From eeefd9e6cc8ae5357c09432fad8a3f1339c93f24 Mon Sep 17 00:00:00 2001 From: Chris Date: Fri, 17 Jan 2025 10:30:47 -0600 Subject: [PATCH] updates to BIH Staging ETL --- bihstaging.data-commons.org/etlMapping.yaml | 25 +++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/bihstaging.data-commons.org/etlMapping.yaml b/bihstaging.data-commons.org/etlMapping.yaml index 2836512861..7e22cbe2b4 100644 --- a/bihstaging.data-commons.org/etlMapping.yaml +++ b/bihstaging.data-commons.org/etlMapping.yaml @@ -1,4 +1,29 @@ mappings: + - name: bih_subject + doc_type: subject + type: aggregator + root: subject + props: + - name: project_id + - name: submitter_id + - name: race + parent_props: + - path: datasets[collection_id,commons_long_name,commons_name,data_contributor,data_host,data_url_doi,disease_type,license,metadata_source_api,metadata_source_version,primary_site] + - name: bih_imaging_study + doc_type: imaging_study + type: aggregator + root: imaging_study + props: + - name: project_id + - name: submitter_id + - name: StudyDescription + - name: StudyInstanceUID + - name: PatientAge + - name: PatientSex + - name: PatientID + - name: EthnicGroup + parent_props: + - path: subjects[race,subject_id:submitter_id].datasets[collection_id,commons_long_name,commons_name,data_contributor,data_host,data_url_doi,disease_type,license,metadata_source_api,metadata_source_version,primary_site] - name: bih_imaging_series doc_type: imaging_series type: aggregator