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environment.yml
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name: gtex-gatk4
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- filechunkio=1.6=py36_0
- ftputil=3.2=py36_0
- pyasn1-modules=0.0.5=py36_0
- pygraphviz=1.3.1=py36_0
- pysftp=0.2.9=py36_0
- rsa=3.1.4=py36_0
- snakemake-minimal=5.4.0=py_0
- urllib3=1.12=py36_0
- aioeasywebdav=2.2.0=py36_0
- aiohttp=3.4.4=py36h470a237_0
- appdirs=1.4.3=py_1
- async-timeout=3.0.1=py_1000
- attrs=18.2.0=py_0
- boto3=1.7.84=py_0
- botocore=1.10.84=py_0
- cachetools=2.1.0=py_0
- cairo=1.14.12=h276e583_5
- chardet=3.0.4=py36_1003
- configargparse=0.13.0=py_1
- cryptography-vectors=2.3.1=py36_1000
- decorator=4.3.0=py_0
- dropbox=7.3.1=py36_0
- expat=2.2.5=hfc679d8_2
- fontconfig=2.13.1=h65d0f4c_0
- freetype=2.9.1=h6debe1e_4
- gettext=0.19.8.1=h5e8e0c9_1
- gitdb2=2.0.5=py_0
- gitpython=2.1.11=py_0
- glib=2.56.2=h464dc38_1
- google-auth=1.2.1=py_0
- google-auth-httplib2=0.0.3=py_2
- google-cloud-core=0.24.1=py36_0
- google-cloud-storage=1.1.1=py36_0
- google-resumable-media=0.0.2=py36_0
- googleapis-common-protos=1.5.5=py_0
- graphite2=1.3.13=hfc679d8_0
- graphviz=2.38.0=h08bfae6_9
- harfbuzz=1.9.0=h04dbb29_1
- httplib2=0.12.0=py36_1000
- icu=58.2=hfc679d8_0
- idna_ssl=1.1.0=py36_1000
- jinja2=2.10=py_1
- jmespath=0.9.3=py_1
- jpeg=9c=h470a237_1
- jsonschema=3.0.0a3=py36_1000
- libiconv=1.15=h470a237_3
- libpng=1.6.36=ha92aebf_0
- libprotobuf=3.6.1=hd28b015_0
- libtiff=4.0.10=he6b73bb_1
- libtool=2.4.6=h470a237_2
- libuuid=2.32.1=h470a237_2
- libxcb=1.13=h470a237_2
- libxml2=2.9.8=h422b904_5
- markupsafe=1.1.0=py36h470a237_0
- multidict=4.5.2=py36h470a237_0
- networkx=2.2=py_1
- pango=1.40.14=he752989_2
- pcre=8.41=hfc679d8_3
- pixman=0.34.0=h470a237_3
- prettytable=0.7.2=py_3
- protobuf=3.6.1=py36hfc679d8_1
- pthread-stubs=0.4=h470a237_1
- pyrsistent=0.14.8=py36h470a237_0
- python-irodsclient=0.7.0=py_0
- ratelimiter=1.2.0=py36_1000
- s3transfer=0.1.13=py36_1001
- smmap2=2.0.5=py_0
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h470a237_2
- xorg-libice=1.0.9=h470a237_4
- xorg-libsm=1.2.3=h8c8a85c_0
- xorg-libx11=1.6.6=h470a237_0
- xorg-libxau=1.0.8=h470a237_6
- xorg-libxdmcp=1.1.2=h470a237_7
- xorg-libxext=1.3.3=h470a237_4
- xorg-libxpm=3.5.12=h470a237_2
- xorg-libxrender=0.9.10=h470a237_2
- xorg-libxt=1.1.5=h470a237_2
- xorg-renderproto=0.11.1=h470a237_2
- xorg-xextproto=7.3.0=h470a237_2
- xorg-xproto=7.0.31=h470a237_7
- yarl=1.3.0=py36h470a237_0
- asn1crypto=0.24.0=py36_0
- bcrypt=3.1.5=py36h7b6447c_0
- blas=1.0=mkl
- ca-certificates=2018.03.07=0
- certifi=2018.11.29=py36_0
- cffi=1.11.5=py36he75722e_1
- cryptography=2.4.2=py36h1ba5d50_0
- datrie=0.7.1=py36h7b6447c_1
- docutils=0.14=py36_0
- flake8=3.6.0=py36_0
- idna=2.8=py36_0
- intel-openmp=2019.1=144
- libedit=3.1.20170329=h6b74fdf_2
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=8.2.0=hdf63c60_1
- libgfortran-ng=7.3.0=hdf63c60_0
- libsodium=1.0.16=h1bed415_0
- libstdcxx-ng=8.2.0=hdf63c60_1
- mccabe=0.6.1=py36_1
- mkl=2019.1=144
- mkl_fft=1.0.6=py36hd81dba3_0
- mkl_random=1.0.2=py36hd81dba3_0
- ncurses=6.1=he6710b0_1
- numpy=1.15.4=py36h7e9f1db_0
- numpy-base=1.15.4=py36hde5b4d6_0
- openssl=1.1.1a=h7b6447c_0
- pandas=0.23.4=py36h04863e7_0
- paramiko=2.4.2=py36_0
- pip=18.1=py36_0
- psutil=5.4.8=py36h7b6447c_0
- pyasn1=0.4.4=py36h28b3542_0
- pycodestyle=2.4.0=py36_0
- pycparser=2.19=py36_0
- pyflakes=2.0.0=py36_0
- pynacl=1.3.0=py36h7b6447c_0
- python=3.6.8=h0371630_0
- python-dateutil=2.7.5=py36_0
- pytz=2018.7=py36_0
- pyyaml=3.13=py36h14c3975_0
- readline=7.0=h7b6447c_5
- requests=2.14.2=py36_0
- setuptools=40.6.3=py36_0
- six=1.12.0=py36_0
- sqlite=3.26.0=h7b6447c_0
- tk=8.6.8=hbc83047_0
- wheel=0.32.3=py36_0
- wrapt=1.10.11=py36h14c3975_2
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=had09818_2
- zlib=1.2.11=h7b6447c_3
- pip:
- snakemake==5.4.0