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Create --add-identity option #4495

Merged
merged 1 commit into from
Jan 22, 2025
Merged

Create --add-identity option #4495

merged 1 commit into from
Jan 22, 2025

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faithokamoto
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Changelog Entry

To be copied to the draft changelog by merger:

  • Adds the option --add-identity to vg inject (allow calculating 'identity' statistic for linear mapper output BAMs)

Description

Simple addition to allow calculating a directly comparable 'identity' statistic when importing alignments from BAMs. This can then be output by vg filter --tsv-out (once #4491 is merged). The code to calculate 'identity' is the same as in e.g. mapper.cpp.

@faithokamoto faithokamoto merged commit b09617f into master Jan 22, 2025
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@faithokamoto faithokamoto deleted the vg-inject-identity branch January 22, 2025 20:19
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2 participants