diff --git a/qc_fastq.sh b/qc_fastq.sh index 263ac50..bd46290 100755 --- a/qc_fastq.sh +++ b/qc_fastq.sh @@ -120,13 +120,12 @@ while read f do in1="$in1 ${f}${r1_suf}" in2="$in2 ${f}${r2_suf}" - out_log="$out_log ${outdir}/filtered_reads/${f##*/}.filtered.log" - out1="$out1 ${outdir}/filtered_reads/${f##*/}.filtered.${r1_suf/#./}" - out2="$out2 ${outdir}/filtered_reads/${f##*/}.filtered.${r2_suf/#./}" + out_log="$out_log ${outdir}/filtered_reads/${f##*/}_filtered.log" + out1="$out1 ${outdir}/filtered_reads/${f##*/}_filtered${r1_suf/#./}" + out2="$out2 ${outdir}/filtered_reads/${f##*/}_filtered${r2_suf/#./}" done < "$file_list" - # # FastQC on raw files #