Toolkit for VNTR genotyping and repeat-pan genome graph construction
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Feb 3, 2025 - Python
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vntr
Here are 9 public repositories matching this topic...
a python package for finding tandem repeats from genomic sequences
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Dec 5, 2024 - C
A python library for decomposing and visualizing tandem repeat sequences
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Feb 23, 2024 - Python
VNtyper Online Backend is a Dockerized pipeline that handles alignment-free MUC1 VNTR genotyping for autosomal dominant tubulointerstitial kidney disease (ADTKD). It exposes a frontend and REST API for job submission, orchestrates asynchronous tasks, and integrates multiple modules to streamline variant analysis for short-read sequencing data.
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Feb 4, 2025 - Shell
MucOneUp simulates diploid MUC1 VNTR references with variable repeats, targeted mutations, and toxic protein detection. It also integrates an Illumina read simulation pipeline for comprehensive genomic benchmarking.
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Feb 4, 2025 - Python
Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites
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Nov 6, 2017 - Shell
Application for polymorphic SSRs loci identification in genomic sequences
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Sep 17, 2024 - Java
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