diff --git a/jupyter-book/introduction/raw_data_processing.md b/jupyter-book/introduction/raw_data_processing.md index 9d3877f6..1cc1b2d3 100644 --- a/jupyter-book/introduction/raw_data_processing.md +++ b/jupyter-book/introduction/raw_data_processing.md @@ -453,7 +453,7 @@ To do this, you can replace the above commands with the following (instructions from [here](https://github.com/Haydnspass/miniforge#rosetta-on-mac-with-apple-silicon-hardware)): ```bash -CONDA_SUBDIR=osx-64 conda create -n af -y -c bioconda simpleaf # create a new environment +CONDA_SUBDIR=osx-64 conda create -n af -y -c bioconda -c conda-forge simpleaf # create a new environment conda activate af conda env config vars set CONDA_SUBDIR=osx-64 # subsequent commands use intel packages ```` @@ -477,7 +477,7 @@ ref_dir="toy_human_ref" # Fetch CB permit list ## the right chevron (>) redirects the STDOUT to a file. -wget -qO- https://raw.githubusercontent.com/10XGenomics/cellranger/master/lib/python/cellranger/barcodes/3M-february-2018.txt.gz | gunzip - > 3M-february-2018.txt +wget -qO- https://github.com/f0t1h/3M-february-2018/raw/master/3M-february-2018.txt.gz | gunzip - > 3M-february-2018.txt ```