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Use P lines to improve GFA round-tripping #4242

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Mar 25, 2024
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Changelog Entry

To be copied to the draft changelog by merger:

  • vg GFA output should now use P lines instead of W lines when nonzero phase blocks are present, to allow them to be round-tripped.

Description

This should fix #4240 by using P lines instead of W lines if a path has a nonzero phase block number.

…and make them P lines instead
@adamnovak adamnovak merged commit 5df8ef6 into master Mar 25, 2024
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VG convert to gfa and back will drop path data.
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