From 7c683554874c730abff736b92578e4c2d17b8d09 Mon Sep 17 00:00:00 2001 From: Sam <49676916+viko18@users.noreply.github.com> Date: Thu, 29 Sep 2022 08:20:26 +0200 Subject: [PATCH] Update README.md --- 02_Cross-species_Registration/README.md | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/02_Cross-species_Registration/README.md b/02_Cross-species_Registration/README.md index a21f603..1dea794 100644 --- a/02_Cross-species_Registration/README.md +++ b/02_Cross-species_Registration/README.md @@ -1,6 +1,13 @@ # Cross-Species Registration -The modulated jacobians and used to create the cross-species expansion maps as well as the chimpanzee (Juna) to human (MNI) deformation field map for deforming OPNMF solution to MNI space can be found [here](https://zenodo.org/record/7116203#.YzLvCfexWV4). +The tempates used for cross-species expansion and registration are: + +- Human: [MNI](http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152NLin2009) +- Chimpanzee: [Juna](http://junachimp.inm7.de/) +- Baboon: [Haiko89](https://www.nitrc.org/projects/haiko89/) +- Macaque: [D99](https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/nonhuman/macaque_tempatl/atlas_d99v2.html), [INIA19](https://www.nitrc.org/projects/inia19/), and [NMT](https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/nonhuman/macaque_tempatl/template_nmtv2.html#download-symmetric-nmt-v2-datasets) + +The modulated jacobians are used to create the cross-species expansion maps as well as the chimpanzee (Juna) to human (MNI) deformation field map for deforming OPNMF solution to MNI space can be found [here](https://zenodo.org/record/7116203#.YzLvCfexWV4). The ```exp_create.sh``` script uses FSL in particular ```fslmaths``` to mask and establish the expansion maps from the jacobians.