From 51dfef484ee7f6594bf5e6162c05ffcf5b6a94e1 Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@broadinstitute.org>
Date: Wed, 11 Sep 2019 19:33:18 -0400
Subject: [PATCH] Update minnie-kenny.sh to run with Jenkins' old git (#5169)

---
 minnie-kenny.sh | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/minnie-kenny.sh b/minnie-kenny.sh
index 6a58f91234b..55da944178d 100755
--- a/minnie-kenny.sh
+++ b/minnie-kenny.sh
@@ -98,7 +98,8 @@ validate_setup() {
     fi
   fi
 
-  minnie_kenny_git_dir="$(git rev-parse --absolute-git-dir)"
+  # Get the git absolute directory, even when older versions of git do not support --absolute-git-dir
+  minnie_kenny_git_dir="$(cd "$(git rev-parse --git-dir)" && pwd)"
   if [ ! -f "${minnie_kenny_git_dir}/../${minnie_kenny_gitconfig}" ]; then
     echo_err "Error: ${minnie_kenny_gitconfig} was not found next to the directory ${minnie_kenny_git_dir}"
     exit 1