Merge pull request #4491 from vgteam/add-identity-field-option

Add "identity" as a TSV option
vgteam · Jan 16, 2025 · c751f44 · c751f44 · adamnovak · Jan 17, 2025
2 parents d6b219b + bf8a43e
commit c751f44
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/src/readfilter.hpp b/src/readfilter.hpp
@@ -1534,6 +1534,8 @@ inline void ReadFilter<Alignment>::emit_tsv(Alignment& read, std::ostream& out)
             out << softclip_start(read);
         } else if (field == "softclip_end") {
             out << softclip_end(read);
+        } else if (field == "identity") {
+            out << read.identity();
         } else if (field == "mapping_quality") {
             out << get_mapq(read); 
         } else if (field == "sequence") {