Adjust suffix of filtered reads

tavareshugo · Jan 4, 2018 · 7487a2c · 7487a2c
1 parent 45c9227
commit 7487a2c
Showing 1 changed file with 3 additions and 4 deletions.
diff --git a/qc_fastq.sh b/qc_fastq.sh
@@ -120,13 +120,12 @@ while read f
 do
 	in1="$in1 ${f}${r1_suf}"
 	in2="$in2 ${f}${r2_suf}"
-	out_log="$out_log ${outdir}/filtered_reads/${f##*/}.filtered.log"
-	out1="$out1 ${outdir}/filtered_reads/${f##*/}.filtered.${r1_suf/#./}"
-	out2="$out2 ${outdir}/filtered_reads/${f##*/}.filtered.${r2_suf/#./}"
+	out_log="$out_log ${outdir}/filtered_reads/${f##*/}_filtered.log"
+	out1="$out1 ${outdir}/filtered_reads/${f##*/}_filtered${r1_suf/#./}"
+	out2="$out2 ${outdir}/filtered_reads/${f##*/}_filtered${r2_suf/#./}"
 done < "$file_list"
 
 
-
 #
 # FastQC on raw files
 #