BSgenome.Paeruginosa.NCBI.PAO1

The package provides a full genome assembly of P. aeruginosa str. PAO1. Data source: NCBI.

Installation

You can install the development version of BSgenome.Paeruginosa.NCBI.PAO1 from GitHub with:

devtools::install_github('utubun/BSgenome.Paeruginosa.NCBI.PAO1')

Example

Load P. aeruginosa str. PAO1 genome, and assign it ot the variable genome:

library(BSgenome.Paeruginosa.NCBI.PAO1)

genome <- BSgenome.Paeruginosa.NCBI.PAO1

Get the information about the genome:

sprintf(
  'Genome:\t%s\nName:\t%s\nOrganism:\t%s\nProvider:\t%s\nReleased:\t%s',
  sapply(c(bsgenomeName, commonName, organism, provider, releaseDate), \(f) {f(genome)})
)

List the methods available for the given object class:

methods(class = class(genome))

More examples

help(package = 'BSgenome')