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fmindex

Here are 6 public repositories matching this topic...

feldroop / floxer

FM-index longread PEX-based aligner

bioinformatics fmindex longread-aligner

Updated Jan 13, 2025
C++

DensCatt / FMIndex_package

Creation of the FM index of a FASTA file. Read more: Ben Langmead: “Introduction to the Burrows-Wheeler Transform and FM Index”. https://www.cs.jhu.edu/~langmea/resources/bwt_fm.pdf

burrows-wheeler-transform fmindex

Updated Oct 17, 2024
R

Gab-23 / FMIndexR

Here you can find a small R package that will allow the user to build an FM index from an input FASTA file. The FM index will then be used to look for patterns using a function that implements backward search.

genomics fmindex

Updated Sep 1, 2024
R

DonQwerty / Genome-Aligners

This repository contains my end-of-degree project. I've implemented a simple version of three of the most known aligners like Bowtie, BWA and BWT-SM

bwa bowtie bwt-sm aligners fmindex

Updated Jul 4, 2017
C++

mspaic96 / GenomeInformatics

Repository for the master course of Genome Informatics at the School of Electrical Engineering in Belgrade.

genomics python3 burrows-wheeler-transform suffix-array fmindex sais jypyternotebook

Updated May 26, 2021
Jupyter Notebook

moshiba / fmindex

ultra fast parallel FM index generation for DNA reads

cpp parallel cuda fmindex

Updated Nov 20, 2024
C++

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