MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

Use one command to perform genome-centric metagenomics using state-of-the-art methods

This repository contains all codes used in the "The Gastric Microbiome and Gastric Carcinogenesis: Bacterial Diversity, Co-occurrence Patterns and Predictive Models" projects

This is the repository for a bioinformatics project about identifying the optimal pipeline for identifying a potential microbiome shift in COPD patients after ceasing azithromycin treatment.

Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.

General purpose package containing useful functions for microbiome analysis pipelines

Host plant rhizosphere microbiome analysis

Script repository related to the data processing and analyses of the study "Evidence of habitat specificity in sponge microbiomes from Antarctica"