- These packages are available under the names
tesbml,tesedml, andtecombineso as not to conflict with the official packages.
After installing Tellurium notebook a second time, I get a message saying "The Tellurium Python kernel failed to start. It may be missing or non-functional. Your Tellurium installation may be corrupt"
- Please wipe out or move your app data directory:
- On Windows, it is
C:\Users\<username>\AppData\Roaming\Tellurium(or something similar). - On Mac, it is
~/Library/Application Support/Tellurium(please note the space, which needs to be escaped if using the shell) - On Linux, it is
~/.config/Tellurium
- On Windows, it is
- Apple requires all developers to pay $100/year for an account. This poses a problem for academic free/open-source software, which is typically maintained on a pro bono basis. You can bypass this message as follows:
- Open the Terminal app from the /Applications/Utilities/ folder and then enter the following command:
sudo spctl --master-disable
- Hit return and authenticate with an admin password
- Open the Terminal app from the /Applications/Utilities/ folder and then enter the following command:
- Tellurium does not have built-in support for constraint-based modeling per se. However, cobrapy is a Python package which does support constraint-based modeling. It can be installed in Tellurium by running the following Python code:
import tellurium as te
te.installPackage('cobra')After installing cobra, you can import it like so:
import cobra- The Tellurium notebook viewer supports special features such as inline OMEX cells. These notebooks cannot be read by Jupyter. The Tellurium notebook viewer can export notebooks to a Jupyter-compatible format.
- The PyPI packages are signed with Kyle Medley's GPG key:
9BE0E97B
- Due to an issue in libSEDML, we currently build libSBML with legacy math. This precludes the Arrays, Multi, and Spatial packages. All other packages are available.