High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Oct 24, 2024 - Python
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calcium-imaging-analysis
Here are 16 public repositories matching this topic...
Platform for Calcium Imaging analysis. DEPRECATED.
signal-processing neuroscience plotting calcium-imaging interactive-visualizations caiman pypi-package calcium-imaging-analysis
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Nov 26, 2023 - Python
This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
image-processing calcium-imaging dictionary-learning graph-signal-processing calcium-imaging-analysis widefield-microscopy dendritic-imaging
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Nov 1, 2023 - MATLAB
Analysis code for the OpenScope Credit Assignment project.
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Jul 9, 2024 - Jupyter Notebook
Mesmerize plugin for the napari viewer
neuroscience neuroimaging calcium-imaging neuroscience-methods neuroscience-data calcium-imaging-analysis
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Oct 29, 2022 - Python
Calcium Imaging Data ANalysis software
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Aug 25, 2023 - Python
Computational analysis of neuronal ensembles and travelling waves in neural activity from the cerebral cortex of the fat-tailed dunnart
machine-learning computational-neuroscience network-analysis systems-neuroscience calcium-imaging-analysis
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May 23, 2023 - Jupyter Notebook
Fully automated calcium imaging analysis Workflow
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Dec 14, 2024 - Jupyter Notebook
This is MATLAB script created and used via the Trinkaus-Randall Lab at Boston University for the analysis of epithelial cellular calcium signaling during wound healing.
cell intensity calcium-imaging calcium intensity-analysis cell-culture calcium-imaging-analyzer wound-healing cornea calcium-imaging-analysis
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Jun 12, 2024 - MATLAB
Spike2 script for handling calcium imaging data. The program cleans the data, visualizes it, and extracts features of the detected calcium signals. It creates two output files: a txt file holding the clean data values for all cells, and a csv file containing a summary of the results obtained.
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Apr 8, 2024
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
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Jul 11, 2023 - Jupyter Notebook
[iScience] [Tensorflow] Subcellular Signal Segmenting Spatiotemporal Model.
deep-learning tensorflow keras generative-adversarial-network gan calcium-imaging generative-adversarial-networks spatio-temporal-analysis calcium-signals streamlit calcium-imaging-analysis
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Oct 17, 2022 - Python
Supervisors: Dr. Patrick Piantadosi and Dr. Andrew Holmes
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Jan 28, 2022 - Jupyter Notebook
Add manual Calcium scores measurements to REDCap
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Jan 27, 2024 - Jupyter Notebook
CalciumImaging analysis matlab pipeline for suite2p outputs
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Nov 28, 2022 - MATLAB
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
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Jul 10, 2023 - Jupyter Notebook
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