Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPRAGE also (Version 2.1) This is OBSOLETE. Please use http://github.com/thalamicseg/hipsthomasdocker which is the latest and maintained © Copyright Manojkumar Saranathan 2021-2025
Recurrent Neural Networks of Mediodorsal Thalamus and Prefrontal Cortex in Temporal Contexts
Analysis and modeling code for Jajcay et al. "Cross-frequency slow oscillation-spindle coupling in a biophysically realistic thalamocortical neural mass model "
Segmentation of the thalamus into twelve of its nuclei using the white-matter-nulled MPRAGE MRI image contrast.
A tool for extracting diffusion-based brain connectivity
Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 1
Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 2
Illustrative model of activity modulation in Reticular Nucleus (RN) by Midbrain Reticular Formation (MRF) supporting Thalamic gating.
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