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CMakeLists.txt
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# CMake is the default build system for UGENE.
# Ensure you add the Qt5_DIR variable, example: Qt5_DIR=/home/yalgaer/tools/qt/5.15.6/gcc_64.
#
# For CLion developers:
# Add Qt5_DIR variable in File → Settings → Build, Execution, Deployment → CMake.
cmake_minimum_required(VERSION 3.20)
project(ugene)
#set(CMAKE_VERBOSE_MAKEFILE ON)
set(CMAKE_OSX_ARCHITECTURES "x86_64" CACHE INTERNAL "" FORCE)
set(UGENE_VERSION 53.0-dev)
message(STATUS "CMake version: ${CMAKE_VERSION}")
message(STATUS "CMake build architecture: ${CMAKE_SYSTEM_PROCESSOR}")
add_definitions(
-DUGENE_VERSION=${UGENE_VERSION}
-DQT_FATAL_ASSERT
-DQT_DISABLE_DEPRECATED_BEFORE=0x050F00
)
set(CMAKE_CXX_STANDARD 14)
set(CMAKE_DEBUG_POSTFIX "d")
# Set a default build type for single-configuration
# CMake generators if no build type is set.
if (NOT CMAKE_CONFIGURATION_TYPES AND NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE Release)
endif ()
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -D_DEBUG")
set(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG} -D_DEBUG")
include_directories(src/libs_3rdparty/qtscript/script/api)
if (WIN32)
add_definitions(
-D_UNICODE
-DUNICODE
-DUGENE_USE_BUNDLED_ZLIB
-DNOMINMAX
-D_XKEYCHECK_H
-D_USE_MATH_DEFINES
)
string(REPLACE "/RTC1" "" CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG}")
string(REPLACE "/RTC1" "" CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG}")
# Add map files for release binaries
set(CMAKE_EXE_LINKER_FLAGS_RELEASE "${CMAKE_EXE_LINKER_FLAGS_RELEASE} /INCREMENTAL:NO /MAP /MAPINFO:EXPORTS /DEBUG")
set(CMAKE_SHARED_LINKER_FLAGS_RELEASE "${CMAKE_SHARED_LINKER_FLAGS_RELEASE} /INCREMENTAL:NO /MAP /MAPINFO:EXPORTS /DEBUG")
endif ()
# Use to disable -isystem support and work in qmake mode.
# set(CMAKE_NO_SYSTEM_FROM_IMPORTED True)
if (CMAKE_COMPILER_IS_GNUCXX)
if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 9)
message(FATAL_ERROR "GCC version must be at least 9. Detected version: ${CMAKE_CXX_COMPILER_VERSION}")
endif ()
message(STATUS "Using GCC version: ${CMAKE_CXX_COMPILER_VERSION}")
# Common warning flags for GCC
string(CONCAT GCC_WARNING_FLAGS
" -Wall"
" -Werror=deprecated-copy"
" -Werror=maybe-uninitialized"
" -Werror=parentheses"
" -Werror=return-type"
" -Werror=sequence-point"
" -Werror=switch"
" -Werror=uninitialized"
" -Werror=unused-parameter"
" -Werror=unused-value"
" -Werror=unused-variable"
" -Wno-deprecated-declarations"
# TODO: "-Werror=shadow=local"
)
string(APPEND GCC_WARNING_FLAGS)
# Apply the warning flags
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${GCC_WARNING_FLAGS}")
LIST(APPEND COMPILER_FLAGS -Wl,--no-undefined)
endif ()
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/dist)
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/dist)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/dist)
if (CMAKE_GENERATOR MATCHES "Visual Studio")
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/dist)
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/dist)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/dist)
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/dist)
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/dist)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/dist)
endif ()
# 3rd party libraries.
add_subdirectory(src/libs_3rdparty/QSpec)
add_subdirectory(src/libs_3rdparty/breakpad)
add_subdirectory(src/libs_3rdparty/qscore)
add_subdirectory(src/libs_3rdparty/qtscript)
add_subdirectory(src/libs_3rdparty/samtools)
add_subdirectory(src/libs_3rdparty/sqlite3)
add_subdirectory(src/libs_3rdparty/zlib)
# Core libraries.
add_subdirectory(src/corelibs/U2Algorithm)
add_subdirectory(src/corelibs/U2Core)
add_subdirectory(src/corelibs/U2Designer)
add_subdirectory(src/corelibs/U2Formats)
add_subdirectory(src/corelibs/U2Gui)
add_subdirectory(src/corelibs/U2Lang)
add_subdirectory(src/corelibs/U2Private)
add_subdirectory(src/corelibs/U2Script)
add_subdirectory(src/corelibs/U2Test)
add_subdirectory(src/corelibs/U2View)
# Executables.
add_subdirectory(src/plugins_checker)
add_subdirectory(src/ugenecl)
add_subdirectory(src/ugenem)
add_subdirectory(src/ugeneui)
# Plugins.
add_subdirectory(src/plugins/CoreTests)
add_subdirectory(src/plugins/GUITestBase)
add_subdirectory(src/plugins/annotator)
add_subdirectory(src/plugins/api_tests)
add_subdirectory(src/plugins/biostruct3d_view)
add_subdirectory(src/plugins/chroma_view)
add_subdirectory(src/plugins/circular_view)
add_subdirectory(src/plugins/dbi_bam)
add_subdirectory(src/plugins/dna_export)
add_subdirectory(src/plugins/dna_flexibility)
add_subdirectory(src/plugins/dna_graphpack)
add_subdirectory(src/plugins/dna_stat)
add_subdirectory(src/plugins/dotplot)
add_subdirectory(src/plugins/enzymes)
add_subdirectory(src/plugins/external_tool_support)
add_subdirectory(src/plugins/genecut)
add_subdirectory(src/plugins/genome_aligner)
add_subdirectory(src/plugins/linkdata_support)
add_subdirectory(src/plugins/orf_marker)
add_subdirectory(src/plugins/pcr)
add_subdirectory(src/plugins/perf_monitor)
add_subdirectory(src/plugins/query_designer)
add_subdirectory(src/plugins/remote_blast)
add_subdirectory(src/plugins/repeat_finder)
add_subdirectory(src/plugins/smith_waterman)
add_subdirectory(src/plugins/test_runner)
add_subdirectory(src/plugins/weight_matrix)
add_subdirectory(src/plugins/workflow_designer)
# Third party plugins.
add_subdirectory(src/plugins_3rdparty/ball)
add_subdirectory(src/plugins_3rdparty/gor4)
add_subdirectory(src/plugins_3rdparty/hmm2)
add_subdirectory(src/plugins_3rdparty/phylip)
add_subdirectory(src/plugins_3rdparty/primer3)
add_subdirectory(src/plugins_3rdparty/psipred)
add_subdirectory(src/plugins_3rdparty/ptools)
add_subdirectory(src/plugins_3rdparty/sitecon)
add_subdirectory(src/plugins_3rdparty/umuscle)
add_subdirectory(src/plugins_3rdparty/variants)
# Generate translations.
find_package(Qt5LinguistTools REQUIRED)
set(LANGUAGES "RU" "TR")
foreach (LANG IN LISTS LANGUAGES)
string(TOLOWER ${LANG} LANG_LOWER)
set(TRANSLATIONS_VAR GLOBAL_TRANSLATIONS_${LANG})
set(QM_FILE ${CMAKE_BINARY_DIR}/dist/transl_${LANG_LOWER}.qm)
add_custom_command(
OUTPUT ${QM_FILE}
COMMAND ${Qt5_LRELEASE_EXECUTABLE} ${${TRANSLATIONS_VAR}} -qm ${QM_FILE}
DEPENDS ${${TRANSLATIONS_VAR}}
COMMENT "Generating translation file: ${QM_FILE}"
)
add_custom_target(${LANG}_translation ALL DEPENDS ${QM_FILE})
endforeach ()
include(${CMAKE_SOURCE_DIR}/cmake/Environment.cmake)
# UGENE shell script
file(COPY "${CMAKE_SOURCE_DIR}/etc/shared/ugene${UGENE_BUILD_MODE_SUFFIX}" DESTINATION "${CMAKE_BINARY_DIR}/dist")