From 861c6a606a4b9b48cd453abdcc8249e17fadb4d6 Mon Sep 17 00:00:00 2001 From: PlanXCyborg <38964842+PlanXCyborg@users.noreply.github.com> Date: Fri, 16 Aug 2024 12:49:46 -0700 Subject: [PATCH 01/32] Updating CI env with 2024.09 jenkins-perf.planx-pla.net 1723820443 (#2980) * apply version 2024.09 to jenkins-perf.planx-pla.net * apply version 2024.09 to jenkins-perf.planx-pla.net --- jenkins-perf.planx-pla.net/manifest.json | 28 +++++++++---------- .../manifests/hatchery/hatchery.json | 2 +- 2 files changed, 15 insertions(+), 15 deletions(-) diff --git a/jenkins-perf.planx-pla.net/manifest.json b/jenkins-perf.planx-pla.net/manifest.json index 88adf88c7..6aaa5fc68 100644 --- a/jenkins-perf.planx-pla.net/manifest.json +++ b/jenkins-perf.planx-pla.net/manifest.json @@ -7,21 +7,21 @@ "autodeploy": "yes" }, "versions": { - "arborist": "quay.io/cdis/arborist:integration202409", + "arborist": "quay.io/cdis/arborist:2024.09", "aws-es-proxy": "quay.io/cdis/aws-es-proxy:v1.3.1", - "fence": "quay.io/cdis/fence:integration202409", + "fence": "quay.io/cdis/fence:2024.09", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", - "indexd": "quay.io/cdis/indexd:integration202409", - "peregrine": "quay.io/cdis/peregrine:integration202409", - "portal": "quay.io/cdis/data-portal:integration202409", - "revproxy": "quay.io/cdis/nginx:integration202409", - "sheepdog": "quay.io/cdis/sheepdog:integration202409", - "manifestservice": "quay.io/cdis/manifestservice:integration202409", - "wts": "quay.io/cdis/workspace-token-service:integration202409", - "sower": "quay.io/cdis/sower:integration202409", - "hatchery": "quay.io/cdis/hatchery:integration202409", - "metadata": "quay.io/cdis/metadata-service:integration202409", - "dashboard": "quay.io/cdis/gen3-statics:integration202409" + "indexd": "quay.io/cdis/indexd:2024.09", + "peregrine": "quay.io/cdis/peregrine:2024.09", + "portal": "quay.io/cdis/data-portal:2024.09", + "revproxy": "quay.io/cdis/nginx:2024.09", + "sheepdog": "quay.io/cdis/sheepdog:2024.09", + "manifestservice": "quay.io/cdis/manifestservice:2024.09", + "wts": "quay.io/cdis/workspace-token-service:2024.09", + "sower": "quay.io/cdis/sower:2024.09", + "hatchery": "quay.io/cdis/hatchery:2024.09", + "metadata": "quay.io/cdis/metadata-service:2024.09", + "dashboard": "quay.io/cdis/gen3-statics:2024.09" }, "arborist": { "deployment_version": "2" @@ -45,7 +45,7 @@ "name": "pelican-export", "container": { "name": "job-task", - "image": "quay.io/cdis/pelican:integration202409", + "image": "quay.io/cdis/pelican:2024.09", "pull_policy": "always", "env": [] }, diff --git a/jenkins-perf.planx-pla.net/manifests/hatchery/hatchery.json b/jenkins-perf.planx-pla.net/manifests/hatchery/hatchery.json index 27a18643d..cf88178be 100644 --- a/jenkins-perf.planx-pla.net/manifests/hatchery/hatchery.json +++ b/jenkins-perf.planx-pla.net/manifests/hatchery/hatchery.json @@ -5,7 +5,7 @@ "sidecar": { "cpu-limit": "1.0", "memory-limit": "256Mi", - "image": "quay.io/cdis/gen3fuse-sidecar:integration202409", + "image": "quay.io/cdis/gen3fuse-sidecar:2024.09", "env": { "NAMESPACE": "jenkins-perf", "HOSTNAME": "jenkins-perf.planx-pla.net" From c8494c58c10c4a22fe56c201e1a796a4acbb531b Mon Sep 17 00:00:00 2001 From: PlanXCyborg <38964842+PlanXCyborg@users.noreply.github.com> Date: Fri, 16 Aug 2024 13:38:59 -0700 Subject: [PATCH 02/32] Updating CI env with 2024.09 qa-dcp.planx-pla.net 1723820437 (#2979) * apply version 2024.09 to qa-dcp.planx-pla.net * apply version 2024.09 to qa-dcp.planx-pla.net --------- Co-authored-by: Hara Prasad --- qa-dcp.planx-pla.net/manifest.json | 46 +++++++++---------- .../manifests/hatchery/hatchery.json | 2 +- 2 files changed, 24 insertions(+), 24 deletions(-) diff --git a/qa-dcp.planx-pla.net/manifest.json b/qa-dcp.planx-pla.net/manifest.json index cf1beaf7b..bf8f1a6c4 100644 --- a/qa-dcp.planx-pla.net/manifest.json +++ b/qa-dcp.planx-pla.net/manifest.json @@ -7,25 +7,25 @@ "autodeploy": "yes" }, "versions": { - "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:integration202409", + "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2024.09", "aws-es-proxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/aws-es-proxy:v1.3.1", - "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:integration202409", - "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:integration202409", - "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:integration202409", - "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:integration202409", - "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:integration202409", - "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:integration202409", + "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2024.09", + "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.09", + "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.09", + "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2024.09", + "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2024.09", + "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2024.09", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", - "spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:integration202409", - "tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:integration202409", - "guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:integration202409", - "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:integration202409", - "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:integration202409", + "spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2024.09", + "tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:2024.09", + "guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:2024.09", + "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2024.09", + "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.09", "ambassador": "quay.io/datawire/ambassador:1.4.2", - "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:integration202409", - "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:integration202409", - "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:integration202409", - "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:integration202409" + "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2024.09", + "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.09", + "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2024.09", + "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.09" }, "google": { "enabled": "yes" @@ -41,7 +41,7 @@ "serviceAccountName": "jobs-qa-dcp-planx-pla-net", "container": { "name": "job-task", - "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-manifest-ingestion:integration202409", + "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-manifest-ingestion:2024.09", "pull_policy": "Always", "env": [ { @@ -81,7 +81,7 @@ "serviceAccountName": "jobs-qa-dcp-planx-pla-net", "container": { "name": "job-task", - "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/get-dbgap-metadata:integration202409", + "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/get-dbgap-metadata:2024.09", "pull_policy": "Always", "env": [], "volumeMounts": [ @@ -111,7 +111,7 @@ "serviceAccountName": "jobs-qa-dcp-planx-pla-net", "container": { "name": "job-task", - "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifest-indexing:integration202409", + "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifest-indexing:2024.09", "pull_policy": "Always", "env": [ { @@ -151,7 +151,7 @@ "serviceAccountName": "jobs-qa-dcp-planx-pla-net", "container": { "name": "job-task", - "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/download-indexd-manifest:integration202409", + "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/download-indexd-manifest:2024.09", "pull_policy": "Always", "env": [ { @@ -190,7 +190,7 @@ "action": "export", "container": { "name": "job-task", - "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:integration202409", + "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2024.09", "pull_policy": "Always", "env": [ { @@ -254,7 +254,7 @@ "action": "export-files", "container": { "name": "job-task", - "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:integration202409", + "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2024.09", "pull_policy": "Always", "env": [ { @@ -320,7 +320,7 @@ ], "ssjdispatcher": { "job_images": { - "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:integration202409" + "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2024.09" } }, "global": { diff --git a/qa-dcp.planx-pla.net/manifests/hatchery/hatchery.json b/qa-dcp.planx-pla.net/manifests/hatchery/hatchery.json index 41afb9316..5a698ac96 100644 --- a/qa-dcp.planx-pla.net/manifests/hatchery/hatchery.json +++ b/qa-dcp.planx-pla.net/manifests/hatchery/hatchery.json @@ -5,7 +5,7 @@ "sidecar": { "cpu-limit": "1.0", "memory-limit": "256Mi", - "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:integration202409", + "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:2024.09", "env": { "NAMESPACE": "qa-dcp", "HOSTNAME": "qa-dcp.planx-pla.net" From a8b9d42764f413d45d637c650cfd9660cc39832f Mon Sep 17 00:00:00 2001 From: PlanXCyborg <38964842+PlanXCyborg@users.noreply.github.com> Date: Fri, 16 Aug 2024 13:39:19 -0700 Subject: [PATCH 03/32] Updating CI env with 2024.09 qa-heal.planx-pla.net 1723820448 (#2981) * apply version 2024.09 to qa-heal.planx-pla.net * apply version 2024.09 to qa-heal.planx-pla.net * revert the portal version to branch * Update qa-heal.planx-pla.net/manifests/hatchery/hatchery.json --------- Co-authored-by: Atharva Rane <41084525+atharvar28@users.noreply.github.com> Co-authored-by: Mingfei Shao <2475897+mfshao@users.noreply.github.com> --- qa-heal.planx-pla.net/manifest.json | 34 +++++++++---------- .../manifests/hatchery/hatchery.json | 2 +- 2 files changed, 18 insertions(+), 18 deletions(-) diff --git a/qa-heal.planx-pla.net/manifest.json b/qa-heal.planx-pla.net/manifest.json index a70db1b49..589c9f85c 100644 --- a/qa-heal.planx-pla.net/manifest.json +++ b/qa-heal.planx-pla.net/manifest.json @@ -8,27 +8,27 @@ }, "versions": { "ambassador": "quay.io/datawire/ambassador:1.4.2", - "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2024.08", - "audit-service": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/audit-service:2024.08", + "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2024.09", + "audit-service": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/audit-service:2024.09", "aws-es-proxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/aws-es-proxy:v1.3.1", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:0.5.0", - "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2024.08", - "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2024.08", + "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2024.09", + "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2024.09", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", "frontend-framework": "quay.io/cdis/frontend-framework:0.7.2", - "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.08", - "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.08", + "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.09", + "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.09", "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:0.2.4", - "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.08", - "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.08", - "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.08", + "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.09", + "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.09", + "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.09", "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:feat_cde-submission", - "requestor": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/requestor:2024.08", - "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2024.08", - "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2024.08", - "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2024.08", - "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2024.08", - "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2024.08" + "requestor": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/requestor:2024.09", + "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2024.09", + "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2024.09", + "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2024.09", + "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2024.09", + "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2024.09" }, "arborist": { "deployment_version": "2" @@ -43,7 +43,7 @@ }, "ssjdispatcher": { "job_images": { - "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2024.08" + "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2024.09" } }, "global": { @@ -76,7 +76,7 @@ "activeDeadlineSeconds": 600, "container": { "name": "job-task", - "image": "quay.io/cdis/batch-export:2024.08", + "image": "quay.io/cdis/batch-export:2024.09", "pull_policy": "Always", "labels": { "internet": "yes" diff --git a/qa-heal.planx-pla.net/manifests/hatchery/hatchery.json b/qa-heal.planx-pla.net/manifests/hatchery/hatchery.json index 4d1923d42..47e4e239d 100644 --- a/qa-heal.planx-pla.net/manifests/hatchery/hatchery.json +++ b/qa-heal.planx-pla.net/manifests/hatchery/hatchery.json @@ -7,7 +7,7 @@ "sidecar": { "cpu-limit": "1.0", "memory-limit": "256Mi", - "image": "quay.io/cdis/ecs-ws-sidecar:2024.08", + "image": "quay.io/cdis/ecs-ws-sidecar:0.2.0", "env": { "NAMESPACE": "qa-heal" }, From da2583464d20a93e8b280350a48d9e3bf9f1fb92 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Fri, 16 Aug 2024 16:36:40 -0500 Subject: [PATCH 04/32] Update gitops.json - email update email from heal-support@datacommons.io to heal-support@gen3.org --- qa-heal.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-heal.planx-pla.net/portal/gitops.json b/qa-heal.planx-pla.net/portal/gitops.json index d0fcd1726..9f491a9a1 100644 --- a/qa-heal.planx-pla.net/portal/gitops.json +++ b/qa-heal.planx-pla.net/portal/gitops.json @@ -91,7 +91,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "This website supports the discovery, analysis and sharing of data and aims to support the accelerated discovery and development of therapies, diagnostic tests, and other technologies.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "heal-support@datacommons.io", + "email": "heal-support@gen3.org", "image": "/../../../../custom/sponsors/gitops-sponsors/heal_login_color_sides" }, "categorical9Colors": [ From a9818bf5a40d7a4c61f6e5f509cb05c9e113c41d Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:00:24 -0500 Subject: [PATCH 05/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa.planx-pla.net/portal/gitops.json b/qa.planx-pla.net/portal/gitops.json index 881631ed1..07401a41e 100644 --- a/qa.planx-pla.net/portal/gitops.json +++ b/qa.planx-pla.net/portal/gitops.json @@ -18,7 +18,7 @@ "subTitle": "explore, analyze, and share research data", "text": "The Generic Data Commons supports the management, analysis and sharing of many different types of biomedical data for the research community with the goal of accelerating research in the molecular basis for disease and matching targeted therapies that factor in each patient's unique biology.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" } }, "featureFlags": { From 74173a64306586f242fa662de07d1efd2074c130 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:01:01 -0500 Subject: [PATCH 06/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-bih.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-bih.planx-pla.net/portal/gitops.json b/qa-bih.planx-pla.net/portal/gitops.json index c0febc571..57985d676 100644 --- a/qa-bih.planx-pla.net/portal/gitops.json +++ b/qa-bih.planx-pla.net/portal/gitops.json @@ -70,7 +70,7 @@ "text": "The MIDRC BDF Imaging Hub (BIH) is a data hub, which is a federated data search, discovery, and analysis platform that allows researchers to query and analyze data from independent data repositories or resources related to medical imaging.", "contact": "If you have any questions about access or the registration process, please contact ", "contact_link": { - "href": "midrc-support@datacommons.io" + "href": "midrc-support@gen3.org" }, "image": "stage-icons/stage-gene" }, From 98b81fa3badb3613a7dde753f8ccb9fb03093223 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:01:49 -0500 Subject: [PATCH 07/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-acct.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-acct.planx-pla.net/portal/gitops.json b/qa-acct.planx-pla.net/portal/gitops.json index de9e353ff..041fd7b10 100644 --- a/qa-acct.planx-pla.net/portal/gitops.json +++ b/qa-acct.planx-pla.net/portal/gitops.json @@ -144,7 +144,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "This website provides a centralized, cloud-based discovery portal for African American pharmacogenomics data and aims to accelerate discovery of novel genetic variants in African Americans related to clinically actionable cardiovascular phenotypes.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io", + "email": "support@gen3.org", "image": "/../../../../custom/sponsors/gitops-sponsors/gene_br2" }, "categorical9Colors": ["#1a3057", "#C62C2E", "#FEBA00", "#FF8800", "#2E59A2", "#FFD900", "#E76662", "#95B5E5", "#F3B44F"], From 7f8778c7010e4b6c2f32a56a29ec6d0ec97acae9 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:04:46 -0500 Subject: [PATCH 08/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-covid19.planx-pla.net/portal/gitops.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/qa-covid19.planx-pla.net/portal/gitops.json b/qa-covid19.planx-pla.net/portal/gitops.json index 70a3640c5..763365e6f 100644 --- a/qa-covid19.planx-pla.net/portal/gitops.json +++ b/qa-covid19.planx-pla.net/portal/gitops.json @@ -108,7 +108,7 @@ "name": "Documentation" }, { - "link": "support@datacommons.io", + "link": "support@gen3.org", "name": "Email Support" } ] @@ -118,7 +118,7 @@ "subTitle": "Explore, Analyze, and Share Data to Improve Health Outcomes for COVID-19", "text": "", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io", + "email": "support@gen3.org", "image": "/../../../../custom/sponsors/gitops-sponsors/covid_gene" }, "categorical9Colors": [ From e5cd280b6d08d3b0c8bf5e7514ace43991eed768 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:05:31 -0500 Subject: [PATCH 09/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-bloodpac.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-bloodpac.planx-pla.net/portal/gitops.json b/qa-bloodpac.planx-pla.net/portal/gitops.json index 69f3f7b88..dc4c8dabd 100644 --- a/qa-bloodpac.planx-pla.net/portal/gitops.json +++ b/qa-bloodpac.planx-pla.net/portal/gitops.json @@ -151,7 +151,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "This website combines liquid biopsy data from academic, government, and industry partners and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for the treatment and prevention of cancer.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "bpa-support@datacommons.io" + "email": "bpa-support@gen3.org" } }, "featureFlags": { From 94f8f538cadd0ab5d55e091ac8f116736b751fb1 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:06:15 -0500 Subject: [PATCH 10/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-mickey.planx-pla.net/portal/gitops.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/qa-mickey.planx-pla.net/portal/gitops.json b/qa-mickey.planx-pla.net/portal/gitops.json index c58bc2336..4bd5ab7eb 100644 --- a/qa-mickey.planx-pla.net/portal/gitops.json +++ b/qa-mickey.planx-pla.net/portal/gitops.json @@ -47,7 +47,7 @@ "name": "VADC Documentation" }, { - "link": "support@datacommons.io", + "link": "support@gen3.org", "name": "Email Support" } ], @@ -58,7 +58,7 @@ "subTitle": "search, compare, and analyze data", "text": "The VA Data Commons supports the research and analysis of US military Veteran medical and genomic data and aims to accelerate scientific discovery and development of therapies, diagnostic tests, and other technologies for improving the lives of Veterans and beyond.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "systemUse" : { "systemUseTitle" : "VA systems are intended for Academic and Institutional Users", From 731f0c16f4c5d26961742dde922bbe4fc3ad09d8 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:06:54 -0500 Subject: [PATCH 11/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-jcoin.planx-pla.net/portal/gitops.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/qa-jcoin.planx-pla.net/portal/gitops.json b/qa-jcoin.planx-pla.net/portal/gitops.json index f506e1db4..e88ed8efb 100644 --- a/qa-jcoin.planx-pla.net/portal/gitops.json +++ b/qa-jcoin.planx-pla.net/portal/gitops.json @@ -126,7 +126,7 @@ "title": "JCOIN Data Commons", "subTitle": "The JCOIN Data Commons provides the management, analysis, and sharing of JCOIN data to support the JCOIN research community, goals, and vision.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io", + "email": "support@gen3.org", "image": "/../../../../custom/sponsors/gitops-sponsors/bg" }, "footer": { @@ -639,4 +639,4 @@ ], "showArboristAuthzOnProfile": true, "showFenceAuthzOnProfile": false -} \ No newline at end of file +} From ad8ebc2644edaffc08a5189a05c206f88d3270d4 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:07:37 -0500 Subject: [PATCH 12/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-aids.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-aids.planx-pla.net/portal/gitops.json b/qa-aids.planx-pla.net/portal/gitops.json index 5b55b728c..f087bf1d6 100644 --- a/qa-aids.planx-pla.net/portal/gitops.json +++ b/qa-aids.planx-pla.net/portal/gitops.json @@ -137,7 +137,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "The website intercalates government datasets from disciplines within NIAID to create clean, easy to navigate visualizations for data-driven discovery within Allergy and Infectious Diseases.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "footerLogos": [ { From 13e750d3d5a078855fa825ab6acceca05b73c97e Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:08:18 -0500 Subject: [PATCH 13/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-flu.planx-pla.net/portal/gitops.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/qa-flu.planx-pla.net/portal/gitops.json b/qa-flu.planx-pla.net/portal/gitops.json index 7b254b035..e89181788 100644 --- a/qa-flu.planx-pla.net/portal/gitops.json +++ b/qa-flu.planx-pla.net/portal/gitops.json @@ -132,7 +132,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "The website intercalates government datasets from disciplines within NIAID to create clean, easy to navigate visualizations for data-driven discovery within Allergy and Infectious Diseases.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "footerLogos": [ { @@ -339,4 +339,4 @@ ] } } -} \ No newline at end of file +} From 32c607f59eba80c5c8e1ffcab3e34ad912b61616 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:09:06 -0500 Subject: [PATCH 14/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- jenkins-blood.planx-pla.net/portal/gitops.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/jenkins-blood.planx-pla.net/portal/gitops.json b/jenkins-blood.planx-pla.net/portal/gitops.json index a83685657..5143cf997 100644 --- a/jenkins-blood.planx-pla.net/portal/gitops.json +++ b/jenkins-blood.planx-pla.net/portal/gitops.json @@ -155,7 +155,7 @@ "name": "Documentation" }, { - "link": "bpa-support@datacommons.io", + "link": "bpa-support@gen3.org", "name": "Email Support" } ], @@ -166,7 +166,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "This website combines liquid biopsy data from academic, government, and industry partners and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for the treatment and prevention of cancer.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "bpa-support@datacommons.io" + "email": "bpa-support@gen3.org" }, "certs": { "security_quiz": { From 4cd92e2184ed8127a0528706d032a4d499ebcec2 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:09:48 -0500 Subject: [PATCH 15/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-dcfdemo.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-dcfdemo.planx-pla.net/portal/gitops.json b/qa-dcfdemo.planx-pla.net/portal/gitops.json index 9d315df1c..9af560b18 100644 --- a/qa-dcfdemo.planx-pla.net/portal/gitops.json +++ b/qa-dcfdemo.planx-pla.net/portal/gitops.json @@ -113,7 +113,7 @@ "subTitle": "explore, analyze, and share research data", "text": "The Data Common Frameworks (DCF) supports the management, analysis and sharing of many different types of biomedical data for the research community with the goal of accelerating research in the molecular basis for disease and matching targeted therapies that factor in each patient's unique biology.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" } }, "featureFlags": { From 1d880f7c80958a63bef05b06fa3e607239d1d6c0 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:10:28 -0500 Subject: [PATCH 16/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-tb.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-tb.planx-pla.net/portal/gitops.json b/qa-tb.planx-pla.net/portal/gitops.json index 54efdc4fc..e93f26be8 100644 --- a/qa-tb.planx-pla.net/portal/gitops.json +++ b/qa-tb.planx-pla.net/portal/gitops.json @@ -132,7 +132,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "The website intercalates government datasets from disciplines within NIAID to create clean, easy to navigate visualizations for data-driven discovery within Allergy and Infectious Diseases.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "footerLogos": [ { From 697e457d3c5eb926993a116e06edc4a3e117676e Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:11:19 -0500 Subject: [PATCH 17/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-nde.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-nde.planx-pla.net/portal/gitops.json b/qa-nde.planx-pla.net/portal/gitops.json index 72d77c26d..77947928d 100644 --- a/qa-nde.planx-pla.net/portal/gitops.json +++ b/qa-nde.planx-pla.net/portal/gitops.json @@ -148,7 +148,7 @@ "subTitle": "Cross Environment Datasets", "text": "The website combines government datasets from multiple disciplines of NIAID to create clean, easy to navigate visualizations for data-driven discovery within Allergy and Infectious Diseases.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "footerLogos": [ { From e00f279495c8e8381e3019e77ef2d891b52f024d Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:11:58 -0500 Subject: [PATCH 18/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-midrc.planx-pla.net/portal/gitops.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/qa-midrc.planx-pla.net/portal/gitops.json b/qa-midrc.planx-pla.net/portal/gitops.json index 7c2b5975b..279721e5c 100644 --- a/qa-midrc.planx-pla.net/portal/gitops.json +++ b/qa-midrc.planx-pla.net/portal/gitops.json @@ -272,7 +272,7 @@ "name": "Submit Data" }, { - "link": "midrc-support@datacommons.io", + "link": "midrc-support@gen3.org", "name": "Email Support" } ], @@ -283,7 +283,7 @@ "subTitle": "Explore, Analyze, and Share Medical Imaging Data to Improve Patient Outcomes", "text": "", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "midrc-support@datacommons.io", + "email": "midrc-support@gen3.org", "image": "/../../../../custom/sponsors/gitops-sponsors/covid_gene" }, "categorical9Colors": [ From 3672b96e89d122fc9c910c3509fe9d326aef9ef6 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:12:39 -0500 Subject: [PATCH 19/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- jenkins-new.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jenkins-new.planx-pla.net/portal/gitops.json b/jenkins-new.planx-pla.net/portal/gitops.json index de606c361..925c5d6dc 100644 --- a/jenkins-new.planx-pla.net/portal/gitops.json +++ b/jenkins-new.planx-pla.net/portal/gitops.json @@ -111,7 +111,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "This website supports the management, analysis and sharing of human disease data for the research community and aims to advance basic understanding of the genetic basis of complex traits and accelerate discovery and development of therapies, diagnostic tests, and other technologies for diseases like cancer.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "categorical9Colors": ["#035C94", "#7EBAC0", "#AEEBF2", "#E0DD10", "#40476D", "#FFA630", "#AE8799", "#035C94", "#462255"], "categorical2Colors": ["#035C94", "#7EBAC0"] From b28806649ac8352456a46b7acdb06c96c93d4b83 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:13:20 -0500 Subject: [PATCH 20/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-anvil.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-anvil.planx-pla.net/portal/gitops.json b/qa-anvil.planx-pla.net/portal/gitops.json index e20e495b1..64ed13e7d 100644 --- a/qa-anvil.planx-pla.net/portal/gitops.json +++ b/qa-anvil.planx-pla.net/portal/gitops.json @@ -100,7 +100,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "This website supports the management, analysis and sharing of human disease data for the research community and aims to advance basic understanding of the genetic basis of complex traits and accelerate discovery and development of therapies, diagnostic tests, and other technologies for diseases like cancer.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "categorical9Colors": ["#035C94", "#7EBAC0", "#AEEBF2", "#E0DD10", "#40476D", "#FFA630", "#AE8799", "#035C94", "#462255"], "categorical2Colors": ["#035C94", "#7EBAC0"] From febaec237f23c933cc3538bd88641920b70ef994 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:14:34 -0500 Subject: [PATCH 21/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-microbiome.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-microbiome.planx-pla.net/portal/gitops.json b/qa-microbiome.planx-pla.net/portal/gitops.json index 2b5b68aa3..07d3d7a4d 100644 --- a/qa-microbiome.planx-pla.net/portal/gitops.json +++ b/qa-microbiome.planx-pla.net/portal/gitops.json @@ -132,7 +132,7 @@ "subTitle": "Explore, Analyze, and Share Data", "text": "The website intercalates government datasets from disciplines within NIAID to create clean, easy to navigate visualizations for data-driven discovery within Allergy and Infectious Diseases.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" }, "footerLogos": [ { From cfbd1a2a8ed9af166ee4a756a9b45df0bb2c4018 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:15:14 -0500 Subject: [PATCH 22/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- qa-canine.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-canine.planx-pla.net/portal/gitops.json b/qa-canine.planx-pla.net/portal/gitops.json index a709edc2b..3c6fa401a 100644 --- a/qa-canine.planx-pla.net/portal/gitops.json +++ b/qa-canine.planx-pla.net/portal/gitops.json @@ -105,7 +105,7 @@ "subTitle": "explore, analyze, and share research data", "text": "This website analyzes and shares genomic architecture of modern dog breeds and runs analysis for canine cancer to create clean, easy to navigate visualizations for data-driven discovery for canine cancer.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" } }, "featureFlags": { From 74adab38a8d833c6fef441957a73bd56ca43e3c6 Mon Sep 17 00:00:00 2001 From: smvgarcia <111767892+smvgarcia@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:15:56 -0500 Subject: [PATCH 23/32] Update gitops.json - email MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit update all support emails from @datacommons.io to @gen3.org do not merge until gen3.org emails are active. --- jenkins-niaid.planx-pla.net/portal/gitops.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jenkins-niaid.planx-pla.net/portal/gitops.json b/jenkins-niaid.planx-pla.net/portal/gitops.json index a45c6453c..00b53ce16 100644 --- a/jenkins-niaid.planx-pla.net/portal/gitops.json +++ b/jenkins-niaid.planx-pla.net/portal/gitops.json @@ -122,7 +122,7 @@ "subTitle": "search, compare, and download data", "text": "The website combines government datasets from 3 disciplines of NIAID to create clean, easy to navigate visualizations for data-driven discovery within Allergy and Infectious Diseases.", "contact": "If you have any questions about access or the registration process, please contact ", - "email": "support@datacommons.io" + "email": "support@gen3.org" } }, "featureFlags": { From 05370103e04a282d460b1fe32e5771d31b89358e Mon Sep 17 00:00:00 2001 From: Mingfei Shao <2475897+mfshao@users.noreply.github.com> Date: Wed, 21 Aug 2024 11:49:38 -0500 Subject: [PATCH 24/32] update (#2986) --- qa-heal.planx-pla.net/manifest.json | 2 +- qa-heal.planx-pla.net/portal/gitops.json | 6 ++++++ 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/qa-heal.planx-pla.net/manifest.json b/qa-heal.planx-pla.net/manifest.json index 589c9f85c..fac6289c8 100644 --- a/qa-heal.planx-pla.net/manifest.json +++ b/qa-heal.planx-pla.net/manifest.json @@ -15,7 +15,7 @@ "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2024.09", "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2024.09", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", - "frontend-framework": "quay.io/cdis/frontend-framework:0.7.2", + "frontend-framework": "quay.io/cdis/frontend-framework:0.7.3", "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.09", "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.09", "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:0.2.4", diff --git a/qa-heal.planx-pla.net/portal/gitops.json b/qa-heal.planx-pla.net/portal/gitops.json index 9f491a9a1..8abdbee48 100644 --- a/qa-heal.planx-pla.net/portal/gitops.json +++ b/qa-heal.planx-pla.net/portal/gitops.json @@ -9,6 +9,12 @@ "components": { "appName": "HEAL QA Data Commons Portal", "metaDescription": "The HEAL Platform shares data from the NIH HEAL Initiative® with the community of researchers, healthcare providers, community leaders, policy makers, and other stakeholders.", + "banner": [ + { + "type": "warning", + "message": "Our helpdesk has moved! Starting 8/21, please contact us at heal-support@gen3.org" + } + ], "index": { "introduction": { "heading": "Data Commons", From 7654781605f79aacac954cc153bc19fb65ea291f Mon Sep 17 00:00:00 2001 From: Atharva Rane <41084525+atharvar28@users.noreply.github.com> Date: Wed, 21 Aug 2024 19:57:47 -0400 Subject: [PATCH 25/32] remove cohort-middleware and argo service from jenkins-envs (#2987) --- .secrets.baseline | 62 ++++++++++----------- jenkins-blood.planx-pla.net/manifest.json | 7 +-- jenkins-brain.planx-pla.net/manifest.json | 5 -- jenkins-dcp.planx-pla.net/manifest.json | 7 +-- jenkins-genomel.planx-pla.net/manifest.json | 7 +-- jenkins-new-1.planx-pla.net/manifest.json | 7 +-- jenkins-new-2.planx-pla.net/manifest.json | 7 +-- jenkins-new-3.planx-pla.net/manifest.json | 7 +-- jenkins-new-4.planx-pla.net/manifest.json | 7 +-- jenkins-new.planx-pla.net/manifest.json | 7 +-- jenkins-niaid.planx-pla.net/manifest.json | 7 +-- 11 files changed, 40 insertions(+), 90 deletions(-) diff --git a/.secrets.baseline b/.secrets.baseline index 249af4d47..8d652ee10 100644 --- a/.secrets.baseline +++ b/.secrets.baseline @@ -141,21 +141,21 @@ "filename": "jenkins-blood.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 75 + "line_number": 73 }, { "type": "Secret Keyword", "filename": "jenkins-blood.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 243 + "line_number": 241 }, { "type": "Secret Keyword", "filename": "jenkins-blood.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 249 + "line_number": 247 } ], "jenkins-brain.planx-pla.net/manifest.json": [ @@ -164,21 +164,21 @@ "filename": "jenkins-brain.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 89 + "line_number": 87 }, { "type": "Secret Keyword", "filename": "jenkins-brain.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 257 + "line_number": 255 }, { "type": "Secret Keyword", "filename": "jenkins-brain.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 263 + "line_number": 261 } ], "jenkins-dcp.planx-pla.net/manifest.json": [ @@ -187,21 +187,21 @@ "filename": "jenkins-dcp.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 85 + "line_number": 83 }, { "type": "Secret Keyword", "filename": "jenkins-dcp.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 253 + "line_number": 251 }, { "type": "Secret Keyword", "filename": "jenkins-dcp.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 259 + "line_number": 257 } ], "jenkins-genomel.planx-pla.net/manifest.json": [ @@ -210,21 +210,21 @@ "filename": "jenkins-genomel.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 93 + "line_number": 91 }, { "type": "Secret Keyword", "filename": "jenkins-genomel.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 261 + "line_number": 259 }, { "type": "Secret Keyword", "filename": "jenkins-genomel.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 267 + "line_number": 265 } ], "jenkins-new-1.planx-pla.net/manifest.json": [ @@ -233,21 +233,21 @@ "filename": "jenkins-new-1.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 85 + "line_number": 83 }, { "type": "Secret Keyword", "filename": "jenkins-new-1.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 253 + "line_number": 251 }, { "type": "Secret Keyword", "filename": "jenkins-new-1.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 259 + "line_number": 257 } ], "jenkins-new-2.planx-pla.net/manifest.json": [ @@ -256,21 +256,21 @@ "filename": "jenkins-new-2.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 85 + "line_number": 83 }, { "type": "Secret Keyword", "filename": "jenkins-new-2.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 253 + "line_number": 251 }, { "type": "Secret Keyword", "filename": "jenkins-new-2.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 259 + "line_number": 257 } ], "jenkins-new-3.planx-pla.net/manifest.json": [ @@ -279,21 +279,21 @@ "filename": "jenkins-new-3.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 85 + "line_number": 83 }, { "type": "Secret Keyword", "filename": "jenkins-new-3.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 253 + "line_number": 251 }, { "type": "Secret Keyword", "filename": "jenkins-new-3.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 259 + "line_number": 257 } ], "jenkins-new-4.planx-pla.net/manifest.json": [ @@ -302,21 +302,21 @@ "filename": "jenkins-new-4.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 85 + "line_number": 83 }, { "type": "Secret Keyword", "filename": "jenkins-new-4.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 253 + "line_number": 251 }, { "type": "Secret Keyword", "filename": "jenkins-new-4.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 259 + "line_number": 257 } ], "jenkins-new.planx-pla.net/manifest.json": [ @@ -325,21 +325,21 @@ "filename": "jenkins-new.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 85 + "line_number": 83 }, { "type": "Secret Keyword", "filename": "jenkins-new.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 253 + "line_number": 251 }, { "type": "Secret Keyword", "filename": "jenkins-new.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 259 + "line_number": 257 } ], "jenkins-niaid.planx-pla.net/manifest.json": [ @@ -348,21 +348,21 @@ "filename": "jenkins-niaid.planx-pla.net/manifest.json", "hashed_secret": "7120244dce59930b75711144fda4b1f6d78e4865", "is_verified": false, - "line_number": 95 + "line_number": 93 }, { "type": "Secret Keyword", "filename": "jenkins-niaid.planx-pla.net/manifest.json", "hashed_secret": "0447a636536df0264b2000403fbefd69f603ceb1", "is_verified": false, - "line_number": 263 + "line_number": 261 }, { "type": "Secret Keyword", "filename": "jenkins-niaid.planx-pla.net/manifest.json", "hashed_secret": "ca253d1c9dece2da0d6fb24ded7bdb849a475966", "is_verified": false, - "line_number": 269 + "line_number": 267 } ], "qa-anvil.planx-pla.net/manifest.json": [ @@ -7620,5 +7620,5 @@ } ] }, - "generated_at": "2024-05-15T19:32:12Z" + "generated_at": "2024-08-21T20:16:57Z" } diff --git a/jenkins-blood.planx-pla.net/manifest.json b/jenkins-blood.planx-pla.net/manifest.json index 8b9fbf9fe..9781bb005 100644 --- a/jenkins-blood.planx-pla.net/manifest.json +++ b/jenkins-blood.planx-pla.net/manifest.json @@ -32,9 +32,7 @@ "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "sower": [ { @@ -358,8 +356,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-brain.planx-pla.net/manifest.json b/jenkins-brain.planx-pla.net/manifest.json index 3556e948b..668064a77 100644 --- a/jenkins-brain.planx-pla.net/manifest.json +++ b/jenkins-brain.planx-pla.net/manifest.json @@ -9,11 +9,9 @@ "versions": { "ambassador": "quay.io/datawire/ambassador:1.4.2", "arborist": "quay.io/cdis/arborist:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", "audit-service": "quay.io/cdis/audit-service:master", "aws-es-proxy": "quay.io/cdis/aws-es-proxy:v1.3.1", "awshelper": "quay.io/cdis/awshelper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master", "fence": "quay.io/cdis/fence:master", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", "indexd": "quay.io/cdis/indexd:master", @@ -355,8 +353,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-dcp.planx-pla.net/manifest.json b/jenkins-dcp.planx-pla.net/manifest.json index fa91e3642..71c5e6575 100644 --- a/jenkins-dcp.planx-pla.net/manifest.json +++ b/jenkins-dcp.planx-pla.net/manifest.json @@ -32,9 +32,7 @@ "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "arborist": { "deployment_version": "2" @@ -351,8 +349,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-genomel.planx-pla.net/manifest.json b/jenkins-genomel.planx-pla.net/manifest.json index bc81fbacd..d30bf69d9 100644 --- a/jenkins-genomel.planx-pla.net/manifest.json +++ b/jenkins-genomel.planx-pla.net/manifest.json @@ -32,9 +32,7 @@ "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "arborist": { "deployment_version": "2" @@ -359,8 +357,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-new-1.planx-pla.net/manifest.json b/jenkins-new-1.planx-pla.net/manifest.json index b1b881388..e0c6be9c6 100644 --- a/jenkins-new-1.planx-pla.net/manifest.json +++ b/jenkins-new-1.planx-pla.net/manifest.json @@ -32,9 +32,7 @@ "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "arborist": { "deployment_version": "2" @@ -355,8 +353,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-new-2.planx-pla.net/manifest.json b/jenkins-new-2.planx-pla.net/manifest.json index 85b9faf32..05f0a011f 100644 --- a/jenkins-new-2.planx-pla.net/manifest.json +++ b/jenkins-new-2.planx-pla.net/manifest.json @@ -32,9 +32,7 @@ "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "arborist": { "deployment_version": "2" @@ -355,8 +353,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-new-3.planx-pla.net/manifest.json b/jenkins-new-3.planx-pla.net/manifest.json index 008af144f..35b7b3b19 100644 --- a/jenkins-new-3.planx-pla.net/manifest.json +++ b/jenkins-new-3.planx-pla.net/manifest.json @@ -31,10 +31,8 @@ "metadata": "quay.io/cdis/metadata-service:master", "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "arborist": { "deployment_version": "2" @@ -355,8 +353,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-new-4.planx-pla.net/manifest.json b/jenkins-new-4.planx-pla.net/manifest.json index a8aa5821b..3f1e96b5b 100644 --- a/jenkins-new-4.planx-pla.net/manifest.json +++ b/jenkins-new-4.planx-pla.net/manifest.json @@ -32,9 +32,7 @@ "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "arborist": { "deployment_version": "2" @@ -355,8 +353,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-new.planx-pla.net/manifest.json b/jenkins-new.planx-pla.net/manifest.json index 87b7d8200..27af8700f 100644 --- a/jenkins-new.planx-pla.net/manifest.json +++ b/jenkins-new.planx-pla.net/manifest.json @@ -32,9 +32,7 @@ "dashboard": "quay.io/cdis/gen3-statics:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "arborist": { "deployment_version": "2" @@ -355,8 +353,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } diff --git a/jenkins-niaid.planx-pla.net/manifest.json b/jenkins-niaid.planx-pla.net/manifest.json index 75429a505..ff3bfe0b0 100644 --- a/jenkins-niaid.planx-pla.net/manifest.json +++ b/jenkins-niaid.planx-pla.net/manifest.json @@ -31,9 +31,7 @@ "metadata": "quay.io/cdis/metadata-service:master", "requestor": "quay.io/cdis/requestor:master", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:master", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master", - "argo-wrapper": "quay.io/cdis/argo-wrapper:master", - "cohort-middleware": "quay.io/cdis/cohort-middleware:master" + "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:master" }, "portal": { "GEN3_BUNDLE": "nct" @@ -361,8 +359,5 @@ "guppy": { "strategy": "auto" } - }, - "argo": { - "argo_server_service_url": "http://argo-argo-workflows-server.argo.svc.cluster.local:2746" } } From 9328969336ed3e4e87baba88b5de15aa454fb670 Mon Sep 17 00:00:00 2001 From: Mingfei Shao <2475897+mfshao@users.noreply.github.com> Date: Fri, 23 Aug 2024 14:39:11 -0500 Subject: [PATCH 26/32] Update gitops.json migrate to zendesk --- qa-heal.planx-pla.net/portal/gitops.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/qa-heal.planx-pla.net/portal/gitops.json b/qa-heal.planx-pla.net/portal/gitops.json index 8abdbee48..7e94e3908 100644 --- a/qa-heal.planx-pla.net/portal/gitops.json +++ b/qa-heal.planx-pla.net/portal/gitops.json @@ -631,8 +631,8 @@ } } }, - "kayakoConfig": { - "kayakoDepartmentId": 21 + "zendeskConfig": { + "zendeskSubdomainName": "heal-support" } } } From 2f4b9e9eae63e5e0a3db443f58478cba234e0012 Mon Sep 17 00:00:00 2001 From: Mingfei Shao <2475897+mfshao@users.noreply.github.com> Date: Fri, 23 Aug 2024 14:45:27 -0500 Subject: [PATCH 27/32] Update manifest.json remove uneedded service --- qa-heal.planx-pla.net/manifest.json | 1 - 1 file changed, 1 deletion(-) diff --git a/qa-heal.planx-pla.net/manifest.json b/qa-heal.planx-pla.net/manifest.json index fac6289c8..f24fed5d0 100644 --- a/qa-heal.planx-pla.net/manifest.json +++ b/qa-heal.planx-pla.net/manifest.json @@ -18,7 +18,6 @@ "frontend-framework": "quay.io/cdis/frontend-framework:0.7.3", "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.09", "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.09", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:0.2.4", "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.09", "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.09", "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.09", From 542c785d225417b6ba472d2c87e44ed4ec1cf0dc Mon Sep 17 00:00:00 2001 From: Mingfei Shao <2475897+mfshao@users.noreply.github.com> Date: Fri, 23 Aug 2024 14:52:28 -0500 Subject: [PATCH 28/32] Update manifest.json update service --- qa-heal.planx-pla.net/manifest.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/qa-heal.planx-pla.net/manifest.json b/qa-heal.planx-pla.net/manifest.json index f24fed5d0..a3f3406fa 100644 --- a/qa-heal.planx-pla.net/manifest.json +++ b/qa-heal.planx-pla.net/manifest.json @@ -13,12 +13,12 @@ "aws-es-proxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/aws-es-proxy:v1.3.1", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:0.5.0", "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2024.09", - "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2024.09", + "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:feat_aws-requesterpays", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", "frontend-framework": "quay.io/cdis/frontend-framework:0.7.3", "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.09", "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.09", - "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.09", + "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:0.5.2", "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.09", "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.09", "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:feat_cde-submission", From a14f19cf32be6a3b12992402a2eca64238c9e1cc Mon Sep 17 00:00:00 2001 From: PlanXCyborg <38964842+PlanXCyborg@users.noreply.github.com> Date: Mon, 26 Aug 2024 08:34:44 -0700 Subject: [PATCH 29/32] Gen3 Monthly Release 2024.08 qa-brh.planx-pla.net 1723494927 (#2977) * apply version 2024.08 to qa-brh.planx-pla.net * apply version 2024.08 to qa-brh.planx-pla.net --- qa-brh.planx-pla.net/manifest.json | 28 +++++++++---------- .../manifests/hatchery/hatchery.json | 2 +- 2 files changed, 15 insertions(+), 15 deletions(-) diff --git a/qa-brh.planx-pla.net/manifest.json b/qa-brh.planx-pla.net/manifest.json index c8e164859..801312524 100644 --- a/qa-brh.planx-pla.net/manifest.json +++ b/qa-brh.planx-pla.net/manifest.json @@ -8,22 +8,22 @@ }, "versions": { "ambassador": "quay.io/datawire/ambassador:1.4.2", - "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2024.05", + "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2024.08", "aws-es-proxy": "quay.io/cdis/aws-es-proxy:v1.3.1", - "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2024.05", - "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2024.05", + "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2024.08", + "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2024.08", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", - "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:master", - "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.05", + "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.08", + "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.08", "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:0.2.0", - "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.05", - "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.05", - "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.05", - "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2024.05", - "requestor": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/requestor:2024.05", - "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2024.05", - "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2024.05", - "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2024.05" + "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.08", + "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.08", + "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.08", + "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2024.08", + "requestor": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/requestor:2024.08", + "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2024.08", + "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2024.08", + "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2024.08" }, "arborist": { "deployment_version": "2" @@ -92,4 +92,4 @@ "targetCpu": 40 } } -} +} \ No newline at end of file diff --git a/qa-brh.planx-pla.net/manifests/hatchery/hatchery.json b/qa-brh.planx-pla.net/manifests/hatchery/hatchery.json index f8ffbbca4..fe5d8ea84 100755 --- a/qa-brh.planx-pla.net/manifests/hatchery/hatchery.json +++ b/qa-brh.planx-pla.net/manifests/hatchery/hatchery.json @@ -11,7 +11,7 @@ "sidecar": { "cpu-limit": "1.0", "memory-limit": "256Mi", - "image": "quay.io/cdis/ecs-ws-sidecar:2024.05", + "image": "quay.io/cdis/ecs-ws-sidecar:2024.08", "env": { "NAMESPACE": "qa-brh", "HOSTNAME": "qa-brh.planx-pla.net" From 86ce339250b7bb2e7797c300b1b608041eafaa70 Mon Sep 17 00:00:00 2001 From: Mingfei Shao <2475897+mfshao@users.noreply.github.com> Date: Mon, 26 Aug 2024 10:54:39 -0500 Subject: [PATCH 30/32] Update manifest.json (#2988) * Update manifest.json * Update gitops.json --- qa-brh.planx-pla.net/manifest.json | 5 ++--- qa-brh.planx-pla.net/portal/gitops.json | 6 +++--- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/qa-brh.planx-pla.net/manifest.json b/qa-brh.planx-pla.net/manifest.json index 801312524..3818adeaf 100644 --- a/qa-brh.planx-pla.net/manifest.json +++ b/qa-brh.planx-pla.net/manifest.json @@ -15,11 +15,10 @@ "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.08", "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2024.08", - "kayako-wrapper": "quay.io/cdis/kayako-wrapper-service:0.2.0", "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.08", "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.08", "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.08", - "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2024.08", + "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:5.32.0", "requestor": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/requestor:2024.08", "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2024.08", "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2024.08", @@ -92,4 +91,4 @@ "targetCpu": 40 } } -} \ No newline at end of file +} diff --git a/qa-brh.planx-pla.net/portal/gitops.json b/qa-brh.planx-pla.net/portal/gitops.json index 74da1836a..14eaf6001 100644 --- a/qa-brh.planx-pla.net/portal/gitops.json +++ b/qa-brh.planx-pla.net/portal/gitops.json @@ -178,7 +178,7 @@ "enabled": true, "menuText": "Not Accessible" }, - "pending": { + "waiting": { "enabled": false }, "notAvailable": { @@ -501,8 +501,8 @@ } } }, - "kayakoConfig": { - "kayakoDepartmentId": 22 + "zendeskConfig": { + "zendeskSubdomainName": "brh-support" } } } From 35df5f43e00c2a5cc07172b8f2f109e5a1e61419 Mon Sep 17 00:00:00 2001 From: Mingfei Shao <2475897+mfshao@users.noreply.github.com> Date: Tue, 27 Aug 2024 10:31:55 -0500 Subject: [PATCH 31/32] Update manifest.json --- qa-brh.planx-pla.net/manifest.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-brh.planx-pla.net/manifest.json b/qa-brh.planx-pla.net/manifest.json index 3818adeaf..40ca69f44 100644 --- a/qa-brh.planx-pla.net/manifest.json +++ b/qa-brh.planx-pla.net/manifest.json @@ -18,7 +18,7 @@ "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2024.08", "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2024.08", "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2024.08", - "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:5.32.0", + "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:5.32.1", "requestor": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/requestor:2024.08", "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2024.08", "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2024.08", From a48700bfe2948ac37d8be022057ac3c48e42784f Mon Sep 17 00:00:00 2001 From: Mingfei Shao <2475897+mfshao@users.noreply.github.com> Date: Tue, 27 Aug 2024 15:25:14 -0500 Subject: [PATCH 32/32] Update manifest.json --- qa-heal.planx-pla.net/manifest.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/qa-heal.planx-pla.net/manifest.json b/qa-heal.planx-pla.net/manifest.json index a3f3406fa..72f5aef8d 100644 --- a/qa-heal.planx-pla.net/manifest.json +++ b/qa-heal.planx-pla.net/manifest.json @@ -13,7 +13,7 @@ "aws-es-proxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/aws-es-proxy:v1.3.1", "cedar-wrapper": "quay.io/cdis/cedar-wrapper-service:0.5.0", "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2024.09", - "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:feat_aws-requesterpays", + "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:10.3.0", "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.15.3-debian-cloudwatch-1.0", "frontend-framework": "quay.io/cdis/frontend-framework:0.7.3", "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2024.09",