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visualize_graphs_quality.py
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from time import time
from tqdm import tqdm
from joblib import Parallel, delayed
import glob
import argparse
import logging
import os
import itertools
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns
import anonygraph.utils.visualization as vutils
import anonygraph.utils.runner as rutils
import anonygraph.utils.data as dutils
import anonygraph.utils.path as putils
import anonygraph.utils.general as utils
import anonygraph.time_graph_generators as generators
import anonygraph.algorithms.clustering as calgo
import anonygraph.algorithms as algo
import anonygraph.evaluation.subgraphs_metrics as metrics
from anonygraph.constants import *
logging.getLogger("matplotlib").setLevel(logging.WARNING)
logger = logging.getLogger(__name__)
def add_arguments(parser):
rutils.add_data_argument(parser)
rutils.add_sequence_data_argument(parser)
parser.add_argument("--anony_mode")
rutils.add_workers_argument(parser)
rutils.add_log_argument(parser)
parser.add_argument("--type")
parser.add_argument("--refresh", type=rutils.str2bool)
def add_more_info(df):
df["ratio_fake_edges"] = df[FAKE_EDGES_METRIC
] / df[ANONYMIZED_EDGES_METRIC]
df["ratio_fake_entities"] = df[FAKE_ENTITIES_METRIC
] / df[ANONYMIZED_ENTITIES_METRIC]
df[r"$\tau$"] = df["max_dist"]
df["calgo_k"] = df["calgo"] + "_" + df["k"].astype(str)
df["enforcer_name"].replace("gs", "merge_split", inplace=True)
df["enforcer_name"].replace("ir", "invalid_removal", inplace=True)
df["calgo_enforcer"] = df["calgo"] + "#" + df["enforcer_name"]
df["t"] = df["t"] + 1
df["ratio_fake_removed_entities"] = (df[FAKE_ENTITIES_METRIC] + df[REMOVED_ENTITIES_METRIC])/df[RAW_ENTITIES_METRIC]
df["ratio_fake_removed_edges"] = (df[FAKE_EDGES_METRIC] + df[REMOVED_EDGES_METRIC]) / df[RAW_EDGES_METRIC]
df["reset_w_name"] = df["reset_w"]
df.loc[df["reset_w"] == -1, "reset_w_name"] = "No Reset"
logger.debug(df["reset_w_name"].unique())
# raise Exception()
def visualize_fine_tune(
df, w_values, k_values,l_values, max_dist_values, reset_w_values, enforcer_values, calgo_values, y_name, x_name, cat_name, path=None
):
logger.info("visualize x: {} - y: {} - cat: {}".format(x_name, y_name, cat_name))
logger.debug("df (len: {}): {}".format(len(df), df))
df.sort_values(by=["calgo", "enforcer", "k", "l", "reset_w", "max_dist", "t"], inplace=True)
df = df[(df["w"].isin(w_values)) & (df["k"].isin(k_values)) &
(df["max_dist"].isin(max_dist_values)) & (df["l"].isin(l_values))
& (df["reset_w"].isin(reset_w_values))
& (df["enforcer"].isin(enforcer_values))
& (df["calgo"].isin(calgo_values))
]
w_values = df["w"].unique()
t_values = df["t"].unique()
k_values = df["k"].unique()
l_values = df["l"].unique()
max_dist_values = df["max_dist"].unique()
reset_w_values = df["reset_w"].unique()
enforcer_name_values = df["enforcer_name"].unique()
calgo_names = df["calgo"].unique()
x_values = df[x_name].unique()
calgo_k_values = df["calgo_k"].unique()
cat_values = df[cat_name].unique()
logger.debug("visualizing filtered df (len: {}): {}".format(len(df), df[[x_name, y_name, cat_name]]))
logger.debug("w values: {}".format(w_values))
logger.debug("t values: {}".format(t_values))
logger.debug("k values: {}".format(k_values))
logger.debug("l values: {}".format(l_values))
logger.debug("max_dist values: {}".format(max_dist_values))
logger.debug("reset_w values: {}".format(reset_w_values))
logger.debug("enforcer values: {}".format(enforcer_name_values))
logger.debug("calgo_names: {}".format(calgo_names))
logger.debug("calgo_k_values: {}".format(calgo_k_values))
num_cat_values = len(df[cat_name].unique())
current_palette = sns.color_palette(n_colors=num_cat_values, palette="bright")
sns.lineplot(
data=df, x=x_name, y=y_name,
hue=cat_name,
style=cat_name,
palette=current_palette,
legend=False,
)
plt.ylabel(vutils.get_title(y_name))
plt.grid(linestyle="--")
plt.xticks(vutils.get_xticks(x_name, x_values, 8))
plt.legend(title=vutils.get_title(cat_name), labels=cat_values)
if path is not None:
if not os.path.exists(os.path.dirname(path)):
os.makedirs(os.path.dirname(path))
plt.savefig(path)
logger.info("saved to {}".format(path))
plt.show()
plt.clf()
def get_name(name):
short2full_name = {
"km": "k-Medoids",
"hdbscan": "HDBSCAN",
"gs": "Merge_Split",
"ir": "Invalid-Removal",
"adm": "AIL",
"radm": "RAIL",
}
return short2full_name[name]
def visualize_k_table(df, k_values, l_values, max_dist_values, calgo_values, reset_w_values, enforcer_values, metric_names, col_name, path):
df = df[
(df["k"].isin(k_values))
& (df["l"].isin(l_values))
& (df["max_dist"].isin(max_dist_values))
& (df["reset_w"].isin(reset_w_values))
& (df["calgo"].isin(calgo_values))
& (df["enforcer"].isin(enforcer_values))
]
t_modes = ["1", "2..20"]
col_values = df[col_name].unique()
# metric_names = ["adm", "radm"]
with open(path, "w") as f:
for col_value in col_values:
current_df = df[df[col_name] == col_value]
line_splits = [col_value]
for t_mode in t_modes:
if t_mode == "1":
t_df = current_df[current_df["t"] == 1]
elif t_mode == "2..20":
t_df = current_df[current_df["t"] != 1]
else:
raise Exception(t_mode)
for metric_name in metric_names:
if t_mode == "1":
metric_value = t_df[metric_name].values[0]
elif t_mode == "2..20":
metric_value = t_df[metric_name].mean()
else:
raise Exception(t_mode)
line_splits.append("{:10.4f}".format(metric_value))
logger.debug("{}, {}, {}, {}".format(col_value, t_mode, metric_name, metric_value))
logger.debug(line_splits)
line_str = " & ".join(map(str, line_splits))
f.write("{}\\\\ \n".format(line_str))
def visualize_calgo_table(df, path):
w_values = [-1]
reset_w_values = [-1]
k_values = [2]
l_values = [1]
max_dist_values = [1]
enforcer_values = ["ir", "gs"]
calgo_values = ["km", "hdbscan"]
metric_names = ["adm", "radm"]
df.sort_values(by=["calgo", "enforcer", "k", "l", "reset_w", "max_dist", "t"], inplace=True)
df = df[(df["w"].isin(w_values)) & (df["k"].isin(k_values)) &
(df["max_dist"].isin(max_dist_values)) & (df["l"].isin(l_values))
& (df["reset_w"].isin(reset_w_values))
# & (df["enforcer"].isin(enforcer_values))
# & (df["calgo"].isin(calgo_values))
]
result = ""
t_modes = ["1", "2..20"]
with open(path, "w") as f:
for enforcer in enforcer_values:
enforcer_df = df[df["enforcer"] == enforcer]
enforcer_name = get_name(enforcer)
enforcer_str = "\multirow{{2}}{{*}}{}".format(enforcer_name)
for t_mode in t_modes:
line_splits = []
if t_mode == "1":
t_df = enforcer_df[enforcer_df["t"] == 1]
line_splits.append(enforcer_str)
elif t_mode == "2..20":
t_df = enforcer_df[enforcer_df["t"] != 1]
line_splits.append("")
else:
raise Exception("Unsupported t_mode: {}".format(t_mode))
line_splits.append(t_mode)
for calgo in calgo_values:
calgo_name = get_name(calgo)
calgo_df = t_df[t_df["calgo"] == calgo]
for metric_name in metric_names:
metric_full_name = get_name(metric_name)
if t_mode == "1":
metric_value = calgo_df[metric_name].values[0]
else:
avg_df = calgo_df[["t", metric_name]]
# logger.debug("avg_df (len: {}): {}".format(len(avg_df), avg_df[metric_name]))
metric_value = avg_df[metric_name].mean()
# logger.debug("avg: {}".format(avg_df[metric_name].mean()))
logger.debug("{} & {} & {} & {} & {}".format(enforcer_name, t_mode, calgo_name, metric_full_name, metric_value))
line_splits.append("{:10.4f}".format(metric_value))
logger.debug(line_splits)
line_str = " & ".join(map(str, line_splits))
logger.debug(line_str)
f.write("{}\n".format(line_str))
print(result)
def visualize_figures(df, strategy_str, metric_names, fig_dir_path):
for metric in metric_names:
fig_path = os.path.join(fig_dir_path, "{}-{}-t-calgo_enforcer.pdf".format(strategy_str, metric))
visualize_fine_tune(
df=df,
w_values=[-1],
k_values=[2],
l_values=[1],
max_dist_values=[1],
reset_w_values=[-1],
enforcer_values=[GREEDY_SPLIT_ENFORCER, INVALID_REMOVAL_ENFORCER],
calgo_values=["km", "hdbscan"],
x_name="t",
y_name=metric,
cat_name="calgo_enforcer",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-{}-t-calgo.pdf".format(strategy_str, metric))
visualize_fine_tune(
df=df,
w_values=[-1],
k_values=[2],
l_values=[1],
max_dist_values=[1],
reset_w_values=[-1],
enforcer_values=[GREEDY_SPLIT_ENFORCER],
calgo_values=["km", "hdbscan"],
x_name="t",
y_name=metric,
cat_name="calgo",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-{}-t-k.pdf".format(strategy_str, metric))
visualize_fine_tune(
df=df,
w_values=[-1],
k_values=[2, 4, 6, 8, 10],
l_values=[1],
max_dist_values=[1],
reset_w_values=[-1],
enforcer_values=[GREEDY_SPLIT_ENFORCER],
calgo_values=["km"],
x_name="t",
y_name=metric,
cat_name="k",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-{}-t-l.pdf".format(strategy_str, metric))
visualize_fine_tune(
df=df,
w_values=[-1],
k_values=[10],
l_values=[1, 2, 3, 4],
max_dist_values=[1],
reset_w_values=[-1],
enforcer_values=[GREEDY_SPLIT_ENFORCER],
calgo_values=["km"],
x_name="t",
y_name=metric,
cat_name="l",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-{}-t-resetw.pdf".format(strategy_str, metric))
visualize_fine_tune(
df=df,
w_values=[-1],
k_values=[10],
l_values=[4],
max_dist_values=[1],
reset_w_values=[-1, 1, 2, 4, 5],
enforcer_values=[GREEDY_SPLIT_ENFORCER],
calgo_values=["km"],
x_name="t",
y_name=metric,
cat_name="reset_w_name",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-{}-t-tau.pdf".format(strategy_str, metric))
visualize_fine_tune(
df=df,
w_values=[-1],
k_values=[10],
l_values=[4],
max_dist_values=[0, 0.25, 0.5, 0.75, 1],
reset_w_values=[-1],
enforcer_values=[GREEDY_SPLIT_ENFORCER],
calgo_values=["km"],
x_name="t",
y_name=metric,
cat_name="max_dist",
path=fig_path
)
def visualize_tables(df, strategy_str, metric_names, fig_dir_path):
# col_names = ["k", "l", "max_dist", "reset_w"]
df.sort_values(by=["calgo", "enforcer", "k", "l", "reset_w", "max_dist", "t"], inplace=True)
fig_path = os.path.join(fig_dir_path, "{}-calgo.tex".format(strategy_str))
visualize_calgo_table(df, fig_path)
fig_path = os.path.join(fig_dir_path, "{}-k.tex".format(strategy_str))
visualize_k_table(
df=df,
k_values=[2,4,6,8,10],
l_values=[1],
max_dist_values=[1],
reset_w_values=[-1],
calgo_values=["km"],
enforcer_values=["gs"],
metric_names=["adm", "radm"],
col_name="k",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-l.tex".format(strategy_str))
visualize_k_table(
df=df,
k_values=[10],
l_values=[1, 2, 3, 4],
max_dist_values=[1],
reset_w_values=[-1],
calgo_values=["km"],
enforcer_values=["gs"],
metric_names=["adm", "radm"],
col_name="l",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-tau.tex".format(strategy_str))
visualize_k_table(
df=df,
k_values=[10],
l_values=[4],
max_dist_values=[0, 0.25, 0.5, 0.75, 1],
reset_w_values=[-1],
calgo_values=["km"],
enforcer_values=["gs"],
metric_names=["adm", "radm"],
col_name="max_dist",
path=fig_path
)
fig_path = os.path.join(fig_dir_path, "{}-resetw.tex".format(strategy_str))
visualize_k_table(
df=df,
k_values=[10],
l_values=[4],
max_dist_values=[1],
reset_w_values=[-1, 1, 2, 3, 4],
calgo_values=["km"],
enforcer_values=["gs"],
metric_names=["adm", "radm"],
col_name="reset_w",
path=fig_path
)
def main(args):
data_name = args["data"]
logger.debug(args)
data_path = putils.get_tuning_graphs_exp_data_path(
args["data"], args["sample"], args["strategy"], args
)
df = vutils.get_exp_data(
exp_path=data_path,
prepare_data_fn=vutils.prepare_anonymized_subgraphs_data,
prepare_data_args={
"data": args["data"],
"sample": args["sample"],
"strategy": args["strategy"],
"anony_mode": CLUSTERS_AND_GRAPH_ANONYMIZATION_MODE,
},
workers=args["workers"],
refresh=args["refresh"],
args=args
)
add_more_info(df)
logger.debug(df)
logger.info("visualizing")
fig_dir_path = os.path.join(os.path.dirname(data_path), "figures")
strategy_str = "{}_{}_{}".format(data_name, args["strategy"], args["n_sg"])
logger.debug(fig_dir_path)
metric_names = [ADM_METRIC, "ratio_fake_removed_entities", "ratio_fake_removed_edges", RADM_METRIC]
if args["type"] == "fig":
# if data_name == "email-temp":
visualize_figures(df, strategy_str, metric_names, fig_dir_path)
elif args["type"] == "tab":
visualize_tables(df, strategy_str, ["adm", "radm"], fig_dir_path)
if __name__ == "__main__":
args = rutils.setup_arguments(add_arguments)
rutils.setup_console_logging(args)
main(args)