diff --git a/src/traversal_clusters.cpp b/src/traversal_clusters.cpp index 7e361c84f6..d96a82f3b9 100644 --- a/src/traversal_clusters.cpp +++ b/src/traversal_clusters.cpp @@ -384,8 +384,7 @@ void merge_equivalent_traversals_in_graph(MutablePathHandleGraph* graph, const u SnarlDistanceIndex distance_index; { IntegratedSnarlFinder snarl_finder(*graph); - // todo: why can't I pass in 0 below -- I don't want any dinstances! - fill_in_distance_index(&distance_index, graph, &snarl_finder, 1); + fill_in_distance_index(&distance_index, graph, &snarl_finder, 0); } // only consider embedded paths that span snarl diff --git a/test/t/11_vg_paths.t b/test/t/11_vg_paths.t index 36729a7a0b..e21a8fe2c0 100644 --- a/test/t/11_vg_paths.t +++ b/test/t/11_vg_paths.t @@ -90,10 +90,10 @@ diff original.fa norm_x4.fa is $? 0 "path normalizer doesnt alter path sequences" # note: x3 is x4 in reverse, so we key on that -grep x3 norm_x2.gfa | awk '{print $3}' > x4.path -grep x3 norm_x2.gfa | awk '{print $3}' >> x4.path -grep x3 norm_x2.gfa | awk '{print $3}'> x4.norm.path -grep x5 norm_x2.gfa | awk '{print $3}' >> x4.norm.path +grep x3 norm_x4.gfa | awk '{print $3}' > x4.path +grep x3 norm_x4.gfa | awk '{print $3}' >> x4.path +grep x3 norm_x4.gfa | awk '{print $3}'> x4.norm.path +grep x5 norm_x4.gfa | awk '{print $3}' >> x4.norm.path diff x4.path x4.norm.path is $? 0 "path normalizere correctly snapped all equivalent paths to x4"