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setup.cfg
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# See here:
# https://setuptools.readthedocs.io/en/latest/setuptools.html#configuring-setup-using-setup-cfg-files
# https://gist.github.com/althonos/6914b896789d3f2078d1e6237642c35c
# https://github.com/pyscaffold/pyscaffold/blob/master/setup.cfg
[metadata]
# version is extracted from SCM tag by setuptools_scm
author = Reece Hart
author-email = biocommons-dev@googlegroups.com
description =
home-page = https://github.com/biocommons/biocommons.seqrepo
name = biocommons.seqrepo
description-content-type = text/x-rst; charset=UTF-8
description-file = README.rst
license-file = LICENSE
platform = any
classifiers =
Development Status :: 5 - Production/Stable
Intended Audience :: Developers
Intended Audience :: Healthcare Industry
Intended Audience :: Science/Research
License :: OSI Approved :: Apache Software License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Medical Science Apps.
keywords =
biocommons
bioinformatics
genomics
hgvs
variation
[options]
packages = find:
python_requires = >= 3.5
zip_safe = true
package_dir =
= src
install_requires =
bioutils>0.4
coloredlogs
pysam
requests
requests_html
six
tqdm
yoyo-migrations
setup_requires =
pytest-runner
setuptools_scm
wheel
tests_require =
pytest
pytest-cov
vcrpy
[options.entry_points]
console_scripts =
seqrepo = biocommons.seqrepo.cli:main
[options.package_data]
biocommons.seqrepo.fastadir =
_data/migrations/*
biocommons.seqrepo.seqaliasdb =
_data/migrations/*
[options.extras_require]
dev =
ipython
tox
# TODO: Needed?
[options.packages.find]
where = src
exclude =
__pycache__
*.pyc
[aliases]
test = pytest
[bdist_wheel]
universal = 1
[build_sphinx]
all_files = 1
# http://pep8.readthedocs.org/en/latest/intro.html#error-codes
[flake8]
max-line-length = 120
exclude = tests/*
max-complexity = 10
ignore = E129,E221,E241,E251,E303,W291