first drafts of screenshot script

.gitignore

@@ -70,4 +70,9 @@ media/
 **/.certificates/**
 *.pem
 
-etc/.rosalution-db-backups
+etc/.rosalution-db-backups
+
+
+*.env
+
+**/rosalution-screenshot-annotations/**

etc/database/screenshot-datasets-automate/requirements.txt

@@ -0,0 +1,3 @@
+selenium==4.23.1
+requests==2.32.3
+python-dotenv==1.0.1

etc/database/screenshot-datasets-automate/screenshot-annotate.py

@@ -0,0 +1,55 @@
+from selenium import webdriver
+from selenium.webdriver.chrome.options import Options
+from selenium.webdriver.common.by import By
+import time
+import os
+from datetime import datetime
+from dotenv import dotenv_values
+
+import requests
+
+config = dotenv_values('.env')
+
+
+
+#@ https://local.rosalution.cgds/rosalution/api/analysis/CPAM0002/genomic_units
+
+# Get the current timestamp for the image name
+today = datetime.now()
+image_name = today.strftime("%Y-%m-%d %H:%M:%S")
+
+# Set the path where the screenshot will be saved
+path = os.path.dirname(os.path.abspath(__file__))
+
+# Configure Chrome WebDriver options
+options = Options()
+options.add_argument("--window-size=1920,1080")
+options.add_argument("--start-maximized")
+options.add_argument("--headless")
+options.add_argument("--disable-gpu")
+
+# Initialize the Chrome WebDriver
+driver = webdriver.Chrome(options=options)
+driver.maximize_window()
+
+
+
+
+driver.get("https://gtexportal.org/home/gene/CEP104")
+
+time.sleep(1)
+
+width = driver.execute_script("return Math.max( document.body.scrollWidth, document.body.offsetWidth, document.documentElement.clientWidth, document.documentElement.scrollWidth, document.documentElement.offsetWidth );")
+height = driver.execute_script("return Math.max( document.body.scrollHeight, document.body.offsetHeight, document.documentElement.clientHeight, document.documentElement.scrollHeight, document.documentElement.offsetHeight );")
+
+driver.set_window_size(width, height)
+
+full_page = driver.find_element(By.ID, "gene-expr-vplot")
+full_page.screenshot(f"{image_name}.png")
+
+# Close the browser window
+driver.quit()
+
+
+
+# Get genomic units from the analysis

etc/database/screenshot-datasets-automate/setup-env.sh

@@ -0,0 +1,8 @@
+python3 -m venv rosalution-screenshot-annotations
+source rosalution-screenshot-annotations/bin/activate
+
+# install requirements
+pip3 install -r requirements.txt
+
+# deactivate venv and return to root directory
+deactivate