853:0:0%:257,596,0,0 0/0:.:578:578:0:0%:174,404,0,0 -Example1_ref 15258 . A G . PASS DP=1438;SS=0;SSC=0;GPV=1E0;SPV=5.9123E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:848:1:0.12%:255,593,0,1 0/0:.:587:587:0:0%:179,408,0,0 -Example1_ref 15259 . C A . PASS DP=1449;SS=0;SSC=0;GPV=1E0;SPV=5.8702E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:849:1:0.12%:258,591,0,1 0/0:.:598:598:0:0%:181,417,0,0 -Example1_ref 15260 . T . PASS DP=1463;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:862:862:0:0%:262,600,0,0 0/0:.:601:601:0:0%:177,424,0,0 -Example1_ref 15261 . A . PASS DP=1482;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:869:869:0:0%:257,612,0,0 0/0:.:613:613:0:0%:180,433,0,0 -Example1_ref 15262 . C A . PASS DP=1456;SS=0;SSC=0;GPV=1E0;SPV=6.5324E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:858:856:1:0.12%:252,604,0,1 0/0:.:598:597:1:0.17%:175,422,1,0 -Example1_ref 15263 . A . PASS DP=1477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:867:866:0:0%:257,609,0,0 0/0:.:610:610:0:0%:176,434,0,0 -Example1_ref 15264 . A AT . PASS DP=1461;SS=0;SSC=0;GPV=1E0;SPV=5.8385E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:853:852:1:0.12%:247,605,0,1 0/0:.:608:608:0:0%:177,431,0,0 -Example1_ref 15265 . T C . PASS DP=1432;SS=0;SSC=0;GPV=1E0;SPV=5.863E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:840:838:1:0.12%:250,588,1,0 0/0:.:592:592:0:0%:175,417,0,0 -Example1_ref 15266 . C A . PASS DP=1428;SS=0;SSC=0;GPV=1E0;SPV=8.0625E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:828:823:2:0.24%:234,589,0,2 0/0:.:600:599:1:0.17%:173,426,0,1 -Example1_ref 15267 . A . PASS DP=1443;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:840:839:0:0%:238,601,0,0 0/0:.:603:603:0:0%:174,429,0,0 -Example1_ref 15268 . A G . PASS DP=1451;SS=0;SSC=0;GPV=1E0;SPV=5.8328E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:843:1:0.12%:241,602,0,1 0/0:.:606:603:0:0%:172,431,0,0 -Example1_ref 15269 . C A . PASS DP=1440;SS=0;SSC=0;GPV=1E0;SPV=5.8542E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:843:842:1:0.12%:242,600,0,1 0/0:.:597:597:0:0%:167,430,0,0 -Example1_ref 15270 . ATG A . PASS DP=1459;SS=0;SSC=0;GPV=1E0;SPV=5.8173E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:846:1:0.12%:241,605,1,0 0/0:.:609:609:0:0%:172,437,0,0 -Example1_ref 15271 . T C . PASS DP=1460;SS=0;SSC=0;GPV=1E0;SPV=5.8396E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:853:851:1:0.12%:241,610,1,0 0/0:.:607:607:0:0%:171,436,0,0 -Example1_ref 15272 . G A . PASS DP=1435;SS=0;SSC=0;GPV=1E0;SPV=5.8577E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:839:1:0.12%:232,607,1,0 0/0:.:594:594:0:0%:164,430,0,0 -Example1_ref 15273 . A G . PASS DP=1449;SS=0;SSC=0;GPV=1E0;SPV=3.3991E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:843:2:0.24%:236,607,0,2 0/0:.:604:604:0:0%:168,436,0,0 -Example1_ref 15274 . T . PASS DP=1449;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:841:0:0%:240,601,0,0 0/0:.:608:608:0:0%:172,436,0,0 -Example1_ref 15275 . G A . PASS DP=1443;SS=0;SSC=0;GPV=1E0;SPV=6.5678E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:846:844:1:0.12%:236,608,0,1 0/0:.:597:596:1:0.17%:165,431,1,0 -Example1_ref 15276 . A . PASS DP=1455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:847:847:0:0%:238,609,0,0 0/0:.:608:608:0:0%:165,443,0,0 -Example1_ref 15277 . A . PASS DP=1447;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:841:841:0:0%:229,612,0,0 0/0:.:606:606:0:0%:165,441,0,0 -Example1_ref 15278 . T . PASS DP=1414;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:819:818:0:0%:229,589,0,0 0/0:.:595:595:0:0%:164,431,0,0 -Example1_ref 15279 . T A . PASS DP=1450;SS=0;SSC=0;GPV=1E0;SPV=4.1684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:845:0:0%:234,611,0,0 0/0:.:605:603:1:0.17%:165,438,0,1 -Example1_ref 15280 . T . PASS DP=1459;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:842:842:0:0%:229,613,0,0 0/0:.:617:617:0:0%:165,452,0,0 -Example1_ref 15281 . G . PASS DP=1455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:845:0:0%:230,615,0,0 0/0:.:610:609:0:0%:161,448,0,0 -Example1_ref 15282 . A . PASS DP=1455;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:849:849:0:0%:231,618,0,0 0/0:.:606:606:0:0%:158,448,0,0 -Example1_ref 15283 . T . PASS DP=1436;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:839:839:0:0%:231,608,0,0 0/0:.:597:597:0:0%:159,438,0,0 -Example1_ref 15284 . A . PASS DP=1460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:849:849:0:0%:232,617,0,0 0/0:.:611:611:0:0%:159,452,0,0 -Example1_ref 15285 . T . PASS DP=1435;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:833:833:0:0%:231,602,0,0 0/0:.:602:602:0:0%:158,444,0,0 -Example1_ref 15286 . C A . PASS DP=1419;SS=0;SSC=0;GPV=1E0;SPV=4.1749E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:827:826:0:0%:228,598,0,0 0/0:.:592:591:1:0.17%:157,434,1,0 -Example1_ref 15287 . G . PASS DP=1444;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:837:836:0:0%:221,615,0,0 0/0:.:607:607:0:0%:154,453,0,0 -Example1_ref 15288 . A C . PASS DP=1473;SS=0;SSC=0;GPV=1E0;SPV=6.6167E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:856:1:0.12%:230,626,0,1 0/0:.:616:615:1:0.16%:159,456,0,1 -Example1_ref 15289 . T C . PASS DP=1450;SS=0;SSC=0;GPV=1E0;SPV=4.2207E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:838:838:0:0%:227,611,0,0 0/0:.:612:611:1:0.16%:161,450,0,1 -Example1_ref 15290 . T . PASS DP=1460;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:848:848:0:0%:227,621,0,0 0/0:.:612:612:0:0%:160,452,0,0 -Example1_ref 15291 . A . PASS DP=1467;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:852:852:0:0%:230,622,0,0 0/0:.:615:615:0:0%:158,457,0,0 -Example1_ref 15292 . A . PASS DP=1451;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:845:845:0:0%:228,617,0,0 0/0:.:606:606:0:0%:153,453,0,0 -Example1_ref 15293 . G A . PASS DP=1435;SS=0;SSC=0;GPV=1E0;SPV=6.5982E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:838:835:1:0.12%:221,614,0,1 0/0:.:597:596:1:0.17%:150,446,0,1 -Example1_ref 15294 . A . PASS DP=1476;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:859:859:0:0%:229,630,0,0 0/0:.:617:617:0:0%:157,460,0,0 -Example1_ref 15295 . C A . PASS DP=1455;SS=0;SSC=0;GPV=1E0;SPV=4.1747E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:847:847:0:0%:228,619,0,0 0/0:.:608:606:1:0.16%:156,450,0,1 -Example1_ref 15296 . A . PASS DP=1472;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:854:0:0%:230,624,0,0 0/0:.:618:618:0:0%:160,458,0,0 -Example1_ref 15297 . C CA . PASS DP=1464;SS=0;SSC=0;GPV=1E0;SPV=6.634E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:850:848:1:0.12%:222,626,0,1 0/0:.:614:613:1:0.16%:154,459,0,1 -Example1_ref 15298 . A . PASS DP=1477;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:857:857:0:0%:224,633,0,0 0/0:.:620:620:0:0%:156,464,0,0 -Example1_ref 15299 . A T . PASS DP=1472;SS=0;SSC=0;GPV=1E0;SPV=4.1984E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:854:0:0%:219,635,0,0 0/0:.:618:617:1:0.16%:152,465,0,1 -Example1_ref 15300 . A . PASS DP=1503;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:868:868:0:0%:215,653,0,0 0/0:.:635:635:0:0%:152,483,0,0 -Example1_ref 15301 . T . PASS DP=1486;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:865:864:0:0%:218,646,0,0 0/0:.:621:621:0:0%:149,472,0,0 -Example1_ref 15302 . A . PASS DP=1501;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:867:867:0:0%:218,649,0,0 0/0:.:634:634:0:0%:153,481,0,0 -Example1_ref 15303 . C A . PASS DP=1487;SS=0;SSC=0;GPV=1E0;SPV=3.3477E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:861:858:2:0.23%:210,648,1,1 0/0:.:626:626:0:0%:145,481,0,0 -Example1_ref 15304 . A . PASS DP=1488;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:854:854:0:0%:213,641,0,0 0/0:.:634:634:0:0%:151,483,0,0 -Example1_ref 15305 . A ACTG . PASS DP=1479;SS=0;SSC=0;GPV=1E0;SPV=4.2461E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:851:851:0:0%:209,642,0,0 0/0:.:628:627:1:0.16%:144,483,1,0 -Example1_ref 15306 . T . PASS DP=1458;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:834:834:0:0%:211,623,0,0 0/0:.:624:623:0:0%:145,478,0,0 -Example1_ref 15307 . A . PASS DP=1462;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:836:835:0:0%:205,630,0,0 0/0:.:626:624:0:0%:146,478,0,0 -Example1_ref 15308 . G T . PASS DP=1407;SS=0;SSC=0;GPV=1E0;SPV=6.7306E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:805:802:1:0.12%:177,625,1,0 0/0:.:602:600:1:0.17%:126,474,1,0 -Example1_ref 15309 . A G . PASS DP=1353;SS=0;SSC=0;GPV=1E0;SPV=5.6689E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:767:766:1:0.13%:178,588,0,1 0/0:.:586:586:0:0%:132,454,0,0 -Example1_ref 15310 . G A . PASS DP=1327;SS=0;SSC=0;GPV=1E0;SPV=4.2502E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:763:763:0:0%:168,595,0,0 0/0:.:564:563:1:0.18%:107,456,0,1 -Example1_ref 15311 . A C . PASS DP=1339;SS=0;SSC=0;GPV=1E0;SPV=8.0812E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:774:769:2:0.26%:170,599,2,0 0/0:.:565:564:1:0.18%:112,452,0,1 -Example1_ref 15312 . T . PASS DP=1282;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:741:740:0:0%:166,574,0,0 0/0:.:541:541:0:0%:106,435,0,0 -Example1_ref 15313 . A ACTG . PASS DP=1291;SS=0;SSC=0;GPV=1E0;SPV=8.1112E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:742:738:2:0.27%:162,576,2,0 0/0:.:549:548:1:0.18%:108,440,1,0 -Example1_ref 15314 . T G . PASS DP=1258;SS=0;SSC=0;GPV=1E0;SPV=5.779E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:727:726:1:0.14%:163,563,0,1 0/0:.:531:531:0:0%:107,424,0,0 -Example1_ref 15315 . A G . PASS DP=1268;SS=0;SSC=0;GPV=1E0;SPV=8.8466E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:740:736:3:0.41%:165,571,3,0 0/0:.:528:527:1:0.19%:106,421,0,1 -Example1_ref 15316 . T TCACTGTCC . PASS DP=1222;SS=0;SSC=0;GPV=1E0;SPV=5.8674E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:717:716:1:0.14%:162,554,1,0 0/0:.:505:505:0:0%:96,409,0,0 -Example1_ref 15317 . C A . PASS DP=1204;SS=0;SSC=0;GPV=1E0;SPV=5.7973E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:698:697:1:0.14%:154,543,1,0 0/0:.:506:506:0:0%:96,410,0,0 -Example1_ref 15318 . T TC . PASS DP=1167;SS=0;SSC=0;GPV=1E0;SPV=5.8526E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:683:682:1:0.15%:150,532,1,0 0/0:.:484:484:0:0%:97,387,0,0 -Example1_ref 15319 . T A . PASS DP=1125;SS=0;SSC=0;GPV=1E0;SPV=5.774E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:650:648:1:0.15%:146,502,0,1 0/0:.:475:475:0:0%:94,381,0,0 -Example1_ref 15320 . G T . PASS DP=1077;SS=0;SSC=0;GPV=1E0;SPV=1.7669E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:624:624:0:0%:123,501,0,0 0/0:.:453:451:2:0.44%:73,378,2,0 -Example1_ref 15321 . A T . PASS DP=1116;SS=0;SSC=0;GPV=1E0;SPV=5.7885E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:646:645:1:0.15%:137,508,1,0 0/0:.:470:470:0:0%:89,381,0,0 -Example1_ref 15322 . C A . PASS DP=1063;SS=0;SSC=0;GPV=1E0;SPV=5.7681E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:614:611:1:0.16%:115,496,0,1 0/0:.:449:449:0:0%:75,374,0,0 -Example1_ref 15323 . C A . PASS DP=1047;SS=0;SSC=0;GPV=1E0;SPV=1.7318E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:611:611:0:0%:115,496,0,0 0/0:.:436:434:2:0.46%:71,363,0,2 -Example1_ref 15324 . T . PASS DP=1034;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:606:606:0:0%:120,486,0,0 0/0:.:428:428:0:0%:74,354,0,0 -Example1_ref 15325 . T C . PASS DP=1046;SS=0;SSC=0;GPV=1E0;SPV=6.6125E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:609:608:1:0.16%:118,490,0,1 0/0:.:437:436:1:0.23%:74,362,1,0 -Example1_ref 15326 . T A . PASS DP=1049;SS=0;SSC=0;GPV=1E0;SPV=5.8151E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:610:609:1:0.16%:119,490,0,1 0/0:.:439:439:0:0%:74,365,0,0 -Example1_ref 15327 . A . PASS DP=1043;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:609:609:0:0%:115,494,0,0 0/0:.:434:434:0:0%:72,362,0,0 -Example1_ref 15328 . T . PASS DP=1020;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:600:600:0:0%:114,486,0,0 0/0:.:420:420:0:0%:67,353,0,0 -Example1_ref 15329 . C A . PASS DP=1026;SS=0;SSC=0;GPV=1E0;SPV=4.1715E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:598:598:0:0%:108,490,0,0 0/0:.:428:427:1:0.23%:67,360,0,1 -Example1_ref 15330 . T . PASS DP=1002;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:588:588:0:0%:107,481,0,0 0/0:.:414:414:0:0%:65,349,0,0 -Example1_ref 15331 . C A . PASS DP=1004;SS=0;SSC=0;GPV=1E0;SPV=5.8566E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:588:587:1:0.17%:105,482,0,1 0/0:.:416:416:0:0%:60,356,0,0 -Example1_ref 15332 . T . PASS DP=994;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:580:580:0:0%:104,476,0,0 0/0:.:414:414:0:0%:61,353,0,0 -Example1_ref 15333 . A . PASS DP=984;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:576:576:0:0%:96,480,0,0 0/0:.:408:408:0:0%:50,358,0,0 -Example1_ref 15334 . A . PASS DP=981;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:574:574:0:0%:96,478,0,0 0/0:.:407:407:0:0%:50,357,0,0 -Example1_ref 15335 . G T . PASS DP=962;SS=0;SSC=0;GPV=1E0;SPV=4.1684E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:561:561:0:0%:88,473,0,0 0/0:.:401:400:1:0.25%:51,349,0,1 -Example1_ref 15336 . C A . PASS DP=941;SS=0;SSC=0;GPV=1E0;SPV=1.9834E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:549:548:1:0.18%:81,467,1,0 0/0:.:392:389:3:0.77%:48,341,0,3 -Example1_ref 15337 . C A . PASS DP=944;SS=0;SSC=0;GPV=1E0;SPV=4.1737E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:550:550:0:0%:84,466,0,0 0/0:.:394:393:1:0.25%:48,345,0,1 -Example1_ref 15338 . T . PASS DP=915;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:531:0:0%:89,442,0,0 0/0:.:384:384:0:0%:50,334,0,0 -Example1_ref 15339 . A C . PASS DP=915;SS=0;SSC=0;GPV=1E0;SPV=5.8033E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:531:530:1:0.19%:85,445,0,1 0/0:.:384:384:0:0%:47,337,0,0 -Example1_ref 15340 . A . PASS DP=910;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:529:529:0:0%:85,444,0,0 0/0:.:381:381:0:0%:46,335,0,0 -Example1_ref 15341 . G . PASS DP=893;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:515:515:0:0%:80,435,0,0 0/0:.:378:378:0:0%:45,333,0,0 -Example1_ref 15342 . G GACTGTCTCTT . PASS DP=882;SS=0;SSC=0;GPV=1E0;SPV=6.6724E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:509:508:1:0.2%:74,434,1,0 0/0:.:373:372:1:0.27%:42,330,1,0 -Example1_ref 15343 . A T . PASS DP=876;SS=0;SSC=0;GPV=1E0;SPV=6.6926E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:504:503:1:0.2%:73,430,0,1 0/0:.:372:371:1:0.27%:41,330,0,1 -Example1_ref 15344 . T . PASS DP=817;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:468:468:0:0%:78,390,0,0 0/0:.:349:349:0:0%:44,305,0,0 -Example1_ref 15345 . A . PASS DP=806;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:459:459:0:0%:76,383,0,0 0/0:.:347:347:0:0%:44,303,0,0 -Example1_ref 15346 . G . PASS DP=801;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:455:455:0:0%:74,381,0,0 0/0:.:346:346:0:0%:41,305,0,0 -Example1_ref 15347 . A . PASS DP=815;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:462:462:0:0%:76,386,0,0 0/0:.:353:353:0:0%:45,308,0,0 -Example1_ref 15348 . CA C . PASS DP=804;SS=0;SSC=0;GPV=1E0;SPV=5.6965E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:458:457:1:0.22%:75,382,0,1 0/0:.:346:346:0:0%:42,304,0,0 -Example1_ref 15349 . A G . PASS DP=794;SS=0;SSC=0;GPV=1E0;SPV=5.6873E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:452:450:1:0.22%:75,375,0,1 0/0:.:342:342:0:0%:43,299,0,0 -Example1_ref 15350 . A . PASS DP=771;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:437:437:0:0%:71,366,0,0 0/0:.:334:334:0:0%:41,293,0,0 -Example1_ref 15351 . A . PASS DP=771;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:436:436:0:0%:71,365,0,0 0/0:.:335:335:0:0%:42,293,0,0 -Example1_ref 15352 . A . PASS DP=764;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:433:433:0:0%:72,361,0,0 0/0:.:331:331:0:0%:39,292,0,0 -Example1_ref 15353 . A G . PASS DP=766;SS=0;SSC=0;GPV=1E0;SPV=4.3342E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:434:434:0:0%:71,363,0,0 0/0:.:332:331:1:0.3%:39,292,0,1 -Example1_ref 15354 . G T . PASS DP=758;SS=0;SSC=0;GPV=1E0;SPV=5.6992E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:432:431:1:0.23%:68,363,1,0 0/0:.:326:326:0:0%:41,285,0,0 -Example1_ref 15355 . T C . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=6.8173E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:416:415:1:0.24%:72,343,0,1 0/0:.:321:320:1:0.31%:41,279,0,1 -Example1_ref 15356 . A . PASS DP=737;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:420:420:0:0%:73,347,0,0 0/0:.:317:317:0:0%:38,279,0,0 -Example1_ref 15357 . A . PASS DP=732;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:415:415:0:0%:72,343,0,0 0/0:.:317:317:0:0%:40,277,0,0 -Example1_ref 15358 . G A . PASS DP=725;SS=0;SSC=0;GPV=1E0;SPV=4.331E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:411:411:0:0%:68,343,0,0 0/0:.:314:313:1:0.32%:38,275,0,1 -Example1_ref 15359 . A T . PASS DP=729;SS=0;SSC=0;GPV=1E0;SPV=5.6516E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:412:411:1:0.24%:68,343,1,0 0/0:.:317:317:0:0%:38,279,0,0 -Example1_ref 15360 . A . PASS DP=724;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:408:408:0:0%:65,343,0,0 0/0:.:316:316:0:0%:39,277,0,0 -Example1_ref 15361 . A . PASS DP=713;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:402:402:0:0%:65,337,0,0 0/0:.:311:311:0:0%:38,273,0,0 -Example1_ref 15362 . A . PASS DP=709;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:400:0:0%:61,339,0,0 0/0:.:309:309:0:0%:38,271,0,0 -Example1_ref 15363 . AC A . PASS DP=713;SS=0;SSC=0;GPV=1E0;SPV=8.1732E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:405:403:2:0.49%:63,340,1,1 0/0:.:308:307:1:0.32%:37,270,1,0 -Example1_ref 15364 . C T . PASS DP=704;SS=0;SSC=0;GPV=1E0;SPV=1.8982E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:397:397:0:0%:63,334,0,0 0/0:.:307:305:2:0.65%:35,270,0,2 -Example1_ref 15365 . A . PASS DP=707;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:396:396:0:0%:63,333,0,0 0/0:.:311:311:0:0%:37,274,0,0 -Example1_ref 15366 . T A . PASS DP=708;SS=0;SSC=0;GPV=1E0;SPV=5.6497E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:400:399:1:0.25%:64,335,0,1 0/0:.:308:308:0:0%:35,273,0,0 -Example1_ref 15367 . G GTCTCTTA . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=4.3358E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:388:388:0:0%:61,327,0,0 0/0:.:298:296:1:0.34%:30,266,1,0 -Example1_ref 15368 . T . PASS DP=692;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:62,328,0,0 0/0:.:302:301:0:0%:34,267,0,0 -Example1_ref 15369 . A . PASS DP=686;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:390:390:0:0%:62,328,0,0 0/0:.:296:296:0:0%:32,264,0,0 -Example1_ref 15370 . A . PASS DP=679;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:57,326,0,0 0/0:.:296:296:0:0%:31,265,0,0 -Example1_ref 15371 . T . PASS DP=674;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:387:386:0:0%:61,325,0,0 0/0:.:287:286:0:0%:31,255,0,0 -Example1_ref 15372 . A . PASS DP=671;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:383:383:0:0%:60,323,0,0 0/0:.:288:288:0:0%:32,256,0,0 -Example1_ref 15373 . T C . PASS DP=650;SS=0;SSC=0;GPV=1E0;SPV=5.6308E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:366:365:1:0.27%:60,305,0,1 0/0:.:284:284:0:0%:31,253,0,0 -Example1_ref 15374 . A . PASS DP=618;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:347:347:0:0%:60,287,0,0 0/0:.:271:271:0:0%:32,239,0,0 -Example1_ref 15375 . T . PASS DP=611;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:341:340:0:0%:55,285,0,0 0/0:.:270:270:0:0%:32,238,0,0 -Example1_ref 15376 . A . PASS DP=562;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:312:311:0:0%:53,258,0,0 0/0:.:250:250:0:0%:31,219,0,0 -Example1_ref 15377 . T . PASS DP=542;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:303:302:0:0%:51,251,0,0 0/0:.:239:239:0:0%:29,210,0,0 -Example1_ref 15378 . A . PASS DP=468;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:261:260:0:0%:48,212,0,0 0/0:.:207:207:0:0%:28,179,0,0 -Example1_ref 15379 . T . PASS DP=437;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:242:240:0:0%:45,195,0,0 0/0:.:195:195:0:0%:26,169,0,0 -Example1_ref 15380 . A . PASS DP=418;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:229:217:0:0%:35,182,0,0 0/0:.:189:183:0:0%:23,160,0,0 -Example1_ref 15381 . C . PASS DP=384;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:212:211:0:0%:35,176,0,0 0/0:.:172:171:0:0%:18,153,0,0 -Example1_ref 15382 . C CAAACA . PASS DP=172;SS=0;SSC=0;GPV=1E0;SPV=5.7051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:98:88:1:1.12%:7,81,1,0 0/0:.:74:67:0:0%:5,62,0,0