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@article{wood11,
author = {Wood, S. N.},
year = {2011},
title = {Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models},
journal = {Journal of the Royal Statistical Society (B)},
volume = {73},
number = {1},
pages = {3-36},
doi = {10.1111/j.1467-9868.2010.00749.x}
}
@techreport{tbep0400,
author={A.J. Janicki and D. Wade and J.R. Pribble},
year={2000},
title={Developing and Establishing a Process to Track the Status of Chlorophyll-a Concentrations and Light Attenuation to Support Seagrass Restoration Goals in {T}ampa {B}ay},
number={04-00},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={},
misc={},
url={https://drive.google.com/file/d/1XMULU8w4syWcSv_ciOUOhnC_G4xt6GIF/view?usp=drivesdk},
}
@techreport{jei2022,
title={Identifying Potential Drivers of Change in Seagrass and Algal Community Composition in {SWFL} Aquatic Preserves},
author={{Janicki Environmental, Inc.}},
year={2022},
publisher={Charlotte Harbor and Estero Bay Aquatic Preserves},
pages={},
misc={},
url={https://sarasota.wateratlas.usf.edu/upload/documents/Final_AP_Seagrass_Report_040422.pdf},
}
@software{Beck20b,
author = {Beck, M. W.},
title = {{t}bep-tech/seagrasstransect-dash: v1.0},
month = dec,
year = 2020,
publisher = {Zenodo},
version = {v1.0},
doi = {10.5281/zenodo.4319936},
url = {https://doi.org/10.5281/zenodo.4319936}
}
@software{Beck20a,
author = {Beck, M. W.},
title = {{t}bep-tech/wq-dash: v1.0},
month = feb,
year = 2020,
publisher = {Zenodo},
version = {v1.0},
doi = {10.5281/zenodo.3648664},
url = {https://doi.org/10.5281/zenodo.3648664}
}
@article{shiir,
title={Response of {S}outh {F}lorida estuaries to the 2023 heatwave},
author={Shi, J and Hu, C},
journal={Estuaries and Coasts},
year={In review},
doi={10.21203/rs.3.rs-3528678/v1}
}
@techreport{garcia2023,
author={L. Garcia and C. J. Anastasiou and D. Robison},
year={2023},
title={{T}ampa {B}ay {S}urface {W}ater {I}mprovement and {M}anagement ({SWIM}) {P}lan},
publisher={Southwest Florida Water Management District},
address={Brooksville, Florida},
pages={},
misc={},
url={https://drive.google.com/file/d/1kZkvuprvsMyN9nPS5PHYvXHyo1KQxKTr/view?usp=drivesdk},
}
@techreport{tbep0696,
author={A.J. Janicki and D.L. Wade},
year={1996},
title={Estimating Critical Nitrogen Loads for the {T}ampa {B}ay {E}stuary: An Empirically Based Approach to Setting Management Targets},
number={06-96},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={},
misc={},
url={https://drive.google.com/file/d/1kZkvuprvsMyN9nPS5PHYvXHyo1KQxKTr/view?usp=drivesdk},
}
@article{dessu2018,
title={Effects of sea-level rise and freshwater management on long-term water levels and water quality in the {F}lorida {C}oastal {E}verglades},
author={Dessu, Shimelis B and Price, Ren{\'e} M and Troxler, Tiffany G and Kominoski, John S},
journal={Journal of Environmental Management},
volume={211},
pages={164--176},
year={2018},
doi={10.1016/j.jenvman.2018.01.025}
}
@article{alarcon2024,
title={Potential challenges for the restoration of {B}iscayne {B}ay ({F}lorida, {USA}) in the face of climate change effects revealed with predictive models},
author={Alarcon, Vladimir J and Linhoss, Anna C and Kelble, Christopher R and Mickle, Paul F and Fine, Alexandra and Montes, Enrique},
journal={Ocean \& Coastal Management},
volume={247},
pages={106929},
year={2024},
doi={10.1016/j.ocecoaman.2023.106929}
}
@article{hall2016,
title={Recurrence of \textit{{T}halassia {t}estudinum} seagrass die-off in {F}lorida {B}ay, {USA}: initial observations},
author={Hall, M. O. and Furman, B. T. and Merello, M. and Durako, M. J.},
journal={Marine Ecology Progress Series},
volume={560},
pages={243--249},
year={2016},
doi={10.3354/meps11923}
}
@techreport{blakesley2001,
title={Survey of the Distribution of the Marine Slime Mold \textit{{L}abyrinthula} sp. {i}n the seagrass \textit{{T}halassia testudinum} in the {T}ampa {B}ay Area, Fall 1999-Fall 2000},
author={Blakesley, Barbara and Hall, Penny and Berns, Donna and Hyniova, Jitka and Merello, Manuel and Conroy, Rebecca},
year={2001},
number={01-01},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={},
misc={},
url={https://drive.google.com/file/d/1tUkGW7TRAJ_skWj-UemDVIJnUAsy0ITf/view?usp=drivesdk},
}
@article{robblee1991,
title={Mass mortality of the tropical seagrass \textit{{T}halassia testudinum} in {F}lorida {B}ay ({USA})},
author={Robblee, Michael B and Barber, TR and Carlson Jr, PR and Durako, MJ and Fourqurean, JW and Muehlstein, LK and Porter, D and Yarbro, LA and Zieman, RT and Zieman, Joseph C},
journal={Marine Ecology Progress Series},
volume={71},
pages={297--299},
year={1991}
}
@article{tomasko2023,
title={Ecological impacts to {S}arasota {B}ay from {P}iney {P}oint discharges - examining the evidence},
author={Tomasko, D. A.},
journal={Florida Scientist},
volume={86},
number={2},
pages={301-313},
year={2023}
}
@article{scolaro2023,
title={Piney {P}oint, seagrass, and macroalgae: impact assessment and a case for enhanced macroalgae monitoring},
author={Scolaro, S. and Beck, M. W. and Burke, M. C. and Raulerson, G. E. and Sherwood, E. T.},
journal={Florida Scientist},
volume={86},
number={2},
pages={339-345},
year={2023}
}
@book{sakamoto1986,
title={Akaike information criterion statistics},
author={Sakamoto, Yosiyuki and Ishiguro, Makio and Kitagawa, Genshiro},
location={Dordrecht, The Netherlands: D. Reidel},
year={1986},
publisher={Taylor \& Francis}
}
@Article{bates15,
title = {Fitting Linear Mixed-Effects Models Using {lme4}},
author = {Douglas Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker},
journal = {Journal of Statistical Software},
year = {2015},
volume = {67},
number = {1},
pages = {1--48},
doi = {10.18637/jss.v067.i01},
}
@Book{wood17,
title = {Generalized {A}dditive {M}odels: An Introduction with {R}},
year = {2017},
author = {Wood, S. N.},
edition = {2},
publisher = {Chapman and Hall/CRC},
}
@Book{millard13,
title = {EnvStats: An {R} Package for Environmental Statistics},
author = {Steven P. Millard},
year = {2013},
publisher = {Springer},
address = {New York},
isbn = {978-1-4614-8455-4},
url = {https://www.springer.com},
}
@software{begueria23,
title = {{SPEI}: Calculation of the {S}tandardized {P}recipitation-{E}vapotranspiration
{I}ndex},
author = {Santiago Beguería and Sergio M. Vicente-Serrano},
year = {2023},
version = {R package version 1.8.1},
url = {https://CRAN.R-project.org/package=SPEI},
}
@software{chamberlain23,
title = {{rnoaa}: {NOAA} Weather Data from {R}},
author = {Scott Chamberlain and Daniel Hocking},
year = {2023},
version = {R package version 1.4.0},
url = {https://CRAN.R-project.org/package=rnoaa},
}
@techreport{tbep0816,
author={J. O. R. Johansson},
year={2016},
title={Seagrass Transect Monitoring in {T}ampa {B}ay: A Summary of Findings from 1997 through 2015},
number={08-16},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={},
misc={},
url={https://drive.google.com/file/d/1Z_8L9sYQWSl1hon1tP1Y8zBo7MHQK9zC/view?usp=drivesdk},
}
@unpublished{SWFWMD23,
author = {{Southwest Florida Water Management District}},
note = {Website public data},
title = {Seagrass in 2022},
year = {2023},
url = {https://data-swfwmd.opendata.arcgis.com/datasets/seagrass-in-2022},
}
@techreport{johansson15,
author={J. O. R. Johansson and {Janicki Environmental, Inc.}},
year={2015},
title={Long-Term Underwater Light Climate Variation and Submerged Seagrass Trends in {T}ampa {B}ay, {F}lorida: With a discussion of phytoplankton and {CDOM} interactions},
number={06-15},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={},
misc={},
url={https://drive.google.com/file/d/19bNEs2qy6z0hXa1IE7OtbFTjqk1LarFN/view?usp=drivesdk},
}
@article{lopez2023,
title={\textit{Pyrodinium bahamense} bloom dynamics in {O}ld {T}ampa {B}ay, {FL}, with a focus on {F}eather {S}ound},
author={Lopez, C. B. and Shankar, S. and Kaminski, S. G. and Hubbard, K. A.},
journal={Florida Scientist},
volume={86},
issue={2},
pages={62-71},
year={2023}
}
@techreport{luther2022,
author={M. E. Luther and S. D. Meyers},
year={2022},
title={Designing a Genetic Algorithm for the Selection of Causeway Cut-Throughs in {O}ld {T}ampa {B}ay: Planning and Prototyping},
number={08-22},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={11},
misc={},
url={https://drive.google.com/file/d/1-1Jq9vly5EvVwEp698brlBucXjSMDbNn/view?usp=sharing},
}
@techreport{sherwood2015,
author={Sherwood, E. T. and H. S. Greening and L. Garcia and K. Kaufman and A. J. Janicki and R. Pribble and B. Cunningham and S. Peene and J. Fitzpatrick and K. Dixon and M. Wessel},
year={2015},
title={Development of an integrated ecosystem model to determine effectiveness of potential watershed management projects on improving {O}ld {T}ampa {B}ay},
number={10-15},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={},
misc={},
url={https://drive.google.com/file/d/1BCviGfLykVX-p1tA3b0306deP3pKMagr/view?usp=drivesdk},
}
@techreport{tbep0623,
author={{Janicki Environmental, Inc.}},
year={2023},
title={Estimates of Total Nitrogen, Total Phosphorus, Total Suspended Solids, and Biological Oxygen Demand Loadings to {T}ampa {B}ay, {F}lorida: 2017-2021},
number={06-23},
publisher={Tampa Bay Estuary Program},
address={St. Petersburg, Florida},
pages={83},
misc={},
url={https://drive.google.com/file/d/1KARuSC5fGx05MuT1wiOQFWNXysBokkQl/view?usp=share_link},
}
@inproceedings{lewis1985,
title={A new geographic description of the boundaries and subdivisions of {T}ampa {B}ay},
author={Lewis III, Roy R and Whitman Jr, Robert L},
booktitle={Proceedings of the Tampa Bay Area Scientific Information Symposium, Report},
number={65},
pages={10--17},
year={1985}
}
@techreport{Robison20,
author = {Robison, D. and Ries, T. and Saarinen, J. and Tomasko, D. A. and Sciarrino, C.},
institution = {Tampa Bay Estuary Program, St. Petersburg, Florida},
number = {#07-20},
title = {{Tampa Bay Estuary Program: 2020 Habitat Master Plan Update}},
type = {Technical report},
year = {2020},
url = {https://drive.google.com/file/d/1Hp0l_qtbxp1JxKJoGatdyuANSzQrpL0I/view?usp=drivesdk},
}
@book{phillips1960,
title={Observations on the ecology and distribution of the {F}lorida seagrasses},
author={Phillips, R. C.},
number={44},
year={1960},
publisher={Florida State Board of Conservation, Marine Laboratory}
}
@incollection{lewis1985,
author={Lewis III, Roy R and Durako, MJ and Moffler, MD and Phillips, RC},
editor={S. F. Treat and J. L. Simon and Lewis, III, R. R. and Whitman, Jr., R. L.},
year={1985},
title={Seagrass meadows of {T}ampa {B}ay - A review},
booktitle={Proceedings, {T}ampa {B}ay {A}rea {S}cientific {I}nformation {S}ymposium, {M}ay 1982},
publisher={Bellweather Press},
address={Tampa, Florida},
pages={210-246},
url={https://drive.google.com/file/d/1sNp3FpjdeOjATZ9nDRRAiXEOqQen9W_p/view?usp=sharing}
}
@article{lirman2003,
title = {The influence of salinity on seagrass growth, survivorship, and distribution within Biscayne Bay, Florida: Field, experimental, and modeling studies},
author = {Lirman, Diego and Cropper, Wendell P.},
year = {2003},
month = {02},
date = {2003-02},
journal = {Estuaries},
pages = {131--141},
volume = {26},
number = {1},
doi = {10.1007/bf02691700},
url = {http://dx.doi.org/10.1007/bf02691700},
langid = {en}
}
@article{mcmillan1967,
title = {Salinity Tolerances of Five Marine Spermatophytes of Redfish Bay, Texas},
author = {McMillan, Calvin and Moseley, Frank N.},
year = {1967},
month = {05},
date = {1967-05},
journal = {Ecology},
pages = {503--506},
volume = {48},
number = {3},
doi = {10.2307/1932688},
url = {http://dx.doi.org/10.2307/1932688},
langid = {en}
}
@article{zieman1975,
title = {Seasonal variation of turtle grass, \textit{{T}halassia testudinum {K}önig}, with reference to temperature and salinity effects},
author = {Zieman, Joseph C.},
year = {1975},
month = {01},
date = {1975-01},
journal = {Aquatic Botany},
pages = {107--123},
volume = {1},
doi = {10.1016/0304-3770(75)90016-9},
url = {http://dx.doi.org/10.1016/0304-3770(75)90016-9},
langid = {en}
}
@article{duffin2021,
title={Spatial patterns of \textit{{T}halassia testudinum} immune status and \textit{{L}abyrinthula} spp. {l}oad implicate environmental quality and history as modulators of defense strategies and wasting disease in {F}lorida {B}ay, {U}nited {S}tates},
author={Duffin, Paige and Martin, Daniel L and Furman, Bradley T and Ross, Cliff},
journal={Frontiers in Plant Science},
volume={12},
pages={612947},
year={2021},
doi={10.3389/fpls.2021.612947}
}
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url = {http://dx.doi.org/10.1111/gcb.13623},
langid = {en}
}
@article{dunic2023,
title = {Management thresholds shift under the influence of multiple stressors: Eelgrass meadows as a case study},
author = {Dunic, Jillian C. and {Côté}, Isabelle M.},
year = {2023},
month = {01},
date = {2023-01-17},
journal = {Conservation Letters},
volume = {16},
number = {2},
pages = {e12938},
doi = {10.1111/conl.12938},
url = {http://dx.doi.org/10.1111/conl.12938},
langid = {en}
}
@article{dunic2021,
title = {Long{-}term declines and recovery of meadow area across the world{\textquoteright}s seagrass bioregions},
author = {Dunic, Jillian C. and Brown, Christopher J. and Connolly, Rod M. and Turschwell, Mischa P. and {Côté}, Isabelle M.},
year = {2021},